pre-miRNA Information | |
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pre-miRNA | mmu-mir-677 |
Genomic Coordinates | chr10: 128085286 - 128085363 |
Synonyms | Mirn677, mmu-mir-677, Mir677 |
Description | Mus musculus miR-677 stem-loop |
Comment | None |
RNA Secondary Structure | ![]() |
Mature miRNA Information | |
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Mature miRNA | mmu-miR-677-5p |
Sequence | 6| UUCAGUGAUGAUUAGCUUCUGA |27 |
Evidence | Experimental |
Experiments | MPSS |
Putative Targets |
Gene Information | |||||||||||||||||||||
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Gene Symbol | Gid4 | ||||||||||||||||||||
Synonyms | 4933439F18Rik | ||||||||||||||||||||
Description | GID complex subunit 4, VID24 homolog | ||||||||||||||||||||
Transcript | NM_025757 | ||||||||||||||||||||
Expression | |||||||||||||||||||||
Putative miRNA Targets on Gid4 | |||||||||||||||||||||
3'UTR of Gid4 (miRNA target sites are highlighted) |
>Gid4|NM_025757|3'UTR 1 CAGAGGTTCAGAACAGTGGCCAAATAAAACTGAACTTGGCAACAAAGAGCTTTGCGAGGAAATTATGTACCTGCCAGAAC 81 CAGGAGAGGTGTGTTCCTGTTTGTTCACGAGCAGACTTCATCAGAAAGCATGAATGTTAACCTACAGGATCCAAGGAGCA 161 TGGCCAACCTGCAGGCAGGCAGAGGGAGCTGTTCACCTCCCACCCTCCTTCCTCTCAGTGGCATTGTGGTCACCATCTGT 241 TTCTGAACAACCTTAAATGCACTTTCCTTCCTGCACAGCTAACTTCTGCATCACTGAAATGCCATCTTTCCTCGGCCTGC 321 CTCTAGCCAAGTGGAAGGTCAGCTCCTGGGTCACCTTAGCCTTGGTGCTCAGTGGTCTCCACCCAGGCCCTACTCCTTCC 401 TCAGTTGCTTGTTTGGTAGCCCAAGGAAAGGGAGAGCCCAGCATCTTGTGCCCCAGAGCTCTATGTGAGTTGCCTGGGCC 481 CAGCATATACCACCAATGAGATGAGATGGGGTCCCTGGTGGGCCTCATTGACCTTTGATTCCAGTTGATGTCTTGTAGGG 561 CCCTGTGTGTTAACAATGCAAGACTAGCACATGGCTGTCGGGTTTTCTGGGCCTGCTGTTGGGGATCACTAAATTTAAGG 641 CTTCCAGATCCCTGGTAGGAGTAGATCCCAAACTGCTTTCTCAGTACATTTGCTCCAAACTTCTGAACTTGAGGGCAATA 721 CTAAATAAAAGAGTTTTTTATTACAAAATTATTATTTTTATGGTACCTTTAACAAGGACCCTATGGCAAATGCACAATTA 801 TTCCGAATTACATTTATCGTTTTCACATTGAAAACAGCAAATGTTGACGTAGTGACTTTTATATCTATGTCTATATGTAT 881 ATTTAATCAACCAGCAGTTTTGAAACAGGTCATCCTGGTACAGAAGTTTTGCAGCATTGCTTAAATCACAGTGCTAAACA 961 CAGGAACTGTTTCCGGGCCGGCTGAGCATTTGCGCCTCCTCCTTTTGCTACTCAAAACATCAGTGTGTCATGACAACCTT 1041 TTCCAAAGGCAGAGGGGGCCCCCATTCTCCGGAAAGGATGACTGAAATGTTGTCATGGCGTGGGCAGGAAGAAATGCACT 1121 CAAATAACTCGAGGCTCATGTGCCAAAGTGTGAGAGAGGGGAGTGGTTTGGTTTGGTTTGGTTTGGTTTTTCTAAATGTT 1201 TAAAAAGCTTAATAGATTGGCATCAGTTGTAGTCCACAATATTGTCAGGACTTTGGGGAATTCTGGTGGTTTACAGGTCC 1281 AAACACAAGGGGAAAAGCTTTAAAATAAATACAGCATCAGGGCTGGGAGTGCAGCTGACCAAGCACTAGCTTGTCACATA 1361 TGAGGAAGGACCTGGCTTCCATTTCCAGTGCTGGAAAAAGGGAACACCAAGGGGTAGCAGGTTGGCTGCTGTTGTATTGT 1441 GCTGTGTGTTACTAATACTGAATATCTGGGAACCTTAAGAGAGCAGAAGTGGGGAAAGAAACCAGCAGGTACTTGGCAAT 1521 ATCCATAGCCCCAAAACTTACCCAGTCAGTAAAGCTGGGGCTCAGAAACCATAACAATACATCATCCCAAGACTTAGGTA 1601 GAAGAAAAGAATCCACATCCATCGCTAGGGCTGAATCAGTGGTTCCTTACCCTTGAGAAGCAGCCTGGGTACGGCAGTGC 1681 ACCTCGAGGCCCAGCTGCTCAGAAGCCTGAGCCCAGGAGAAAGGGTCAGTCTAAGGTGAACCTAAACTTCATCTGACATC 1761 AAAACTCAACTGAATATGAGATGGCCGGCTCTGGTCAGAAGCACCTGGCTTACACCACAGGCCACCATCGCTTCACTTAA 1841 GCTGAGGGGCAGCACTGGAGAGTGAAGGAGGCAGAAAGACTGACTGCTGGCTTTTCCCTGCAGCACCTGCTCCTCTGGCT 1921 TTCCACCATGCTATTGAACCATTGTGTGCTGGGCAGGTATCATTCAGCAGTGGATGGAGTCACCCTGAAGCTAGGGCTCG 2001 TGTGTAGCTCTAGTAGCACGTCAGTGAACAGCCTCTCCTCTAAACTGGGCAGGCCAGGTCGGAGCATAGGGGTTCCCCCT 2081 ACACCCCCCTTTTGTTCCTTTGATCTCTTTGTCTTCAGGGTCTCACTTTGTAACTCTAGCTGGCCTGGAGCTCACTTTGT 2161 AGATCAGGCTGACCTTGAACTCACTGAGATCCACCTGACTACTCAGAGCGAGTACTAGGACTAAAGGTGTGAGCCACCAC 2241 ACCCTGCTTTTTTTTTTTTTTTTTTTCTTAGCTAGGGAAGTGTTCCAGCTCTACTTAGAAAGATGAGGGAAGGATGCCTT 2321 TAGCAGACAGACTTCAGACCTACCTGAAGACTTGCTGCTTAGAAGTCTGCCCCTGAACACTGGGCAGGAATAAACATGTT 2401 CCACTTCTTAGTAACTCCTAGCTGGTGGACAGTGACTTCTTTTCCTTTTCTGTCCCTGGAGGACCTCTGGGACTTGTCTC 2481 CATTGGTAGCTCTTTAACCAGCTGCTCAGTGGCTTGCATGCCTCTGGTCCTGTGTGCAATATCTTTGCCTGGCACTTGTA 2561 TCTAACATTGAAAAATAGGTGCAGACTGCAAATGTCCTACTGTTCTCTACTCCAACGAGCCAACCCCCAGGCAGGGACTA 2641 GAGGTCTGGCTGCTCTTCTCTTACCCTCCACTCAGAAGGCTCCACTGCTGTGGCCAGCTGTGGCCCTCTCGTTCCCTGCT 2721 TTACCAGTCTACCCACCTATCTCCTTTAAGATGGCCTAGCATGTCAGCTGCAGTCCAAAAGTAAGTAGACAAAGCCTCAT 2801 GTTAAGTAGACAGTCAGGGTGGACTGGCCCTGTTAGCAGTGTTGGAGTCAGATTCCAGTGGAACAAAGGGGTTTCTCAAT 2881 GTCTTTTGCTTTCAGAAGCAGGGAATTCATATTCCCTTTAAGGCCTTGAATGGATTTTTTTTCCTCATAAAATAGTCACT 2961 GATAAGCTAATTTTTAAAAAGAAATGCCATTACGTATGTTACATTGTGGTTTAAAATTACTAACAAGTTCTGGGAAAGAA 3041 AATACTTGATTTTGAATCTTAAATGTTTTTTAAAAATTAGATTTGAATGGGCGCAAAGTACAAATATTTTGTTTCTTTAT 3121 GGAAGACCTGTGGAAAGGGTTTGAAGATTTGCAATGGGAGAATTATTTTGCAGAGCTATCAATGTCTAAATAATTTTTGA 3201 AAAAAAAAAACCAATAAAGGTATTTAAGCAGTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA Target sites
Provided by authors
Predicted by miRanda
DRVs
SNPs
DRVs & SNPs
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miRNA-target interactions (Predicted by miRanda) |
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Experimental Support 1 for Functional miRNA-Target Interaction | |||||||
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miRNA:Target | ---- | ||||||
Validation Method |
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Conditions | CD4+ T cells (C57BL/6) | ||||||
Disease | MIMAT0003451 | ||||||
Location of target site | 3'UTR | ||||||
Tools used in this research | TargetScan , miRTarCLIP , Piranha | ||||||
Original Description (Extracted from the article) |
...
"HITS-CLIP data was present in GSM1013588. RNA binding protein: AGO2. Condition:CD4+ T cells
... - Loeb GB; Khan AA; Canner D; Hiatt JB; et al., 2012, Molecular cell. |
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miRNA-target interactions (Provided by authors) |
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Article |
- Loeb GB; Khan AA; Canner D; Hiatt JB; et al. - Molecular cell, 2012
MicroRNAs (miRNAs) are essential components of gene regulation, but identification of miRNA targets remains a major challenge. Most target prediction and discovery relies on perfect complementarity of the miRNA seed to the 3' untranslated region (UTR). However, it is unclear to what extent miRNAs target sites without seed matches. Here, we performed a transcriptome-wide identification of the endogenous targets of a single miRNA-miR-155-in a genetically controlled manner. We found that approximately 40% of miR-155-dependent Argonaute binding occurs at sites without perfect seed matches. The majority of these noncanonical sites feature extensive complementarity to the miRNA seed with one mismatch. These noncanonical sites confer regulation of gene expression, albeit less potently than canonical sites. Thus, noncanonical miRNA binding sites are widespread, often contain seed-like motifs, and can regulate gene expression, generating a continuum of targeting and regulation.
LinkOut: [PMID: 23142080]
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44 mmu-miR-677-5p Target Genes:
Functional analysis:
ID![]() |
Target | Description | Validation methods |
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Strong evidence | Less strong evidence | |||||||||||
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MIRT580133 | Ubap2l | ubiquitin-associated protein 2-like | ![]() |
1 | 1 | |||||||
MIRT582833 | Itgb3 | integrin beta 3 | ![]() |
1 | 4 | |||||||
MIRT583171 | Grik3 | glutamate receptor, ionotropic, kainate 3 | ![]() |
1 | 3 | |||||||
MIRT583782 | Elovl7 | ELOVL family member 7, elongation of long chain fatty acids (yeast) | ![]() |
1 | 2 | |||||||
MIRT585951 | Sin3a | transcriptional regulator, SIN3A (yeast) | ![]() |
1 | 1 | |||||||
MIRT589768 | Iws1 | IWS1, SUPT6 interacting protein | ![]() |
1 | 1 | |||||||
MIRT591164 | Mup19 | major urinary protein 19 | ![]() |
1 | 1 | |||||||
MIRT591170 | Mup12 | major urinary protein 12 | ![]() |
1 | 1 | |||||||
MIRT591176 | Mup10 | major urinary protein 10 | ![]() |
1 | 1 | |||||||
MIRT591807 | Mup14 | major urinary protein 14 | ![]() |
1 | 1 | |||||||
MIRT592567 | Mup17 | major urinary protein 17 | ![]() |
1 | 1 | |||||||
MIRT592608 | Mup11 | major urinary protein 11 | ![]() |
1 | 1 | |||||||
MIRT593180 | Clasp1 | CLIP associating protein 1 | ![]() |
1 | 1 | |||||||
MIRT594028 | 5430427O19Rik | RIKEN cDNA 5430427O19 gene | ![]() |
1 | 1 | |||||||
MIRT595083 | Zfp516 | zinc finger protein 516 | ![]() |
1 | 1 | |||||||
MIRT595535 | Fign | fidgetin | ![]() |
1 | 1 | |||||||
MIRT595555 | Ubr3 | ubiquitin protein ligase E3 component n-recognin 3 | ![]() |
1 | 1 | |||||||
MIRT595557 | Tcte1 | t-complex-associated testis expressed 1 | ![]() |
1 | 1 | |||||||
MIRT595562 | Sptbn1 | spectrin beta, non-erythrocytic 1 | ![]() |
1 | 1 | |||||||
MIRT595569 | Nrsn1 | neurensin 1 | ![]() |
1 | 1 | |||||||
MIRT595571 | Mtf1 | metal response element binding transcription factor 1 | ![]() |
1 | 1 | |||||||
MIRT595579 | Josd1 | Josephin domain containing 1 | ![]() |
1 | 1 | |||||||
MIRT595580 | Fam101b | refilin B | ![]() |
1 | 1 | |||||||
MIRT595587 | 4930444A02Rik | protein-O-mannose kinase | ![]() |
1 | 1 | |||||||
MIRT595593 | Ago1 | argonaute RISC catalytic subunit 1 | ![]() |
1 | 1 | |||||||
MIRT595602 | Nbl1 | neuroblastoma, suppression of tumorigenicity 1 | ![]() |
1 | 1 | |||||||
MIRT595604 | March8 | membrane-associated ring finger (C3HC4) 8 | ![]() |
1 | 1 | |||||||
MIRT595625 | Nol7 | nucleolar protein 7 | ![]() |
1 | 1 | |||||||
MIRT595629 | Gnptg | N-acetylglucosamine-1-phosphotransferase, gamma subunit | ![]() |
1 | 1 | |||||||
MIRT595633 | Ednra | endothelin receptor type A | ![]() |
1 | 1 | |||||||
MIRT595649 | B3galt5 | UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5 | ![]() |
1 | 1 | |||||||
MIRT595667 | Rxrb | retinoid X receptor beta | ![]() |
1 | 1 | |||||||
MIRT595743 | Ctdspl2 | CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 | ![]() |
1 | 1 | |||||||
MIRT595789 | Fignl2 | fidgetin-like 2 | ![]() |
1 | 1 | |||||||
MIRT595880 | Gid4 | GID complex subunit 4, VID24 homolog | ![]() |
1 | 1 | |||||||
MIRT595909 | Tapt1 | transmembrane anterior posterior transformation 1 | ![]() |
1 | 1 | |||||||
MIRT595919 | Trim9 | tripartite motif-containing 9 | ![]() |
1 | 1 | |||||||
MIRT595925 | Efr3a | EFR3 homolog A | ![]() |
1 | 1 | |||||||
MIRT595937 | Acmsd | amino carboxymuconate semialdehyde decarboxylase | ![]() |
1 | 1 | |||||||
MIRT595943 | B3gnt5 | UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 | ![]() |
1 | 1 | |||||||
MIRT596004 | Disp2 | dispatched RND tramsporter family member 2 | ![]() |
1 | 1 | |||||||
MIRT596008 | Ceacam1 | carcinoembryonic antigen-related cell adhesion molecule 1 | ![]() |
1 | 1 | |||||||
MIRT596167 | Ms4a15 | membrane-spanning 4-domains, subfamily A, member 15 | ![]() |
1 | 1 | |||||||
MIRT597273 | Slc25a33 | solute carrier family 25, member 33 | ![]() |
1 | 1 |