pre-miRNA Information
pre-miRNA mmu-mir-137   
Genomic Coordinates chr3: 118433857 - 118433929
Synonyms Mirn137, mmu-mir-137, Mir137
Description Mus musculus miR-137 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA mmu-miR-137-3p
Sequence 45| UUAUUGCUUAAGAAUACGCGUAG |67
Evidence Experimental
Experiments Cloned
Putative Targets

Biomarker Information
Biomarker ID Name Type Discovered From Mode Level Source Testing Methods
B41RDC miR-137 Safety Biomarker (SAF) Clinical/Experimental Data Expression Decrease Neuron Reverse transcription-polymerase chain reaction
Gene Information
Gene Symbol Slc16a9   
Synonyms 1200003C15Rik, 4930425B13Rik, AI552636
Description solute carrier family 16 (monocarboxylic acid transporters), member 9
Transcript NM_025807   
Expression
Putative miRNA Targets on Slc16a9
3'UTR of Slc16a9
(miRNA target sites are highlighted)
>Slc16a9|NM_025807|3'UTR
   1 AGGGATATTAAAAGGCCTTATTTTCTCTATTTTTCTACTTTATACCATACAGCAATATGTGTATGTATGTATGTATGTAT
  81 GTATGAATGAATGAATATTCGTATATAACAAATTGTTAGGCAGGTTCTAGAGTCACAATCTTATAGCAAAACTTCTCTGG
 161 CTGACTCTGAAGGACAACGCACGCTCTGTCTTTGTGTGCCTTGTATAACCTTGATTCCTTGTCTTCCCCTCCCCCACCCC
 241 TCGAGAAGTGGGACTGTTCTGTTCTGTTCTGTTTCATGGTTGTTCGTTGTTCATGAGTTCAGAATTAGCCTCGCACAGTT
 321 TTCTCTGGATGAAATTTAAAGTCTCTGCTTTCCCCGTGAGTTCTCTAAGGTGCTCAGTGGGTCCTGTCTTAAACTGTGCG
 401 CTCCTCACAATTGGATTTGCGTGAAGGAGTAATGGCTGTCTCCTCGATGTCAGACCTGCAAATCCAGAGAAGACAATGAG
 481 CCATTTCATTTCCGGAAATGAAAGCGGTTGCAACATCGCTGAGCTGTCGAAGACCTTAGACAAGATAGTTTTAAATCACA
 561 GATGTCTGACGTCCGTTTTGTTTTACTGTGCTCGATGAAGTACTGTGAGGCAGTTTGGTGTCCACTGCCTTCGAACTCAC
 641 TCGATTCCTCCAGCAGTCCGCCTGCATGGCCGGCTCCTAGGACCTTGCTCGCTGGTGTTGATCGGCAACCACTCTGCTGA
 721 TGTCTCCAAATAACCTGTTGGTTTGCCGGTTTCCGCCTTGGAAATAGACCTTTGAACCATTCCGAAATCTGGCCAATGGG
 801 AAGCGCCCATTTGCTTTGAGCACCTCGAGAACGGGTTGCAAGGCCTTGCTTGCATGTCTTCCAAATGAAGTCCGTGGTGG
 881 TTTCTCTTGGGCTTTTCCACTATTGCGTTTCGATTTGTGGACAGTGCTAAAAAAAAAAAAAATGATGCTTTCGGTCCATA
 961 AGATGTGGGAAAGGACAAGGTAAAGAGAACTCGCTACTCTCACCCAACCGTATTTAATCCCAAGAACAATGTTTGAGGGT
1041 GAAAAATAATGTTTAATAAATGGGCTTTTTTTTCCTCTATAGAAATGGGTTTCAAGTTTGGTATGGCTGGAAATGCCCTG
1121 TGGAAACTTAAATGCGTGCTACTATGCTGCTTTCCTTTGCATTATTTTTTGAGACAGGGTTTCTTCTGCGTAGCCTTAGC
1201 TGATCTGAACTTGCAGTATAGACCAGCCTGGCCTTGAACTCAGATCCACCTGCGGCTGCATCCCAAGTACTGGGATTAAG
1281 TAGGAGTACCTTTCCTGGCTAGTACTGTTTTTCTTGAATAAAAGGAAACAAACAAACAAACAAACAAACAAGATAAACCA
1361 TGAAGTCAGGTATTATAAAACAAACAGCCAAGGGTTCTTTAAGTAAGGGCTCCCTTTCTGTTGTGCCAAAATTTTCCTTT
1441 TTTTTTTTTTTTAATATGTGAAATGATTTTGCAGGACTACATTGCCTTCCTTTGGGGACACCTGAAGCACTTTATTACAC
1521 ATCCCGGATAGCACCTCCCAGAGGTACAACTGTGTCCTGTGTCATCAAGTAGAAAGATTCCATCGCATAGTCAGTCCTGT
1601 GGCAATGCAATAATGGGGCTCCAAGCACATGAGACTTGTGTTCTACACTCAGACTTCTGGAAAGTTCTTTGTACCTCATT
1681 CTTCAGTCTATCAAAGTTAGTAACTAAAGCCTAACTCCAGCTCCAGGGGATCCGGCACCCTCTTCTGTCCCCCACAGCCA
1761 CCTGTGTATTGGTGGAATATATATATATATAATATATATATATATATATACCCCCACACATAAATAAAAATAAAAAAAGA
1841 TGTCTTTAAAATTTAGAGCTATGATTTTTTTTAAGCCAAATAAATAAATAAAAATT
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gaugcgcAUA-AGAAU-UCGUUAUu 5'
                 |||  | || ||||||| 
Target 5' tctacttTATACCATACAGCAATAt 3'
34 - 58 148.00 -6.90
2
miRNA  3' gaUGCGCAUAAGAAUUCG--UUAUu 5'
            |:|  | ||:||||||  |||| 
Target 5' ctATGATTTTTTTTAAGCCAAATAa 3'
1859 - 1883 133.00 -12.00
3
miRNA  3' gaugcgcaUAAGAAU-UCGUUAUu 5'
                  | ||||| ||||| | 
Target 5' agagtcacAATCTTATAGCAAAAc 3'
129 - 152 127.00 -5.72
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions C2C12
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1385342. RNA binding protein: 聽AGO2. Condition:C2C12_GM_Ago2_CLIP-Seq_myoblast ...

- Zhang X; Zuo X; Yang B; Li Z; Xue Y; Zhou et al., 2014, Cell.

Article - Zhang X; Zuo X; Yang B; Li Z; Xue Y; Zhou et al.
- Cell, 2014
MicroRNAs are well known to mediate translational repression and mRNA degradation in the cytoplasm. Various microRNAs have also been detected in membrane-compartmentalized organelles, but the functional significance has remained elusive. Here, we report that miR-1, a microRNA specifically induced during myogenesis, efficiently enters the mitochondria where it unexpectedly stimulates, rather than represses, the translation of specific mitochondrial genome-encoded transcripts. We show that this positive effect requires specific miR:mRNA base-pairing and Ago2, but not its functional partner GW182, which is excluded from the mitochondria. We provide evidence for the direct action of Ago2 in mitochondrial translation by crosslinking immunoprecipitation coupled with deep sequencing (CLIP-seq), functional rescue with mitochondria-targeted Ago2, and selective inhibition of the microRNA machinery in the cytoplasm. These findings unveil a positive function of microRNA in mitochondrial translation and suggest a highly coordinated myogenic program via miR-1-mediated translational stimulation in the mitochondria and repression in the cytoplasm.
LinkOut: [PMID: 25083871]
16 mmu-miR-137-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT000452 Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit 4 1
MIRT001015 CDK6 cyclin dependent kinase 6 3 1
MIRT005501 Tbx3 T-box 3 3 1
MIRT006933 Nf1 neurofibromin 1 1 1
MIRT014840 Cdk6 cyclin-dependent kinase 6 1 1
MIRT438758 Nr1i3 nuclear receptor subfamily 1, group I, member 3 2 1
MIRT580289 Trhr thyrotropin releasing hormone receptor 1 1
MIRT581519 Ptprd protein tyrosine phosphatase, receptor type, D 1 1
MIRT585929 Slc16a9 solute carrier family 16 (monocarboxylic acid transporters), member 9 1 1
MIRT586765 Kcnk6 potassium inwardly-rectifying channel, subfamily K, member 6 1 1
MIRT593788 Ncf2 neutrophil cytosolic factor 2 1 1
MIRT594208 Wdr12 WD repeat domain 12 1 1
MIRT595898 Cd69 CD69 antigen 1 1
MIRT596006 Diras2 DIRAS family, GTP-binding RAS-like 2 1 1
MIRT597415 Rpp40 ribonuclease P 40 subunit 1 1
MIRT604053 Esf1 ESF1 nucleolar pre-rRNA processing protein homolog 1 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-137 Curcumin NULL 969516 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-137 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-137 Emodin NULL 3220 Microarray K562 cells 23744534 2013 down-regualted
miR-137 Emodin NULL 3220 Quantitative real-time PCR K562 cells 23744534 2013 down-regualted
miR-137 Olea europaea leaf extract NULL NULL Quantitative real-time PCR Glioblastoma multiforme tumors cell lines 25232498 2014 up-regualted
miR-137 Formaldehyde NULL 712 Microarray Human lung epithelial cells (A549) 21147603 2011 down-regulated
miR-137 Ginsenoside Rh2 NULL 119307 Microarray human glioma cells U251 21372826 2011 up-regulated
miR-137 Interleukin 13 (IL-13) NULL NULL Quantitative real-time PCR esophageal squamous cells 22453679 2012 up-regulated
miR-137 1,2,6-Tri-O-galloyl-beta-D-glucopyranose NULL NULL Microarray HepG2 hepatocarcinoma cells. 22506400 2011 down-regulated
miR-137 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miR-137 Olea europaea leaf extract NULL NULL Quantitative real-time PCR glioblastoma cells. 22722712 2012 up-regulated
miR-137 Temozolomide approved 5394 Quantitative real-time PCR glioblastoma cells. 22722712 2012 up-regulated
miR-137 Nicotine approved 89594 Microarray Rat adrenal pheochromocytoma PC12 cell 18845019 2009 up-regulated
miR-137 Capecitabine approved 60953 Quantitative real-time PCR rectal cancer 18695884 2008 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
mmu-miR-137-3p Doxorubicin 31703 NSC123127 approved sensitive Low Neuroblastoma tissue and cell line (HepG2, LS174T, UKF-NB3)

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