miRTarBase - #MIRT574602


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pre-miRNA Information
pre-miRNA hsa-mir-1231   
Genomic Coordinates chr1: 201808611 - 201808702
Synonyms MIRN1231, hsa-mir-1231, MIR1231
Description Homo sapiens miR-1231 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-1231
Sequence 5| GUGUCUGGGCGGACAGCUGC |24
Evidence Experimental
Experiments Cloned
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN25212119 11 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs768024461 3 dbSNP
rs116338160 9 dbSNP
rs112032363 10 dbSNP
rs544709517 11 dbSNP
Putative Targets

Gene Information
Gene Symbol LZIC   
Synonyms -
Description leucine zipper and CTNNBIP1 domain containing
Transcript NM_032368   
Expression
Putative miRNA Targets on LZIC
3'UTR of LZIC
(miRNA target sites are highlighted)		 
>LZIC|NM_032368|3'UTR
   1 CATGGTGCAGAAGCTTGTAACATTGATCACATTCTTAATGTAAATGGTGTCTTTCTTCTGGGGTTTTCAGTTATTGCAAA
  81 GAAATGAAGAGATTCTGGAAATGCATCAATAACCTAAGAAAAAGCGACATAAAAATATACTTATGGCTTGTGTTTATGCT
 161 CTTCATCATTGTGCGTTGTGTGCGGTTACCTGCTTGAGTGATCCTGAACTTGTTGCGACAGAGGGACTCACTGGACTCTG
 241 TTCGTTATGATTTGTCTGTTTAAGAGAGAAAACAAAGTGGACTTGATTTTTATTAAGGCTGTTTGTTTTTAAGTGTTGAT
 321 AGTGAACGAAAAGATGTGAAGTAATGATATTTTTCTGCTTACAACTTATCCCCACTCATTGGAGTGAACAGTGACGCAAG
 401 CTCAATAGACTTCATAAGTGTTCATAGAATTTTACAATTCTGAGTGATCTTAGAAATCATTTCTGTTTTTACAAACAAGG
 481 AAACTGAGGTCCAGAAAGAGCAAGCGACTTTGCTTAAAGTCGCATCAGAGAGCTGAGGGTAAGACTCAGGTGTCCTGACT
 561 CCCAGTTTAGTATCTTTTGAATTTTATTTCTGTACCATTTAAAAAAAATAATTAACACTATTTGTGCAAGTCAGTGTTTT
 641 TGAAAATTCAGTGTCCCAATAAAAAGTGGACTGCACACTAAGGGACCATCCCCCAGCCTGTAAGCTGTCTGTATTAATGG
 721 GGCCCGTTGTATCTCGGAATTTTGAGGTTGGAACAATGGGAGCCCTGTTGAGCGTTTCCTAAAGTGACTTAGCCGCCTGC
 801 GTTGTTTGACCAGGGAAGCAACAGGAAATGGCAGCTAGAGGCCCTCCCTGTGCGTGACCTCTTGTCACACTCAGAGGGGG
 881 GTAACTGTCAGCTGTTATCTACTCTTCAGGTTTTGGAGAAACACAAAATAAGTTATGAGGAAAAGCAAATTTCTCTCCTG
 961 AGTATTTACATGTCTCTGTATGCTCAAATATGCAGATGTGTCCCTATGCGTGTATATTAGCTTATTTTTTAGGCTCTAGC
1041 CATTTTATATTCTTTCATGTGCTTCTCAATATTCTTTTTCTTTGCACTTTATACAAATTAAAAGCATTTTTAAAGCTTCT
1121 TCTGTACTGTAAACTACTAGGTGCTTTGCCAACCAGACAGATTAGAGGACCTCCGCTACACTGATGCCTTATTTGGAACT
1201 TAAAAGAGGTGAAATTCATATATCATAAAATTCACCATTTTAAAGTGTACCATTCGTTGGCAGAACATTTACAGTGGTGT
1281 GCAACCATCACTACTCTCTAGTTGCAGAACATTCTTATCACCCCCAAAGGAGGCCCTATACCTATTAAGCAGTTAGTCCC
1361 CATTCCCTTCTCCTCCGACTGCTAACAATAGCCACTAATCTGCACCCTGTCTCTGTGGATTTACCTATTCTGGATATTTC
1441 ATATAAATGGAATCATATGATATGTGACCTTTTTATGTATCTGGCTTCTTTCACTTAGCATAATATTTTCTTTTCTTTTT
1521 TTTTTTTTTTTTGAGACAGAGTTTTACTCTTATTGCCCAGGCTGGAGTGCAATGGCGCAATCTCAACCTCCGCCTCCCAG
1601 GTTCAAGAGATTCTCCTGCCTCAGCTTCCCAAGTAGCTGGGATTACTAGTGTGTACCACCACGCCCAGCTAATTTTTGTA
1681 CCTTTAGTATAGAGACAGGGTTTCACCATGTTGGCCCAGCTGGTCCTGAGCTGACCTCAGGTGATCCAACTGCCTCGGCC
1761 TCCCAAAGTGCTGGGATTATAGGTGTGAGCTACCACACCGGGACATCATCATATTTTCAAGTTTAACCAACATTATAGCA
1841 TGTATCAGTACTTTATTCCTTTTTATGGCTAAATAATATTCCATTGTATGGATATCATATTTTGTTTATCCGGTATCTGT
1921 TGATGATTTGGGTTGTTTCCTTCTTTTGGCTATTGTGAATAATGCTTCAGTGAACATTTGTGTACAAATATTTGTTTGAA
2001 TACCTGTTTTCAATTTTTTTGGGTGTACACCTAGGAATGGAATTGCTGCGTTTGTTGTTGTGTTGTTGTTGTTGTCGTTG
2081 TTTTTTGAGATGGAGTTTCACTCTGTTGCCCAGGCTGGAGTGCAATGGCGTGATCTCGGCTCACCACAACTTCTGCCTCC
2161 CAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTAAGGCATGCGCCACCACACCTGGCTAATTTTGT
2241 GTTTTTAGTAGAGATGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTTAGGTGATCCACCCGCCTCAA
2321 CCTCCCAGAGTGCTGGGATGATTACAGGCATGAGCCACCATACCCGGCCTGAGCCACCACACCCAGCCTACGTTTGTTTT
2401 TTAAGCCATAGAAGATTCTTCCCACCAGTCGGGCACAGTGGCTCACACCTGTAATCCCAGCACTTCAGGAGGCCAAGGCG
2481 GGCGGATCACAAGATCAGGAGCTCAAGACCAGCCTGGCCAACACAGTGAAACTCCATCTCTACAAAAATTAGCCAGGCAT
2561 AGTGGCAGGTGCCTGTAGTCTCAGCTACTTGGGAGACTGAGGCAGGAGAATCACTTGAACCTGGGAGGCAGAGGTTTCGG
2641 TGAGCCGAGATGGCGCCACTGCACTCCAGCCTGGGCGACAGACTGAGACACGGTCTCAAAAAAAAAAAAAAAAAAAAAAA
2721 GAGGAAGAAGATTCTTCCCTTACCCTGCAATAGTAGACCAGAAAAATTAGGAATATCTTGAATTTGAAAGGGACCTAATG
2801 CCTGGCACAGTGGCTCACGCATGTAATCTCAGAACTCTGGGAGGCAGAGGTGGGCGGATCGCCTGAACTCAGGATTTGAG
2881 ACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTAAAAAAAAAAAAAAAATTAGCCAGGCGTGATGGCATGCACTTGTGG
2961 TCCCAGCTACTCAGGAAGCTGAGGTCAGAGGATCACCTGAACCTGGGAAGCAGAGGTTGCAGTGAACTGAGATCACGCCA
3041 CTGTACTGGCTGACAAAGTGAGACCCCTGTCTAAAAAAAAGATAAAGAGAGTTACCTGAATCTGGAATCCTTAATCTTGG
3121 TTTTCCTTAAACTTTCTATAAGTCCAGCATCTGAAATATTTTGTCAATTATCACATTAATGTGTTCATTTTGTAAGTAAG
3201 AGTACTCAATTTAAAATGATCTTACTTTAAAAGTGGCCTAGTTTGCAGTGCCCAGCAGGACACTGACAGTCACAGCTGTG
3281 TGACTTTTTGTGGGTTACTTAATTTTTTTGAGCCTCCTTTTCTCTTCTATTCAATGAGGATAATAGGGCCTACCTCATAG
3361 GATTATTATGCATTCCCCTCTGTTAATGCACGTAAAGTTTTTACTTGGAAAACTAACTCACCATTTAACAACCATTCTAA
3441 GCACCATAGGATATATTTTGTTTCACAAATTTGGTATTCATTCAGAATAAGTATTTGAAAAGTGAGTAAATTCTATGCAA
3521 TTATAGTTATTAAATGACTTATAAACTGTGTTTCTCTTCCACTTCTTGCTACATTTAATCTTCTAGGTGTTCAGATATCT
3601 TTGGAGATTATAGGCAGCAATAAAGCTAAGGCAGCTAACCTTTCAACATTCTTGTGTCAGGCTAATATTTTGGTGAAAGG
3681 AATTCTTGTGTTTCTCAAAGAACTAGAGCTGAAGCAGAAATAAGTTCCAATGAGCAAGTGTCCAATCGGACCATTGAATG
3761 AAATCTAGTGTTTTAAACAATTCTGATGTTTCAATGTTTTGTTCTGTTTTCTTTTGATCTTGTGAGCAGTAAGACATATT
3841 TTATGTGGGTGGTAAAGGAAGAAATCAAGTAACAGAATGAGGAATTGTTCCCAGGAAGAGTTAGAGTTGGGACAAATGGG
3921 TTGTTAACTTTGATTTTTAGATCTTCTCTGAAGACATTAAACATGGAATGGTCATCTTTAGAAAAATAAAAGACTATGCA
4001 ACTCCACCACTGAAATGGTATCTTATTACAGTGAATGATGGATAATCTGAAATTACTATAGAAAAAAATAAACCCAGACC
4081 ATTTTGCCTAGAGCCTTTCAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cgUCGAC-AGGCG---GGUCUGUg 5'
            || || |::||   ||||||| 
Target 5' ctAGGTGCTTTGCCAACCAGACAg 3'
 1137 - 1160 154.00 -16.90
2 
miRNA  3' cgucGACAGGCGGGUCUGug 5'
              |||| :||||||:|  
Target 5' cactCTGT-TGCCCAGGCtg 3'
 2099 - 2117 127.00 -19.50
3 
miRNA  3' cgucgacaggcGGGUCUGug 5'
                     |||||||  
Target 5' aaaaaaataaaCCCAGACca 3'
 4062 - 4081 125.00 -14.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN5745946 8 COSMIC
COSN28868192 64 COSMIC
COSN30144463 110 COSMIC
COSN30144483 115 COSMIC
COSN13569638 125 COSMIC
COSN30503417 174 COSMIC
COSN20073973 183 COSMIC
COSN13569635 216 COSMIC
COSN1465864 255 COSMIC
COSN1465863 279 COSMIC
COSN21496304 339 COSMIC
COSN8147377 481 COSMIC
COSN21957018 823 COSMIC
COSN20802798 1052 COSMIC
COSN2485771 1458 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1365673086 3 dbSNP
rs1295786793 4 dbSNP
rs1456898778 7 dbSNP
rs770308947 10 dbSNP
rs760255793 14 dbSNP
rs1329306391 17 dbSNP
rs371896710 23 dbSNP
rs771855432 24 dbSNP
rs1300258204 30 dbSNP
rs1405347934 31 dbSNP
rs755460957 31 dbSNP
rs1367283697 35 dbSNP
rs1305184234 38 dbSNP
rs748518908 39 dbSNP
rs754311665 40 dbSNP
rs926800909 40 dbSNP
rs779477038 44 dbSNP
rs367641955 45 dbSNP
rs1487488780 46 dbSNP
rs1264615955 50 dbSNP
rs1334929077 58 dbSNP
rs1376431907 60 dbSNP
rs1199075524 61 dbSNP
rs1480960115 65 dbSNP
rs1271583004 70 dbSNP
rs572325999 74 dbSNP
rs980820735 76 dbSNP
rs1446113901 93 dbSNP
rs755535414 100 dbSNP
rs542213528 103 dbSNP
rs1342718115 108 dbSNP
rs942347766 110 dbSNP
rs553880099 125 dbSNP
rs545063381 126 dbSNP
rs979014649 138 dbSNP
rs1004241212 140 dbSNP
rs758441606 143 dbSNP
rs969320127 144 dbSNP
rs1326103717 147 dbSNP
rs903634114 150 dbSNP
rs1318984458 151 dbSNP
rs1042116254 156 dbSNP
rs78138313 164 dbSNP
rs1474066107 167 dbSNP
rs988934093 174 dbSNP
rs1238519214 175 dbSNP
rs1470609566 182 dbSNP
rs1186255017 183 dbSNP
rs765137141 184 dbSNP
rs998112322 189 dbSNP
rs1269449612 191 dbSNP
rs899626345 192 dbSNP
rs1209043566 196 dbSNP
rs1328037080 198 dbSNP
rs529139510 200 dbSNP
rs1018157997 203 dbSNP
rs1194962475 212 dbSNP
rs1035741036 216 dbSNP
rs970058532 217 dbSNP
rs1379843168 220 dbSNP
rs1023999400 224 dbSNP
rs78428571 227 dbSNP
rs904299333 229 dbSNP
rs761634135 240 dbSNP
rs1380630289 241 dbSNP
rs535657417 242 dbSNP
rs536953896 243 dbSNP
rs61785620 244 dbSNP
rs1458016499 245 dbSNP
rs1056606682 246 dbSNP
rs1409738775 250 dbSNP
rs1420757163 254 dbSNP
rs1169258377 261 dbSNP
rs1471635095 268 dbSNP
rs1384025815 269 dbSNP
rs1183704696 270 dbSNP
rs1388106622 273 dbSNP
rs939644972 281 dbSNP
rs1236298988 292 dbSNP
rs1203803293 301 dbSNP
rs1040742990 304 dbSNP
rs1246826840 309 dbSNP
rs1314416707 309 dbSNP
rs1357580798 309 dbSNP
rs926786146 320 dbSNP
rs1407387085 322 dbSNP
rs980936523 323 dbSNP
rs375903011 327 dbSNP
rs1355455649 328 dbSNP
rs536279723 331 dbSNP
rs1163230384 332 dbSNP
rs1443327168 334 dbSNP
rs1249415633 335 dbSNP
rs1188581321 337 dbSNP
rs2289478 345 dbSNP
rs1239960671 347 dbSNP
rs1163603918 365 dbSNP
rs1223521169 367 dbSNP
rs1445906328 373 dbSNP
rs1369141746 375 dbSNP
rs1378019675 385 dbSNP
rs1176519188 390 dbSNP
rs1470497922 392 dbSNP
rs1043736450 395 dbSNP
rs947661146 396 dbSNP
rs951382553 398 dbSNP
rs767381991 405 dbSNP
rs182584786 409 dbSNP
rs1288837769 411 dbSNP
rs567449766 411 dbSNP
rs976661316 414 dbSNP
rs543199588 424 dbSNP
rs1344211489 434 dbSNP
rs532198441 437 dbSNP
rs1305025972 443 dbSNP
rs988984917 444 dbSNP
rs1435819591 453 dbSNP
rs774337284 462 dbSNP
rs1364764963 465 dbSNP
rs960164054 474 dbSNP
rs1287389412 488 dbSNP
rs1000054293 489 dbSNP
rs1303375279 499 dbSNP
rs1426204811 500 dbSNP
rs1342901944 505 dbSNP
rs1438839678 506 dbSNP
rs763710562 509 dbSNP
rs904372299 513 dbSNP
rs1410072706 514 dbSNP
rs1020001664 516 dbSNP
rs1010409547 517 dbSNP
rs980190750 521 dbSNP
rs970494351 522 dbSNP
rs1490908496 528 dbSNP
rs1258998280 546 dbSNP
rs1215165059 547 dbSNP
rs1448297126 547 dbSNP
rs1016259996 548 dbSNP
rs1286936977 552 dbSNP
rs571881862 554 dbSNP
rs1323236149 555 dbSNP
rs1284384746 562 dbSNP
rs1192604598 576 dbSNP
rs1488599972 578 dbSNP
rs952635216 590 dbSNP
rs1287707957 597 dbSNP
rs1056758906 601 dbSNP
rs1219902484 603 dbSNP
rs1483996666 608 dbSNP
rs1025482548 609 dbSNP
rs1174145329 610 dbSNP
rs1469275354 616 dbSNP
rs939592551 616 dbSNP
rs1429678032 621 dbSNP
rs993974521 622 dbSNP
rs550392422 659 dbSNP
rs1435059380 668 dbSNP
rs1259933397 678 dbSNP
rs1275208401 680 dbSNP
rs367945585 684 dbSNP
rs1307032337 687 dbSNP
rs1293520052 688 dbSNP
rs34486818 693 dbSNP
rs561657267 694 dbSNP
rs1045309774 697 dbSNP
rs549392591 704 dbSNP
rs1202307249 705 dbSNP
rs1006632929 710 dbSNP
rs1264097241 723 dbSNP
rs190391923 725 dbSNP
rs1274638667 726 dbSNP
rs560085284 729 dbSNP
rs1042732111 730 dbSNP
rs910050113 735 dbSNP
rs545101391 755 dbSNP
rs1372967068 756 dbSNP
rs774898070 760 dbSNP
rs913497091 761 dbSNP
rs577673812 770 dbSNP
rs1053340171 781 dbSNP
rs938853310 794 dbSNP
rs922587828 795 dbSNP
rs1372353740 796 dbSNP
rs374107121 800 dbSNP
rs980630171 801 dbSNP
rs1423946919 808 dbSNP
rs948831716 816 dbSNP
rs1473479570 817 dbSNP
rs976776070 823 dbSNP
rs1479846609 828 dbSNP
rs562832513 835 dbSNP
rs909252317 846 dbSNP
rs1204432693 849 dbSNP
rs1204723025 849 dbSNP
rs1387626550 851 dbSNP
rs963936601 853 dbSNP
rs1018179519 854 dbSNP
rs1249707232 859 dbSNP
rs979099277 862 dbSNP
rs968547531 871 dbSNP
rs766148536 876 dbSNP
rs150610578 877 dbSNP
rs369066356 877 dbSNP
rs1313035030 878 dbSNP
rs186441781 880 dbSNP
rs1372644751 881 dbSNP
rs1221887181 882 dbSNP
rs1352753538 886 dbSNP
rs1385986701 890 dbSNP
rs1190198201 893 dbSNP
rs181702787 898 dbSNP
rs1250213589 926 dbSNP
rs1178143789 930 dbSNP
rs1289126374 932 dbSNP
rs1483799378 932 dbSNP
rs1035301979 937 dbSNP
rs1391381328 946 dbSNP
rs1001134136 948 dbSNP
rs536129067 953 dbSNP
rs1236733504 964 dbSNP
rs201758275 969 dbSNP
rs191603476 974 dbSNP
rs1466067231 980 dbSNP
rs1392928856 982 dbSNP
rs1343467715 983 dbSNP
rs965216845 984 dbSNP
rs1019440937 988 dbSNP
rs1366222602 989 dbSNP
rs1007096233 992 dbSNP
rs187222294 996 dbSNP
rs774778042 1002 dbSNP
rs1021762536 1009 dbSNP
rs1045257952 1010 dbSNP
rs1412513983 1014 dbSNP
rs1198210415 1020 dbSNP
rs1181121724 1033 dbSNP
rs1417248036 1036 dbSNP
rs1258137375 1038 dbSNP
rs1011262883 1041 dbSNP
rs182302761 1045 dbSNP
rs1183697348 1056 dbSNP
rs1230222703 1059 dbSNP
rs553479884 1061 dbSNP
rs1282424567 1064 dbSNP
rs1404527934 1068 dbSNP
rs888621210 1090 dbSNP
rs1047709735 1096 dbSNP
rs938908973 1117 dbSNP
rs1325547520 1118 dbSNP
rs930061451 1131 dbSNP
rs1331464440 1139 dbSNP
rs1269174869 1144 dbSNP
rs1384436189 1156 dbSNP
rs1159624492 1157 dbSNP
rs538630873 1163 dbSNP
rs1238694926 1169 dbSNP
rs1044574990 1173 dbSNP
rs1480519275 1174 dbSNP
rs922704351 1175 dbSNP
rs1379019521 1180 dbSNP
rs1190651136 1205 dbSNP
rs1315693718 1208 dbSNP
rs1315380071 1209 dbSNP
rs571416198 1211 dbSNP
rs771426488 1220 dbSNP
rs749676318 1231 dbSNP
rs1262202912 1241 dbSNP
rs549592217 1246 dbSNP
rs1223908597 1251 dbSNP
rs1381489130 1255 dbSNP
rs911233449 1256 dbSNP
rs978661544 1258 dbSNP
rs1325910942 1261 dbSNP
rs969079248 1264 dbSNP
rs1321322027 1267 dbSNP
rs1437847983 1277 dbSNP
rs1404538103 1279 dbSNP
rs1336419673 1287 dbSNP
rs1470499228 1296 dbSNP
rs929332821 1298 dbSNP
rs1474891945 1303 dbSNP
rs1373114557 1306 dbSNP
rs76744859 1307 dbSNP
rs989074613 1308 dbSNP
rs972663604 1312 dbSNP
rs965267080 1318 dbSNP
rs1388833943 1319 dbSNP
rs1019915169 1321 dbSNP
rs959885342 1323 dbSNP
rs1035375210 1341 dbSNP
rs1001248896 1343 dbSNP
rs1298330838 1350 dbSNP
rs1158193881 1361 dbSNP
rs1250532729 1362 dbSNP
rs953987247 1367 dbSNP
rs1021396809 1372 dbSNP
rs1449451492 1374 dbSNP
rs72858090 1376 dbSNP
rs1327308724 1377 dbSNP
rs891502427 1377 dbSNP
rs1165442444 1379 dbSNP
rs1423168107 1381 dbSNP
rs1016386137 1387 dbSNP
rs1005796127 1388 dbSNP
rs1184110772 1389 dbSNP
rs1473751044 1390 dbSNP
rs1230921798 1392 dbSNP
rs748362021 1397 dbSNP
rs1437400076 1398 dbSNP
rs556928779 1400 dbSNP
rs1275600476 1405 dbSNP
rs1466425344 1407 dbSNP
rs1207645959 1419 dbSNP
rs1248836814 1422 dbSNP
rs374469328 1427 dbSNP
rs1291190800 1431 dbSNP
rs371570845 1437 dbSNP
rs188147346 1438 dbSNP
rs1349036908 1440 dbSNP
rs888723106 1446 dbSNP
rs1002502538 1452 dbSNP
rs1441916024 1453 dbSNP
rs1267602830 1454 dbSNP
rs1047208500 1463 dbSNP
rs1246247076 1469 dbSNP
rs183728095 1479 dbSNP
rs1164898273 1481 dbSNP
rs1359278324 1488 dbSNP
rs1406948970 1491 dbSNP
rs1405715408 1492 dbSNP
rs1045014332 1493 dbSNP
rs202203042 1500 dbSNP
rs901354501 1502 dbSNP
rs781154508 1503 dbSNP
rs1317264661 1505 dbSNP
rs111968566 1506 dbSNP
rs867042231 1506 dbSNP
rs984653513 1510 dbSNP
rs948933315 1514 dbSNP
rs1376812451 1515 dbSNP
rs1323644027 1516 dbSNP
rs1423943829 1517 dbSNP
rs1282764881 1519 dbSNP
rs942763976 1519 dbSNP
rs1049165469 1520 dbSNP
rs1290626283 1523 dbSNP
rs1451355030 1525 dbSNP
rs1390840130 1532 dbSNP
rs1317514689 1533 dbSNP
rs1344478503 1533 dbSNP
rs1457748069 1533 dbSNP
rs34148395 1533 dbSNP
rs58748048 1533 dbSNP
rs869302784 1533 dbSNP
rs1192830332 1534 dbSNP
rs1445482386 1542 dbSNP
rs1479547615 1544 dbSNP
rs1051604523 1546 dbSNP
rs1192063807 1546 dbSNP
rs1489490456 1549 dbSNP
rs1349945000 1552 dbSNP
rs533151376 1553 dbSNP
rs1215643735 1555 dbSNP
rs911222371 1572 dbSNP
rs1043479864 1576 dbSNP
rs563027223 1577 dbSNP
rs1222078116 1579 dbSNP
rs1323342355 1592 dbSNP
rs1301531179 1597 dbSNP
rs913118273 1604 dbSNP
rs988759446 1608 dbSNP
rs1220635809 1615 dbSNP
rs1359227164 1628 dbSNP
rs1287803294 1634 dbSNP
rs1435673299 1640 dbSNP
rs1390766211 1642 dbSNP
rs944680520 1646 dbSNP
rs149715018 1648 dbSNP
rs1359567774 1649 dbSNP
rs1177034685 1653 dbSNP
rs1342301701 1655 dbSNP
rs1435156392 1656 dbSNP
rs985760828 1658 dbSNP
rs1450571949 1660 dbSNP
rs139646017 1662 dbSNP
rs1224858316 1663 dbSNP
rs914380808 1676 dbSNP
rs1332402565 1679 dbSNP
rs1257004116 1686 dbSNP
rs779058819 1686 dbSNP
rs1305437491 1689 dbSNP
rs1404065730 1692 dbSNP
rs1363662548 1699 dbSNP
rs377028592 1714 dbSNP
rs1312794052 1715 dbSNP
rs1015915877 1717 dbSNP
rs1379569011 1721 dbSNP
rs1304407793 1726 dbSNP
rs1467717561 1735 dbSNP
rs570927730 1748 dbSNP
rs1168257574 1753 dbSNP
rs1397376060 1756 dbSNP
rs572411160 1757 dbSNP
rs1031393126 1764 dbSNP
rs950429817 1780 dbSNP
rs753622240 1782 dbSNP
rs1026285835 1791 dbSNP
rs1474552837 1792 dbSNP
rs180893841 1799 dbSNP
rs188430464 1800 dbSNP
rs1023240777 1801 dbSNP
rs1019833688 1806 dbSNP
rs1480344877 1807 dbSNP
rs184781895 1811 dbSNP
rs752342548 1829 dbSNP
rs1314543695 1832 dbSNP
rs887986996 1836 dbSNP
rs1372430297 1848 dbSNP
rs1307613533 1849 dbSNP
rs1208000491 1850 dbSNP
rs1483657997 1858 dbSNP
rs1372431010 1864 dbSNP
rs1161785446 1881 dbSNP
rs1049221600 1885 dbSNP
rs193028138 1886 dbSNP
rs1167611467 1888 dbSNP
rs767022407 1895 dbSNP
rs188528422 1904 dbSNP
rs1256172503 1907 dbSNP
rs1040413010 1911 dbSNP
rs113027760 1912 dbSNP
rs891804356 1923 dbSNP
rs1208742797 1925 dbSNP
rs1356503758 1930 dbSNP
rs1267137545 1934 dbSNP
rs1236836143 1938 dbSNP
rs567848934 1943 dbSNP
rs1229202164 1952 dbSNP
rs938641960 1954 dbSNP
rs932559508 1958 dbSNP
rs1289969515 1963 dbSNP
rs1391596696 1970 dbSNP
rs1295779825 1971 dbSNP
rs1452290011 1973 dbSNP
rs111522342 1975 dbSNP
rs1473337047 1977 dbSNP
rs1335030633 1990 dbSNP
rs534116881 1991 dbSNP
rs948452365 1994 dbSNP
rs1404419050 1999 dbSNP
rs1203257750 2005 dbSNP
rs566869560 2006 dbSNP
rs370330351 2013 dbSNP
rs950399526 2014 dbSNP
rs1321228865 2020 dbSNP
rs76466321 2033 dbSNP
rs185663134 2046 dbSNP
rs771479795 2049 dbSNP
rs965652954 2050 dbSNP
rs1388571610 2054 dbSNP
rs1321878894 2057 dbSNP
rs1232768726 2060 dbSNP
rs780759511 2063 dbSNP
rs1179076111 2067 dbSNP
rs866170446 2068 dbSNP
rs1443690849 2069 dbSNP
rs1019776032 2073 dbSNP
rs551058536 2076 dbSNP
rs952404554 2076 dbSNP
rs993645403 2076 dbSNP
rs773482420 2077 dbSNP
rs1040463171 2079 dbSNP
rs192599951 2079 dbSNP
rs1210560811 2080 dbSNP
rs1459796546 2082 dbSNP
rs1277684179 2083 dbSNP
rs770147928 2112 dbSNP
rs1345986303 2118 dbSNP
rs1320902909 2120 dbSNP
rs889161073 2125 dbSNP
rs758808396 2128 dbSNP
rs1228739236 2129 dbSNP
rs746271211 2130 dbSNP
rs562204601 2134 dbSNP
rs1349902613 2135 dbSNP
rs1022095914 2137 dbSNP
rs867491195 2138 dbSNP
rs1333953872 2141 dbSNP
rs1414615520 2148 dbSNP
rs1403919532 2151 dbSNP
rs1165850312 2154 dbSNP
rs3013783 2157 dbSNP
rs1390303741 2161 dbSNP
rs1342413634 2162 dbSNP
rs946706680 2162 dbSNP
rs1236618815 2163 dbSNP
rs893073766 2164 dbSNP
rs2919694 2171 dbSNP
rs1053085850 2172 dbSNP
rs1341514151 2176 dbSNP
rs1275467861 2179 dbSNP
rs1231201154 2180 dbSNP
rs560474840 2192 dbSNP
rs934504617 2193 dbSNP
rs938591114 2194 dbSNP
rs768995317 2216 dbSNP
rs545286095 2217 dbSNP
rs1044307398 2219 dbSNP
rs186725591 2222 dbSNP
rs1161861750 2234 dbSNP
rs1401597800 2243 dbSNP
rs1305774915 2247 dbSNP
rs555837098 2248 dbSNP
rs924427785 2249 dbSNP
rs1370595844 2250 dbSNP
rs548172219 2251 dbSNP
rs1157380589 2267 dbSNP
rs981248861 2274 dbSNP
rs909053513 2286 dbSNP
rs544302545 2287 dbSNP
rs915628494 2292 dbSNP
rs1231008472 2298 dbSNP
rs991575162 2300 dbSNP
rs951690880 2302 dbSNP
rs1027885034 2306 dbSNP
rs972273650 2309 dbSNP
rs971389832 2310 dbSNP
rs1252543068 2311 dbSNP
rs141215968 2313 dbSNP
rs1182370339 2321 dbSNP
rs555040131 2324 dbSNP
rs900464363 2344 dbSNP
rs1009028965 2346 dbSNP
rs889209246 2349 dbSNP
rs1459728065 2350 dbSNP
rs1249450069 2355 dbSNP
rs1029050187 2359 dbSNP
rs1227327881 2364 dbSNP
rs148211278 2365 dbSNP
rs975774712 2366 dbSNP
rs1054405536 2367 dbSNP
rs1433674670 2368 dbSNP
rs1281884370 2370 dbSNP
rs1230011520 2380 dbSNP
rs1348837363 2380 dbSNP
rs1324097410 2387 dbSNP
rs965721257 2391 dbSNP
rs903059742 2392 dbSNP
rs370112536 2396 dbSNP
rs915661600 2410 dbSNP
rs1184693662 2419 dbSNP
rs991232937 2423 dbSNP
rs1246225199 2430 dbSNP
rs780258561 2431 dbSNP
rs1453840672 2435 dbSNP
rs912791054 2437 dbSNP
rs1208484472 2438 dbSNP
rs867461106 2442 dbSNP
rs566708484 2447 dbSNP
rs930340507 2450 dbSNP
rs1289804460 2462 dbSNP
rs985718992 2465 dbSNP
rs1217171993 2470 dbSNP
rs796220195 2472 dbSNP
rs954316788 2479 dbSNP
rs558052290 2480 dbSNP
rs1345037796 2483 dbSNP
rs962271392 2484 dbSNP
rs1457567251 2486 dbSNP
rs1019160211 2488 dbSNP
rs1316608215 2490 dbSNP
rs754538201 2495 dbSNP
rs988059635 2496 dbSNP
rs1424465587 2499 dbSNP
rs953549497 2510 dbSNP
rs539697914 2512 dbSNP
rs1386362540 2525 dbSNP
rs1246725938 2526 dbSNP
rs1021835712 2536 dbSNP
rs1188535363 2557 dbSNP
rs569245216 2564 dbSNP
rs867146630 2570 dbSNP
rs1426128839 2572 dbSNP
rs1029514991 2574 dbSNP
rs12044574 2580 dbSNP
rs1311252568 2592 dbSNP
rs1012068601 2595 dbSNP
rs1010980954 2602 dbSNP
rs893848014 2615 dbSNP
rs1362485188 2623 dbSNP
rs956180582 2627 dbSNP
rs1435786885 2642 dbSNP
rs999488558 2646 dbSNP
rs1474872441 2647 dbSNP
rs374123160 2653 dbSNP
rs1177145786 2654 dbSNP
rs1223407224 2655 dbSNP
rs1388456180 2659 dbSNP
rs1490501361 2666 dbSNP
rs1450667479 2671 dbSNP
rs1264213310 2676 dbSNP
rs796510386 2677 dbSNP
rs1220126584 2678 dbSNP
rs1483159759 2684 dbSNP
rs1357419595 2686 dbSNP
rs1237688480 2687 dbSNP
rs1211848008 2691 dbSNP
rs1273314154 2692 dbSNP
rs1228967691 2693 dbSNP
rs1299913013 2694 dbSNP
rs1385547427 2697 dbSNP
rs1310560470 2698 dbSNP
rs1395235516 2701 dbSNP
rs1361451865 2702 dbSNP
rs1303627106 2708 dbSNP
rs1268821205 2718 dbSNP
rs1163368435 2721 dbSNP
rs1168038615 2721 dbSNP
rs1189562918 2721 dbSNP
rs1205239359 2721 dbSNP
rs1368737220 2721 dbSNP
rs1415038670 2721 dbSNP
rs1416883752 2721 dbSNP
rs1423566435 2721 dbSNP
rs372071614 2721 dbSNP
rs551706607 2721 dbSNP
rs751131014 2721 dbSNP
rs767078649 2721 dbSNP
rs1481368188 2722 dbSNP
rs1045626413 2723 dbSNP
rs1244040187 2723 dbSNP
rs1263579887 2723 dbSNP
rs1014524740 2724 dbSNP
rs1235293386 2724 dbSNP
rs1322052827 2724 dbSNP
rs1438993626 2724 dbSNP
rs1366561664 2726 dbSNP
rs1410508026 2726 dbSNP
rs529287586 2743 dbSNP
rs1002803102 2754 dbSNP
rs1457861390 2758 dbSNP
rs1423289514 2759 dbSNP
rs907224222 2770 dbSNP
rs1170468519 2785 dbSNP
rs1044256643 2790 dbSNP
rs1012837498 2794 dbSNP
rs930392715 2795 dbSNP
rs887604354 2797 dbSNP
rs543287017 2798 dbSNP
rs1192725456 2805 dbSNP
rs1480667678 2816 dbSNP
rs1209128314 2818 dbSNP
rs149609781 2819 dbSNP
rs370847470 2831 dbSNP
rs527501571 2835 dbSNP
rs1197269425 2839 dbSNP
rs1483987428 2849 dbSNP
rs377658872 2852 dbSNP
rs1328296916 2853 dbSNP
rs560358091 2855 dbSNP
rs918986260 2856 dbSNP
rs1040161343 2860 dbSNP
rs944322059 2861 dbSNP
rs11577252 2890 dbSNP
rs545323214 2891 dbSNP
rs1328598471 2892 dbSNP
rs1307158557 2893 dbSNP
rs912149372 2895 dbSNP
rs910223421 2896 dbSNP
rs987722429 2897 dbSNP
rs986115055 2898 dbSNP
rs1455048714 2905 dbSNP
rs1375360051 2906 dbSNP
rs954355050 2907 dbSNP
rs1197568812 2910 dbSNP
rs796663385 2913 dbSNP
rs914714270 2915 dbSNP
rs1225550866 2924 dbSNP
rs1346616738 2925 dbSNP
rs1243479448 2928 dbSNP
rs1254545786 2931 dbSNP
rs1464257655 2931 dbSNP
rs781547373 2931 dbSNP
rs953704999 2934 dbSNP
rs1371866377 2936 dbSNP
rs533036184 2940 dbSNP
rs1403656435 2946 dbSNP
rs922117307 2948 dbSNP
rs990359357 2950 dbSNP
rs562791191 2952 dbSNP
rs989604779 2955 dbSNP
rs1399598905 2960 dbSNP
rs1171705550 2962 dbSNP
rs1466079196 2962 dbSNP
rs1396414239 2983 dbSNP
rs956420647 2990 dbSNP
rs138595727 2996 dbSNP
rs1166588688 2998 dbSNP
rs1298279341 3001 dbSNP
rs1448824715 3006 dbSNP
rs958113213 3010 dbSNP
rs12023569 3013 dbSNP
rs1352234243 3020 dbSNP
rs1177839483 3027 dbSNP
rs1031686483 3029 dbSNP
rs1002919148 3036 dbSNP
rs970733567 3040 dbSNP
rs1348615758 3042 dbSNP
rs1428409116 3045 dbSNP
rs1226743796 3069 dbSNP
rs971329827 3078 dbSNP
rs76319114 3079 dbSNP
rs894339060 3081 dbSNP
rs994594407 3081 dbSNP
rs1376702551 3089 dbSNP
rs898934068 3089 dbSNP
rs1176530982 3093 dbSNP
rs1036048039 3094 dbSNP
rs1390706301 3099 dbSNP
rs1169619487 3114 dbSNP
rs1013241733 3121 dbSNP
rs1471674484 3134 dbSNP
rs17034440 3135 dbSNP
rs1187052416 3137 dbSNP
rs911548643 3138 dbSNP
rs1049350813 3167 dbSNP
rs1205881936 3174 dbSNP
rs993315608 3181 dbSNP
rs539912879 3188 dbSNP
rs1274290713 3201 dbSNP
rs1216881159 3202 dbSNP
rs1354631536 3225 dbSNP
rs1040109029 3249 dbSNP
rs1257896608 3257 dbSNP
rs944479574 3264 dbSNP
rs1284007781 3279 dbSNP
rs1262919743 3290 dbSNP
rs1233448138 3302 dbSNP
rs1356990468 3304 dbSNP
rs910213507 3309 dbSNP
rs1050128800 3314 dbSNP
rs1319271703 3317 dbSNP
rs932880061 3319 dbSNP
rs114749882 3322 dbSNP
rs1330751255 3324 dbSNP
rs958167390 3324 dbSNP
rs990818127 3325 dbSNP
rs1389659184 3327 dbSNP
rs934794434 3330 dbSNP
rs1476096122 3332 dbSNP
rs924784426 3338 dbSNP
rs981488236 3339 dbSNP
rs971486886 3349 dbSNP
rs1391289691 3357 dbSNP
rs1370624316 3361 dbSNP
rs557890508 3364 dbSNP
rs978156258 3370 dbSNP
rs1289541321 3372 dbSNP
rs1452932669 3374 dbSNP
rs1404852133 3381 dbSNP
rs755874872 3391 dbSNP
rs540015575 3392 dbSNP
rs1024973091 3394 dbSNP
rs1227424382 3397 dbSNP
rs1373375004 3397 dbSNP
rs1012622220 3407 dbSNP
rs958656541 3416 dbSNP
rs1034199963 3430 dbSNP
rs569499244 3439 dbSNP
rs1462793798 3447 dbSNP
rs11828 3450 dbSNP
rs1157155503 3454 dbSNP
rs1400378503 3456 dbSNP
rs952155200 3473 dbSNP
rs1179041685 3487 dbSNP
rs535518161 3488 dbSNP
rs1027537849 3492 dbSNP
rs1246606002 3494 dbSNP
rs1491571849 3504 dbSNP
rs898985495 3505 dbSNP
rs1266658868 3509 dbSNP
rs1207636029 3523 dbSNP
rs1317154438 3526 dbSNP
rs767220313 3526 dbSNP
rs1461964202 3530 dbSNP
rs759169950 3537 dbSNP
rs751111567 3541 dbSNP
rs897659163 3543 dbSNP
rs1018822724 3546 dbSNP
rs201080853 3552 dbSNP
rs60229254 3552 dbSNP
rs1362723389 3555 dbSNP
rs890159486 3557 dbSNP
rs1051443124 3558 dbSNP
rs931608613 3562 dbSNP
rs1008637250 3563 dbSNP
rs1161640167 3577 dbSNP
rs900769909 3580 dbSNP
rs1394579890 3583 dbSNP
rs1174768578 3584 dbSNP
rs765835389 3589 dbSNP
rs1246508851 3592 dbSNP
rs763394643 3596 dbSNP
rs1246011301 3599 dbSNP
rs1381372479 3608 dbSNP
rs773711979 3620 dbSNP
rs936850106 3626 dbSNP
rs368375999 3630 dbSNP
rs1236319037 3639 dbSNP
rs1339991164 3646 dbSNP
rs147112301 3652 dbSNP
rs946377330 3653 dbSNP
rs978210374 3655 dbSNP
rs893472579 3656 dbSNP
rs1288007262 3658 dbSNP
rs1054676903 3661 dbSNP
rs934954902 3664 dbSNP
rs1446127789 3667 dbSNP
rs924776359 3676 dbSNP
rs1351501167 3712 dbSNP
rs1165577941 3714 dbSNP
rs1436723695 3717 dbSNP
rs949498937 3720 dbSNP
rs1445370045 3727 dbSNP
rs917960034 3733 dbSNP
rs981606019 3745 dbSNP
rs2788606 3747 dbSNP
rs915973735 3754 dbSNP
rs973282030 3767 dbSNP
rs963216625 3771 dbSNP
rs1212390288 3775 dbSNP
rs1481825766 3782 dbSNP
rs373038818 3794 dbSNP
rs991990417 3805 dbSNP
rs952040393 3808 dbSNP
rs1014709913 3810 dbSNP
rs1028108287 3811 dbSNP
rs1485191407 3816 dbSNP
rs1355042604 3826 dbSNP
rs1005086472 3829 dbSNP
rs1416662600 3831 dbSNP
rs1368841535 3836 dbSNP
rs1268641638 3839 dbSNP
rs1294647685 3863 dbSNP
rs1462976759 3865 dbSNP
rs1356576293 3866 dbSNP
rs1163140077 3869 dbSNP
rs1475119656 3873 dbSNP
rs890221024 3874 dbSNP
rs14946 3901 dbSNP
rs1471295908 3904 dbSNP
rs1249245833 3909 dbSNP
rs995878367 3922 dbSNP
rs1358188616 3941 dbSNP
rs1481582449 3950 dbSNP
rs961983415 3955 dbSNP
rs369011076 3956 dbSNP
rs1326579645 3965 dbSNP
rs1008709540 3968 dbSNP
rs551640850 3973 dbSNP
rs1235398712 3991 dbSNP
rs1348670415 3995 dbSNP
rs1306394119 3997 dbSNP
rs762303259 3999 dbSNP
rs1392424348 4011 dbSNP
rs1380268076 4016 dbSNP
rs1292363623 4030 dbSNP
rs1461223758 4031 dbSNP
rs1395739813 4037 dbSNP
rs1347141447 4044 dbSNP
rs1455320573 4046 dbSNP
rs936902759 4058 dbSNP
rs533147000 4059 dbSNP
rs543674424 4069 dbSNP
rs1042586469 4073 dbSNP
rs949553041 4079 dbSNP
rs918025274 4095 dbSNP
rs777122285 4106 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545212. RNA binding protein: AGO1. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' cgUCGAC-AGGCGGGUCUGUg 5'
            || || |::| |||  || 
Target 5' cuAGGUGCUUUG-CCAACCA- 3'
 		22 - 40
2 
miRNA  3' cgucgacAGGCGGGUCUGug 5'
                 |:| :|:: ||  
Target 5' ------cUUCUUCUGUACug 3'
 		1 - 14
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545212
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / Control
Location of target site ENST00000377223.1 | 3UTR | CUUCUUCUGUACUGUAAACUACUAGGUGCUUUGCCAACCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28544 Breast cancer -0.608 8.1e-4 -0.575 1.6e-3 24 Click to see details
GSE42095 Differentiated embryonic stem cells -0.471 1.2e-2 -0.666 2.6e-4 23 Click to see details
GSE28260 Renal cortex and medulla 0.587 1.7e-2 0.451 6.1e-2 13 Click to see details
GSE19350 CNS germ cell tumors -0.381 1.1e-1 -0.044 4.5e-1 12 Click to see details
GSE38226 Liver fibrosis 0.186 2.1e-1 0.260 1.3e-1 21 Click to see details
GSE32688 Pancreatic cancer -0.136 2.3e-1 -0.097 3.0e-1 32 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.147 2.4e-1 -0.085 3.4e-1 25 Click to see details
GSE26953 Aortic valvular endothelial cells 0.103 3.2e-1 0.002 5.0e-1 24 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.099 3.4e-1 -0.068 3.9e-1 20 Click to see details
GSE21687 Ependynoma primary tumors 0.048 3.5e-1 0.006 4.8e-1 64 Click to see details
GSE21687 Ependynoma primary tumors 0.048 3.5e-1 0.006 4.8e-1 64 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
37 hsa-miR-1231 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT075228 PHF13 PHD finger protein 13 2 6
MIRT266936 HDGF heparin binding growth factor 2 6
MIRT441394 SOX5 SRY-box 5 2 2
MIRT446329 ATP5C1 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 2 2
MIRT446438 THYN1 thymocyte nuclear protein 1 2 2
MIRT482781 STIM1 stromal interaction molecule 1 2 2
MIRT497714 CYP1A1 cytochrome P450 family 1 subfamily A member 1 2 2
MIRT500907 STARD13 StAR related lipid transfer domain containing 13 2 2
MIRT503251 KIF18B kinesin family member 18B 2 2
MIRT504750 TEP1 telomerase associated protein 1 2 4
MIRT512158 CD164 CD164 molecule 2 6
MIRT518043 LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated 2 4
MIRT526038 GMDS GDP-mannose 4,6-dehydratase 2 2
MIRT529828 ARGFX arginine-fifty homeobox 2 2
MIRT531808 POLD3 DNA polymerase delta 3, accessory subunit 2 2
MIRT533139 WNT10A Wnt family member 10A 2 2
MIRT538612 CCT5 chaperonin containing TCP1 subunit 5 2 4
MIRT555617 PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 2 2
MIRT561705 PTP4A1 protein tyrosine phosphatase type IVA, member 1 2 2
MIRT562301 GINM1 glycoprotein integral membrane 1 2 2
MIRT566732 MSH6 mutS homolog 6 2 2
MIRT569369 IMPG1 interphotoreceptor matrix proteoglycan 1 2 2
MIRT572314 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT574602 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT612023 FOXF2 forkhead box F2 2 2
MIRT616950 MAPKAPK2 mitogen-activated protein kinase-activated protein kinase 2 2 2
MIRT624175 DERL2 derlin 2 2 2
MIRT647634 FAIM2 Fas apoptotic inhibitory molecule 2 2 2
MIRT659393 CORO2A coronin 2A 2 2
MIRT659955 CXCL10 C-X-C motif chemokine ligand 10 2 2
MIRT684001 FOLR1 folate receptor 1 2 2
MIRT688143 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT688609 CYBRD1 cytochrome b reductase 1 2 2
MIRT693583 SLC39A1 solute carrier family 39 member 1 2 2
MIRT699922 RUFY2 RUN and FYVE domain containing 2 2 2
MIRT712961 PET117 PET117 homolog 2 2
MIRT723950 TMEM184A transmembrane protein 184A 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-1 Anthocyanin NULL 145858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Caffeic acid NULL 689043 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Catechin approved 9064 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Curcumin NULL 969516 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Ferulic acid NULL 445858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Hesperidin NULL 10621 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Quercetin NULL 5280343 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Galactose NULL 6036 Quantitative real-time PCR lens 22736950 2012 up-regulated
miR-1 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Quantitative real-time PCR myocardial differentiation of mouse ES cells 19521018 2009 down-regulated
miR-1 Sulfonyl-hydrazone-1 (SHZ) NULL NULL Quantitative real-time PCR Murine broblast-derived Induced pluripotent stem cells 21445862 2011 up-regulated
miR-1 Cocaine NULL 446220 Next-generation sequencing ventral striatum 21708909 2011 up-regulated
miR-1 Atorvastatin approved 60823 Quantitative real-time PCR Cardiomyocyte 23860036 2013 down-regualted
miR-1 Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-1 Docosahexaenoic acid NULL 445580 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 Palmitic acid approved 985 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 17beta-estradiol (E2) approved 5757 Microarray MCF-7AKT breast cancer cells 19528081 2009 down-regulated
miR-1 Essential amino acids (EAA) NULL NULL Quantitative real-time PCR skeletal muscle of young adults 19828686 2009 up-regulated
miR-1 Hydrogen peroxide (H2O2) NULL 784 Quantitative real-time PCR Human umbilical vein endothelial cells 21527937 2011 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Microarray apoptosis-resistant breast cancer cells 21971930 2011 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR acute promyelocytic leukemia 22072212 2012 up-regulated
miR-1 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miR-1 Bicalutamide approved 2375 Microarray prostate 22674191 2012 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR cardia 22889704 2012 up-regulated
miR-1 Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 up-regulated
miR-1 Quinidine approved 441074 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 up-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 down-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR post-infarction rat cardiomyocytes 21220930 2011 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 down-regulated
miR-1 Dexamethasone approved 5743 Microarray adrenals and granulosa cells 24205079 2014 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-1231 Cisplatin 5460033 NSC119875 approved sensitive High Lung Adenocarcinoma cell line (A549)
hsa-miR-1231 Aromatase Inhibitor sensitive Low Breast Cancer cell line (MCF-7)
hsa-miR-1231 Dabrafenib 44462760 NSC764134 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-1231 Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-1231 Paclitaxel 36314 NSC125973 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-1231 Doxorubicin 31703 NSC123127 approved sensitive High Triple-Negative Breast Cancer cell line (MDA-MB-231, MDA-MB-468)
hsa-miR-1231 Fulvestrant 17756771 NSC719276 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-1231 Tamoxifen 2733525 NSC180973 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-1231 Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-1231 Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (A2780)
hsa-mir-1231 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-1231 Paclitaxel 36314 NSC125973 approved sensitive cell line (HS578T)
hsa-mir-1231 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-mir-1231 Androstenedione+Anastrozole sensitive cell line (MCF-7)
hsa-mir-1231 Cisplatin 5460033 NSC119875 approved resistant cell line (KYSE)
hsa-mir-1231 Fluorouracil 3385 NSC19893 approved sensitive cell line (KYSE)
hsa-mir-1231 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-1231 Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-1231 Paclitaxel 36314 NSC125973 approved resistant cell line (HS578T)
hsa-miR-1231 Paclitaxel 36314 NSC125973 approved sensitive cell line (BAS)
hsa-miR-1231 Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-1231 Doxorubicin 31703 NSC123127 approved resistant cell line (HS578T)
hsa-miR-1231 Tamoxifen+Fulvestrant resistant cell line (LCC9)
hsa-miR-1231 Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-miR-1231 Fluorouracil 3385 NSC19893 approved resistant cell line (KM12C) (72 h)
hsa-miR-1231 Paclitaxel 36314 NSC125973 approved sensitive cell line (PC3PR70)
hsa-miR-1231 Paclitaxel 36314 NSC125973 approved sensitive cell line (PC3PR20)
hsa-miR-1231 Paclitaxel 36314 NSC125973 approved sensitive cell line (PC3PR200)
hsa-miR-1231 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-1231 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-1231 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)
hsa-miR-1231 Cisplatin 5460033 NSC119875 approved sensitive cell line (H460)
hsa-miR-1231 Cisplatin 5460033 NSC119875 approved resistant cell line (OVCAR3)

Error report submission