miRTarBase - #MIRT585242


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pre-miRNA Information
pre-miRNA mmu-mir-384   
Genomic Coordinates chrX: 105344282 - 105344369
Synonyms Mirn384, mmu-mir-384, Mir384
Description Mus musculus miR-384 stem-loop
Comment The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies .
RNA Secondary Structure

Mature miRNA Information
Mature miRNA mmu-miR-384-5p
Sequence 16| UGUAAACAAUUCCUAGGCAAUGU |38
Evidence Experimental
Experiments Cloned
Putative Targets

Biomarker Information
Biomarker ID Name Type Discovered From Mode Level Source Testing Methods
BZV7T3 miR-384-5p Safety Biomarker (SAF) Clinical/Experimental Data Expression Increase Serum Real-time reverse transcription PCR
Gene Information
Gene Symbol Zfp446   
Synonyms A630035I11Rik, A930031C22, AA120513, AV306632
Description zinc finger protein 446
Transcript NM_001168562   
Other Transcripts NM_001168561 , NM_175558   
Expression
Putative miRNA Targets on Zfp446
3'UTR of Zfp446
(miRNA target sites are highlighted)		 
>Zfp446|NM_001168562|3'UTR
   1 GCCCTCACTGGGGCTCCCAGTGCAGTGGCCCAGCATCCGGCTGCATCTCTCTTCTACCAAAAGGTTCCCATCCCCATACT
  81 TTTGTGTAAGCCCCCATGTGTCCAAGCCCCCAAATGAACGTTCTTTCCACCCTAGCAAGCCTGCCGCTGCTACAGCCAGA
 161 GACACATGTTGACTCTGAGCTGAGACCAAAACAGGAGATGCCACACGAAGGACCAGAATCCCTCCGGAGCCATCCCCCAG
 241 AAGTGGGAGCCATTGCAGATCCAAGGCTAGTTCAAGCCACTCCAAGTGAAAGGCAGAGCCCTTGCAAGGACCCTTCAGTC
 321 TTGTCTCCCACACCACTGCTTGAAGCCCCAGCGAGGCCCACACCTCGGAAGCTGTACGTTTGTGAGCAGTGTGGCCTCAG
 401 CTTTGACTGGAAGTCCGTTTTCATCATCCACCTCCGCACACACACGAGAGGGCCAGGCCTGGAGAGACCATCACAGGTGG
 481 CCCGGGAGCCGGCCATGAAGCGCTCCCCTGGCCTTCGGGGATACACATGCGTGGAGTGTGGGCGCAGCTTCAGCTGGAAG
 561 TCACAGCTGGTCATCCACCGCAAGAGCCATGCAGGCCAGCGGCGCCACTTCTGCCGCGACTGTGGCTGTAGCTTTGACTG
 641 GAAGTTTCAGCTGGTCATTCACAGGAAGATCCACCAGCCAGAGGGTCCATGAGTAGCTGGAGAGGCATGTCTCACCTTGG
 721 ATTCCTCCATCCCCTAATGCACCACTTTAGCATCCTCTCTAGCCAAGAGGAGGTTCTAAGGTACCCCAAATAGGTCAGGG
 801 ATTGCAAGAAGATTGCCCTGTCCAACACCAGACTATCCAGTGTAAGGAGAAGAGGCTAGTCCCTTCCTTTGGCCCCTGCT
 881 TTGTGGAGCCAGGCCTGGGTTCGATGACTAACCTATCCAGCTTGTGCAAAAGGTGGACACTCCCTACTTCAGGATGCTCA
 961 GAAATTGCCTCAGGTCCCTCCTTGCAGTGGCTGGGCAAGAAGTCTCTGTGGAAGGTACTGGAAACCACAGTTGCCTTTCT
1041 CCCCTGCTGCATGTGACCCTTAGACAAACATGCTAGATTTGTTTGTTTTGTTTTGTTTTTTGAGACAGGGTTTTTTCTGT
1121 GTAACCCTGGCTATCCTGGAACTTACTCTGAAGACCAGGCTGGCCTTGAACTCAGAAATTCACCTGCCTCTGCCTCCCAA
1201 GTGCTGGAATTAAAGGCATGTGCCACCACTGCCTGGCTAACATGGTAGATTTTTAATGTAAGTTATACGTCTATAACAAT
1281 TTCTAAGTAAAACTCCTGACTTCTAGCTTCCATTGACCAAAAGAGCAGCCGTGTGTGCTGGCTAGCAGACTACAGGAACC
1361 ACAGGGCAGCTGAGCCCTAAAAGGCCTAATTAGTTACTTCTCTCCTCCAGCCTACCTAGTTTCCTGACTACACACATTGC
1441 TCCCCACCCGCCCTGGCCTTTGAACTCCTGAACTTGAACTTGGATGAACAACTGACTCTCCTTTGGGTGCATGAGAGCAC
1521 ATGAGTGGATTCTGAGAAGTTAGATAACCCATGGGTACCTCAGGCCATGCATGCTTCTGGGTGAAGGCTACACCGCACAA
1601 TGGCCAGTTAAACTGGAAGACAAAGGGTCATTCCTTGATGCCCAGGGAACTGTGACCCTCTTAACAATCACTCAGAATTT
1681 TTCAGTGCATGGTGGCCTACTAACTCTGCCTGTAAACTAGGTAGAGCAAAACAGATTTACTTACTAATTGTTCCAGTGTC
1761 AAAGCACTGAAGCATGTCTCATTAGATCAAAGACAGACTTACCCTGGGAGCTACCCGAGACCCTTGGCTTAGGACCTCTT
1841 TTTCCATCTGCTTAAAGAGCCTTTGAATGGCATGGGTCCCCTTAGATATTCCAGGGTGATCACCTGAAGCTCAGGTGATG
1921 AGATGGGAGCTTTTCTTTTGTTTGAGACAGGGTCTCCTAATGCAGCAGCTGCTGCCTCTAACTGGTGATCCTCCTGTCTC
2001 AGCTTCCTATGTGTTGGAACTATAGGCTTGTACCACCAAGCCCAGGTTGGTATTTTAAACTCTCTGTATATATGTTTAAG
2081 ACAGTCTCACTTTAATGCCCTCAAACTATCTGTAGTCCTTCAACCTCAGCCCCTGAGTGTTGGAATTAAAGTTGTGTGTC
2161 ACTGCGCCAGACTAAGACTTTAAATACTTTTGATTTTAAAATTTCGAACTATGGAGCAGGATTCAGTGCTGTAGGCAGAT
2241 CTCTGTTAGTTTGAGGTCAGATTGCTTTGCATAGTGTGTTCCAGGACAGCCAGGGGCTATTGTGAGACCCTGTCTTAAAA
2321 ATAAGTAAAGAGAAAAAAAATAAGTAAAGAAATAAGCAAATAAATTCTGCAGATGGGCACATCAAAGTGTCGTCTAGAAA
2401 CCTGAGTTTTCAACACTGTCCATTTGTGCTCACTAATCCAGTTTGTTGTTCTAGGGGTGTGTGGGTATGTATGTATGTAT
2481 GTATGTATGTATGTATGTATGTATGTATGTGTGTGTGTGTTTACGTACATGGAAGCCAGAAGAGAGTATCAGGGTCTTCT
2561 ACTTAGTCACCTCTGCTTGTTAATGTCCATCCTGGAATCCAAACTGCAGTGACAGACTTGAACTCTGGCTCCGATGACTT
2641 CACATCAAGCGCTTTTAACTACTGAATCATGTCTCCAGTTCATGACATTATTGAAGCACTTGCTTCAGTCTGAGCCCCTC
2721 CTTGCTGCTCCCATGTGCCTCTTCCTTCATGTCCCTGTTCTACCTGCCCCTGCTCATGAGTAGTTTGAGTTTTCATGTGT
2801 TCCTTAGACTGCTTGCCCATTCATTATATTTGTCCTAGACAACTGAAGAACAGTGTCAGTTCCTACAGCAAGTTCCAGAA
2881 CCTGATCTTCATAGGTTTTGTTTGTTTGTTCTTTTGGAGGGGAGCTGAAATGATCTTTCCATATAACCCAAGCCTGCCCT
2961 CAGCTTCTTTTTATTTAGTGTGCACGTGCACACACACATCTGCATCAGTTTGCATTTACCATATACATGCACAGCACCAA
3041 CAGAGGTCATAAGACTAAAATCCCCTGTACTGGAGCTACAGGTGGTTGTGAGCCACCATATGGCTGCTTGGAGCTGAACC
3121 AAGGTTGACTGCAGGGTCAGCAAGTGGTTTTCAACACTGAGCCATCTCTCCAGCCCCTTCCTTACCTTAAGTTCTTGATC
3201 CTTTTTTAGTTTTGTTTTTTTGAGACAGGGTTTCTCTAACAGTCCTGGCTGTCCTGGAAGTTTATGGACTGCTGGCCTTA
3281 AACTCACAGGTGTTCACCAGACTCTGCCATTTGTGTGCTAAGATTAAAGGTATGCACCAGAAGGAAAACTACACACACAC
3361 ACACATACACACACACACACACACTGTGTGAACAGTGTTCTTTCTGTCTGTAGACCTGCAGGTCAGAAGAGGGCACCAGA
3441 TCTCATTATAGATGGTTATGGGTTACCATATGGTTGCTATGAATTGAACTCTGGACCACTGGAAGAATAGCCAGTGCTCT
3521 TAACCTCTGAGCCATCTCTCCAGCCCAAGACTGTCTTAATTGTCAAACCATCTGTGTTTGTCATAGTTGGTCATGGAGCA
3601 AACCTGTAATCCTAGCAGGCGGGACGATCAGGAGTTCAAGGTCTTTCACAGCTACATAGCAGGTTCCAGCCTGTGTTAAC
3681 ATGAAATCCTGTCTGATAAAACAACCTCAAAATAAAACAAAGTAATAAAATTG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uguaACGGAUCCUUA---ACAAAUGu 5'
              ||: |: | :|   ||||||| 
Target 5' tgtaTGTATGTGTGTGTGTGTTTACg 3'
 2500 - 2525 147.00 -10.00
2 
miRNA  3' ugUA-ACGGAUCCUUAACAAAUGu 5'
            || | | ||||  ||||||:: 
Target 5' tgATCTTCATAGGTTTTGTTTGTt 3'
 2883 - 2906 133.00 -9.90
3 
miRNA  3' uguaACGGAUCCUUAACAAAUGu 5'
              || ||| || ||||||:: 
Target 5' aacaTG-CTA-GATTTGTTTGTt 3'
 1067 - 1087 129.00 -10.00
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions C2C12
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1385342. RNA binding protein: 聽AGO2. Condition:C2C12_GM_Ago2_CLIP-Seq_myoblast ...

- Zhang X; Zuo X; Yang B; Li Z; Xue Y; Zhou et al., 2014, Cell.

Article - Zhang X; Zuo X; Yang B; Li Z; Xue Y; Zhou et al.
- Cell, 2014
MicroRNAs are well known to mediate translational repression and mRNA degradation in the cytoplasm. Various microRNAs have also been detected in membrane-compartmentalized organelles, but the functional significance has remained elusive. Here, we report that miR-1, a microRNA specifically induced during myogenesis, efficiently enters the mitochondria where it unexpectedly stimulates, rather than represses, the translation of specific mitochondrial genome-encoded transcripts. We show that this positive effect requires specific miR:mRNA base-pairing and Ago2, but not its functional partner GW182, which is excluded from the mitochondria. We provide evidence for the direct action of Ago2 in mitochondrial translation by crosslinking immunoprecipitation coupled with deep sequencing (CLIP-seq), functional rescue with mitochondria-targeted Ago2, and selective inhibition of the microRNA machinery in the cytoplasm. These findings unveil a positive function of microRNA in mitochondrial translation and suggest a highly coordinated myogenic program via miR-1-mediated translational stimulation in the mitochondria and repression in the cytoplasm.
LinkOut: [PMID: 25083871]
CLIP-seq Support 1 for dataset GSM1385342
Method / RBP HITS-CLIP /  AGO2
Cell line / Condition C2C12 / C2C12_GM_Ago2_CLIP-Seq_myoblast
Location of target site NM_001168561 | 3UTR | UGGGUAUGUAUGUAUGUAUGUAUGUAUGUAUGUAUGUAUGUAUGUAUGUGUGUGUGUGUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 25083871 / GSE57596
CLIP-seq Viewer Link
37 mmu-miR-384-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT577998 Pgr progesterone receptor 2 2
MIRT578191 Narg2 interactor of little elongation complex ELL subunit 2 2 2
MIRT578276 Mesdc2 mesoderm development LRP chaperone 2 2
MIRT578464 Ints12 integrator complex subunit 12 2 2
MIRT578486 Il18r1 interleukin 18 receptor 1 2 4
MIRT580032 Wdr89 WD repeat domain 89 2 6
MIRT580041 Wdr44 WD repeat domain 44 2 2
MIRT580302 Tomm70a translocase of outer mitochondrial membrane 70 homolog A (yeast) 2 2
MIRT581000 Six4 sine oculis-related homeobox 4 2 2
MIRT581273 Rrad Ras-related associated with diabetes 2 2
MIRT582217 Nfatc3 nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3 2 2
MIRT582447 Mgea5 meningioma expressed antigen 5 (hyaluronidase) 2 2
MIRT583055 Hoxb3 homeobox B3 2 2
MIRT583626 Strip1 striatin interacting protein 1 1 1
MIRT583683 Amer1 APC membrane recruitment 1 1 1
MIRT583923 Dpy19l1 dpy-19-like 1 (C. elegans) 2 2
MIRT584696 Cep170b centrosomal protein 170B 1 3
MIRT585027 Gskip GSK3B interacting protein 1 1
MIRT585242 Zfp446 zinc finger protein 446 2 2
MIRT586100 Reep4 receptor accessory protein 4 2 4
MIRT587716 Cd300a CD300A molecule 2 4
MIRT588342 Zfp711 zinc finger protein 711 2 2
MIRT588629 Tnrc6b trinucleotide repeat containing 6b 2 6
MIRT589300 Pigh phosphatidylinositol glycan anchor biosynthesis, class H 2 2
MIRT590164 Eno2 enolase 2, gamma neuronal 2 2
MIRT592642 Lpar3 lysophosphatidic acid receptor 3 2 4
MIRT593646 Tbc1d5 TBC1 domain family, member 5 2 2
MIRT595037 Camk4 calcium/calmodulin-dependent protein kinase IV 2 2
MIRT595222 Slc16a1 solute carrier family 16 (monocarboxylic acid transporters), member 1 2 2
MIRT595455 Ptrhd1 peptidyl-tRNA hydrolase domain containing 1 1 1
MIRT595822 Fam227a family with sequence similarity 227, member A 1 1
MIRT596023 Cdk13 cyclin-dependent kinase 13 2 2
MIRT596361 Serpine1 serine (or cysteine) peptidase inhibitor, clade E, member 1 2 2
MIRT596421 Ing1 inhibitor of growth family, member 1 2 2
MIRT596514 Zfp9 zinc finger protein 9 2 2
MIRT599311 Csf1 colony stimulating factor 1 (macrophage) 2 2
MIRT603174 Trp53rk transformation related protein 53 regulating kinase B 2 2

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