miRNA Infomation | |
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miRNA name | mmu-miR-1194 |
Gene Information | |
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Gene Symbol | Unc5d |
Synonyms | D930029E11Rik, Unc5h4, mKIAA1777 |
Description | unc-5 netrin receptor D |
Transcript | NM_153135 |
Expression | |
Putative miRNA Targets on Unc5d | |
3'UTR of Unc5d (miRNA target sites are highlighted) |
>Unc5d|NM_153135|3'UTR 1 TCTGTTTCTTCTCCGGAGGCAGCACTAGTGATGGCCTGCTTCAGAGCAGTGGCTTCAAGTGGGGAAGACAGGGCAGATTT 81 CTGCCCCGGGGCATTTGGGGGGGAACTCAGCCTTTATTGAGAGTCAGTGAGAAACCCTGGATGAAGAAAAGGAGTTTGAT 161 ATAGGTAAAAACATGTTAACGGTGGGGGAAAAAGAGAACCCCGCTATACCCTCTGAATCCACACATGGGTAGACATTGGA 241 TATGCTCCTCAAATTCAGACTGCCGAGGATTAAAAAGTGAAGGTATCTGTAGATACAAGTAGTTTTGAAAACCAGATACA 321 CAACAATAAAGCCGGGAAGGCAGAGATTTAAGTGCATGCTTGGAAACAGGTTTTTAATGACTTGCCCCACGGGCCAGATG 401 ATCCTGAGACCAGATTTTCAGATTCCAACCGACTGGCATCCCAGAGGTTGGAAATCATAATAAGACTAGCTTTCAGAAGT 481 GAAAGCAGATTGCCAACTTATTAGTAAGATGTCATCAATGTCAGGGAGGGCATTTAGAATTTAGAATCTGAGTACATGAC 561 ACCAGCACTTATTATATGAGTCACTTAACAGAGACAAGATCAAGAAGGGAGATAGACCTCAAACTAGTTCTTGGTACCTC 641 ACCTTCATCCCCCACCCACCCACTCCCGAGACAAAACTCATTTCTCTCCTATCCTAAAAGATTGCAGTATGGAGACAGTA 721 AAGAACATAGTTATTCATTTCAATATGGAAACATACTTCCTTTAACTCAACAGAGCAGGACAAACAATCTCTGTTCCCAG 801 CCAAGCCACTCTAATGTCAGAGTGCTGTTATAATATGACTTATTCTATGGAGTGTTGATAAGAGAGGCTATACAAGGTCC 881 AGGAAAATATATAGACTACAGATGTCCCAGGCTTTGAGTAAGCGCTGATTTTAGGAGATGGGTAATTAACCCAAGTTCTC 961 CAACATTTTTCACATAAGAAATGTGTTTTGCTGTGTTTTTTGATCCAGATTCTGGAAATCTTCTAAACTTTTGTACTATG 1041 CTGTCATAGTATGTTTCAATAGGGCTTTAGGACCTCCTGCCATCGTCTCTCGGAAACTTACCTGATAGCCTTTCTGAGTA 1121 ACACCTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAATAAATGTCTCCAAGGAAGAGAACCCTA 1201 CCACACTTTCCTAGGAACCATACGCATCATTCAGAGAGACTTCTGTGCTCTGACTGCCTAGCCACACCATGTGTACTTTC 1281 TCCTTAACAGTATTAACTCATAGCTTTCATTTTAAGTTACATACACACACACACACACACACACACACACACACACACAC 1361 ACACCAATAGTATTTTAGAGAATTGAAATCTGTAGATTATTCACAAGCTTCATCTTATATTTTACGACACTTTTATATTT 1441 GAATACATCATTTTGACCAATATTCTGAGAGACTGAAGATGAACAGATATACTCTTCTTCTGGAGGAAGTTTTCAGTAAC 1521 TGCCCACAAGGAGGACAACCCAAGCCAACCACCTACATTAACTTCCAGGCAGCTACTTAGCTTTTTTTTTTTTTGAGGAT 1601 GATTACGTTTGAAAAAGCATGATCAGAAATAGGACAAAAAAGAATCCTTGGGAATGAGGACATGACATGCTATTGTTTTT 1681 ATAGGTCCTTTGTGTGAAAACAAATGCTCGCAACCTCTTCCCAAGTGGAAATACCTAAATTCAGGTTGACGTTATAACCC 1761 CTTGGAACAGACATTGAAGAATTCTTGAATGTGTTAGCTATTTTTATCTAACGAGCATGTGATATATCAGGTCCTCCATA 1841 TCACATAAAAGGCTTTGCCGTGTGCAAATCAAAAGAACCCGGGTTGCTTTGCTCAGGAATGAAAGGCTTACTCTATTGAA 1921 CAAATGAATCATCTTCGAACTGACAGACTTAGTCAGAATGCCATATCTGGATCAGGAGAACACCATTTTCCCTTAGACTC 2001 AAGTTATTTATTCATCCTTGTGAAGAAGAAAGAGAAAAGGCATATAGAACTTCTTGGCATCACTGATAGAGTTTCTGGGA 2081 GAAGAGATGTAAATGGTTGATGAGCTACAAACCAGATGACGATGAACAGTAGGGTCGGGTGCGGGCAGAATCGGCATCAC 2161 TTGTTAGGTAACAAACTATTTGCAACACACTCTAGAGAGATCCTATATTAACATCTATGTGGAAGATTTTTGTTTTACAT 2241 TTCCTACCCTATCCACTTCTCTTCTTTCCCTTCCAATTGGCCTTATAATTGTTTATATGTTTTGTGAACCTACACACGTT 2321 CTTTGTAGATTTTTAACAGCTTTTTTATAATATTATAAACAGATAAAAAATTGTAACTGTCCTGGCATCTGTGTAGGTTA 2401 TTTTAAGGTGAGGTAGCAGGAACAGCATGAAGGTTGGTCCCATGTGTCTGCAGTTGCCCCCATTAGATTCAGGTTTTGTG 2481 TTCTGTTTGTTTGATTTTTTTTTTTTTGGCCTGTGTTTATAAGTGCACTTGATCATAATATCACATGAGGTAATAAGGGA 2561 GGCGTCAACAGGAGTCACCTCACATCCCAGACCATGGTTCAGTGAGGTTCCCCTTGACTTTTTATGTTTCCTTCTTTATA 2641 TCTATCTTATTTCTGCTAGGATGCTACACAGGATTTTAAAATAAATATGTCACATTCTGTGGTCTTTGAATGCCAGGGTT 2721 GTGGTATAATATTTTACAGTGAAATTTCAAAGAGAATCCTGGTCTGTGAGATTTACAGACCAAGGGATTGTGTGTGTCCA 2801 GGGAGGGTCTGCAGGTCTCAAGGCTTAGCTCACACTTGAACATGCAATGACTCACTGTGACCCCAAGCTTTTGCATGACT 2881 TTCACCTGTCACAGCTCAAATGCCCATCCTGGAAGAGGTTTCCACATTACTCTGGGCGCTAAATTCGGAAGTGTCACTGT 2961 CCTAGTGCAAGATAAAACAAAAATTAAAAGTGTCCTTAAATACTTAAAAACATAAATTTTTTACAAAAACAATCCTACTC 3041 AATGCCAAATTTCTCAGTGCTTGGAGACATTAAATCTATACTTTAAATATGAGTTTAAATTTTGCCACAAAAATGGTGAG 3121 ATCCACAGGTTTGCTAGACTACAGCAGCATTACGTTAATTTACAGTCTCTACCACTCCACATACACAGTCTGAGTAGTTT 3201 ACATTTGCATTCTTTAATCCAAAAGGAAACTTGTTCTGTGGTTTTAAATGCTACCTTCATTCACCAGTGCGGGTAGACTC 3281 ATAAAACTCAGATGTACTTCCACAAAATTTTATTGGCCTTTTTGTAAGGGATGAAGGGAATTGAGATAGTTTCCTTTAAA 3361 GAGAGGAACTTTTCTCTTATTTTTATCTCCAACTGCTGTGGTCCTGGTATTTTTTTTTCTTCTTCCTCTTCATTCATTTG 3441 GCTATGAGAAGGACTATTAAGTCCAATCACACAGGGTTCTCTTTGGAGTAAAATATTTATTACAGTGATTTTGTTTCCTG 3521 GACAAAACAAACAAACAAACAAACAAAAAACAAACAAACAAAAAAACCCTCTAAATATCAAACATGAAAAGCAAAGCTAG 3601 AAAATTAAAATGGCGTGAATGGTTTTATACATTTTGACCGAATTTACCTGTGACTTTCAGAATGTTAACAACATCTTTGG 3681 ATATGTTTCTGTTTTAGATTTTTCCTTTCAGATATTTTCAGTTTCTTGGTCTGCCTGGCCTCTGTAAATGTGTTGAATGA 3761 TAGAGCTATCAGGCATGCTAAGGCAACACTCTCTGAGGTCTTTATTCCAGCAGAAATGAGGAAGGAGCTGAAAAACGTGC 3841 CTCTCTGGCCTACTGCGCGGCCCATTTTCATTCTATTGCTCATGAAGCATTGCAGAACCTGAACACTTAGTAACTCCCAA 3921 AGCCTGGACTACAGGTGACAGTCACAGCACCTGCAAGAACAAAAGCGTGGGCTTACCGATGGTGACCACATTTTATTAGC 4001 CCTTTGGTGTTCATTGTCATAGAGCTGTATTTGAACATTGATGCTTTGGGCCAAGACTTGAATGGCCACCGTTTCAATAG 4081 TTGCCACTGTTTTTGTCCGCATAGAGTTTTTCTGAACTACAACAAGCAAAACTGTATTTTGTCAAATGTCACAAAAGTGA 4161 AACTGTTACTAATCTTAGATGTGTTGCATATTTTGTGTTTCTTTTCCAAACTCTTTCACTAGCTGCGGTGACAAAGCTGT 4241 TTGGCTGTATTGACAGCATGTGGTGTCTTTTCCAGAAGCAACTCTAGGAGAGCCAGTGTCTACTGTGGACTCCTCACATC 4321 CCCATTACAGGGTCACCAACAAAACTGAAATGGCAATTTATATGCTGTAATTTTTTTTCCCTGAGAATCAAAGGGGATGG 4401 CGCCAGGCCTGGCTATTAGTCACTAGTGTGTAGTACTGTGATCAGAAGTAGGAAGTTTATCTTGCATAGAATAATTGTGG 4481 TTTTTGAGGCAGCTCCTCATTGCTTTTTTTTTTTCCTTTTGCTGTGAAGATCATGGATTTGGGGTGTCCTCACGAAGTGG 4561 GCCTAAGACAGTAACGTTGCAACTTCATGTCTTCGAACCTACCATGTATCTGAACCATGTATCTGAACCCAAAGATTAAA 4641 AAAAAAAAAAGGCAGGAAGCATCCTCGACAGGCCTAAGCTCCCTGCCCCTTATCAGTATTAACTTCAGCAGGAGTTATAT 4721 CTTTTTTCCACAAAGTTCCACCATTTGATTCTATTATATATCAGAGAACCTGCTAATGACTTTCTTTTTGGGAATAGAAA 4801 TATGTGTCAAATACTTTCACTAAAGGCATGGGTATAATGAATATGCCCCTTTGTTTCAAATTTATCTGACTCATTAAAAA 4881 AAAAAAAGAAGAAGAAAGAAAAGAAAAGAAATGATTCAGACCGAAATTCCAGAATTGGGAAAGTTGTACAATAACCTTAA 4961 AATTGGATACATTTCTAGTCAGTAATGAACCAACTAGAGTTCTGATGAATGCATGATATTTAAAGGGAATAAGCCAAATG 5041 TCATGCCACAAGACCCTTTCCCAAAACACAAGCATTCTGCTCAAATGTGGAGACAGCAATTCTAATGTTCCTTTGTTGCC 5121 AAGCATGGGGAGTGGAAAGATGGAGAATAACCAGGACACACCCACCAGGGCTTCCTGGGAGAAAAGCTGAGAACAGAAGC 5201 CCCCAACAAGGGCCTCTCCTAGATGCTTCCTGCTCCCATAGAAAACTTCTCGATAACAGGGAAATACCCAAGTGTCAAAA 5281 TTCCACTATCAGGGAAACGGCTGTCTCCTTCTCTACACCACATGAAGAACAGAATTTCTGTTCTTCGTAACCAGGTCTGA 5361 TTGGTACAGACACTCCAATAAATCATGACCTAGAAGTATTGTCAGCATGGACAGGTAGAGAAGTGCTGACTCATTTTCCT 5441 AAGCCCAAACTTGGAAATATGGGTGATATATTTCCCTCCTCCTATAAAGGAGAGTTTCAAACCTATTTCATTTTGTTCTG 5521 TTTATTTTGGGAAGGTACATGGGGGTGTTCTTTCAAATGATTCATTTAGTTTTTTCAAACCCATACCACTCTCAATGTTC 5601 ATTTGATGTGTTCAAAGCCAAAAAAAATATGAAATAACATTTTAAGCAGAGCTGAACACTAACTCGGACATGAAGCTGAA 5681 GGAGTGAGCAAGCCACAGGAGAGGGTCTAAGCGAAGCATGGCCTTGGCTTCATACCACACTTTTTGTGCCTTGTATTATC 5761 AGTGTAAATTCTGAATGTTGTACAGTAAATACTTGGATGGACTCCTTAGCAAGGATGCACCGGCTTCTTTTTTCAGCACA 5841 TGTACATATCTATAAATATATATACATATATATTTGGTAATGCCAAACAGCTATGTTATATTGTACTGAACAAAATGGCC 5921 CGTTTGGATGTTTTATGTAGAGTTTGCAAAAAAACCAAAATGGATGGTTATTGACTTTTCGAGATAAATGTACAGGCATA 6001 AATTACTGCTTACCAGTTATTTATGAATAAAGAGTCTTTTCTTGACATTTT Target sites
Provided by authors
Predicted by miRanda
DRVs
SNPs
DRVs & SNPs
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Experimental Support 1 for Functional miRNA-Target Interaction | |
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miRNA:Target | ---- |
Validation Method |
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Conditions | CD4+ T cells (C57BL/6) |
Disease | MIMAT0005852 |
Location of target site | 3'UTR |
Tools used in this research | TargetScan , miRTarCLIP , Piranha |
Original Description (Extracted from the article) |
...
"HITS-CLIP data was present in GSM1013581. RNA binding protein: AGO2. Condition:CD4+ T cells
"HITS-CLIP data was present in GSM1013582. RNA binding protein: AGO2. Condition:CD4+ T cells
"HITS-CLIP data was present in GSM1013584. RNA binding protein: AGO2. Condition:CD4+ T cells
"HITS-CLIP data was present in GSM1013594. RNA binding protein: AGO2. Condition:CD4+ T cells
... - Loeb GB; Khan AA; Canner D; Hiatt JB; et al., 2012, Molecular cell. |
Article |
- Loeb GB; Khan AA; Canner D; Hiatt JB; et al. - Molecular cell, 2012
MicroRNAs (miRNAs) are essential components of gene regulation, but identification of miRNA targets remains a major challenge. Most target prediction and discovery relies on perfect complementarity of the miRNA seed to the 3' untranslated region (UTR). However, it is unclear to what extent miRNAs target sites without seed matches. Here, we performed a transcriptome-wide identification of the endogenous targets of a single miRNA-miR-155-in a genetically controlled manner. We found that approximately 40% of miR-155-dependent Argonaute binding occurs at sites without perfect seed matches. The majority of these noncanonical sites feature extensive complementarity to the miRNA seed with one mismatch. These noncanonical sites confer regulation of gene expression, albeit less potently than canonical sites. Thus, noncanonical miRNA binding sites are widespread, often contain seed-like motifs, and can regulate gene expression, generating a continuum of targeting and regulation.
LinkOut: [PMID: 23142080]
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CLIP-seq Support 1 for dataset GSM1013581 | |
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Method / RBP | HITS-CLIP / AGO2 |
Cell line / Condition | CD4+ T cells (C57BL/6) / CD4+ T cells, 155KO, biological rep7 |
Location of target site | NM_153135 | 3UTR | CUCAUUAAAAAAAAAAAA |
Tools used in this analysis | TargetScan, miRTarCLIP, and Piranha |
Article / Accession Series | PMID: 23142080 / GSE41285 |
CLIP-seq Viewer | Link |
CLIP-seq Support 2 for dataset GSM1013582 | |
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Method / RBP | HITS-CLIP / AGO2 |
Cell line / Condition | CD4+ T cells (C57BL/6) / CD4+ T cells, 155KO, biological rep8 |
Location of target site | NM_153135 | 3UTR | UCAUUAAAAAAAAAAA |
Tools used in this analysis | TargetScan, miRTarCLIP, and Piranha |
Article / Accession Series | PMID: 23142080 / GSE41285 |
CLIP-seq Viewer | Link |
CLIP-seq Support 3 for dataset GSM1013584 | |
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Method / RBP | HITS-CLIP / AGO2 |
Cell line / Condition | CD4+ T cells (C57BL/6) / CD4+ T cells, 155KO, biological rep10 |
Location of target site | NM_153135 | 3UTR | CUCAUUAAAAAAAAAAAA |
Tools used in this analysis | TargetScan, miRTarCLIP, and Piranha |
Article / Accession Series | PMID: 23142080 / GSE41285 |
CLIP-seq Viewer | Link |
CLIP-seq Support 4 for dataset GSM1013594 | |
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Method / RBP | HITS-CLIP / AGO2 |
Cell line / Condition | CD4+ T cells (C57BL/6) / CD4+ T cells, WT, biological rep8 |
Location of target site | NM_153135 | 3UTR | CUCAUUAAAAAAAAAA |
Tools used in this analysis | TargetScan, miRTarCLIP, and Piranha |
Article / Accession Series | PMID: 23142080 / GSE41285 |
CLIP-seq Viewer | Link |
39 mmu-miR-1194 Target Genes:
Functional analysis:
ID | Target | Description | Validation methods | |||||||||
Strong evidence | Less strong evidence | |||||||||||
MIRT577399 | Usp29 | ubiquitin specific peptidase 29 | 2 | 2 | ||||||||
MIRT578645 | Gtf2h2 | general transcription factor II H, polypeptide 2 | 2 | 4 | ||||||||
MIRT583791 | Elf1 | E74-like factor 1 | 2 | 2 | ||||||||
MIRT585587 | Tox4 | TOX high mobility group box family member 4 | 2 | 4 | ||||||||
MIRT585769 | Spg21 | SPG21, maspardin | 2 | 2 | ||||||||
MIRT586369 | Pctp | phosphatidylcholine transfer protein | 2 | 6 | ||||||||
MIRT586934 | H2-T24 | histocompatibility 2, T region locus 24 | 2 | 4 | ||||||||
MIRT587278 | Fam154b | stabilizer of axonemal microtubules 2 | 2 | 2 | ||||||||
MIRT589358 | Osbpl8 | oxysterol binding protein-like 8 | 2 | 4 | ||||||||
MIRT591418 | Cd300a | CD300A molecule | 2 | 4 | ||||||||
MIRT594881 | Lpar6 | lysophosphatidic acid receptor 6 | 2 | 2 | ||||||||
MIRT594899 | Hs6st2 | heparan sulfate 6-O-sulfotransferase 2 | 2 | 2 | ||||||||
MIRT595087 | Unc5d | unc-5 netrin receptor D | 2 | 2 | ||||||||
MIRT595608 | Jazf1 | JAZF zinc finger 1 | 2 | 2 | ||||||||
MIRT595914 | Syne2 | spectrin repeat containing, nuclear envelope 2 | 2 | 2 | ||||||||
MIRT596713 | Ybey | ybeY metallopeptidase | 2 | 2 | ||||||||
MIRT597013 | Thoc6 | THO complex 6 | 2 | 2 | ||||||||
MIRT597522 | Rbak | RB-associated KRAB zinc finger | 2 | 2 | ||||||||
MIRT598050 | Nip7 | NIP7, nucleolar pre-rRNA processing protein | 2 | 2 | ||||||||
MIRT598082 | Neu3 | neuraminidase 3 | 2 | 2 | ||||||||
MIRT598528 | Itsn1 | intersectin 1 (SH3 domain protein 1A) | 2 | 2 | ||||||||
MIRT598953 | Ggps1 | geranylgeranyl diphosphate synthase 1 | 2 | 2 | ||||||||
MIRT598967 | Gata5 | GATA binding protein 5 | 2 | 2 | ||||||||
MIRT599086 | Efcab4a | calcium release activated channel regulator 2B | 2 | 2 | ||||||||
MIRT599348 | Commd7 | COMM domain containing 7 | 2 | 2 | ||||||||
MIRT599554 | C3ar1 | complement component 3a receptor 1 | 2 | 2 | ||||||||
MIRT600166 | Xpo7 | exportin 7 | 2 | 2 | ||||||||
MIRT600668 | March5 | membrane-associated ring finger (C3HC4) 5 | 2 | 2 | ||||||||
MIRT600971 | Dlc1 | deleted in liver cancer 1 | 2 | 2 | ||||||||
MIRT601455 | Tnfsf10 | tumor necrosis factor (ligand) superfamily, member 10 | 2 | 2 | ||||||||
MIRT601502 | Tmem88b | transmembrane protein 88B | 2 | 2 | ||||||||
MIRT601514 | Tmem151a | transmembrane protein 151A | 2 | 2 | ||||||||
MIRT601558 | T2 | brachyury 2 | 2 | 2 | ||||||||
MIRT601925 | Onecut3 | one cut domain, family member 3 | 2 | 2 | ||||||||
MIRT601984 | Mzt1 | mitotic spindle organizing protein 1 | 2 | 2 | ||||||||
MIRT602669 | Car5b | carbonic anhydrase 5b, mitochondrial | 2 | 2 | ||||||||
MIRT603331 | Slc35d2 | solute carrier family 35, member D2 | 2 | 2 | ||||||||
MIRT605546 | Ppp1r16b | protein phosphatase 1, regulatory (inhibitor) subunit 16B | 2 | 2 | ||||||||
MIRT606291 | Nrcam | neuronal cell adhesion molecule | 2 | 2 |
miRNA-Drug Associations | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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