pre-miRNA Information | |
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pre-miRNA | mmu-mir-743b |
Genomic Coordinates | chrX: 66777256 - 66777332 |
Description | Mus musculus miR-743b stem-loop |
Comment | None |
RNA Secondary Structure | ![]() |
Mature miRNA Information | |
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Mature miRNA | mmu-miR-743b-3p |
Sequence | 46| GAAAGACAUCAUGCUGAAUAGA |67 |
Evidence | Experimental |
Experiments | Cloned |
Putative Targets |
Gene Information | |||||||||||||||||||||
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Gene Symbol | Scaf11 | ||||||||||||||||||||
Synonyms | 1110061H03Rik, 2610510E10Rik, AI462454, CASP11, SIP1, SRRP129, Sfrs2ip, Srsf2ip, mKIAA3013 | ||||||||||||||||||||
Description | SR-related CTD-associated factor 11 | ||||||||||||||||||||
Transcript | NM_028148 | ||||||||||||||||||||
Expression | |||||||||||||||||||||
Putative miRNA Targets on Scaf11 | |||||||||||||||||||||
3'UTR of Scaf11 (miRNA target sites are highlighted) |
>Scaf11|NM_028148|3'UTR 1 GCTGACCGGGAGCACTGCCCAGGACACTGTGGAGATGTTTGGAGACTGCACTGCAGCGTGCGCCCTTACTGAATCACACA 81 CAACTGTGATGGAAATCTGGTTTTGATAAAATTATTTTTTTTATTGTAGGATATGTTTTGTTCAAAATATAGCTGTGCAC 161 TGCAACTTCTATATCTAACCCTAAACTCCAATAAAACAAATTCCAGGGAAAACCAAGGGTGTAATGGGATGTGCGTGTTT 241 ATCAGGAGTGTGCTCTCACGTGGATGCTGAATGATGGAGGACAGCGGACTGCATAAGCCAGAAACCTGTACGGGTGCTGG 321 CTGTGGAAGACGTGTCTGTCTCTATCTATGTACAATAGTTTATTCTGTCAGGCTGAAAAAGTATGGTCTTTAGGACCTTG 401 CCCCTCTAACTATAGAAACTTAAACAGTGTACTGCTATTAGATATATCTGATATTAATAGAACATGCCAAGTGCAGGTCC 481 CAAATGCGTATTTGTGAAGCACACATCTGAGTAAATGGCTTAGATGGAAAGCAAGTCATCATGAGTAAAAATTAGCCTCA 561 AACCTGCCGGTGCTCCTCACCTCTTTGTCACCAGGTAAAGGTCACACTGTGTGTTGCTTTTGTTGTCTTCTCTCCTAACC 641 TAGGAAAAAATAAATTAGTGGTTTAATTTGCTACATTACAACTTTGCCATTTCAAGGCTTTGTTGAATTTAGAAGACTAA 721 CTTGGGGGAAAAAAACCAAAACTATGTTCTTTCATTATACCTTCTATTTATCAGTGGTAGTAAATTATTTGTGCCAACTG 801 GAAACATGCTACTTGGTGGTGACCTTCCTTTCTGGGGGACTAGCATAGATTACATGACCTGCTTTGGCAGCTCCGGGTTG 881 CTTTTCTTCTGTCATGGTGTCAGTGAAATTCTTCTCACACTTCAGAAGTTCCCTAATGGGGCTGGCGAGATGGCTCGCCA 961 GGTAAGAGCACTAACTGCGCTTCCAAAGGTACTCAGTTCAAATCCCAGCAACCACATGGTGGCTCACACCCAACCGTAAT 1041 GAGATCTGACGCCCTCTTCTGGTGCGTCTGAAGTCAGCTACAGTGTACTTATTTATAATAATAAATAAAGAAGTTCCCTA 1121 ATGGTTACAGTGAATAAAGTGTTAATTTGTTGATTGGTAGCTCTGCTGCATAATTCTAGATACAATAACTATGTCTGACA 1201 GAAGGAAGGAAAATTAAATAATGCTATTTTTGCATAGGTATCAGGGACTAGAGTTTGTTGTTGCTGTTGTTTTTAAAGCA 1281 CCAAGATGTTAATATGTTGATGTTGATGCAGAGTGGGTTCCCAGTGCTTGTGACACTGCTGCTTTCATTGACATCTAGAA 1361 AGGAGACTGATAAACTTGGACTGCAGTTACAGTTTTCCCGTTGGTATCAAATAGCTGAGAAGATGTTCCCATAATACGGG 1441 GATAGAGCAGGATAAACACTCAGTGAGGCCTACCCATTCACTGACAAGCACAGTGGTCTCTGTGAGACTGTACTTTCTAG 1521 AGTGCAGGCAACCTCGTTCTCAGTTCTGCATAATGCATTCCAGCCAGCTTTGAAAGGAAGGCGAATTTTGTGATTTTTAA 1601 CCCATAGTGATTGCACTAGGTAAATAATAGGCTTTGTTAGGTTATGCTTATAGTCCTTAAGCATTTCCAAAAAGTTTTTG 1681 ATCTTCTTTTCTACATTTCTGTCATTTATGATGCAATATTTTACATTTTTAATTAAAGTCTGTGTGAACTTATGATGGCA 1761 GATGTGTGGAAGACAGTTGTATACATCCGCGGCTCACCTTGTTCCTTTCAGTTCAGGTTCAGTGGTGCACACTTCTGGTC 1841 CTGCTTTGACATTTGTGTGTCAGATGCTGTCTGTCCTCTTCTTCTGCAGCAGTGCTCTGCCTGCATTGTTCTACTGACCC 1921 CTGGGAGTAAATGGCAGTTTAAGTTGTGTTTTATACTGTTTAGCTCTTGCAAAGCAAGTTTTAAAGTTTAGGGGAAAGTA 2001 GGCGTTGTGTGAACTGTTAAGGCCCCGTGCTCTGGCAGAGCTCCACTCTTGCTGAAGTTCTCTGTTCTGTATCTGGTAGG 2081 GCACCGGGTCGAGTGCTTCAGAATCCTCATTTCTAATATATTCTACTATTAGAATATACTCTGGATTAGAAATACATTAG 2161 AAATGTATTCTTACTGAGTTAGAAAACGCATACTTTGTGTTAAAAAATACCATTGCTTTTACATTCTTGGTTTCTCATTT 2241 TTTTTCTTAGAAATCCACATTCGTTTTGCACGTATATAAACTTAACACAGTTTGGGAGTTGCAGGTTCCTCTTGATCATG 2321 ACTCAGTATCAACTTGACCTTTGGCACCATGGGCCCTTTAACTTGGTAGTCACGTTGACCCATGTTTCAGGTTGTAGAAA 2401 TGCCCAGTAGTACTTACTCATTATTTTAACATTCCAGAGGCTTTGCAGTTGTTTGTTGCTGTTTTGGTGATGACCACTAC 2481 ATCTTCGCCATTCTCTTCCTTCAAATGGCCATGGTGTGTTTGCTGACCGTCCCTGCCCACGCCCCACCCCCAGACATGTG 2561 GCCTCAAGCGTGGTGGCTGCCCTGAGTTTGAGACATGGTAGTATAAGTTGCAGTGCTGTCTGCTGAAACAACACTCTAAA 2641 ACCAGGTTGTGGTCTGTAATATATCCTAATAAATTTTTTTGCTAAAAAGTAGTGTCTTTAAAATTTTATTAAGTTTTCTG 2721 GGAAATGGTGACTTTTATATCAGTTTACACCATTTCCAGTGTGTTTAAGTATTTCTTGGATTTTTACCAAAGTAATGAGC 2801 ATCATGACAACATTAATATCTAGGCAATAAAAAAGGTCAGAGTTAGCTATAAACATATATTTTAATAGTAGTTTTCCTAA 2881 TTATATAATCACTGTAGCGAATTTAAAACATTGAGTAATTTCTAAAGATGGAAGAGACTGGGAAGCAAAATAAAAAAATT 2961 ATCTGTAATTCTACCAAAGTTAACTTCTTCCAAGCTTGGCTTCAATGCACATTATATGTTATGACCTATTCTCTTCAATT 3041 AATGTATTGAGAATATTCCATTTTAATAAAAATTAATTTGACAGCATGAC Target sites
Provided by authors
Predicted by miRanda
DRVs
SNPs
DRVs & SNPs
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miRNA-target interactions (Predicted by miRanda) |
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Experimental Support 1 for Functional miRNA-Target Interaction | |||||||
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miRNA:Target | ---- | ||||||
Validation Method |
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Conditions | CD4+ T cells (C57BL/6) | ||||||
Disease | MIMAT0004840 | ||||||
Location of target site | 3'UTR | ||||||
Tools used in this research | TargetScan , miRTarCLIP , Piranha | ||||||
Original Description (Extracted from the article) |
...
"HITS-CLIP data was present in GSM1013593. RNA binding protein: AGO2. Condition:CD4+ T cells
... - Loeb GB; Khan AA; Canner D; Hiatt JB; et al., 2012, Molecular cell. |
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miRNA-target interactions (Provided by authors) |
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Article |
- Loeb GB; Khan AA; Canner D; Hiatt JB; et al. - Molecular cell, 2012
MicroRNAs (miRNAs) are essential components of gene regulation, but identification of miRNA targets remains a major challenge. Most target prediction and discovery relies on perfect complementarity of the miRNA seed to the 3' untranslated region (UTR). However, it is unclear to what extent miRNAs target sites without seed matches. Here, we performed a transcriptome-wide identification of the endogenous targets of a single miRNA-miR-155-in a genetically controlled manner. We found that approximately 40% of miR-155-dependent Argonaute binding occurs at sites without perfect seed matches. The majority of these noncanonical sites feature extensive complementarity to the miRNA seed with one mismatch. These noncanonical sites confer regulation of gene expression, albeit less potently than canonical sites. Thus, noncanonical miRNA binding sites are widespread, often contain seed-like motifs, and can regulate gene expression, generating a continuum of targeting and regulation.
LinkOut: [PMID: 23142080]
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CLIP-seq Support 1 for dataset GSM1013593 | |
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Method / RBP | HITS-CLIP / AGO2 |
Cell line / Condition | CD4+ T cells (C57BL/6) / CD4+ T cells, WT, biological rep7 |
Location of target site | NM_028148 | 3UTR | AAAGUAGUGUCUUUA |
Tools used in this analysis | TargetScan, miRTarCLIP, and Piranha |
Article / Accession Series | PMID: 23142080 / GSE41285 |
CLIP-seq Viewer | Link |
101 mmu-miR-743b-3p Target Genes:
Functional analysis:
ID![]() |
Target | Description | Validation methods |
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Strong evidence | Less strong evidence | |||||||||||
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MIRT577961 | Pm20d2 | peptidase M20 domain containing 2 | ![]() |
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2 | 2 | ||||||
MIRT578387 | Klra2 | killer cell lectin-like receptor, subfamily A, member 2 | ![]() |
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2 | 6 | ||||||
MIRT579831 | Zfhx3 | zinc finger homeobox 3 | ![]() |
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2 | 8 | ||||||
MIRT580616 | Syp | synaptophysin | ![]() |
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2 | 2 | ||||||
MIRT580731 | Srrm4 | serine/arginine repetitive matrix 4 | ![]() |
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2 | 2 | ||||||
MIRT581440 | Rasa2 | RAS p21 protein activator 2 | ![]() |
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2 | 2 | ||||||
MIRT582031 | Pappa | pregnancy-associated plasma protein A | ![]() |
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2 | 2 | ||||||
MIRT582678 | Lin28b | lin-28 homolog B (C. elegans) | ![]() |
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2 | 8 | ||||||
MIRT582831 | Itih5 | inter-alpha (globulin) inhibitor H5 | ![]() |
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2 | 2 | ||||||
MIRT583084 | Hlcs | holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase) | ![]() |
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2 | 8 | ||||||
MIRT583879 | Dusp18 | dual specificity phosphatase 18 | ![]() |
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2 | 6 | ||||||
MIRT583900 | Dstyk | dual serine/threonine and tyrosine protein kinase | ![]() |
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2 | 4 | ||||||
MIRT585980 | Sfxn4 | sideroflexin 4 | ![]() |
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2 | 4 | ||||||
MIRT590345 | Cntn2 | contactin 2 | ![]() |
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2 | 6 | ||||||
MIRT591765 | Ppm1f | protein phosphatase 1F (PP2C domain containing) | ![]() |
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2 | 4 | ||||||
MIRT592938 | Astn2 | astrotactin 2 | ![]() |
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2 | 2 | ||||||
MIRT593579 | Zfp709 | zinc finger protein 709 | ![]() |
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2 | 2 | ||||||
MIRT593675 | Slc5a3 | solute carrier family 5 (inositol transporters), member 3 | ![]() |
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2 | 2 | ||||||
MIRT593750 | Peg10 | paternally expressed 10 | ![]() |
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2 | 2 | ||||||
MIRT593771 | Nmnat3 | nicotinamide nucleotide adenylyltransferase 3 | ![]() |
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2 | 2 | ||||||
MIRT593825 | Krit1 | KRIT1, ankyrin repeat containing | ![]() |
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2 | 2 | ||||||
MIRT593859 | Gm5460 | predicted gene 5460 | ![]() |
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2 | 2 | ||||||
MIRT593871 | Galnt10 | UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 | ![]() |
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2 | 2 | ||||||
MIRT593891 | Elovl5 | ELOVL family member 5, elongation of long chain fatty acids (yeast) | ![]() |
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2 | 2 | ||||||
MIRT593935 | Cxcl3 | chemokine (C-X-C motif) ligand 3 | ![]() |
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2 | 2 | ||||||
MIRT593937 | Cttnbp2nl | CTTNBP2 N-terminal like | ![]() |
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2 | 2 | ||||||
MIRT594001 | Aptx | aprataxin | ![]() |
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2 | 2 | ||||||
MIRT594019 | Tmem241 | transmembrane protein 241 | ![]() |
1 | 1 | |||||||
MIRT594730 | Zfp931 | zinc finger protein 931 | ![]() |
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2 | 2 | ||||||
MIRT594766 | Tmlhe | trimethyllysine hydroxylase, epsilon | ![]() |
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2 | 2 | ||||||
MIRT594836 | Opa3 | optic atrophy 3 | ![]() |
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2 | 2 | ||||||
MIRT594873 | Magt1 | magnesium transporter 1 | ![]() |
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2 | 2 | ||||||
MIRT594927 | Gm14326 | predicted gene 14326 | ![]() |
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2 | 2 | ||||||
MIRT594941 | Fosl2 | fos-like antigen 2 | ![]() |
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2 | 2 | ||||||
MIRT594980 | Eda2r | ectodysplasin A2 receptor | ![]() |
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2 | 2 | ||||||
MIRT595014 | Cpd | carboxypeptidase D | ![]() |
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2 | 2 | ||||||
MIRT595076 | Yae1d1 | Yae1 domain containing 1 | ![]() |
1 | 1 | |||||||
MIRT595132 | Lrrc4c | leucine rich repeat containing 4C | ![]() |
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2 | 2 | ||||||
MIRT595148 | Epha7 | Eph receptor A7 | ![]() |
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2 | 2 | ||||||
MIRT595169 | Zpbp | zona pellucida binding protein | ![]() |
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2 | 2 | ||||||
MIRT595180 | Tsn | translin | ![]() |
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2 | 2 | ||||||
MIRT595185 | Trim25 | tripartite motif-containing 25 | ![]() |
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2 | 2 | ||||||
MIRT595187 | Top2a | topoisomerase (DNA) II alpha | ![]() |
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2 | 2 | ||||||
MIRT595193 | Tmtc3 | transmembrane and tetratricopeptide repeat containing 3 | ![]() |
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2 | 2 | ||||||
MIRT595199 | Tbc1d2b | TBC1 domain family, member 2B | ![]() |
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2 | 2 | ||||||
MIRT595204 | St6gal1 | beta galactoside alpha 2,6 sialyltransferase 1 | ![]() |
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2 | 2 | ||||||
MIRT595210 | Snx27 | sorting nexin family member 27 | ![]() |
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2 | 2 | ||||||
MIRT595226 | Serinc1 | serine incorporator 1 | ![]() |
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2 | 2 | ||||||
MIRT595229 | Sema4d | sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D | ![]() |
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2 | 2 | ||||||
MIRT595232 | Sec24a | Sec24 related gene family, member A (S. cerevisiae) | ![]() |
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2 | 2 | ||||||
MIRT595235 | Scn3a | sodium channel, voltage-gated, type III, alpha | ![]() |
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2 | 2 | ||||||
MIRT595242 | Rc3h1 | RING CCCH (C3H) domains 1 | ![]() |
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2 | 2 | ||||||
MIRT595255 | Ppm1k | protein phosphatase 1K (PP2C domain containing) | ![]() |
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2 | 2 | ||||||
MIRT595259 | Plxna4 | plexin A4 | ![]() |
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2 | 2 | ||||||
MIRT595264 | Phf3 | PHD finger protein 3 | ![]() |
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2 | 2 | ||||||
MIRT595271 | Nxph1 | neurexophilin 1 | ![]() |
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2 | 2 | ||||||
MIRT595273 | Npas3 | neuronal PAS domain protein 3 | ![]() |
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2 | 2 | ||||||
MIRT595298 | Kcnv1 | potassium channel, subfamily V, member 1 | ![]() |
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2 | 2 | ||||||
MIRT595317 | Gna14 | guanine nucleotide binding protein, alpha 14 | ![]() |
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2 | 2 | ||||||
MIRT595321 | Gm10318 | predicted gene 10318 | ![]() |
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2 | 2 | ||||||
MIRT595328 | Galnt4 | UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4 | ![]() |
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2 | 2 | ||||||
MIRT595347 | Frem2 | Fras1 related extracellular matrix protein 2 | ![]() |
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2 | 2 | ||||||
MIRT595375 | Epb4.1l4a | erythrocyte membrane protein band 4.1 like 4a | ![]() |
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2 | 2 | ||||||
MIRT595380 | Dusp11 | dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) | ![]() |
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2 | 2 | ||||||
MIRT595383 | Dek | DEK oncogene (DNA binding) | ![]() |
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2 | 2 | ||||||
MIRT595385 | Dcun1d1 | DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae) | ![]() |
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2 | 2 | ||||||
MIRT595391 | Cetn3 | centrin 3 | ![]() |
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2 | 2 | ||||||
MIRT595394 | Cd8a | CD8 antigen, alpha chain | ![]() |
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2 | 2 | ||||||
MIRT595398 | Asprv1 | aspartic peptidase, retroviral-like 1 | ![]() |
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2 | 2 | ||||||
MIRT595403 | Arid2 | AT rich interactive domain 2 (ARID, RFX-like) | ![]() |
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2 | 2 | ||||||
MIRT595414 | Ankrd16 | ankyrin repeat domain 16 | ![]() |
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2 | 2 | ||||||
MIRT595416 | Anapc11 | anaphase promoting complex subunit 11 | ![]() |
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2 | 2 | ||||||
MIRT595421 | Akna | AT-hook transcription factor | ![]() |
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2 | 2 | ||||||
MIRT595438 | 9930013L23Rik | cell migration inducing protein, hyaluronan binding | ![]() |
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2 | 2 | ||||||
MIRT595441 | 9030617O03Rik | D-glutamate cyclase | ![]() |
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2 | 2 | ||||||
MIRT595459 | Zswim6 | zinc finger SWIM-type containing 6 | ![]() |
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2 | 2 | ||||||
MIRT595465 | Tspan13 | tetraspanin 13 | ![]() |
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2 | 2 | ||||||
MIRT595467 | Tmem41b | transmembrane protein 41B | ![]() |
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2 | 2 | ||||||
MIRT595472 | Sv2b | synaptic vesicle glycoprotein 2 b | ![]() |
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2 | 2 | ||||||
MIRT595475 | Sgk3 | serum/glucocorticoid regulated kinase 3 | ![]() |
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2 | 2 | ||||||
MIRT595480 | Scaf11 | SR-related CTD-associated factor 11 | ![]() |
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2 | 2 | ||||||
MIRT595485 | Phox2b | paired-like homeobox 2b | ![]() |
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2 | 2 | ||||||
MIRT595490 | Pgp | phosphoglycolate phosphatase | ![]() |
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2 | 2 | ||||||
MIRT595494 | Nr1d2 | nuclear receptor subfamily 1, group D, member 2 | ![]() |
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2 | 2 | ||||||
MIRT595511 | Lrig1 | leucine-rich repeats and immunoglobulin-like domains 1 | ![]() |
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2 | 2 | ||||||
MIRT595524 | Grm2 | glutamate receptor, metabotropic 2 | ![]() |
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2 | 2 | ||||||
MIRT595528 | Foxn3 | forkhead box N3 | ![]() |
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2 | 2 | ||||||
MIRT595536 | Fign | fidgetin | ![]() |
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2 | 2 | ||||||
MIRT595546 | Celf2 | CUGBP, Elav-like family member 2 | ![]() |
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2 | 2 | ||||||
MIRT595553 | Cd28 | CD28 antigen | ![]() |
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2 | 2 | ||||||
MIRT595840 | Sumf1 | sulfatase modifying factor 1 | ![]() |
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2 | 2 | ||||||
MIRT595953 | Rab6a | RAB6A, member RAS oncogene family | ![]() |
1 | 1 | |||||||
MIRT598445 | Lix1 | limb and CNS expressed 1 | ![]() |
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2 | 2 | ||||||
MIRT600750 | Iws1 | IWS1, SUPT6 interacting protein | ![]() |
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2 | 2 | ||||||
MIRT601150 | Bach2 | BTB and CNC homology, basic leucine zipper transcription factor 2 | ![]() |
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2 | 2 | ||||||
MIRT602248 | Grm1 | glutamate receptor, metabotropic 1 | ![]() |
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2 | 2 | ||||||
MIRT603333 | Slc35d2 | solute carrier family 35, member D2 | ![]() |
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2 | 2 | ||||||
MIRT603399 | Serpina1a | serine (or cysteine) peptidase inhibitor, clade A, member 1A | ![]() |
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2 | 2 | ||||||
MIRT604755 | Rad51d | RAD51 paralog D | ![]() |
1 | 1 | |||||||
MIRT605865 | Atpbd4 | diphthamine biosynthesis 6 | ![]() |
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2 | 2 | ||||||
MIRT606713 | 0610030E20Rik | RIKEN cDNA 0610030E20 gene | ![]() |
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2 | 2 |
miRNA-Drug Associations | |||||||||||||||||||||||||||
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