pre-miRNA Information | |
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pre-miRNA | mmu-mir-350 |
Genomic Coordinates | chr1: 176772325 - 176772423 |
Synonyms | Mirn350, mmu-mir-350, Mir350 |
Description | Mus musculus miR-350 stem-loop |
Comment | Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons . |
RNA Secondary Structure |
Mature miRNA Information | |
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Mature miRNA | mmu-miR-350-3p |
Sequence | 61| UUCACAAAGCCCAUACACUUUC |82 |
Evidence | Experimental |
Experiments | Cloned |
Putative Targets |
Gene Information | |||||||||||
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Gene Symbol | Cd70 | ||||||||||
Synonyms | CD27LG, Cd27l, Tnfsf7, Tnlg8a | ||||||||||
Description | CD70 antigen | ||||||||||
Transcript | NM_011617 | ||||||||||
Expression | |||||||||||
Putative miRNA Targets on Cd70 | |||||||||||
3'UTR of Cd70 (miRNA target sites are highlighted) |
>Cd70|NM_011617|3'UTR
1 CCACAACTCCAGGATGACTTGTGAATATTTTTTTTCTTTTCAAGTTCTACGTATTTATAAATGTATATAGTACACATA
Target sites
Provided by authors
Predicted by miRanda
DRVs
SNPs
DRVs & SNPs
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miRNA-target interactions (Predicted by miRanda) |
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Experimental Support 1 for Functional miRNA-Target Interaction | |
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miRNA:Target | ---- |
Validation Method |
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Conditions | C2C12 |
Location of target site | 3'UTR |
Tools used in this research | TargetScan , miRTarCLIP , Piranha |
Original Description (Extracted from the article) |
...
HITS-CLIP data was present in GSM1385343. RNA binding protein: 聽AGO2. Condition:C2C12_DM_Ago2_CLIP-Seq_myotubes
... - Zhang X; Zuo X; Yang B; Li Z; Xue Y; Zhou et al., 2014, Cell. |
Article |
- Zhang X; Zuo X; Yang B; Li Z; Xue Y; Zhou et al. - Cell, 2014
MicroRNAs are well known to mediate translational repression and mRNA degradation in the cytoplasm. Various microRNAs have also been detected in membrane-compartmentalized organelles, but the functional significance has remained elusive. Here, we report that miR-1, a microRNA specifically induced during myogenesis, efficiently enters the mitochondria where it unexpectedly stimulates, rather than represses, the translation of specific mitochondrial genome-encoded transcripts. We show that this positive effect requires specific miR:mRNA base-pairing and Ago2, but not its functional partner GW182, which is excluded from the mitochondria. We provide evidence for the direct action of Ago2 in mitochondrial translation by crosslinking immunoprecipitation coupled with deep sequencing (CLIP-seq), functional rescue with mitochondria-targeted Ago2, and selective inhibition of the microRNA machinery in the cytoplasm. These findings unveil a positive function of microRNA in mitochondrial translation and suggest a highly coordinated myogenic program via miR-1-mediated translational stimulation in the mitochondria and repression in the cytoplasm.
LinkOut: [PMID: 25083871]
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27 mmu-miR-350-3p Target Genes:
Functional analysis:
ID | Target | Description | Validation methods | |||||||||
Strong evidence | Less strong evidence | |||||||||||
MIRT435011 | Lars2 | leucyl-tRNA synthetase, mitochondrial | 1 | 2 | ||||||||
MIRT577176 | Tet1 | tet methylcytosine dioxygenase 1 | 1 | 5 | ||||||||
MIRT577951 | Pole4 | polymerase (DNA-directed), epsilon 4 (p12 subunit) | 1 | 1 | ||||||||
MIRT579173 | Cd70 | CD70 antigen | 1 | 1 | ||||||||
MIRT580234 | Tsga10 | testis specific 10 | 1 | 1 | ||||||||
MIRT581630 | Prkaa1 | protein kinase, AMP-activated, alpha 1 catalytic subunit | 1 | 1 | ||||||||
MIRT584029 | D230025D16Rik | RIKEN cDNA D230025D16 gene | 1 | 1 | ||||||||
MIRT588424 | Zbtb6 | zinc finger and BTB domain containing 6 | 1 | 1 | ||||||||
MIRT588528 | Usp45 | ubiquitin specific petidase 45 | 1 | 2 | ||||||||
MIRT588917 | Skor1 | SKI family transcriptional corepressor 1 | 1 | 1 | ||||||||
MIRT589679 | Larp1 | La ribonucleoprotein domain family, member 1 | 1 | 2 | ||||||||
MIRT590168 | Elp4 | elongator acetyltransferase complex subunit 4 | 1 | 1 | ||||||||
MIRT593065 | Ehf | ets homologous factor | 1 | 1 | ||||||||
MIRT593183 | BC068281 | WD repeat and coiled coil containing | 1 | 4 | ||||||||
MIRT595160 | Cbfa2t3 | core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human) | 1 | 1 | ||||||||
MIRT596758 | Utp23 | UTP23 small subunit processome component | 1 | 1 | ||||||||
MIRT596783 | Ubxn2a | UBX domain protein 2A | 1 | 1 | ||||||||
MIRT597289 | Slc1a7 | solute carrier family 1 (glutamate transporter), member 7 | 1 | 1 | ||||||||
MIRT597494 | Rbm41 | RNA binding motif protein 41 | 1 | 1 | ||||||||
MIRT600204 | Ube2j2 | ubiquitin-conjugating enzyme E2J 2 | 1 | 1 | ||||||||
MIRT603448 | Ric3 | RIC3 acetylcholine receptor chaperone | 1 | 1 | ||||||||
MIRT604253 | Cercam | cerebral endothelial cell adhesion molecule | 1 | 1 | ||||||||
MIRT604915 | Iqcj | IQ motif containing J | 1 | 1 | ||||||||
MIRT605131 | Cnnm3 | cyclin M3 | 1 | 1 | ||||||||
MIRT605214 | Arnt | aryl hydrocarbon receptor nuclear translocator | 1 | 1 | ||||||||
MIRT605697 | Ifnar1 | interferon (alpha and beta) receptor 1 | 1 | 1 | ||||||||
MIRT606256 | Polr1e | polymerase (RNA) I polypeptide E | 1 | 1 |
miRNA-Drug Associations | |||||||||||||||||||||||||||||||||||||||||||||
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