pre-miRNA Information
pre-miRNA mmu-mir-9-1   
Genomic Coordinates chr3: 88215598 - 88215686
Synonyms Mirn9, Mirn9-1, mmu-mir-9-1, Mir9-1
Description Mus musculus miR-9-1 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA mmu-mir-9-2   
Genomic Coordinates chr13: 83738814 - 83738885
Synonyms Mirn9-2, mmu-mir-9-2, Mir9-2
Description Mus musculus miR-9-2 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA mmu-mir-9-3   
Genomic Coordinates chr7: 79505264 - 79505353
Synonyms Mirn9-3, mmu-mir-9-3, Mir9-3
Description Mus musculus miR-9-3 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA mmu-miR-9-5p
Sequence 16| UCUUUGGUUAUCUAGCUGUAUGA |38
Evidence Experimental
Experiments Cloned
Putative Targets

Biomarker Information
Biomarker ID Name Type Discovered From Mode Level Source Testing Methods
BOS25P miR-9 Safety Biomarker (SAF) Clinical/Experimental Data Expression Increase Serum Real-time reverse transcription PCR
Gene Information
Gene Symbol Slc35g1   
Synonyms AA590464, D330039I19Rik, Tmem20
Description solute carrier family 35, member G1
Transcript NM_175507   
Expression
Putative miRNA Targets on Slc35g1
3'UTR of Slc35g1
(miRNA target sites are highlighted)
>Slc35g1|NM_175507|3'UTR
   1 AGTGTCACTGCTGAAACCTGGTTTTTATTTTCAAGTGTGCTGTCACCTAGCTCAGACATCTTGCACACCCACACACATAC
  81 CTGGAGAATCTTCATCACTCATTGGCTTTCTTTAATACCTTTCATAAAGTGCCATTTTTAAACATAGTGCGTTTTTAGTT
 161 AAGAGTAGCTAGCTAGCCGGGCGTGTTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGA
 241 GTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAAGGCTACACAGAGAAGCCCTGTCTCGAAAAACAAAA
 321 ACAAAAAAGAGTAGCTAGCTAGGCTAGCCTCACAGTCTGGATAGCTTTTATCTTTGCTTTGGCTCCTTGGTTGGGTTACC
 401 ATTGATGAGAAGGGAGCTCATTTGAGGAATTTCAGAAATTTTTATGAGTACAATTTTTAAAATTTATTTCTGACCCGGGA
 481 TGTGGATGGGAGATCCTCTATTTTAGCAGTGCACATAAGAAGCTCAACGTTGACAATGCTGCTCTAGTTAGTACTGTGCT
 561 AATCTGTTGATTGCAATATCATCCCACTTAGGATGCCAAAGCTGCAACTTGGTCTAGGTGCCTACCTACCCATAGGAGTA
 641 TAAGCGAACCAGCCTTATTCTCAAGGATCTTAGAGATGATTACTACACTTTTAACTCATGTGTGCCTTTTCGTTTTGATG
 721 CTGGGACTTTTTATATGTACTCTGAACAGAGCCTTCAGCTTGCCACATGTGGTTAGCAGTTCTCTCTTTCAGAATATTAA
 801 CAACTCTGGCTATCATTTTGAATTTCAGTTGTCTCCTGTTTTATTGAAATTGCACTTTTTTTTTAACATTCCGAGATTTC
 881 CAACCTTGAAATCATGAGAGCAAAATCTTGGCGTGATCAGTGTGTACATTCCCATCCTGAGGTGATTTCACTTCAGATGC
 961 GGTGGTTTTTCTACAAATTCTCTTTGAATTCATAGTGTGATGCCAAATACAATTTTTTTCTCAGGATTGTACTAGGCTGG
1041 GCCATTATCAGATTGCCCAGATTCTACCGTTTTCATTTTCAAAACCCACAGTTCTAGAAGGTTCATCCCGCAGGCTCCCT
1121 TCGCATTAAACCAAATATTTATACCTTTACAGTACATGTCTGTTAATAAACGTACAGTCTTTTTCCATCTTGGAATGGTA
1201 TGTTATAATGCTTGTGGCATACGAAAAATGTAAAGACTTGTTACTCCATAGTTGATTGGTTTTCCCAGTCTTTTGCATAT
1281 ACGGAAAGAACACAGGTACAAGCCAGTCTTTGACACACAATCCTAGTGTGAACTTAGACAGTAGATTCTATCTGTGGAGC
1361 ACCAGCAGGCCAGTACTCCTCTGTGAAAGAGGAAAACTTGGTAGATTGGGAGTAAATGACCATGCGTCTTTGGGGCGCTT
1441 TGGATGCCTTTATGGTGAGGCCATTGTGGCTGCCACCTCTTACTTTGTCAGACACTGTCTACTGTTATCATTAGCTGCAG
1521 ACTTGAGGGGCTATTGCTCTCTCCCACACTCCTCACAGCTCTTCTGGAGGAAGGGACTGGTCTCCTGGATCTTACATTTA
1601 GCTATGAAAGGATCTTCTCCAGTAGTTCCTAAGAGGAACTTTGAGTTTGGTGGTTTTAAATCACCTTAGCCACCTGACAT
1681 CCTACATATGTACTTAGCTGAATCACCTCAGTTGCATTTGACCCCGCATAGATCTGCCAATGGTGCCGTTCTACCAACAT
1761 CCTAGAAAACACAGAGTCAGCAGACTCTTAGTACTCTGGAGGGGTCTTAGAGGGCATCCTGAGGGATGACGGGAGGGAGG
1841 GCTGCAATAGCTGGTTTCCATAGCAGCCTCCTCTTACTGAGTTCCACTCCTGGAGTACCACCAAACTTACACAATAGAAG
1921 AGTGTCTGGGATAGTGGAAGATAACCCCTTTGGAAATACATTATATTTCAACTGTGTCTTAAGTACATGGATGTCAGGAT
2001 ATGTGGCTGACATTGGAGACAATGTTTCTTATACCAACCTTTACAGGGTATGATTTTTAAACAATGTTCAAGTGGTATAC
2081 AAGGCTATGTATTGTAACAATTACGGGGGTTTATGTATTTTCCAAAGATTGTAGTTTCTATATCTTGCAAAGGGAAATAT
2161 TTTTTTCCTAATGTGTTTTTATTTTGTAAGTAATAAAATCATAAAAGAAAGATGTTGGGTTTTACAACT
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' aguauGUCGAUCUAUUGGUUUCu 5'
               || :|||:  :|||||| 
Target 5' catccCACTTAGGATGCCAAAGc 3'
580 - 602 142.00 -11.60
2
miRNA  3' aguaUGUCGAUCU-AU--UGGUUUcu 5'
              ||  ||:|| ||  ||||||  
Target 5' ttccACTCCTGGAGTACCACCAAAct 3'
1882 - 1907 137.00 -8.80
3
miRNA  3' aguaugUCGA---UCUAUUGGUUUCu 5'
                ||:|   :|| |:||||:| 
Target 5' aaagtgAGTTCCAGGACAGCCAAGGc 3'
263 - 288 125.00 -10.20
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions C2C12
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1385343. RNA binding protein: 聽AGO2. Condition:C2C12_DM_Ago2_CLIP-Seq_myotubes ...

- Zhang X; Zuo X; Yang B; Li Z; Xue Y; Zhou et al., 2014, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' aguaugucgaucuauuGGUUUCu 5'
                          |||||| 
Target 5' --gguuuauguauuuuCCAAAGa 3'
1 - 21
Article - Zhang X; Zuo X; Yang B; Li Z; Xue Y; Zhou et al.
- Cell, 2014
MicroRNAs are well known to mediate translational repression and mRNA degradation in the cytoplasm. Various microRNAs have also been detected in membrane-compartmentalized organelles, but the functional significance has remained elusive. Here, we report that miR-1, a microRNA specifically induced during myogenesis, efficiently enters the mitochondria where it unexpectedly stimulates, rather than represses, the translation of specific mitochondrial genome-encoded transcripts. We show that this positive effect requires specific miR:mRNA base-pairing and Ago2, but not its functional partner GW182, which is excluded from the mitochondria. We provide evidence for the direct action of Ago2 in mitochondrial translation by crosslinking immunoprecipitation coupled with deep sequencing (CLIP-seq), functional rescue with mitochondria-targeted Ago2, and selective inhibition of the microRNA machinery in the cytoplasm. These findings unveil a positive function of microRNA in mitochondrial translation and suggest a highly coordinated myogenic program via miR-1-mediated translational stimulation in the mitochondria and repression in the cytoplasm.
LinkOut: [PMID: 25083871]
526 mmu-miR-9-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT000453 Stmn1 stathmin 1 4 1
MIRT001913 Foxg1 forkhead box G1 2 1
MIRT003796 Runx1 runt related transcription factor 1 3 1
MIRT005601 Sirt1 sirtuin 1 4 1
MIRT005793 Hes1 hairy and enhancer of split 1 (Drosophila) 3 2
MIRT006708 Zfp521 zinc finger protein 521 3 1
MIRT015114 Fmnl2 formin-like 2 1 1
MIRT015115 Pdhx pyruvate dehydrogenase complex, component X 1 1
MIRT015116 Srcin1 SRC kinase signaling inhibitor 1 1 1
MIRT015117 Sufu suppressor of fused homolog (Drosophila) 1 1
MIRT015118 Lsamp limbic system-associated membrane protein 1 1
MIRT015119 Bptf bromodomain PHD finger transcription factor 1 1
MIRT015120 Tor1aip2 torsin A interacting protein 2 1 1
MIRT015121 Tspan7 tetraspanin 7 1 1
MIRT015122 Ror1 receptor tyrosine kinase-like orphan receptor 1 1 1
MIRT015123 Atp1b1 ATPase, Na+/K+ transporting, beta 1 polypeptide 1 1
MIRT015124 Clock circadian locomotor output cycles kaput 1 1
MIRT015125 Zbtb34 zinc finger and BTB domain containing 34 1 1
MIRT015126 Cdan1 congenital dyserythropoietic anemia, type I (human) 1 1
MIRT015127 Asb7 ankyrin repeat and SOCS box-containing 7 1 1
MIRT015128 Nmt2 N-myristoyltransferase 2 1 1
MIRT015129 Ccdc50 coiled-coil domain containing 50 1 1
MIRT015130 Gzf1 GDNF-inducible zinc finger protein 1 1 1
MIRT015131 Fads2 fatty acid desaturase 2 1 1
MIRT015132 Arf2 ADP-ribosylation factor 2 1 1
MIRT015133 Elovl2 elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2 1 1
MIRT015134 Ctgf connective tissue growth factor 1 1
MIRT015135 Myo5a myosin VA 1 1
MIRT015136 Plat plasminogen activator, tissue 1 1
MIRT015137 Akap9 A kinase (PRKA) anchor protein (yotiao) 9 1 1
MIRT015138 Akt3 thymoma viral proto-oncogene 3 1 1
MIRT015139 Prom1 prominin 1 1 1
MIRT015140 Prrc2b proline-rich coiled-coil 2B 1 1
MIRT015141 Rela v-rel reticuloendotheliosis viral oncogene homolog A (avian) 1 1
MIRT015142 Scn8a sodium channel, voltage-gated, type VIII, alpha 1 1
MIRT015143 Fam63b MINDY lysine 48 deubiquitinase 2 1 1
MIRT015144 Gtf3c4 general transcription factor IIIC, polypeptide 4 1 1
MIRT015145 Chst11 carbohydrate sulfotransferase 11 1 1
MIRT015146 Cplx2 complexin 2 1 1
MIRT015147 B4galt5 UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5 1 1
MIRT015148 Rnf4 ring finger protein 4 1 1
MIRT015149 Myo6 myosin VI 1 1
MIRT015150 Sidt2 SID1 transmembrane family, member 2 1 1
MIRT015151 Fam115a TRPM8 channel-associated factor 1 1 1
MIRT015152 Rpgrip1l Rpgrip1-like 1 1
MIRT015153 Nkrf NF-kappaB repressing factor 1 1
MIRT015154 Clstn1 calsyntenin 1 1 1
MIRT015155 Paqr8 progestin and adipoQ receptor family member VIII 1 1
MIRT015156 Hdgfrp3 HDGF like 3 1 1
MIRT015157 D3Bwg0562e phospholipid phosphatase related 4 1 1
MIRT015158 Gjc3 gap junction protein, gamma 3 1 1
MIRT015159 Larp4 La ribonucleoprotein domain family, member 4 1 1
MIRT015160 March8 membrane-associated ring finger (C3HC4) 8 1 1
MIRT015161 Spire1 spire homolog 1 (Drosophila) 1 1
MIRT015162 Cnrip1 cannabinoid receptor interacting protein 1 1 1
MIRT015163 Slc30a10 solute carrier family 30, member 10 1 1
MIRT015164 Tspan31 tetraspanin 31 1 1