miRTarBase - #MIRT580981


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pre-miRNA Information
pre-miRNA mmu-mir-664   
Genomic Coordinates chr1: 185242975 - 185243043
Synonyms mmu-mir-664, Mir664
Description Mus musculus miR-664 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA mmu-miR-664-3p
Sequence 38| UAUUCAUUUACUCCCCAGCCUA |59
Evidence Experimental
Experiments Illumina
Putative Targets

Gene Information
Gene Symbol Slc12a2   
Synonyms 9330166H04Rik, Nkcc1, mBSC2, sy-ns
Description solute carrier family 12, member 2
Transcript NM_009194   
Expression
Putative miRNA Targets on Slc12a2
3'UTR of Slc12a2
(miRNA target sites are highlighted)		 
>Slc12a2|NM_009194|3'UTR
   1 CTGTTCTGCACCATGGACTTCCTCTAAGGATGGCACTTCAGTGCCCAGTCAAAGTGACTGTATCGTCAGGAACACCACAG
  81 CATCGCAGTGGCAGACGGGGACTGCTTCACTACTTCATTATTGGAAAGCACATGGAAAGTTGCCCCATTGATAGATAGAT
 161 GGAGACTTCAGTTGTAGTCTACTCCAGATCTCAATCTTAATGACTGCTAATTCTTTCTTGTTGGACTGAAGTTCATGAGA
 241 GTAAAATTTTCCTTTGCTACTTGAAAGCAATAAGAGTGAGTTATTTTTTGATTGCTGAAAGGAGTGCAAAGCCTTTAGCC
 321 TTGAGGTGCCTTCTGAAATAACCAAATTTCATCCAGAGACCTGTCGTCTTTTGTAAATTTCTAGAATGTTAAACTCTGCC
 401 TTCAGATGTTATTCTTGTTTTTAATCTCTGTTATCCTAAGTGGACACTGCTTTTCTCCTCCCACCGACCAGTTAGTGTTG
 481 AGAACTGTGTGTTTTGTATTACTTTTGTAAAAGTATCTGTTAGATACTGAAGAGGATTAGGACAAGCTAATAAAATATGT
 561 GGGGAAAGTATCCAAAAAATGGAGCCCAAGGTTAGGTTTATATGAATATATATATATACATATATAGAGGGAGAGCTAGG
 641 AAAAAGAGGCCCAGACCAACTTTCGGTTAGAATTATGAATTATTTCTTTTAAATCATAGAGATGACTGATGATCTACCCA
 721 GTAATTCTTGTATAATGCTTTTAAAAAAGAATCATGTTTTTTTTTTAAACAAAACCGTGAGATCATTTGTATTATTTTTA
 801 AAAGATCTCTTGATTTAGAATTTTCTCTCAAATGTGAGGGACTTTTATGACATGCTAACATATTTTTTTTAGAGGAAATT
 881 TAGACAAAGCAGTGCCATTTAATAGAACATTTCAATAAACACTATGGGGATTTCACTGTCCTATGCCATCCTTTATTTAA
 961 AAAAAAAAGATTAAAATTTTACCAATGGTTAAAAGGAGCACTGTTTCCTTAGTGAAATGGTTTTAGGCTTCATTTATTCA
1041 AGTATCAAGTACAGTTAGTTTTAATACACTCAGGATTGAACAGATTGTTCTGAACATTGAAACTTAATCCATTCTTAATA
1121 CTTTAAAACTTGTGTTAAAGAAAACTGCCAGTTTGTGCGTTTGACCTTGTCTGCTAATGCACTCGACAGCGTGCATGTGC
1201 ACATGTGCTGCCTGAAAGCTTTATATGCAGACAGACAGCGCGCATGTGCACACGTGCTATCCTGAAAGCTTTATATACAG
1281 TTGTCAGTGTGATGTTTCTCAGCTTCAAGGAAGGATTTTCTAAAAACATTTCAAGGGATTCATATCTACATGTCTGTATG
1361 TGTGTATGTTATACATACACAGGTGCATATGTGTATATGTAATGAAATTTATGTTGCCAGTGTTTCAGATTTTAAAGTGA
1441 TCACGATTTGGTAGATTACAGATATTTTTTTGTTGTTGTTTTAGTTTTTTCTTTTTCTTTTTTTAAGTAAACAGTCAAGT
1521 CAGGTCAAGCAAGACGTTAAAGATTTCACGGAGGACAGAGACAATTTGAAGACCATAGTGTGACTTCATACAGTTATCCA
1601 GTTAGGTAAAGGGCTAACAAGTGGATGATCTCTAAGTTTCGGTGGAGAACGGTCCCAGATTTTTGTCATCTTAAGGGAAA
1681 TGTCAGAAAAGCGTTCTCAGTTGTGGGGTACTTGTGCTGCGCGGATGCAGACTGGGTCAGTACCAGCCGGATATCTACTC
1761 ATTTCCATTCAGAATATTAAGAAAACAGGTTAAATGATTTTTAAAAAAAGTTTTATTTACATTATAATACAATATTTTCC
1841 ATTTGTTGTAAATTTTGCAGAGTTTAGGGCAGTATAAAAGAGTCCCACCAGGAAACCATACCATGCGTGAATTTGCTGAA
1921 TGGAAGCTAGGGCGTGGGCCGAGCGCTGCTATCTTGAAATGTGCACAGGTAGACTTGCCTGCCTTTTACTTTTAAAGCTT
2001 CCCCCCCCCCCCATTCAGGAAACTTCACTGTGACCTGTATGACAGAAACTAATATCATACATGTTACACGTGTGTTTAAA
2081 GGACACACAGTGAATCTCGATGCACCTAACAGGGAGGGAGGGTGATACTGTTTGTGATGTGATGTTAGCAGCAGGTTTCC
2161 ACCTTTAAAAACTACCATTACGGTGGCTAACACTGGCTGCCTGGTCAAACAGTCTCAAGGTTGCAGTCGTACTCTATAAA
2241 GTGAAAATTCTCAACCATTAGTTCTTAGAGATGCTAGCTAGCATTAAAGCTATTTTTATTTTATGCCGACTTTTGATTAT
2321 TTTGATGCCAAATTATTTTTTAGTCCTAATCGTTGATAATAACTTAAAAATAATTATGCAGTGGCCTTTGAGCTCATTAT
2401 TATGATAGGTAAAACATCCGGTGGGTTCAAAGGGGACATTGGTGTTGATTATTAACAGGTAACTAAATCAGATATTTATT
2481 TGTTGCGTCTTTCTCTTTGTGCTTTTAAGTTTTCCTCTCTACTTTTTTTCATATTGCTTTCTGACGTGTGTATGTGTGTG
2561 TGTGTGTATTTTTTTTAAGACTATGGAAATAATTTAAAGAGTTGAGCTCTGGTGATTATCTGCTAAGTTTGAAATGTAAT
2641 ATTTTGATAATACTGTACTGTTCCTGTGACAGACGCCTTTGTAATGTTTTAACCCTGAGCATTGCGGTTGCTGCTTTGTA
2721 CAGAAGTTACTGCAATAAAGGAAGTGGAGTCATCACAAGTTTAATACTTA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' auCCGACCCCUCAUUUACUUAu 5'
            ||:|  ||  || |||||| 
Target 5' aaGGTT-AGGTTTATATGAATa 3'
 588 - 608 127.00 -11.90
2 
miRNA  3' auccgaccccucauUUACUUAu 5'
                        |:||||| 
Target 5' tttaaaggacacacAGTGAATc 3'
 2075 - 2096 124.00 -6.12
3 
miRNA  3' auccGACCCCUCA---UUUAC-UUAu 5'
              |||   |||   ||||| ||| 
Target 5' ttatCTGCTAAGTTTGAAATGTAATa 3'
 2616 - 2641 122.00 -5.40
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions C2C12
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1385343. RNA binding protein: 聽AGO2. Condition:C2C12_DM_Ago2_CLIP-Seq_myotubes ...

- Zhang X; Zuo X; Yang B; Li Z; Xue Y; Zhou et al., 2014, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' auccgaccCCUCAUUUACUUAu 5'
                  ||  || |||||| 
Target 5' --------GGUUUAUAUGAAUa 3'
 		1 - 14
Article - Zhang X; Zuo X; Yang B; Li Z; Xue Y; Zhou et al.
- Cell, 2014
MicroRNAs are well known to mediate translational repression and mRNA degradation in the cytoplasm. Various microRNAs have also been detected in membrane-compartmentalized organelles, but the functional significance has remained elusive. Here, we report that miR-1, a microRNA specifically induced during myogenesis, efficiently enters the mitochondria where it unexpectedly stimulates, rather than represses, the translation of specific mitochondrial genome-encoded transcripts. We show that this positive effect requires specific miR:mRNA base-pairing and Ago2, but not its functional partner GW182, which is excluded from the mitochondria. We provide evidence for the direct action of Ago2 in mitochondrial translation by crosslinking immunoprecipitation coupled with deep sequencing (CLIP-seq), functional rescue with mitochondria-targeted Ago2, and selective inhibition of the microRNA machinery in the cytoplasm. These findings unveil a positive function of microRNA in mitochondrial translation and suggest a highly coordinated myogenic program via miR-1-mediated translational stimulation in the mitochondria and repression in the cytoplasm.
LinkOut: [PMID: 25083871]
34 mmu-miR-664-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT577936 Prl5a1 prolactin family 5, subfamily a, member 1 1 1
MIRT578554 Hopx HOP homeobox 1 1
MIRT579006 Cyp19a1 cytochrome P450, family 19, subfamily a, polypeptide 1 1 1
MIRT579669 1200011I18Rik GPALPP motifs containing 1 1 1
MIRT580267 Trim12c tripartite motif-containing 12C 1 1
MIRT580632 Sycp2 synaptonemal complex protein 2 1 1
MIRT580981 Slc12a2 solute carrier family 12, member 2 1 1
MIRT581678 Ppp1r3d protein phosphatase 1, regulatory subunit 3D 1 1
MIRT582092 Ogdh oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) 1 1
MIRT582126 Nr2c1 nuclear receptor subfamily 2, group C, member 1 1 1
MIRT583126 Heca hdc homolog, cell cycle regulator 1 1
MIRT583594 Fam78b family with sequence similarity 78, member B 1 1
MIRT583662 Fam160b2 family with sequence similarity 160, member B2 1 5
MIRT584399 Cdc27 cell division cycle 27 1 1
MIRT584815 Arid4b AT rich interactive domain 4B (RBP1-like) 1 1
MIRT585915 Slc16a9 solute carrier family 16 (monocarboxylic acid transporters), member 9 1 1
MIRT586057 Rnmt RNA (guanine-7-) methyltransferase 1 1
MIRT586080 Rgs4 regulator of G-protein signaling 4 1 1
MIRT587942 Atl2 atlastin GTPase 2 1 2
MIRT590595 Atp2a2 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 1 1
MIRT590735 Ado 2-aminoethanethiol (cysteamine) dioxygenase 1 1
MIRT591492 Aqp3 aquaporin 3 1 2
MIRT594084 Scoc short coiled-coil protein 1 1
MIRT594733 Zfp62 zinc finger protein 62 1 1
MIRT595057 Aldh1l2 aldehyde dehydrogenase 1 family, member L2 1 1
MIRT595113 Rgs17 regulator of G-protein signaling 17 1 1
MIRT595239 Rhbdl1 rhomboid, veinlet-like 1 (Drosophila) 1 1
MIRT595762 Otud6b OTU domain containing 6B 1 1
MIRT595778 Mc1r melanocortin 1 receptor 1 1
MIRT596728 Wdr59 WD repeat domain 59 1 1
MIRT598239 Mlph melanophilin 1 1
MIRT600005 4930563E22Rik RIKEN cDNA 4930563E22 gene 1 1
MIRT602439 Emx2 empty spiracles homeobox 2 1 1
MIRT736865 Smad4 SMAD family member 4 4 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-664 Acarbose Approved 444254 Microarray diabetic rats cells 24260283 2014 up-regulated
miR-664 Sorafenib approved 216239 Quantitative real-time PCR hepatocellular carcinoma 21530512 2011 up-regulated
miR-664 Ginsenoside Rh2 NULL 119307 Microarray NSCLC cell line A549 23152132 2013 up-regulated

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