miRTarBase - #MIRT595778


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pre-miRNA Information
pre-miRNA mmu-mir-664   
Genomic Coordinates chr1: 185242975 - 185243043
Synonyms mmu-mir-664, Mir664
Description Mus musculus miR-664 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA mmu-miR-664-3p
Sequence 38| UAUUCAUUUACUCCCCAGCCUA |59
Evidence Experimental
Experiments Illumina
Putative Targets

Gene Information
Gene Symbol Mc1r   
Synonyms Mcr1, Mshra, Tob, e
Description melanocortin 1 receptor
Transcript NM_008559   
Expression
Putative miRNA Targets on Mc1r
3'UTR of Mc1r
(miRNA target sites are highlighted)		 
>Mc1r|NM_008559|3'UTR
   1 TCAGAGGGCGCTGGGCAGAGGGTGACAGTGATATCCAGTGGCCTGCATCCTGTGAGACCACAGGTACTCATCCCTTCCTG
  81 ATCTCCATTTGTCTAAGGGTCGACAGGATGAGCTTTAAAATAGAAACCCAGAGTGCCTGGGGCCAGGAGAAAGGGTAACT
 161 GTGACTGCAGGGCTCACCCAGGGCAGCTACGGGAAGTGGAGGAGACAGGGATGGGAACTCTAGCCCTGAGCAAGGGTCAG
 241 ACCACAGGCTCCTGAAGAGCTTCACCTCTCCCCACCTACAAGGCAACTCCTGCTCAGCCCTTCAGCTCATTCAGCCTGGG
 321 CTCTCCTGCTGGGACAGACATGAAGTCTCTAAGTTAAAAGAATGACAGACAAGCCGGGCGGTGGTGGCGCATGCCTTTAA
 401 TTCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTTCAGAGTGAGTTCCAGTGACGG
 481 CCAGGGCTATACAGAGAAACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGACAAACAAGAGCT
 561 AAGGGGGAGCAACTACTCTTGGTGGAAGCTTCTGATAAGAGGATTTGTGGCCATGAAAACCCAGCCATAGCCATGCAGTA
 641 GGCAGCTTAAGGAAGTGAGACCCTTCCTCAGCACATGGAGCAGAATTGTAGAATGTGCATCTTGCAGGAGGGGCCTACCC
 721 ATTTGCACAAGCGGTGTGGGACTGACCTAAAAATGGCTCCTGGGAATCCCAAGAGGTGGGCACCCAACTGCTCACACCAG
 801 CAGGCTACTCTGTCAAGTGCCTCCTCCACCAGCTGCAGGGGAGGCTGTTGGCTTATCACTGACCACAGCCTGTGTGGCTC
 881 TGAGCCAGGAAGCAGTTGAAATGCTAAGGTCAGAGGGAGGGAGCCTCCTTGCCATCTTCCCTAGCTCTCTCCAGAAGCTG
 961 AGTGAAGTTTGGGTGAGAGGACAGGGAGAGTGGTCACATTAGGGAGATGGGAGTCTCAGAAGCCACAGCTAGCTGCCTGC
1041 CTGATTTAGGAAACCACGGTCCCGTCTTGGCTTCCTCTATGACTACAAACTTCAGATCAGAGCAAGCAGCGGCAGAAAAA
1121 GTTTCCTCGTGCCTCTATGGTGACAAGAATCCCTTTGTTCAGGCTCCTTCTGGTTCATCCATACACTGTAGCAGGACCGT
1201 AGCATCTCAGCCCCTGATATGACACATCCGTAACCTTGGCCAGAGCCTGTCCCTTTCCTGCCCCCACCCCACCCCCCATG
1281 TGTAGGACTTTCAACCTACTTTGAGCTCTCCTGAGAAGCCCAGGGGTGGAGAGTCCCTGAGGCACACGTAGGGTGGACCA
1361 GGACCAGGGGCTGAGGTCTGTTTCTATGGGACACTGCCCTTCTGGGAGGAGGTGGGGTGGTCTCAGTGCTCTGTCAGATT
1441 TGGGAATTAGACAAGACCTTTCAGGCGTATCTGAGTCCCAGGAGAGTAGCACCTGGGGTGAACTAAGAAGCTTGCACATC
1521 CCTGAGCCTTTCTGCTGCTACAACCTGGGATTCCTGCAGCAGAGTCTATCTTGAGTCCCCACTGGTACTGAACACTTCTT
1601 TGTCCTCCTCCTTGGGGTGGCCTCTCAGTCTGGAGTGAGATGCCCTCAACCATCAAGTCAGGAAATGGCACCAGGCCAGG
1681 ACCTAGCCACACTATCAGCTCCAGCCCTGCTGGACTGAGATTGGAAGCTGGTTCCCGGCAGGGCCAGCCTTTGCTGGAAG
1761 ACAGGACCATGAGTCAGCCTTTAGCCTGACACCATAGCTCCCTGGGGACACAGAGAGCTCTGGCCTGATGTCATCTGTCA
1841 GAGAAGCATCCCAGGCCTCTGGATGCTTCTAAGCATCTTCTCTGTCCAGACAAGGAGACAGAGACAGATGCTCACCCAAT
1921 ACTTCTTGAGCCAGGCCAGCTGGAACCACAGAAAGCCACATCATGGACACATTGTGGGGGAGGGGCATCTCTTGAGAACA
2001 AAAGACCCATTTCTAAACTCGGCTAACTTGGATGCTTACCCTCAGAGAAAGTTGTATGCGCAGCCGCTCTATCCAGCGTG
2081 CACCCGTGCGTGCAAACTGGACGAAGGCATCTGCAGGTGTTTTTAAGCTTTTTAGCGGCTCTTGTGAAATGAATGTTTGT
2161 GGACCATTGAAGTGTGGTACTATTGTCTCAGATTCTTCCCGAAGAATTTTCTGTCACTGAAATATCAAATAGTCCTCATA
2241 AGGTGTCACTGGTCCTAGATGAATATTAAATCAGTGTTGTCTGTGAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' auCCGACCCCUCAUUUACUUAu 5'
            ||||   | | |||||||| 
Target 5' gcGGCTCTTGTG-AAATGAATg 3'
 2135 - 2155 155.00 -10.42
2 
miRNA  3' auccGACCCCUCAUUUACUUAu 5'
              || ||   ||:|||||| 
Target 5' gtcaCT-GGTCCTAGATGAATa 3'
 2245 - 2265 137.00 -13.20
3 
miRNA  3' aucCGACCC----CUCAU--UUACU-UAu 5'
             ||||||    |:||:  |:||| || 
Target 5' ggcGCTGGGCAGAGGGTGACAGTGATATc 3'
 7 - 35 115.00 -14.74
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions CD4+ T cells (C57BL/6)
Disease MIMAT0012774
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "HITS-CLIP data was present in GSM1013588. RNA binding protein: AGO2. Condition:CD4+ T cells ...

- Loeb GB; Khan AA; Canner D; Hiatt JB; et al., 2012, Molecular cell.

Article - Loeb GB; Khan AA; Canner D; Hiatt JB; et al.
- Molecular cell, 2012
MicroRNAs (miRNAs) are essential components of gene regulation, but identification of miRNA targets remains a major challenge. Most target prediction and discovery relies on perfect complementarity of the miRNA seed to the 3' untranslated region (UTR). However, it is unclear to what extent miRNAs target sites without seed matches. Here, we performed a transcriptome-wide identification of the endogenous targets of a single miRNA-miR-155-in a genetically controlled manner. We found that approximately 40% of miR-155-dependent Argonaute binding occurs at sites without perfect seed matches. The majority of these noncanonical sites feature extensive complementarity to the miRNA seed with one mismatch. These noncanonical sites confer regulation of gene expression, albeit less potently than canonical sites. Thus, noncanonical miRNA binding sites are widespread, often contain seed-like motifs, and can regulate gene expression, generating a continuum of targeting and regulation.
LinkOut: [PMID: 23142080]
34 mmu-miR-664-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT577936 Prl5a1 prolactin family 5, subfamily a, member 1 1 1
MIRT578554 Hopx HOP homeobox 1 1
MIRT579006 Cyp19a1 cytochrome P450, family 19, subfamily a, polypeptide 1 1 1
MIRT579669 1200011I18Rik GPALPP motifs containing 1 1 1
MIRT580267 Trim12c tripartite motif-containing 12C 1 1
MIRT580632 Sycp2 synaptonemal complex protein 2 1 1
MIRT580981 Slc12a2 solute carrier family 12, member 2 1 1
MIRT581678 Ppp1r3d protein phosphatase 1, regulatory subunit 3D 1 1
MIRT582092 Ogdh oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) 1 1
MIRT582126 Nr2c1 nuclear receptor subfamily 2, group C, member 1 1 1
MIRT583126 Heca hdc homolog, cell cycle regulator 1 1
MIRT583594 Fam78b family with sequence similarity 78, member B 1 1
MIRT583662 Fam160b2 family with sequence similarity 160, member B2 1 5
MIRT584399 Cdc27 cell division cycle 27 1 1
MIRT584815 Arid4b AT rich interactive domain 4B (RBP1-like) 1 1
MIRT585915 Slc16a9 solute carrier family 16 (monocarboxylic acid transporters), member 9 1 1
MIRT586057 Rnmt RNA (guanine-7-) methyltransferase 1 1
MIRT586080 Rgs4 regulator of G-protein signaling 4 1 1
MIRT587942 Atl2 atlastin GTPase 2 1 2
MIRT590595 Atp2a2 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 1 1
MIRT590735 Ado 2-aminoethanethiol (cysteamine) dioxygenase 1 1
MIRT591492 Aqp3 aquaporin 3 1 2
MIRT594084 Scoc short coiled-coil protein 1 1
MIRT594733 Zfp62 zinc finger protein 62 1 1
MIRT595057 Aldh1l2 aldehyde dehydrogenase 1 family, member L2 1 1
MIRT595113 Rgs17 regulator of G-protein signaling 17 1 1
MIRT595239 Rhbdl1 rhomboid, veinlet-like 1 (Drosophila) 1 1
MIRT595762 Otud6b OTU domain containing 6B 1 1
MIRT595778 Mc1r melanocortin 1 receptor 1 1
MIRT596728 Wdr59 WD repeat domain 59 1 1
MIRT598239 Mlph melanophilin 1 1
MIRT600005 4930563E22Rik RIKEN cDNA 4930563E22 gene 1 1
MIRT602439 Emx2 empty spiracles homeobox 2 1 1
MIRT736865 Smad4 SMAD family member 4 4 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-664 Acarbose Approved 444254 Microarray diabetic rats cells 24260283 2014 up-regulated
miR-664 Sorafenib approved 216239 Quantitative real-time PCR hepatocellular carcinoma 21530512 2011 up-regulated
miR-664 Ginsenoside Rh2 NULL 119307 Microarray NSCLC cell line A549 23152132 2013 up-regulated

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