miRTarBase - #MIRT580288


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pre-miRNA Information
pre-miRNA mmu-mir-325   
Genomic Coordinates chrX: 105379082 - 105379179
Synonyms Mirn325, mmu-mir-325, Mir325
Description Mus musculus miR-325 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA mmu-miR-325-3p
Sequence 54| UUUAUUGAGCACCUCCUAUCAA |75
Evidence Experimental
Experiments Cloned
Putative Targets

Gene Information
Gene Symbol Trhr   
Synonyms TRH-R1
Description thyrotropin releasing hormone receptor
Transcript NM_013696   
Expression
Putative miRNA Targets on Trhr
3'UTR of Trhr
(miRNA target sites are highlighted)		 
>Trhr|NM_013696|3'UTR
   1 AGAAGGCCATAAAGAACCCTATAATGTTCTTCATGTATATTTATTTCATAATTATGATCTCAAATAATTCAGCAACAGAT
  81 GTCTTCAGGCAAGTTACATACTGGGAAGCAGTTCACTATTAAGATTTTCAGCAACTTACGGACTACATCAAGTGACAAGT
 161 TTAACCTATGGTGTGCTTAATTCAAAACTCAAATAATCTTCTTTGACAAGAGTGATCATGGATGTGCGTACTCAAAGTTG
 241 TCATGTCAAAAATATGTAAATAGCATTCTTTTATACCAAGCAAATTCATGCTAACCAAATAAAATATGTTTATTTCATAT
 321 TTTAAGAATTATACCTAGAAAACTGAAAAAGGCTGAAATATGTAATACCAGTTAAGATGATACATTGTCTAAAACTATCA
 401 AATCTGGATGTAGCAAGACAAGAATTTAGTGACCAATAAACCACATAGTCAAATAATGACTGTAAGCCTTGATGGAGGTT
 481 CACACTGTAGAGTCTCAACTGGAATAATGGGAATGTGAAGCATATTGACAGTTATGCTAAGAGAATGGGGTAATCAGTAC
 561 TGTTGGCTAGCATCATTGCAAGCTTGCAAGTGACTCTCTCTTTATAGAAAAATGGACTCAGTTCTTGTGCATATAGCTTT
 641 TCTTTGACTGCCAAACAAGAGCGAATATGAACTTCTTCAAGAACATCTTGAACTGGTATTACTAAAATGAAATCTTTTTA
 721 AAAATTCAATATGACTCAGAACAGGATGGTTTCAACTGACCAAAGGTCTTCCTTCAGAAGTCAGTAAGAACATCGTGGTA
 801 CTGAAATGATACAGGATGGTACAATAAGGAAGCAAAATTTAATCCCTAGCCATGAGGACAAGCCATTCTTGGTTTGATAT
 881 ATACAAAAATTACTGGCATGTCTTTTCTTAATATGTCTCAAAAAATTGTCATTTGCTGGATGATGCTGAACACATTCTGA
 961 AAATCAATTTGTTCTGAGCCTCTACATATATGCTTCAAGACCCTTGAATAACCAATAACTCTAAATAGGCAAATAAACAG
1041 AAAACCCCATGTAGGACAAGCTCATTTCATGTTTGTATCCCACAAATTAAACTAAGATGATGAGCCTGACATTGACTTTC
1121 TGTTGAATGAGTGAATGAATGAATGAATGAATGAATGAATAAGTAAATTGATGAATCTCCAACTAAGAAATATAACCTAA
1201 AATTTTTGTGACTCCTGATTTTCCCATAGATTTCTTTACTATTATAAAACTTTATTGTTTTTTTCATCATTTTAAACCAT
1281 TCTCCTGGCTCATTAAAATGTACTATATTGTGTCAGAGAGTGGTCACAACTATCCCTGTGTATATATTGTGAGTGCAAAG
1361 TTCAATAGTACTCTCACATATCTCACCTAATTTAATAATGATCAAGATTATCACATATACTTTCAGAGAATGACAACATA
1441 TTATCACTGACATGTGAATAGAATGTGCAGAGTATATGATAGAGAGAGAAGTTGCATAATTTCAGACTACAAACATTAGA
1521 ATTCCTCATAGGGAAAAGAATATCAGGGGGTGATAGAGTAATTAGAACAACCTGTTAGGGAAGCTTGAAAGTTCTTTTAA
1601 GATTAGACCTGGTTTAGATAGTTAGGAAAAGCCAACTGATGTAAGAAAAGAAAGATGAGGAGGTGTAGGGTGAAAAGAAA
1681 AAACTCCAGGTGTTATGGGTATGTGTCCAGTACAGTGTGATTCATCAGAGATTGATTAACGCAAGCAACTAGGAGAAAGG
1761 AAAGGAAGGGAGGTAAAGTACTTCCTAGTGCTTATATTTGATGAGGAAATATTCATCCAGACACAGTAAATAGATGTGTA
1841 TATTAGTAAGCTGTCATGTATTTTCTGAACATTGTGAATTTCACTTATCTATAAAAAATATAGAATGCTATTTGTCTCCT
1921 AAGTGTTATAATTCTGTAAGTATCCTAAAGTCATAATTTTCCAAGTAAAAACTGTGCTGTATATGTATATATCTTTTCTA
2001 TATTACATTGTCGTTGTATATGGGGCATATTTATTTATGTATATATGATTCAGAGGCCCATAATAGCCACGAAGTTATCC
2081 AGTTATGCTAACCATAGAGATCCAAGATAGCTCATAGGTCCTTCATAAGCCTAAGCATCCGTATTAAATGTGAAACTGAT
2161 AAGCAGTGAAACTCCTTAGCTTCTAACCCCTTCTACCTGTTGACTTGCATGTTGCTTCTATTGTGCTCCTGAATGATTGA
2241 TTTCTTACAACATGCCTCTGAATGGTTTGGTTTCCTTTCACCAGTTGTAGAAAGCTGTATGCTGACTCATCTCATTGCTG
2321 GGAGATTAACCATTGTGTCCACATGAACAAAGAATCTTCTTTAAGAAAGTGCGATATTATGTGTTCTCTCTGCAGTGTGA
2401 AACTGTTTTTGTATGTGTATGTATGAGCAATAAAGTATCAAACTG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' aacUAUCCUCCACG-----AGUUAUUu 5'
             || | : ||||     ||||||: 
Target 5' tatATTGTGAGTGCAAAGTTCAATAGt 3'
 1343 - 1369 135.00 -7.76
2 
miRNA  3' aaCUA--UCCUCCACGAGUUAUUu 5'
            |||  |||| | |: |||||| 
Target 5' atGATACAGGATG-GTACAATAAg 3'
 806 - 828 133.00 -12.80
3 
miRNA  3' aacUAUCCUCCACG---AGUUAUUu 5'
             ||| || |||:   |:|:||| 
Target 5' taaATA-GATGTGTATATTAGTAAg 3'
 1827 - 1850 126.00 -6.40
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions C2C12
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1385343. RNA binding protein: 聽AGO2. Condition:C2C12_DM_Ago2_CLIP-Seq_myotubes ...

- Zhang X; Zuo X; Yang B; Li Z; Xue Y; Zhou et al., 2014, Cell.

Article - Zhang X; Zuo X; Yang B; Li Z; Xue Y; Zhou et al.
- Cell, 2014
MicroRNAs are well known to mediate translational repression and mRNA degradation in the cytoplasm. Various microRNAs have also been detected in membrane-compartmentalized organelles, but the functional significance has remained elusive. Here, we report that miR-1, a microRNA specifically induced during myogenesis, efficiently enters the mitochondria where it unexpectedly stimulates, rather than represses, the translation of specific mitochondrial genome-encoded transcripts. We show that this positive effect requires specific miR:mRNA base-pairing and Ago2, but not its functional partner GW182, which is excluded from the mitochondria. We provide evidence for the direct action of Ago2 in mitochondrial translation by crosslinking immunoprecipitation coupled with deep sequencing (CLIP-seq), functional rescue with mitochondria-targeted Ago2, and selective inhibition of the microRNA machinery in the cytoplasm. These findings unveil a positive function of microRNA in mitochondrial translation and suggest a highly coordinated myogenic program via miR-1-mediated translational stimulation in the mitochondria and repression in the cytoplasm.
LinkOut: [PMID: 25083871]
27 mmu-miR-325-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT054600 Arc activity regulated cytoskeletal-associated protein 3 1
MIRT577829 Rinl Ras and Rab interactor-like 1 1
MIRT577905 Prr11 proline rich 11 1 1
MIRT578380 Krtap6-1 keratin associated protein 6-1 1 1
MIRT578550 Hsd17b1 hydroxysteroid (17-beta) dehydrogenase 1 1 1
MIRT578770 Gemin8 gem nuclear organelle associated protein 8 1 1
MIRT580288 Trhr thyrotropin releasing hormone receptor 1 1
MIRT581518 Ptprd protein tyrosine phosphatase, receptor type, D 1 1
MIRT582779 Kif1c kinesin family member 1C 1 1
MIRT585752 Stard6 StAR-related lipid transfer (START) domain containing 6 1 1
MIRT587310 Ephx3 epoxide hydrolase 3 1 4
MIRT588735 Taok3 TAO kinase 3 1 1
MIRT592550 Mup7 major urinary protein 7 1 1
MIRT592592 Mup13 major urinary protein 13 1 1
MIRT594207 Wdr12 WD repeat domain 12 1 1
MIRT594462 Epyc epiphycan 1 1
MIRT594693 Atp11b ATPase, class VI, type 11B 1 1
MIRT594929 Gjb2 gap junction protein, beta 2 1 1
MIRT594934 Frem3 Fras1 related extracellular matrix protein 3 1 1
MIRT595784 Hlf hepatic leukemia factor 1 1
MIRT595846 Set SET nuclear oncogene 1 1
MIRT595897 Cd69 CD69 antigen 1 1
MIRT603010 Klk8 kallikrein related-peptidase 8 1 1
MIRT603579 Ppm1k protein phosphatase 1K (PP2C domain containing) 1 1
MIRT604052 Esf1 ESF1 nucleolar pre-rRNA processing protein homolog 1 1
MIRT736870 GHRHR growth hormone releasing hormone receptor 2 0
MIRT756335 Gsdmd gasdermin D 3 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-325 Mistletoe lectin-I NULL NULL Microarray colorectal cancer cells CLY cells 20955366 2011 down-regulated
miR-325 Mistletoe lectin-I NULL NULL Microarray colorectal cancer cells HT-29 cells 20955366 2011 down-regulated
miR-325 Cisplatin approved 84093 Microarray CNE cells 22614822 2012 up-regulated
miR-325 5-aminoimidazole-4-carboxamide-1-β-d-ribofuranoside (AICAR) NULL 16078949 Microarray hepatocytes 23107762 2013 up-regulated
miR-325-3p Urocortin 2 NULL 56843276 Quantitative real-time PCR anterior pituitary cells 22252941 2012 up-regulated

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