pre-miRNA Information
pre-miRNA hsa-mir-4280   
Genomic Coordinates chr5: 87114879 - 87114954
Description Homo sapiens miR-4280 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4280
Sequence 11| GAGUGUAGUUCUGAGCAGAGC |31
Evidence Experimental
Experiments SOLiD
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1267452683 6 dbSNP
rs921418201 13 dbSNP
rs975577876 15 dbSNP
rs562687273 20 dbSNP
rs968639930 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Gene Information
Gene Symbol Map1b   
Synonyms A230055D22, AI843217, LC1, MAP5, Mtap-5, Mtap1b, Mtap5
Description microtubule-associated protein 1B
Transcript NM_008634   
Expression
Putative miRNA Targets on Map1b
3'UTR of Map1b
(miRNA target sites are highlighted)
>Map1b|NM_008634|3'UTR
   1 AGACCGCAGCCGGCCACACCACAGGATTTGAACTGTGTTTCCAGAAATTCTTGAATTTGAAACTACCTTTTCTAAAACGT
  81 CCATTCATCCAATTAAGTCACTGAACAGTTATTACCTGCCAGATGCTATACTATGTCATGGTGATGCAAGTCACTGATAG
 161 TTCTCAATTTTTGCTGACTGCTAAGGGAAGTAACCATATTCCCACAATAGATTTCGAGTTACTGCAAAATTGCCTACCCC
 241 CGTTCATCTCTGCTGAACATTCGGAAGCCATGCACTCACGCACCCAACTGACTTCTGCTAGGTATTGGCATTTATCATAG
 321 AGAGAGAAAGAGAGGGAAAGAGAGTCAGCGGGAGGGGAGGGAGAGAGGCGGGAGAGAGGGACAAAGAGACTGCAGGAGAG
 401 AGAGAGAGAGTGAGAGGGGAAGAATCAGAAAGAAAAAGAATGCAAGAGACAAAGGTAGAGAGTTCTGATGAGATGCCCAG
 481 GGAGAGAGAGTGGGCAAGATGGGGTATAGAGAAGACACCAGCAACCAGGTCTGCATTTTCTCAGACCACAGCTATTCTGT
 561 GGTCTACACAGGTGGAGTTTCCCATTTTCATCAGAGTCATCAGAAAGAGTCTTATTCTCCTAAAGCGTGTTTCTAAAGAA
 641 CAAAAAGAATGAAGCCTGTTACGAGGGCATGAGCTTTTTCACGCCTTAATTCAATGCCTTTGCTATTATAAAGGCTGCAC
 721 ACGGCATAATGTAGCAAGTGTAGACTGGATGAGTGAGTGGTTTGCGCCCCATTCAGAACTCTCAGACTTTTCGAACACGT
 801 GAGTAGGTTGATCTAAGGCATGCTCCCAGCATTTGTCTACCCAAGTCCACACCAAGTCAAGCTGCATGCAGCAACACCCA
 881 AGTCCACCCCGGTTAACTGAAGCAAATACCAAAGCAGGTGGGAGTACACATGGGAGACATTTTGCCTTAGGAAGTGACTT
 961 GAATGTACAAAGACACCTGATGCACTTATTTTTTAATGTGAGACAGCAAGTTTTTAAACCATCCATGTAGGATTGTAGAT
1041 ACTCCAGGGAAAGGAGCGTGTGGGGAGGGAAGGTACCAGAAGCTCATCTGATTGGCCCAACGGTTTAGTGCAGAGTCATG
1121 CTTGGTGAACATCACCACTTCTGATGTACCCGTGGCCACTCAACCAAATCCGTTGCACCTTTCGTAGCTTCTTTAATTCT
1201 TCAAGTTCAAGACCGGAATGGCTTCTTTGATCAGAACCAGGAAAACAGTGAATCTTATGGTGGAAGAGCTCTCAGCAAGT
1281 GTACAGCATCTGCCTTCCTTTGTCTTGCATTGGCTATTTTAATTTTCCATTAATTTCAACACATGGGAACACATGTACAG
1361 AAGATTTTTTTTTTTTTTTTTTTTTTTTTTAGCTACTCGAGAACTTTTCATAGATGAACTTTTTAACAAATGTTTTCATT
1441 TACAGGAAAACGCAAAGAAAATTTTGAAACGATGGTCTTTCTTTTTAATTATTATTTTAAGTGTTTTTTGTAAGACAAAA
1521 ATTGAAGTTTTTTTAAGGTTCTGGCAAGATTTGAAGTCTGATATTGAAGTCATGATATTTATTTTTAAAAACCTGTCACT
1601 ACCAGAAACGGTGGTACCTCCTGCCCTTTGACTCTCATACCGTGAAAGTTGAGTCCGTGCTGTTTGAGAGTGGGTAGGTG
1681 GCGGGGTAGGCTACTGTCCGGGGCATCACCCAGTGCTATCCCCTCCTCCTTTCAAGATTATTCACCATGAGGTAAAAGAG
1761 CCAAGTTCAGAAGTACCCTAGCACCCAGTTTGCTTGGGTTGGTTTTTTGTTTTTGTTTTTCCTGGAAAACATTCAGTGAG
1841 AGAAGTAATAGATTGAAAACAAATGAATTCTCAACTTCTATGTTGACCATGTAGAGAGTTCAGACATAATGTCTGTCGAT
1921 GTCATCACTGAACCACAGACTTGCGCCGCCAGATCGCGAGGAAAACTGTCGCCAAGTTTCAAGTGGCAGATTCACGTCCC
2001 AGGGTTCAGAGGTGGCAAACTTCTCAGTGGCAGCTGTGCTCGGTCATGCTACGTTTCCTGCAGACTCTTAAGATCTACGG
2081 GGTAGTGAACAATGACCTCATTTTATTTTCTATGTTAGTTATTTATTTCAAAATTTACATTTTAGTTTATTTTCGTCTGT
2161 AAAGCGTATGTTTCGCACTGCTCTTTTACTCTGAGGGTTTAAACAATATTTCTCCAGGGGTTTCCTCACTGAGAACCCAT
2241 GCAGTCTACTTAATGCTGTGAATCACATTTTCCAAATGTTTAATTTTTTAAAGAAAATTAATATTCTATTTTTGTTAGGT
2321 GTCTCTAGGAATGCAGCTTTTTTATTTATTATCCTGTTTCTTTCAAAACCCGTAACAGTGACACGTTAAAGGTACAAAAC
2401 TGTCCTATCTGATGGAAAAGTCATCCTGATGAAAACAGAGTTCGTTGCCTGTAAGCCCACTTGCTTCTCACTTCATCAGA
2481 CAAGCTCAATACACACAAGATAGTAATTTAATGGGAGCTGTTAGGCTGGTCCACACGTGAAGAGAAACAATTTCTAGCCT
2561 TCTTGCCAAATCCAGACCTCTGGTTGACTTTTCTTTCATAGAAGATGGAGTTATCTTCCAGTTTTCCAACTTAAATTTAT
2641 TTAGCCTTTATATTATTTTGTTTTAATATATATATATAAATACCTTAGAAGAGCCATAGCCAGCCTTCAGTTATAACCAC
2721 TCGACCCCCATACCTCTTATTGTTTCTACAGAATCTAATGGGGAAAAATGCTTCACAAAACTGTCACTGATCCATTGGCT
2801 CTGATTCCTACACAATCTGGCAGGCACCCTCCTGCACCCCTGTCCTCAGTGATGGCCACGGAGCCGAGCCGAGGACACCA
2881 GGGTGAAGTACATTTGCTTTACAAGGGGCTCCTGACCTCCCAGGCACCTCTCCTACCTGTGTGGCTAATCTGATCTTGCT
2961 AGTTCCATACATACACAATTAGTTTAGAGGTAGCCACCACAATGGGACCGTGTACATTTGTGGTGAAAGCTAAAAACCGA
3041 CACAGACTTCTAGAAGATTTGTGCATACGATTCTTAATCCAATTGTATAGATTGAATATTTGAGTGGAAGGCATTTCCAC
3121 CCTGTTTAAATGATGGAATTCTATTGAGCTAGCACTCCTGATCATGACCTTTTTAGTAGTATTTGTAAACAAAATTCTAC
3201 AGAGACTAAATCTTAGCGATAATCCTCCATTTCAATTTTAACCAATTCTGTCCTCTTTTTCCAAACCCCGAACCCCATGC
3281 ATGCTTTCTCAGTCTTGTGATGGGACTGGACACAGTGACCGACCCCTCGCCCAAACACCATTTTCCATGGAATTCAAAAG
3361 AAAATTTTTTTCCCTTAACGTTACATATCATAGTGAATGGTTTCCCCAGTGTATATGAATGTTTTAAGTGTTTCCAATAG
3441 CTTATGAAATTTAGGAGCTTTCTAATACTCGTTTTATAAATTTAATCATTTGCTAATGGAAATTTTACCACCTCCCACTT
3521 CTGTTACAAATCTTAGCTCCCGGAGCGGCGCTACAATTCCAGAGTTGTTCTGCTCACCCCCCTCTGTCATTTGTCACAGG
3601 AGGTCCCTGCTTGGCAATGACATTTGTGAGTTAGGATAATGACTTTCCTTCTCTTCTTTTTTTCCTTTCGTACTTAAGAT
3681 TTAGGAGAAAAAGATTCTGTTTCCACCTGAGAGGAACTGTAAGCTTTTATCATTTAACCAGCTGAACACCACACCAAAAG
3761 CAGCCTACGGATGAGCACCGCTTTGGTAGCAATTAGGTTTTATTCACCTGGTATTAAAACTATTCACTATTTCAAAACAA
3841 AAACAAAAACCGAGACTTTATGAATTCATTTCAAGGCAGCATCAAAAAACTGAAAAGGAAGGAAAACAACAACAGCTAAT
3921 AATCGGCTTCTCCGCACGTGTGGAGCTCCGGAGAAACAGGCGCCCCGGAGAAGTGGCTCTGCTCAGCCGCCCGCCCACGC
4001 CGCGCCGCCGGTCCTTGCTTTCCCGCATGCGCCCGCCCGCGGCAACGTGCAGTCCTACGTCCGGCTGCGGAGAAGTCCAC
4081 TCTCTCTCTTGTTATGAATGGTGTTTGTGTCGGTCTGCAGCTGTGTATGGTATTATGTCTTATAATCCTGCATCACTTCC
4161 ATCCTATCCAGTCATATCTAATGTAGAAAAATTAGTTTCCAGTGAAAGTAATATGTAGTGCTTTTATGATATTTGTGTGC
4241 AATATCCCCTCTTCTATCAAGGATATTTGATGTAAAGGAAAAACAAACAAACAAACAACAGAAACTCAGTTCCACAATAA
4321 AATACAAAGTGGCAAAAGTTCA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cgaGACGAGUCU-UGAUGUGAg 5'
             |||| |||| :|||:||| 
Target 5' tacCTGC-CAGATGCTATACTa 3'
113 - 133 149.00 -18.70
2
miRNA  3' cgAGACGAGUCU--UGAUGUGag 5'
            |: |||| ||   ||||||  
Target 5' caTTGGCTCTGATTCCTACACaa 3'
2793 - 2815 137.00 -14.60
3
miRNA  3' cgAGACGAGUCUUGAUGUGag 5'
            ||||:   |: ||||||  
Target 5' atTCTGT---GGTCTACACag 3'
554 - 571 132.00 -11.60
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HS27a , HUVEC
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP聽 data was present in GSM1013106. RNA binding protein: AGO. Condition:HS27a-replicate-2 HITS-CLIP聽 data was present in GSM1013111. RNA binding protein: AGO. Condition:HUVEC-replicate-2 ...

- Balakrishnan I; Yang X; Brown J; et al., 2014, Stem cells (Dayton, Ohio).

Article - Balakrishnan I; Yang X; Brown J; et al.
- Stem cells (Dayton, Ohio), 2014
Regulation of hematopoietic stem cell proliferation, lineage commitment, and differentiation in adult vertebrates requires extrinsic signals provided by cells in the marrow microenvironment (ME) located within the bone marrow. Both secreted and cell-surface bound factors critical to this regulation have been identified, yet control of their expression by cells within the ME has not been addressed. Herein we hypothesize that microRNAs (miRNAs) contribute to their controlled expression. MiRNAs are small noncoding RNAs that bind to target mRNAs and downregulate gene expression by either initiating mRNA degradation or preventing peptide translation. Testing the role of miRNAs in downregulating gene expression has been difficult since conventional techniques used to define miRNA-mRNA interactions are indirect and have high false-positive and negative rates. In this report, a genome-wide biochemical technique (high-throughput sequencing of RNA isolated by cross-linking immunoprecipitation or HITS-CLIP) was used to generate unbiased genome-wide maps of miRNA-mRNA interactions in two critical cellular components of the marrow ME: marrow stromal cells and bone marrow endothelial cells. Analysis of these datasets identified miRNAs as direct regulators of JAG1, WNT5A, MMP2, and VEGFA; four factors that are important to ME function. Our results show the feasibility and utility of unbiased genome-wide biochemical techniques in dissecting the role of miRNAs in regulation of complex tissues such as the marrow ME.
LinkOut: [PMID: 24038734]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_005909 | 3UTR | GGAUAAUAACUUUUUUUUUUUGUGCUUCAGAUUUAGAAGAAAAGAUCCUGUUUCCAUUUGAAAGGAACUGUAAGCUUUUAUCUUUUAACCAACUGAACAAUACACCAAAAGCAGCCUAGGGAUGAGCAUUUCUUUGAAAGCAAUUAGGUUAUUCACCUGGUAUUAAAACUAUUUACUGUUAAAAAAUCUGUGACUUCAUGAAGUUGAUUUUUAAAGGCAGCAUCAAAAACUGAAAAGGAAGGGAAAAAAUAGGCAGCUUCUCUGCACUUGUUUGGAGCUCCCCAAAACAGGAGCCAUGGAGAAGUGGCAUCAAGACCGGGCUGCCCUUUCGAGAACACCCUGUGGCAGUUCAGAGACACGCUUUUCCUACACUGCAUGCAGCCCCUCUUUCCAGCACUGGAAAGAAGUGGUCUUGAGCCCAGCUGAGAAGCACUUCACACUCCUCUCUCUUGUUCUGAAUGGUGUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_005909 | 3UTR | AGCUUUCCAAUACUCAUUUAAUUAAGAUUUAAUCAUUUGCUAAUGGAAAUCUUACCACCUUUCAUUUUCCCUCUGUUACCAAAUUUCAGCUCUUAGGAGCUGCUCUACAAUUCUGAAUUUGCUUUUCUUGCCUCUCUUUAGUCACCUGUCACAGGAGGUUCCUGCUCAGUAAUGAUAUUGUGAGUUAGGAUAAUAACUUUUUUUUUUUGUGCUUCAGAUUUAGAAGAAAAGAUCCUGUUUCCAUUUGAAAGGAACUGUAAGCUUUUAUCUUUUAACCAACUGAACAAUACACCAAAAGCAGCCUAGGGAUGAGCAUUUCUUUGAAAGCAAUUAGGUUAUUCACCUGGUAUUAAAACUAUUUACUGUUAAAAAAUCUGUGACUUCAUGAAGUUGAUUUUUAAAGGCAGCAUCAAAAACUGAAAAGGAAGGGAAAAAAUAGGCAGCUUCUCUGCACUUGUUUGGAGCUCCCCAAAACAGGAGCCAUGGAGAAGUGGCAUCAAGACCGGGCUGCCCUUUCGAGAACACCCUGUGGCAGUUCAGAGACACGCUUUUCCUACACUGCAUGCAGCCCCUCUUUCCAGCACUGGAAAGAAGUGGUCUUGAGCCCAGCUGAGAAGCACUUCACACUCCUCUCUCUUGUUCUGAAUGGUGUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_005909 | 3UTR | GCUUAUGCAGUCUAGGAGCUUUCCAAUACUCAUUUAAUUAAGAUUUAAUCAUUUGCUAAUGGAAAUCUUACCACCUUUCAUUUUCCCUCUGUUACCAAAUUUCAGCUCUUAGGAGCUGCUCUACAAUUCUGAAUUUGCUUUUCUUGCCUCUCUUUAGUCACCUGUCACAGGAGGUUCCUGCUCAGUAAUGAUAUUGUGAGUUAGGAUAAUAACUUUUUUUUUUUGUGCUUCAGAUUUAGAAGAAAAGAUCCUGUUUCCAUUUGAAAGGAACUGUAAGCUUUUAUCUUUUAACCAACUGAACAAUACACCAAAAGCAGCCUAGGGAUGAGCAUUUCUUUGAAAGCAAUUAGGUUAUUCACCUGGUAUUAAAACUAUUUACUGUUAAAAAAUCUGUGACUUCAUGAAGUUGAUUUUUAAAGGCAGCAUCAAAAACUGAAAAGGAAGGGAAAAAAUAGGCAGCUUCUCUGCACUUGUUUGGAGCUCCCCAAAACAGGAGCCAUGGAGAAGUGGCAUCAAGACCGGGCUGCCCUUUCGAGAACACCCUGUGGCAGUUCAGAGACACGCUUUUCCUACACUGCAUGCAGCCCCUCUUUCCAGCACUGGAAAGAAGUGGUCUUGAGCCCAGCUGAGAAGCACUUCACACUCCUCUCUCUUGUUCUGAAUGGUGUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_005909 | 3UTR | UUAGGAUAAUAACUUUUUUUUUUUGUGCUUCAGAUUUAGAAGAAAAGAUCCUGUUUCCAUUUGAAAGGAACUGUAAGCUUUUAUCUUUUAACCAACUGAACAAUACACCAAAAGCAGCCUAGGGAUGAGCAUUUCUUUGAAAGCAAUUAGGUUAUUCACCUGGUAUUAAAACUAUUUACUGUUAAAAAAUCUGUGACUUCAUGAAGUUGAUUUUUAAAGGCAGCAUCAAAAACUGAAAAGGAAGGGAAAAAAUAGGCAGCUUCUCUGCACUUGUUUGGAGCUCCCCAAAACAGGAGCCAUGGAGAAGUGGCAUCAAGACCGGGCUGCCCUUUCGAGAACACCCUGUGGCAGUUCAGAGACACGCUUUUCCUACACUGCAUGCAGCCCCUCUUUCCAGCACUGGAAAGAAGUGGUCUUGAGCCCAGCUGAGAAGCACUUCACACUCCUCUCUCUUGUUCUGAAUGGUGUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_005909 | 3UTR | AUCUUUUAACCAACUGAACAAUACACCAAAAGCAGCCUAGGGAUGAGCAUUUCUUUGAAAGCAAUUAGGUUAUUCACCUGGUAUUAAAACUAUUUACUGUUAAAAAAUCUGUGACUUCAUGAAGUUGAUUUUUAAAGGCAGCAUCAAAAACUGAAAAGGAAGGGAAAAAAUAGGCAGCUUCUCUGCACUUGUUUGGAGCUCCCCAAAACAGGAGCCAUGGAGAAGUGGCAUCAAGACCGGGCUGCCCUUUCGAGAACACCCUGUGGCAGUUCAGAGACACGCUUUUCCUACACUGCAUGCAGCCCCUCUUUCCAGCACUGGAAAGAAGUGGUCUUGAGCCCAGCUGAGAAGCACUUCACACUCCUCUCUCUUGUUCUGAAUGGUGUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_005909 | 3UTR | UAAGAUUUAAUCAUUUGCUAAUGGAAAUCUUACCACCUUUCAUUUUCCCUCUGUUACCAAAUUUCAGCUCUUAGGAGCUGCUCUACAAUUCUGAAUUUGCUUUUCUUGCCUCUCUUUAGUCACCUGUCACAGGAGGUUCCUGCUCAGUAAUGAUAUUGUGAGUUAGGAUAAUAACUUUUUUUUUUUGUGCUUCAGAUUUAGAAGAAAAGAUCCUGUUUCCAUUUGAAAGGAACUGUAAGCUUUUAUCUUUUAACCAACUGAACAAUACACCAAAAGCAGCCUAGGGAUGAGCAUUUCUUUGAAAGCAAUUAGGUUAUUCACCUGGUAUUAAAACUAUUUACUGUUAAAAAAUCUGUGACUUCAUGAAGUUGAUUUUUAAAGGCAGCAUCAAAAACUGAAAAGGAAGGGAAAAAAUAGGCAGCUUCUCUGCACUUGUUUGGAGCUCCCCAAAACAGGAGCCAUGGAGAAGUGGCAUCAAGACCGGGCUGCCCUUUCGAGAACACCCUGUGGCAGUUCAGAGACACGCUUUUCCUACACUGCAUGCAGCCCCUCUUUCCAGCACUGGAAAGAAGUGGUCUUGAGCCCAGCUGAGAAGCACUUCACACUCCUCUCUCUUGUUCUGAAUGGUGUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM1013106
Method / RBP HITS-CLIP  / AGO
Cell line / Condition HS27a / HS27a-replicate-2
Location of target site ENST00000296755.7 | 3UTR | CUACACUGCAUGCAGCCCCUCUUUCCAGCACUGGAAAGAAGUGGUCUUGAGCCCAGCUGAGAAGCACUUCACACUCCUCUCUCUUGUUCUGAAUGGUGUUUGUGUCAGUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 24038734 / GSE41272
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM1013111
Method / RBP HITS-CLIP  / AGO
Cell line / Condition HUVEC / HUVEC-replicate-2
Location of target site ENST00000296755.7 | 3UTR | UCCUACACUGCAUGCAGCCCCUCUUUCCAGCACUGGAAAGAAGUGGUCUUGAGCCCAGCUGAGAAGCACUUCACACUCCUCUCUCUUGUUCUGAAUGGUGUUUGUGUCAGUCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 24038734 / GSE41272
CLIP-seq Viewer Link
67 hsa-miR-4280 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT065612 DAZAP2 DAZ associated protein 2 2 10
MIRT084985 BACH1 BTB domain and CNC homolog 1 2 2
MIRT088053 UBXN2A UBX domain protein 2A 2 4
MIRT097327 SCAMP1 secretory carrier membrane protein 1 2 2
MIRT099148 MYLIP myosin regulatory light chain interacting protein 2 12
MIRT127042 FAM208B family with sequence similarity 208 member B 2 4
MIRT140479 BNIP2 BCL2 interacting protein 2 2 6
MIRT154889 GNAS GNAS complex locus 2 4
MIRT187983 MBD6 methyl-CpG binding domain protein 6 2 2
MIRT190440 EIF5 eukaryotic translation initiation factor 5 2 2
MIRT240673 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT295049 EVI5L ecotropic viral integration site 5 like 2 2
MIRT324749 ACER2 alkaline ceramidase 2 2 2
MIRT366075 FAM127A retrotransposon Gag like 8C 2 4
MIRT442625 LOX lysyl oxidase 2 2
MIRT445224 TYRP1 tyrosinase related protein 1 2 2
MIRT448967 CCNT2 cyclin T2 2 4
MIRT450137 PFN4 profilin family member 4 2 2
MIRT464350 USP46 ubiquitin specific peptidase 46 2 2
MIRT470460 PPP1R15B protein phosphatase 1 regulatory subunit 15B 2 2
MIRT473691 MAPK8 mitogen-activated protein kinase 8 2 4
MIRT480188 CALM2 calmodulin 2 2 6
MIRT486355 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT486708 TROVE2 TROVE domain family member 2 2 4
MIRT488337 SCD stearoyl-CoA desaturase 2 2
MIRT489322 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT491791 ZNF24 zinc finger protein 24 2 2
MIRT491970 USP37 ubiquitin specific peptidase 37 2 2
MIRT492029 TWF1 twinfilin actin binding protein 1 2 4
MIRT492063 TMEM245 transmembrane protein 245 2 2
MIRT492247 SLC39A9 solute carrier family 39 member 9 2 2
MIRT492254 SLC35F5 solute carrier family 35 member F5 2 2
MIRT492592 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT493436 KAT7 lysine acetyltransferase 7 2 2
MIRT493470 IPMK inositol polyphosphate multikinase 2 2
MIRT493639 HECTD1 HECT domain E3 ubiquitin protein ligase 1 2 2
MIRT493919 FAM127B retrotransposon Gag like 8A 2 4
MIRT494639 ARNTL aryl hydrocarbon receptor nuclear translocator like 2 2
MIRT500032 ABCF2 ATP binding cassette subfamily F member 2 2 8
MIRT504589 ADH1B alcohol dehydrogenase 1B (class I), beta polypeptide 2 4
MIRT505535 SP4 Sp4 transcription factor 2 6
MIRT507539 DNAJB6 DnaJ heat shock protein family (Hsp40) member B6 2 6
MIRT508846 TMCO1 transmembrane and coiled-coil domains 1 2 4
MIRT510488 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT511402 IFNAR2 interferon alpha and beta receptor subunit 2 2 6
MIRT523252 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT525939 C11orf74 chromosome 11 open reading frame 74 2 2
MIRT531453 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT533317 UNKL unkempt family like zinc finger 2 2
MIRT541034 STRBP spermatid perinuclear RNA binding protein 2 8
MIRT546734 RNF217 ring finger protein 217 2 2
MIRT555125 PTPRJ protein tyrosine phosphatase, receptor type J 2 2
MIRT556105 MOAP1 modulator of apoptosis 1 2 2
MIRT560205 AK4 adenylate kinase 4 2 2
MIRT561087 LLPH LLP homolog, long-term synaptic facilitation 2 2
MIRT566967 LBR lamin B receptor 2 2
MIRT567344 H3F3B H3 histone family member 3B 2 2
MIRT567863 DCAF12 DDB1 and CUL4 associated factor 12 2 2
MIRT574449 SCML2 Scm polycomb group protein like 2 2 2
MIRT575700 Map1b microtubule-associated protein 1B 2 2
MIRT651432 YIPF6 Yip1 domain family member 6 2 2
MIRT659728 CCDC93 coiled-coil domain containing 93 2 2
MIRT686937 SFT2D3 SFT2 domain containing 3 2 2
MIRT699385 SLC30A6 solute carrier family 30 member 6 2 2
MIRT710287 CSNK1G3 casein kinase 1 gamma 3 2 2
MIRT715123 PANK3 pantothenate kinase 3 2 2
MIRT721847 VLDLR very low density lipoprotein receptor 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4280 Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-4280 Platinum 23939 resistant tissue
hsa-miR-4280 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4280 Neoadjuvant chemotherapy resistant tissue (breast cancer)
hsa-miR-4280 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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