miRTarBase - #MIRT580446


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pre-miRNA Information
pre-miRNA mmu-mir-1906-1   
Genomic Coordinates chr12: 109544541 - 109544620
Description Mus musculus miR-1906-1 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA mmu-mir-1906-2   
Genomic Coordinates chrX: 88759474 - 88759553
Synonyms mmu-mir-1906, Mir1906
Description Mus musculus miR-1906-2 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA mmu-miR-1906
Sequence 48| UGCAGCAGCCUGAGGCAGGGCU |69
Evidence Experimental
Experiments Microarray
Putative Targets

Gene Information
Gene Symbol Tln2   
Synonyms 5730421P04Rik, AI507121, AI787438, AL118320, mKIAA0320
Description talin 2
Transcript NM_001081242   
Expression
Putative miRNA Targets on Tln2
3'UTR of Tln2
(miRNA target sites are highlighted)		 
>Tln2|NM_001081242|3'UTR
   1 GACACCCCCCATGCTGGTGAGCCCCAGGAGGTGGTTCCTACTCCCCCAACAAGAACTGGACATACTGGTGTCCCCCAGAG
  81 CCAGGAACTTCCTGGAAACTGCTGGCCCTCCACCGGAGTCTGTCTCTCTCAGTCCTCAGTCCCGTCACTATCAGCTGCAT
 161 GATCATGGTCTCACACGGTACAGTGTCCCACCCACAGCTCTTCCAGCTCCCCTCACGCCTCGCTATATCTCAGGACAGAG
 241 GGCGCATTTCATGGACTGTTACCAAAAAAGAAAAGTCAGTATTACGTTGTTCTCAGACACCTGTACTCCGTGTCCTCTAA
 321 GACTGCTCCAGGGCCTCTTTGTGAAATCACACTCGGGAAAGAACAATGCTAATAACGGCTCACAGGAATCATCAGTATCA
 401 TGGACATAGAGATTCTCTCTCTGGAGAGAAGACAGCTGGAGTTGGACACTGTTAATAAAGCCAGAAACACTCCCAAGTGA
 481 ACTCTGGAGTCACAGAGGTCTGTGTAAGTGTGGGGCACTGACTCACCCACGGGGGAGAAGATCCCCTACCCGTTTGCACG
 561 CTTTTCTCGCCTCAGTGTGTAAGCTCCTTGTACAACTACACCCATCTTGTATTCTGTGGCCCAGAAAAATGGAAGTTATT
 641 TTTTTTTCCCCCTTCCATAATCCAAAGGGCAGAGTTGTGGAAAGTGGTCAGGGTTAGGTGGGTAGGGGCCGGAATAAAAT
 721 ACTGGGCTCCTCACTCAGCAAAGCTGTTTCAGTTTATGCAGACACACACATGGAGACTATGTCCCTGATGGATCTCAGTG
 801 CAGCGCCCCCTGGAGGAAGAGTCAGGTAGCATTTAGGAAGGAGGTTCCCATGTTCGAGCCCTATTATCAGTTTCTGTGCA
 881 CTTGAGAGGGTCCAAGTTCAAGAAGGAAAGTTATTTGTTTAGAACTTTGACCTTTGATCTCAAGGGGGCATTTCCCACCA
 961 TTTATCTTAATAATCCTAAAATCTAAATGTCCCCTCTGGTCATTGTGAACCTGTGTGACAGCATTGCTTGTTGTCACAGA
1041 AGTGTTTTCACAGTACATCATCTGGGTGCTGCCCTTTCAACCTCCCGATGCCTTCCCCTCGTGCCTTTCCTCTCAGGGCC
1121 CTCTTCTGGAGAGAACATCAGAGATCCCTGACTTTACATTTGAGTTGAGCCCCTGCCTAAGATGAGGGATGAGGGAGGGC
1201 CTGATACCAAGTACCAGCATGTTAATGAACTCGTGAAGAGTTAGCAGGGGCTTGCTTAGACTGTAGCTCAGTTGGTAGAG
1281 TGTTTGCCTGGTTAGCATGCACAAAGCCCTGGGTCCCATCACATAAACTCGATGTGGTGCCACAAGCCTGTAATCCCAGC
1361 ACCAGGGAGATAGAGGCAGGTGGATCAGAAGTTCAAGGTTATCTTTGGCTACATAGTAAGTCAGAGACCAGCCTTGGCTA
1441 CATAGTAAATTATAGAGAAAAGCCTTGGCTACATGAGACCCTGCCTCCAAAAGAGGAGAGAGAAGGAAAAAAGGCATATG
1521 GTCTTCAAGGCTAATGGCTGCTGAGGGCAGACTTTCTCCCCCTTAATGATATGATACCAGTACCACATTGTATGTTGGGC
1601 TCACCACTTCCATCCAGATTTCTACCAAAGAAGAAACACTGGTACTCTGGTCCTCCGAAAGGAAAGAGAGAATCAACCCT
1681 CGACCTTGCCAGATGAGGCTCCTCGAGCAGACTCTCCTGTGCCACAGCTCTAAAACATAATGAAATCCTGACACCTTCCC
1761 AGATGTGTAGAGACTTACACATGCTGCACAAAGGAATCCCTTTCACACAGGTAGAAGGATCTAAGTACGGTGTGAATGAA
1841 AAGCAAATGCAGGGCACACATGGAAGGACTGAGGCTGAGCAGGGCTGCTGGAGAGCCTCCATGCTGGGAGCCCTTGATGC
1921 TCATGGGAAAGCAAACCGCCTCGCTCACCCTTGTTGAGTGTAACTCTTTTTGTTTGTTTTGTTTTTCCCAGACAGGGTTT
2001 CTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCC
2081 TCCCAAGCGCTGGGATTAAAGGTGTGCGCCACTTCACGCCTTTGCTGGGTACTATGCAAAACTATTAAGCCAAACCCCAA
2161 AGTTCATGATCAAGACGGTGATCTCACACAGTAGGACAAGAGGCTCTCCTGCAGCTGGCTCACCCTCTTCCTGTAGGATA
2241 TGCTTCCAGGCAGCTAGCCCCTCACCCCTCCTCCTACCTGTCCCCTGCCACATTGGACATTCCAGGGGCAGGACAGATAC
2321 CAAGTGTCTGTCCCTACCCCAGGGTGGTTTAAAACTTTCACAGAAGTGGACACAGGAGAAGACCTCTAACAAATGAAGGC
2401 AAGGGGCCATGAGGGGAGTTTCAGGACAGTGGGACAGTGTCCTCCTGTCTGGGGTGATGTGCACTAGGAACTTGGGAAGA
2481 GGTCGTTCTCAGGTCTCTCCTCCATGGTCGTGGGCCTACTTCGCACCTGTCCCTTGCTAGCCCATGCTGTGTCCATGTAT
2561 GTGAATGTCCTCGTGGCTGGCTGATCTCTCCTCATTTCATAAACCAGCGGAAATGCTGGGCTACAGGCATTACTTAATGC
2641 TGCTGCTTGTGTCCCCAGAGGCACTGAGGGGTCTTCTGGCTCCTAAGGGAGAAAGAATGCAGATGTAGTGAATTGCAGTT
2721 TGGAGTAGTTTCAAGGCCCATGGCCCAAGGCCTGGAACATGGAATTCATCTGTGAGGGGGACTGGGAATGCAGCAGAGTG
2801 CACTCCTACCTCTGGTCCCGTGAGGGAGGCCAACATTGGGTGTTGAATCCTTACACTGATCTTCCTGTCCTGTGTTTCCC
2881 TGTTTGATGGTTAAAAGTAGGATGTGCCTGATGGCTGGGAAATTGCATTTGGTTTACTTCTGCCTTTCAGAGGTCTTTTG
2961 GTTTTCAGGATGCAAAAGCCATGTTTGGTCAGACAGCCCTGGGTAGCCCTTCCACTGGCCAGTTTGGGAGGTGGTCTTGA
3041 AGGTCATCATAAGCTGATACTTAGGACCTAGGCAGTCCTCCAGTTGGCGTTGGTGATTTCCAGAGGCAGCTGCCCTGGCT
3121 TCAGTTTGTGCACGGGCTTTCAGGGCTAAGCCACCACAGATCTGCTGGCGCACACTCTTCGTCCAGAAAACCCTCTAAGC
3201 CTCTTAGCACACACATCTGCTTGTTGTCTGAGTTCTCTTCCGGCTGGTGAGAGTAGGGACAGCTGAAACCAAGTGTTAAA
3281 AACCGTGTAACGAGGTGTGACGGCGAACATTTAGAATCCCAGCACTGGGGAGGTGGAGGCAGGAGAATTGCCAAGTCTAA
3361 GGTCAGCCTGGGCTGGGTAACAAGATCCTGTCTCAGAAAACCAACAGCTAATGGAAGTAACTTAGTGTTAAAATGTTTGC
3441 CTCGTAAGTGCTAGGCCCTGGGTTGGTTCCCAGCAACACACAGACTTTAACCAAAATGTCCCACCACCTAAAAGCATGTA
3521 TTTATCCCCACCTCCTAAGCGGCCCCAGAACCAGAACCTGATGAAGGAATTAGGGTGGAGGTGGTAAGAGGTGCCACTGC
3601 ACTTCCTCTTGTCTCTCTGGCAGGTGGTCCCCCAAATCTCCCCGAGCTTTGCAGTCCAGGGCTAAGGTAGAGCCTCTGGG
3681 AGCTAAAGCTTAAGATCTCAGCACTGATTGTATGCTCTGCTCAGACACCTAGAAGAAACGAACTCGGTGACCGCGCACAC
3761 AGACAGACACATCTGAGTTACTGAGCAAGTTGCAAGGAACTGGAAGAAAATAGTTGCTTACAGGCTGAGAGGCAACAGTG
3841 CTCAGAGTCCTAAAAGCCAAAGAAAGGTCTTAGGGGCTATGCTGGTGGCCCAGATCTCACCTCACCCCAGAGTCCCTCCC
3921 ACTGAGTCGGCAGCCTCCGCTAGGAAAGACATCCTCCACAAATCGCCTGACGTCACTGCTCCATCAGGGTGAGCTTGCAC
4001 TTGATGTATTAAGTTGTGGTCATTTGGAATGAGCACGAGGAGGGAACTTCCAGTAGTCTCACAATACTATGAAGAAGGGC
4081 TGACACTTTTCTGTGAAACAGGCTAGGTTTTATCTGGTCTCCCTGGAACCCAGCTCACTGCCCACCAGGAGGCAATAGCA
4161 TGCGAGCCCCTCTGCAGCCACATCTGTCAGGAGACAAGAAAGGGAAGCTCTGCCCTTGTCATAATGTTTAATCACATAAA
4241 TTAATTTATCTAATCACATAAATTATTTTTTTTATTCATCAGAAATAAACTTTTAAAGGAATGAAAAAAAAAAAAAAAAA
4321 A
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ucGGGACGGAGUCCGACGACGu 5'
            | :| |:| | |||||||| 
Target 5' ggCATTACTTAATGCTGCTGCt 3'
 2626 - 2647 160.00 -16.30
2 
miRNA  3' ucgggaCGGAGU-CCGACGACgu 5'
                | || | ||||||||  
Target 5' cttcaaGGCTAATGGCTGCTGag 3'
 1523 - 1545 136.00 -18.00
3 
miRNA  3' ucggGACGGAGUCCGACGACgu 5'
              |||    :||||||||  
Target 5' gaggCTGAGCAGGGCTGCTGga 3'
 1871 - 1892 134.00 -20.10
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions C2C12
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1385343. RNA binding protein: 聽AGO2. Condition:C2C12_DM_Ago2_CLIP-Seq_myotubes ...

- Zhang X; Zuo X; Yang B; Li Z; Xue Y; Zhou et al., 2014, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ucgggacggaguccgACGACGu 5'
                         |||||| 
Target 5' guagagacuuacacaUGCUGC- 3'
 		3 - 23
Article - Zhang X; Zuo X; Yang B; Li Z; Xue Y; Zhou et al.
- Cell, 2014
MicroRNAs are well known to mediate translational repression and mRNA degradation in the cytoplasm. Various microRNAs have also been detected in membrane-compartmentalized organelles, but the functional significance has remained elusive. Here, we report that miR-1, a microRNA specifically induced during myogenesis, efficiently enters the mitochondria where it unexpectedly stimulates, rather than represses, the translation of specific mitochondrial genome-encoded transcripts. We show that this positive effect requires specific miR:mRNA base-pairing and Ago2, but not its functional partner GW182, which is excluded from the mitochondria. We provide evidence for the direct action of Ago2 in mitochondrial translation by crosslinking immunoprecipitation coupled with deep sequencing (CLIP-seq), functional rescue with mitochondria-targeted Ago2, and selective inhibition of the microRNA machinery in the cytoplasm. These findings unveil a positive function of microRNA in mitochondrial translation and suggest a highly coordinated myogenic program via miR-1-mediated translational stimulation in the mitochondria and repression in the cytoplasm.
LinkOut: [PMID: 25083871]
CLIP-seq Support 1 for dataset GSM1385343
Method / RBP HITS-CLIP /  AGO2
Cell line / Condition C2C12 / C2C12_DM_Ago2_CLIP-Seq_myotubes
Location of target site NM_001081242 | 3UTR | GUGUAGAGACUUACACAUGCUGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 25083871 / GSE57596
CLIP-seq Viewer Link
27 mmu-miR-1906 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT578439 Irgq immunity-related GTPase family, Q 2 10
MIRT578971 Dhdh dihydrodiol dehydrogenase (dimeric) 2 4
MIRT580446 Tln2 talin 2 2 2
MIRT582494 Mbtps2 membrane-bound transcription factor peptidase, site 2 2 2
MIRT587588 Cox15 cytochrome c oxidase assembly protein 15 2 2
MIRT589524 Mtf1 metal response element binding transcription factor 1 2 2
MIRT591281 Klc1 kinesin light chain 1 2 4
MIRT591935 Ddx19b DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b 2 2
MIRT592084 Sorcs2 sortilin-related VPS10 domain containing receptor 2 2 2
MIRT592206 Mapkap1 mitogen-activated protein kinase associated protein 1 2 4
MIRT592349 Armcx6 armadillo repeat containing, X-linked 6 2 4
MIRT592351 Angel1 angel homolog 1 2 2
MIRT592365 4930444A02Rik protein-O-mannose kinase 2 2
MIRT592427 Spsb4 splA/ryanodine receptor domain and SOCS box containing 4 2 2
MIRT592671 Itgav integrin alpha V 2 2
MIRT592712 Fbxo21 F-box protein 21 2 4
MIRT593155 Itsn1 intersectin 1 (SH3 domain protein 1A) 2 2
MIRT593662 Spen SPEN homolog, transcriptional regulator (Drosophila) 2 2
MIRT593976 Cdc14b CDC14 cell division cycle 14B 2 2
MIRT597931 Pacsin2 protein kinase C and casein kinase substrate in neurons 2 2 2
MIRT597949 Opa1 OPA1, mitochondrial dynamin like GTPase 2 2
MIRT598550 Isoc1 isochorismatase domain containing 1 2 2
MIRT599017 Fgd4 FYVE, RhoGEF and PH domain containing 4 2 2
MIRT600307 Tacc1 transforming, acidic coiled-coil containing protein 1 2 2
MIRT603647 Otop1 otopetrin 1 2 2
MIRT605000 Fam168b family with sequence similarity 168, member B 2 2
MIRT606275 Oxsm 3-oxoacyl-ACP synthase, mitochondrial 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-1 Anthocyanin NULL 145858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Caffeic acid NULL 689043 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Catechin approved 9064 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Curcumin NULL 969516 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Ferulic acid NULL 445858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Hesperidin NULL 10621 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Quercetin NULL 5280343 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Galactose NULL 6036 Quantitative real-time PCR lens 22736950 2012 up-regulated
miR-1 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Quantitative real-time PCR myocardial differentiation of mouse ES cells 19521018 2009 down-regulated
miR-1 Sulfonyl-hydrazone-1 (SHZ) NULL NULL Quantitative real-time PCR Murine broblast-derived Induced pluripotent stem cells 21445862 2011 up-regulated
miR-1 Cocaine NULL 446220 Next-generation sequencing ventral striatum 21708909 2011 up-regulated
miR-1 Atorvastatin approved 60823 Quantitative real-time PCR Cardiomyocyte 23860036 2013 down-regualted
miR-1 Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-1 Docosahexaenoic acid NULL 445580 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 Palmitic acid approved 985 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 17beta-estradiol (E2) approved 5757 Microarray MCF-7AKT breast cancer cells 19528081 2009 down-regulated
miR-1 Essential amino acids (EAA) NULL NULL Quantitative real-time PCR skeletal muscle of young adults 19828686 2009 up-regulated
miR-1 Hydrogen peroxide (H2O2) NULL 784 Quantitative real-time PCR Human umbilical vein endothelial cells 21527937 2011 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Microarray apoptosis-resistant breast cancer cells 21971930 2011 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR acute promyelocytic leukemia 22072212 2012 up-regulated
miR-1 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miR-1 Bicalutamide approved 2375 Microarray prostate 22674191 2012 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR cardia 22889704 2012 up-regulated
miR-1 Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 up-regulated
miR-1 Quinidine approved 441074 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 up-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 down-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR post-infarction rat cardiomyocytes 21220930 2011 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 down-regulated
miR-1 Dexamethasone approved 5743 Microarray adrenals and granulosa cells 24205079 2014 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 up-regulated

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