miRTarBase - #MIRT595037


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pre-miRNA Information
pre-miRNA mmu-mir-384   
Genomic Coordinates chrX: 105344282 - 105344369
Synonyms Mirn384, mmu-mir-384, Mir384
Description Mus musculus miR-384 stem-loop
Comment The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies .
RNA Secondary Structure

Mature miRNA Information
Mature miRNA mmu-miR-384-5p
Sequence 16| UGUAAACAAUUCCUAGGCAAUGU |38
Evidence Experimental
Experiments Cloned
Putative Targets

Biomarker Information
Biomarker ID Name Type Discovered From Mode Level Source Testing Methods
BZV7T3 miR-384-5p Safety Biomarker (SAF) Clinical/Experimental Data Expression Increase Serum Real-time reverse transcription PCR
Gene Information
Gene Symbol Camk4   
Synonyms A430110E23Rik, AI666733, CaMKIV, CaMKIV/Gr, D18Bwg0362e
Description calcium/calmodulin-dependent protein kinase IV
Transcript NM_009793   
Expression
Putative miRNA Targets on Camk4
3'UTR of Camk4
(miRNA target sites are highlighted)		 
>Camk4|NM_009793|3'UTR
   1 GCTGGCTTCCTTTAGGTCAGGGCCAACCCCAGCATTTTATGCACTCTGTCCCTCAGCAAGGCGGGGAAGCATGATATGCA
  81 CTATAGTGATTCTGTTTTGAGGTGCAAAAAAAAAACCCATATATACCAGTTGGTAACCCTAATGTCAGTGCATGTGTTTG
 161 CTTTATGAAATAATGACATTTTCTATGGCATGTAATGGATACCTAATACTGATGAGTTAAATTTGAAATTTCTAGCAAAC
 241 AACGCAACACTTAAACATTCTCAGCCTTTGGTGGCACATATTGAAGTGAAATGGCAAACAGACTTTGAAAGCTTAGGCAT
 321 CCTACACCCACTAGAAGTCTTCAAAGAGGGCAATTCCTTTGAACTCAGCTAAAACCAGCTGGAGGTAGAGGACACACTCC
 401 CATGACTTTTCAAATACTTGCAGTGGGAAGGGCCGAGTAGGCCGTTTTAAAAGTAGGCTGAAGATGGTTATAAAAGATAA
 481 CCTGTAGAACGTGCAAAAACATCCATGTACAGTGTTGAGAAGTTGAGTCATTCTTACAAGGCTCTGAGTCCACAGTCCTC
 561 TTAAGTGTATGCAGAGAATGTCTTATTTTTCTTTAGTATACTCTATAAGAATACCCAAAATGTTCAGTATAAAATTCTGC
 641 CAGTTTACAATTCTTGGGAAATTAATTTTTAAACTGTGCCGCTACTTTTCCTCTACCTGCCTTTCAAATAAAATACCCCG
 721 CAGAGTATACAGCCTAGGAAAGAGGAAATTTAACTAAAATGAGATAGAATTAGGCTTTGGATGTACCAAGATTAACTCCT
 801 TTTCATTTCTCACAAAAATTTGCATTTGTGAGCTTATATGATATTTTGCATATCAGAACATTTTTATGGATACACTCTGC
 881 AAGTAGCAAGTTTCAAGTTTTGGAAAAGCCCATTGTACAAGTCGAGGCCAAAATGTCTGAATCTTATAACAATACATTCA
 961 ATGGTTAGATTACTTAGTACTGAGGTTGTTAGAGTAAGGAAATGTTAGCACAGGATATTCCCCTCCACCTATGTATACAT
1041 ACTGTTCATTAAAATTCACTATGAGAGCTAGGAGCTTTTCCAATGGAGGGGTTTACACATTTTATAATGTTGAAATATGT
1121 TGAATATATGCCAAGAAATTTAGCATAGTGTGAACTTTTTTTTTTTTTGCCTTAAAAATAAGCAAAACCAAAAATAAAAT
1201 AAAAACACATCTTGAACTAGACCTCGGAGAGGGCACAGCATTAGATCTTAGTTAGCATGATTTTCTTCTTAGAATAATTG
1281 GGGGGGGGGGTATACGAAATCCAATACCTCAAATTTTGTGTTTGAGTGAAAATGAGCACTTTATCAAAATAGCTGTTTAA
1361 TATTTTGTGTGGATTTTCTTGACTTAAAAAAAAGTATTACTTTTAAAGTCCAAAATGGGGGCAGGAAAAATGAATAGCAC
1441 AGAATTTTTTTTTCATTAAACTAATAATTTGTTCTGACGCGTTCAGTCACACTGGGAACTGACGTTCTATCAGAGGTTTC
1521 TCCAGGCTGTTAGAGTGTCAGCACTTCAGCAGGTCAAGCACAAACCTCTGACAGCTTTTGGGGAAGGAGACAGTGTGGTG
1601 CTTTGAGCATTTTGTGAATGGGTCCTTGACAGGCAGCTGACTAGGAGGGCATCATCTGACGAGGGTGATTCTTTTCCTGT
1681 TGACTTCCATTCACAGTGTTTATGCTCCTCCTCCTGTTTGAATTCTTCCCTCTTGGAAGACCTCATTCTGAGGGTCATAA
1761 AGGGCTCCCTAGTTTTAACTTTTAAGAGTGCTTTGTTACGATTTCCATTTAGGAAGAGCAATTCCCTGGTGTAATTTTCC
1841 TCATCAAACTTACCATATGTATGGTGAGTTTCCCATATTTGGAAAGAGTAGAGAAGACTAGGGGGTCTTGTTAGAAGATG
1921 GCATCTAAATATCAGAACATATCATTGCTCAAACCCAGCCCAGGCCTTTCTTCATCCCAGCATATGCTGAATGCCTCGAA
2001 TGACCCTGTAGGCTATAGGAAGAGCATTATAAATGCCAAGGCCTCTCGGATCTCAGAATCAGTTGCTTAAATGATTGTAT
2081 CTCATCCCTTCTTGGTGGAACTCAAGAGTTCTAGCACAATTCCCTCCCTCTCTTTCATAACCTACACATTTCACTAGCTA
2161 AACATCATGAGTAGGTTTCATTTGTAACTGGTACACTAAAGATTAAGTCCTACTAATACTTACAACCTTTCGCTCAAATC
2241 ATTCAGAGATTCCATCTAAGAATAATTATTTTACCCACTTAAAAGAACAATCAACATTTATATTGCTTGTTAAAATTATA
2321 TTATCTATTTCAAAGATTATGTAAACTGAAGGAAGACAGTCTTAATTTGAAAGAATACGTTCTAATATTACTCTTAATTG
2401 TTAATTGTCTTTGTTAGGGTTTTACTCCTCTGAAGAGACACCATGACCAAAGCAACTCTTGTCATGGAAAACACTTAATT
2481 GGGGGCTGGCTTACAGTTTTAGAGGTTCAATCCATTATCATCATGGCAGGAAGCAGGGCAGCATCCAGGCCAATATAGTG
2561 CTGGAGAAGAGACAGAGTTCTACATCTTAATTCAAAGGTAGCAGCAGGAGACTCTGGATCACACTGACCAGATTTAAGCA
2641 TATATATAAGCGGGACATCAAAGCCCTGCCTCCACACTGACTACCTTCCCCTAACAAGGCCACACCTCCTCCAGTAAGGC
2721 CACACCCCCTAAATAATGCCACTTCCCATGGGACAAGCACATTCAAACCACCACAGTAATACAGTCACAAAGCAAAACAA
2801 AATTTTAAATTTCAGCAAATAGCAAATATGCATTCCAAGGTGGTGGGAGGCAGAGGCAGACGGATCTCTGAGTCCCAAGG
2881 ACAGCCTGCCTGGTCTACAGAGTAAGTTCCAAGACATCCAGGGCTGCAAAGAGAAACCCTGTATCAACAAAAAGCCAAAG
2961 CCAAAGAGCAACAGAAAAGTTACATTCATTATTGGTTTTTATTTCAAGATCAGACATATAGCTTAACGGGGTTCTTTCAC
3041 CACAGAGGACAGTCTGCAAATTTTTTTCTCCTATTTAGAAAGTCCACCTGTGCTTACAGTGGTTTCTCAAACTGTTAGCC
3121 CTCTTGCCACAACAGCACATAAATGAGAGATTAGAATAGAATGGTTACAAAGTTATCTTCTGAAATAAGTGTTTATATTA
3201 AAAAGTATAATAAGGTACACATGTAAAAACAATTCTCAGACAAGGTTTTATTATGAATTGCAGGCTGGCCTTGAATTCAC
3281 TTTGTAATCTAGGCTGACCTCAGACTCACACAGTGATCTTCCTGCCTCATCTTTCCCTGGATCTGGGGTTATAAGCATAT
3361 GCCACCACTCCCATAACCATGCATGTATCTTTAGATTTTCTATTAGCTACATTCTAAAAAGAAAATATGGAATTAATACT
3441 ATATTTTAATCCAGTATACACATATTATTACATCAAAATTAAAATTAATAAGATAATTTGAATCTATTTTATACTGTTTC
3521 TAAATTAACAGTTTAAGCATGTTTACATCGGGCGGTCATGAGCCACATTAAGCCAGTGGTTCCTATGGTAGACATGCTAG
3601 TCTAGCCTAGAGCACTTTTCTTCGGAGCAGAGTAAGACTTGAGTTTCTATGGTCAGATCTGAGCTGACTTAGTTTTCCAC
3681 ATTGGTGAGTTGGTGAGCAGCTAAGATGCAAATGTTATAGGTGTAGATGCATAAATCCTGGCTACCCCTGGACATGCATT
3761 TTCTTAAATAAAAAAAAGTGATCTGTGTTATCACATCAAAGTAACACTTCCTTACACATTGTCAAAGTGTATGTACTGGT
3841 CAGAGTCCAGCTTATCCCCATTTGGCTCTGGAAACCTGACTGTACCCCAGTTTCCTGAGTACTGCCAAAGAGCCAACAGA
3921 ATTCCCACTTAGCAGAAATTATTGTGGGCCCACCGCGTGTCACCACTGAGCAGCCTATATACAGAGTCCATTCTCTAGAC
4001 ACTGAACTCAGCTGGACATCATCCTCATGTATGCAGGCAATCTTTCCAGAAGCCTCCTGGAAAATACAGTTGCATGGTGG
4081 ATATGTTAGTTGAAGGTGGTGATATGGCAGATACCCACAAAATGGAAATGCCATCATGTCTGGCATTTGTGAAGCCTCAT
4161 AGAAGGAACTGGTCAACACTGACACTGACAGATTTTTTAAAAAAGACTTTTGGAAATTTTTACATACTGATTTTAGAATA
4241 ATATCCTAATCGTTTTATTGGCAAATTTATAGAGAAAGAGCAGCTTGCCTTTTAAAGGGACCTTGATTGCATGCCATTTG
4321 ATATTTTGTAATGTAGAATGTTCAGCATTTTTTTAATTGGCTATTTCCAGTATAACACAAGGTTGCTAATTGTGAGCTGC
4401 CTGCAGGTTGAAGCTTGAAAGAGCCATTGTATTTCATGGTTCAGTTTTTATTACACAGAAACAGCTGGTTGCATTTCAAA
4481 TTGGAAAAAGAAAAACAATGCCAGAAAAGACAACACACTTCTACTTTGGAATTGTTCTTATGAAGCCAAATTAAAAATAA
4561 TTTTAAAAGAGGTCATCAGCGTGAATTAGCACAGAACAGTCAATTTCGGGATTATGATGCCACTGTGTGATTGCGAAGCA
4641 CTCGTCTGGCTGTCGAGGTTTATTTGAGAGAGCACAAAGTTTCCAGACATTACTTATGCAATGAGATTTGTAATAGCTTT
4721 GTAATTACTGTCCATTAGGTCACACCCCAATTTCCTTAATGTTTTCCACTGATACATTACCAATCAGCATCATGGCTGAC
4801 ATCTGAACAAATTCCAGTTGAACACTGCGGAAGGTTAGATCAGTGTCTGCAGTGTTTGTTTTAATATGCAAATAGAGTCC
4881 TATGTTGGTGTTTATAGCCACACGGATGAAAACGTACAAAATTTTCTACCTAAAAATTTTAAGACACTTAACTTTCTTAT
4961 AAAAAGGTGGCTCTCTAGTTTCTTGAAAGTGAAGGTAGGATAGAAGAGGGAGAAGAGAGGAGGGAGGAGGGTAAAAGAGA
5041 GAGAGGGAAGGGGTAGGGATACATAGATTAGTAACACACTCAGTGCTGCACTGATCAGGAGGTTCACATTTCTTGTTTGC
5121 ATTCAAAGATAAGCTTCTGTCATTTCTCTTTGGGAATATCACCTGAGGTCAAATAACATAGACTCAGTCCAATCGTTTTT
5201 CACTTACCTTGGAAGGCAGTAGCAAACAATTTATGATTGGCTAAAATCAATTTTCATAAATGATCTGCGACAGATTCAGA
5281 AAGGCTTGACACTATCTGTTCCCAGGCATCTGGTCCAGAAGTCCAGGTCAAAACCTTGTCATAAAACCAGACTGCCTGGC
5361 ATTATTGCAGGAATCAGCTTTAAAGATCCCCAGCATCTGACCTAGTTAGACTCAAGTACAGACCCTCCATGCTCTGAAGG
5441 ACTGTCTCTTTAAATCCTTCACTGTTCTTGACCAAATGACAAGAAAAGGGAATTCTGTCAATCACGTTTCTTTGTGTGTC
5521 CCAGTCGGGGTATTGTTTTATCCATCCAGACATCAGCCTCACTTTGGAAATGTGAAGTCCTTTAATTTCTGGTAGGAGCA
5601 TTCTACACTAACTAGAGGAACAGGTTTTAGGCCTCAGGTTGACACACTGATGAGGAATTCTAAGACTGCAAAATCACACT
5681 GCTCATAATTATCTTCCTTGTTTTGTGAAGATTGACTTGAAAGACCCATAGATATAGATACTTACGTCCAATTTAATAAT
5761 TACTTTGATTCATTGTATTGAAAATGACGAATATTTAATCTTCAGTCAAATTAAATAATCTTATTTTCCACCTAAAAGGT
5841 TACTTCAAGATAATACTCGCTGGGCAGTGGTGGCGCACGCCTTTACTTCCAGCACTTGGGAGGCAGAGGCAGGTGGATTT
5921 CTGAGTTTGAGGCCAGCCTGGTCTATAGAGTGAGTTCCAGGACAGCCAGGGTTCCAGGGTTCCACAGAGAAACCCTGTCT
6001 CAGAAAAAAAAAAAAAAAAAAAAAAAAAAAGATAATACTCAAAGAGGCTTCACCTCTTTGAAACTGCTTATTGAAGCTAT
6081 CTCCAAATCCTGATAGTTATGGATGATAAAAATCTTCTAGATGTGCGCTTCCTTTGTCCTGTCTTTGAAACATGGATAAC
6161 AATATATTTTGTATATGACACAAATATGACCATAATTTGAAAATTATCATTGCATAATGCCTACTTTTAACCTGACCTGT
6241 TTGGTATGTCTGCTTAACTAACTGTATATTATGTAACTAATAGGCAATTGTTCTGATTACTAAATAGCATATTCATGATT
6321 GATATCTCTCCTGGCCATGGCATTCTTGGTCTCAGTAATATTTTATGACCATCTATAAACCCAAAGAGATTTTCTAAATT
6401 TTAAGTTCTTTGGTTGAAATGGCACAGAACTTTTGTCATTCTATGTCCAACACATATTGCTTTTCCCCTTAAAGTCTATA
6481 AACATCTCATGAGTTTGGTGGCTGGGAACAGTGACTTGAGTACAGATAAATCTAATGAATGAAAGTTACAAACAAATGGG
6561 CTATTAGGGTGATGTTTTAAGTTAATAATCATACCATTTGTATTCCAATAATTTTTATATCTTGTCATTGAGATAGATAT
6641 ATTCTCTAGTTTCTTTGATGTGATAAACACCAGGACCAAAAACAAGGTAGAAGAGGAAAAGTTCTATTTTATCTTAGATG
6721 CTCCAGTCTACCATGAGGGAAAGCTACATCAGGACCTTATGGTAGGCACCTGGAGGCAGAATGTAGCACAGAAAGCATGA
6801 GGAACACTGTTTCCTGGCTTGCTCAGCTCTTACACAGCCCAGGGCCCCTGCCTATGGATGGTACTGCCCACAGTGGGCCA
6881 GGCCCTCACATCAGTTAGTTATCAAGGAAATGCCAAACAGCAAAGCTCAAACGTCAGTCTGATCAAGGCAGTCTCTAATC
6961 CAGACTCCCTCATACCATTTGGGGACATGTCCAGCTGACAGCTGAAGCTAACTAGAGCATATAAAAGTACATACATGTAA
7041 AAACTTTTCCCATAGGGTTCTCCAAAGAACTAAATTTAAATCCCCACAAAACAGTTTTCAGAACTTAGGCAAACTATAGT
7121 TTAAAGAGCAAATTTTAATTAAGGACTTAGATTGTAATTAATTCAAACAAATTTTATTATAATGGTCAGATTCATTTTAT
7201 GGGTTTTTTTTTTTGTCTATTTGCAAATTACTAGAATAGCATGATTCCGTCTTTTTCTGATTTTTCAGCAGAAGACCATA
7281 CAATCTACATTACCTAAAATGTCTATCTGGCCCTTTATAGGAAAAACAAAACTCAGTTTTTCTCTACCCGTCATGCTCTG
7361 CGATGACCTTAGGAATCCCTTTTCCACACTGTAGCTTCTTTTTGCCTTAGTTAGATTCTCTCATTTGCTTCTTAGAAGTT
7441 AGGTGATCTTTGTTTCATGTTGCAAATGGTCTCACAACTGCGTAGGAGGCAAAAATTAAAATTTCCATGTAGAACAGAAA
7521 ATGTAAAGTCACATTAGTTATTTCTTAAGAAGGAAATTGTGTGACTTGAGTTAAAAGTGCGTGTTCAGATTCTTCATTGT
7601 TGAACAGGTTTTAGAAACTTTAAAGACACGTGGATTAAACAGAAAACCATAACCAACACTGCCTCGTGTCATCGTCATGC
7681 CCTATTGCTTAACAAGCTTCAGATGAGCACTCATTGGCTCCAAACCTCAAATGCAATGAAATGATTTCTAGCAATTCGAT
7761 TTTCACAAACATTTAGGAAGTGGTGTGTTGTTCTATGAAAATGACTTGCTTGCCAGCAGTTCAGGGAATACAGCCACCTT
7841 CATTTTTAAAGTTATTTTCCTTTACCCACATGTGTTTCTCTGAGTGTTGTACTTCTCATGTGAAAGGAGCCGTTAGTACA
7921 TAGTTTTCTAGCAAATTTAGAAACCCTCTAGTCTATTTCTCCCCTGACAAATTACCATTCCAAAATATCTGCCTTAAGGG
8001 AACCAAGTAGCCCAGTTATCAAGGGAACTTTAGACATTTGTGACTTTCCTTTCAGTTTGACTGTCAACTTTGTAACCACA
8081 AAGGTCACAAAAGATATACTGAGTAGGAGACCTTTATTCGACCTACCACTGGGAATAGTTACAATAACCGGCATATTCTT
8161 TTCTTTAAACAGTTGCAGCAATCAGTAAGATGTTATAGCCACTGGGATGTTACAGAATATGGGAACAGCAGGGCAGTGGT
8241 GGCACATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGT
8321 GAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCACCGCCCCCCAACCACCCCCCCCAAAAAAAACAAACAA
8401 CAACAAAAACCAAAAAACAGAATATGGGAACAAATGACAGAGTCATTCTCTGAGCCCCGGTGGTTAACAAGGGTAGGAGG
8481 CAGACTGCTGGAACAAGAGAGGGAAAGGTCACTTAATATTAGGATTCCACATTCTTATCTGCCAGTCTTCTAGGGTGGCT
8561 CAGAGTTTGAGGGCAGTTATTGATATACTTCAAACCTTAAAATGAGTTGGTGAAAATTAATATCTAATTTTCCTTTCAGA
8641 AATTATATAGTATAGCTTAGAGGATATCTGGCCTACATGGAAAGCCACGGTTAAGGGCATGACTCACTACCAGCAAAACC
8721 CTTCCCAGAAATAGACCATTCCAGGAACTCTACTTCCCATAGTAAATGTTCACTGATGAGCCCTTACTTGCAATACAGGA
8801 GTCAGAAATGAATTAAGCACAGTGCTGCCCTTCAGGGGGAGCCTTTTTAGTTGGGAAGAAAAGGCAGGTAACCACACATA
8881 GCCTGTGCTGAGTACCTACAGATGGTAAGCTCTCCGGGGTGGGAAAAGGGAAAATGGTCTCACACCAAAAATGTGCAAGG
8961 CAAGCTTCATGGGAACACAGCTAATATTGAAGGATGTACCAGTCCCTAAGGTGGAGAAAAGGGACATGTTTGATTAAGGA
9041 ATGGCCAGACCAGGGTGGAGATGCACACTTCAAGGAGGAGATTAACGTGGGATGAGGAAGGCTGAGATACCCAGTGAAGT
9121 GCTATCCAGTGTGGAGCAGTCTCAGATCTCATCTGAGTTCCTTGCTTTCTTACTCTGGACAGATGCCGGTGAAGCTCTTC
9201 TGCAGAGCACCTACCCCTACGACTTGGCTAGCCTCCTGGTACATAGCTAACAGGATAAAAATCACCCAAGATATCGAAGA
9281 CATGTTTGCAACTCCACAGCTAATCTTCAAACCTCAAGCTGGTCCTGCCAGGTTTTTAATTCTTCAGTCTTCTCTCCAGT
9361 GTATATAATCTATACATTTATAACTATAAATTATATAAAATCTAAGGAATTTATTATATCTCTTATTGGAGGCACTATTT
9441 TTCCATTCATCTTCAAGACACCTTTTTAAAATTACCCATTAGAATTAGATTACCCTGTGACTACTCTGGCTTGTACATCT
9521 TCACTTATTTCTCGTGATATTTGTGGATAGTAGATGGCTACATTCCTCCAGGATAAATAAAATGAGGAGAGGTAGAGACA
9601 AAGACTGTATCTCAGTTGAAGGGGAAAGATGCTAAGAAATAAAGATGCTGTGGGGACACAGACCAGGTTAGTGGACACTA
9681 AGAAAGGAACACTTGCTAGGAGGGGGTTTCTGGCTAAGATGGCATTATCTGAGACACTCTTGTTGATAGTTTGTCAGATA
9761 TGAAAAATACACTGATGGCTGTTGAAAGCCTTTTGGATTAATGGGACATAAGTAGCTTCAACAACAACATGGAAGAATAC
9841 AGAATACCACCATATGAAAGAAACACAGATTTCCAATAGTCTGGATCACAACTCATTGACCCAAAGCAAGAGCTCATATG
9921 ACTTGGAGGAGAAAGTCTAAGTACCTTAGTTTACACAGCTAAGACTATGGTTGGCTTTTTCACTTTCTAACACAAAGTCC
10001 TAAGAGGGAGCTGTAAACATTTCATTTTCTAAATGTGTCAAAATGGTGCTATTGATTCCTTAATACAAAGATAGAATTAT
10081 AATATTTTTAGGTGTGTTAAGCCCAGCTTGGCTATAAATGTAAATACATAAAATGTTTGCAAAGCCTTCAACAAAAACAT
10161 GTCCATTTGCTAACAGTTGAGGTACTGTGTTCTTCAGTGTGGGTGACTGACCTGAGTTTGCATTTTCTGTTAAAGGAACA
10241 GGACAGCCACTGGCTCTCTCTCAACTGCCAAAAATCTCCGACATTTGCAGCTCACTAAGTTCTCCTTGGATGCAGGTTGG
10321 ACAATCCAAGTCAAGGATTAAGTATGCTCATTTGGTGATAGTGGGGGTGTTGGCCAAGAACTTGGGGGATGTGTGCTGTG
10401 AGCAAAACCAGTGCTGCCAGACTAAACTTTAGTGAGGTCCAGTGTAACTGAGTTCACCCAGACTGTCAGAACATGCCAAA
10481 GGAAGCTACCCAGTACCTTGCAACTGGTCAACCTGTGAAAGAATCTGCATGTACAATGTGACAATAAATCATCTAAGAGC
10561 CCACCA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ugUAA----CGGAUCCUUAACAAAUGu 5'
            |||    |::|| | | ||||||| 
Target 5' aaATTAACAGTTTAAGCA-TGTTTACa 3'
 3522 - 3547 154.00 -8.10
2 
miRNA  3' ugUAACGGAUCCUUA-ACAAAUGu 5'
            | ||:| : | || |||||:| 
Target 5' ctAATGTCAGTGCATGTGTTTGCt 3'
 139 - 162 141.00 -8.20
3 
miRNA  3' ugUAACGGAUCCUUAACAAAUGu 5'
            | | | ||  || |||||:| 
Target 5' taAATACATA--AAATGTTTGCa 3'
 10121 - 10141 137.00 -6.90
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions CD4+ T cells (C57BL/6)
Disease MIMAT0004745
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "HITS-CLIP data was present in GSM1013593. RNA binding protein: AGO2. Condition:CD4+ T cells "HITS-CLIP data was present in GSM1013594. RNA binding protein: AGO2. Condition:CD4+ T cells ...

- Loeb GB; Khan AA; Canner D; Hiatt JB; et al., 2012, Molecular cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' uguaacggauccuuaaCAAAUGu 5'
                          |||||| 
Target 5' ----------accuuaGUUUACa 3'
 		1 - 13
Article - Loeb GB; Khan AA; Canner D; Hiatt JB; et al.
- Molecular cell, 2012
MicroRNAs (miRNAs) are essential components of gene regulation, but identification of miRNA targets remains a major challenge. Most target prediction and discovery relies on perfect complementarity of the miRNA seed to the 3' untranslated region (UTR). However, it is unclear to what extent miRNAs target sites without seed matches. Here, we performed a transcriptome-wide identification of the endogenous targets of a single miRNA-miR-155-in a genetically controlled manner. We found that approximately 40% of miR-155-dependent Argonaute binding occurs at sites without perfect seed matches. The majority of these noncanonical sites feature extensive complementarity to the miRNA seed with one mismatch. These noncanonical sites confer regulation of gene expression, albeit less potently than canonical sites. Thus, noncanonical miRNA binding sites are widespread, often contain seed-like motifs, and can regulate gene expression, generating a continuum of targeting and regulation.
LinkOut: [PMID: 23142080]
CLIP-seq Support 1 for dataset GSM1013593
Method / RBP HITS-CLIP / AGO2
Cell line / Condition CD4+ T cells (C57BL/6) / CD4+ T cells, WT, biological rep7
Location of target site NM_009793 | 3UTR | CCUUAGUUUACACAGCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23142080 / GSE41285
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1013594
Method / RBP HITS-CLIP / AGO2
Cell line / Condition CD4+ T cells (C57BL/6) / CD4+ T cells, WT, biological rep8
Location of target site NM_009793 | 3UTR | ACCUUAGUUUACACAGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23142080 / GSE41285
CLIP-seq Viewer Link
37 mmu-miR-384-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT577998 Pgr progesterone receptor 2 2
MIRT578191 Narg2 interactor of little elongation complex ELL subunit 2 2 2
MIRT578276 Mesdc2 mesoderm development LRP chaperone 2 2
MIRT578464 Ints12 integrator complex subunit 12 2 2
MIRT578486 Il18r1 interleukin 18 receptor 1 2 4
MIRT580032 Wdr89 WD repeat domain 89 2 6
MIRT580041 Wdr44 WD repeat domain 44 2 2
MIRT580302 Tomm70a translocase of outer mitochondrial membrane 70 homolog A (yeast) 2 2
MIRT581000 Six4 sine oculis-related homeobox 4 2 2
MIRT581273 Rrad Ras-related associated with diabetes 2 2
MIRT582217 Nfatc3 nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3 2 2
MIRT582447 Mgea5 meningioma expressed antigen 5 (hyaluronidase) 2 2
MIRT583055 Hoxb3 homeobox B3 2 2
MIRT583626 Strip1 striatin interacting protein 1 1 1
MIRT583683 Amer1 APC membrane recruitment 1 1 1
MIRT583923 Dpy19l1 dpy-19-like 1 (C. elegans) 2 2
MIRT584696 Cep170b centrosomal protein 170B 1 3
MIRT585027 Gskip GSK3B interacting protein 1 1
MIRT585242 Zfp446 zinc finger protein 446 2 2
MIRT586100 Reep4 receptor accessory protein 4 2 4
MIRT587716 Cd300a CD300A molecule 2 4
MIRT588342 Zfp711 zinc finger protein 711 2 2
MIRT588629 Tnrc6b trinucleotide repeat containing 6b 2 6
MIRT589300 Pigh phosphatidylinositol glycan anchor biosynthesis, class H 2 2
MIRT590164 Eno2 enolase 2, gamma neuronal 2 2
MIRT592642 Lpar3 lysophosphatidic acid receptor 3 2 4
MIRT593646 Tbc1d5 TBC1 domain family, member 5 2 2
MIRT595037 Camk4 calcium/calmodulin-dependent protein kinase IV 2 2
MIRT595222 Slc16a1 solute carrier family 16 (monocarboxylic acid transporters), member 1 2 2
MIRT595455 Ptrhd1 peptidyl-tRNA hydrolase domain containing 1 1 1
MIRT595822 Fam227a family with sequence similarity 227, member A 1 1
MIRT596023 Cdk13 cyclin-dependent kinase 13 2 2
MIRT596361 Serpine1 serine (or cysteine) peptidase inhibitor, clade E, member 1 2 2
MIRT596421 Ing1 inhibitor of growth family, member 1 2 2
MIRT596514 Zfp9 zinc finger protein 9 2 2
MIRT599311 Csf1 colony stimulating factor 1 (macrophage) 2 2
MIRT603174 Trp53rk transformation related protein 53 regulating kinase B 2 2

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