pre-miRNA Information | |
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pre-miRNA | mmu-mir-325 |
Genomic Coordinates | chrX: 105379082 - 105379179 |
Synonyms | Mirn325, mmu-mir-325, Mir325 |
Description | Mus musculus miR-325 stem-loop |
Comment | None |
RNA Secondary Structure | ![]() |
Mature miRNA Information | |
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Mature miRNA | mmu-miR-325-3p |
Sequence | 54| UUUAUUGAGCACCUCCUAUCAA |75 |
Evidence | Experimental |
Experiments | Cloned |
Putative Targets |
Gene Information | |||||||||||||||||||||
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Gene Symbol | Gemin8 | ||||||||||||||||||||
Synonyms | B130034M20Rik, B930082C09Rik, BC023488, gemin-8 | ||||||||||||||||||||
Description | gem nuclear organelle associated protein 8 | ||||||||||||||||||||
Transcript | NM_146238 | ||||||||||||||||||||
Expression | |||||||||||||||||||||
Putative miRNA Targets on Gemin8 | |||||||||||||||||||||
3'UTR of Gemin8 (miRNA target sites are highlighted) |
>Gemin8|NM_146238|3'UTR 1 GTCCTGGGCACCGGGACCCTAGGGAATGCATCACAGTTCCTAGCCTCTCCCTCTTCATCTCTTCTGGACATTTTTCAGAG 81 AAAGAGGCCTGTATACCAACATGGTGGATACAGTCTGTCAACAGGAGAGAGGTATACTGTTGCCAACACAAGGAATGTTC 161 ACTGACAAAGTGATAATTTATGTATTGTACTGGCTCTTGGTTTTCTCTTTAACAGTCCAGTTCATTGAAATTATTGCCTA 241 GCAATACTGCCTATTGTTTTGCATTTTTAATGTCCTTCTTTAAACCATCCAGAATGTCATAAAAGCCTTAAGCCACGTGT 321 CATTTATTCCTACATTTTTATTAGATATTTTCTTTATTTATATTTTAAATGTTATCCCCTTTCCTTGTTTCCCCTCCTTT 401 AAAAGCTCCCTATCCCCTGCTCCCCAGCCCACCCACTCCACATCCTGGCCCAGACATTCCTACATTTTTAGGCCAGTTTT 481 CATACAGTGCATGCTAGCTACAAACTTAAAATCTTCCTGCTTCCACCTCCCAAATGCTCGTTTGCAGGTTTGCACTGCCC 561 ACACTGAGCTTCTGTCCACGTATTTTCTGTGACTTTTTCTGTGGACCCCTCTGAAAACCATGTAAGTGAACAGTAAAAGA 641 AGTGGCACTGTGCAAGGTGTGGTAGCGCACGCCTTTAATCCCAGCACTCCGGAGGCAGAGGCAGGAGGATTTCTGAGTTC 721 GAGGCCAGCCTGGTCTACAAAGTAAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTTGGGGGGAAAAAAAAG 801 TGGCACTTGTTATTCTGCTAGGTGTCAGCCCGCATGCTCTATAAGACCTGAGAGTAAGTACTCTGGGCTTGGCAGGCCAT 881 GTTGTCTCATAACTGCCTAACCCTGTCTTTATAGCATAAAAACAGCCATAGTTACTGAATAAACAAATGAATGTGACTGT 961 GTTTCAATAAAATTTTATTTGTAAAAAAAAATAAAATAAAATAAAACAGGCT Target sites
Provided by authors
Predicted by miRanda
DRVs
SNPs
DRVs & SNPs
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miRNA-target interactions (Predicted by miRanda) |
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Experimental Support 1 for Functional miRNA-Target Interaction | |
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miRNA:Target | ---- |
Validation Method |
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Conditions | C2C12 |
Location of target site | 3'UTR |
Tools used in this research | TargetScan , miRTarCLIP , Piranha |
Original Description (Extracted from the article) |
...
HITS-CLIP data was present in GSM1385343. RNA binding protein: 聽AGO2. Condition:C2C12_DM_Ago2_CLIP-Seq_myotubes
... - Zhang X; Zuo X; Yang B; Li Z; Xue Y; Zhou et al., 2014, Cell. |
Article |
- Zhang X; Zuo X; Yang B; Li Z; Xue Y; Zhou et al. - Cell, 2014
MicroRNAs are well known to mediate translational repression and mRNA degradation in the cytoplasm. Various microRNAs have also been detected in membrane-compartmentalized organelles, but the functional significance has remained elusive. Here, we report that miR-1, a microRNA specifically induced during myogenesis, efficiently enters the mitochondria where it unexpectedly stimulates, rather than represses, the translation of specific mitochondrial genome-encoded transcripts. We show that this positive effect requires specific miR:mRNA base-pairing and Ago2, but not its functional partner GW182, which is excluded from the mitochondria. We provide evidence for the direct action of Ago2 in mitochondrial translation by crosslinking immunoprecipitation coupled with deep sequencing (CLIP-seq), functional rescue with mitochondria-targeted Ago2, and selective inhibition of the microRNA machinery in the cytoplasm. These findings unveil a positive function of microRNA in mitochondrial translation and suggest a highly coordinated myogenic program via miR-1-mediated translational stimulation in the mitochondria and repression in the cytoplasm.
LinkOut: [PMID: 25083871]
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27 mmu-miR-325-3p Target Genes:
Functional analysis:
ID![]() |
Target | Description | Validation methods |
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Strong evidence | Less strong evidence | |||||||||||
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MIRT054600 | Arc | activity regulated cytoskeletal-associated protein | ![]() |
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3 | 1 | |||||
MIRT577829 | Rinl | Ras and Rab interactor-like | ![]() |
1 | 1 | |||||||
MIRT577905 | Prr11 | proline rich 11 | ![]() |
1 | 1 | |||||||
MIRT578380 | Krtap6-1 | keratin associated protein 6-1 | ![]() |
1 | 1 | |||||||
MIRT578550 | Hsd17b1 | hydroxysteroid (17-beta) dehydrogenase 1 | ![]() |
1 | 1 | |||||||
MIRT578770 | Gemin8 | gem nuclear organelle associated protein 8 | ![]() |
1 | 1 | |||||||
MIRT580288 | Trhr | thyrotropin releasing hormone receptor | ![]() |
1 | 1 | |||||||
MIRT581518 | Ptprd | protein tyrosine phosphatase, receptor type, D | ![]() |
1 | 1 | |||||||
MIRT582779 | Kif1c | kinesin family member 1C | ![]() |
1 | 1 | |||||||
MIRT585752 | Stard6 | StAR-related lipid transfer (START) domain containing 6 | ![]() |
1 | 1 | |||||||
MIRT587310 | Ephx3 | epoxide hydrolase 3 | ![]() |
1 | 4 | |||||||
MIRT588735 | Taok3 | TAO kinase 3 | ![]() |
1 | 1 | |||||||
MIRT592550 | Mup7 | major urinary protein 7 | ![]() |
1 | 1 | |||||||
MIRT592592 | Mup13 | major urinary protein 13 | ![]() |
1 | 1 | |||||||
MIRT594207 | Wdr12 | WD repeat domain 12 | ![]() |
1 | 1 | |||||||
MIRT594462 | Epyc | epiphycan | ![]() |
1 | 1 | |||||||
MIRT594693 | Atp11b | ATPase, class VI, type 11B | ![]() |
1 | 1 | |||||||
MIRT594929 | Gjb2 | gap junction protein, beta 2 | ![]() |
1 | 1 | |||||||
MIRT594934 | Frem3 | Fras1 related extracellular matrix protein 3 | ![]() |
1 | 1 | |||||||
MIRT595784 | Hlf | hepatic leukemia factor | ![]() |
1 | 1 | |||||||
MIRT595846 | Set | SET nuclear oncogene | ![]() |
1 | 1 | |||||||
MIRT595897 | Cd69 | CD69 antigen | ![]() |
1 | 1 | |||||||
MIRT603010 | Klk8 | kallikrein related-peptidase 8 | ![]() |
1 | 1 | |||||||
MIRT603579 | Ppm1k | protein phosphatase 1K (PP2C domain containing) | ![]() |
1 | 1 | |||||||
MIRT604052 | Esf1 | ESF1 nucleolar pre-rRNA processing protein homolog | ![]() |
1 | 1 | |||||||
MIRT736870 | GHRHR | growth hormone releasing hormone receptor | ![]() |
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2 | 0 | ||||||
MIRT756335 | Gsdmd | gasdermin D | 3 | 1 |
miRNA-Drug Associations | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
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