pre-miRNA Information | |
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pre-miRNA | mmu-mir-677 |
Genomic Coordinates | chr10: 128085286 - 128085363 |
Synonyms | Mirn677, mmu-mir-677, Mir677 |
Description | Mus musculus miR-677 stem-loop |
Comment | None |
RNA Secondary Structure | ![]() |
Mature miRNA Information | |
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Mature miRNA | mmu-miR-677-5p |
Sequence | 6| UUCAGUGAUGAUUAGCUUCUGA |27 |
Evidence | Experimental |
Experiments | MPSS |
Putative Targets |
Gene Information | |||||||||||||||||||||
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Gene Symbol | B3gnt5 | ||||||||||||||||||||
Synonyms | beta3GnT5 | ||||||||||||||||||||
Description | UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 | ||||||||||||||||||||
Transcript | NM_001159407 | ||||||||||||||||||||
Other Transcripts | NM_001159408 , NM_054052 | ||||||||||||||||||||
Expression | |||||||||||||||||||||
Putative miRNA Targets on B3gnt5 | |||||||||||||||||||||
3'UTR of B3gnt5 (miRNA target sites are highlighted) |
>B3gnt5|NM_001159407|3'UTR 1 TAGTACATGAATGCTGTACTGTGTTAAGTGTCACTGAGCCAAACTTGAATGGAAAATAATAATCTGTAAATGTTTCTCTC 81 TACCCTAAGTCAAATGAATTGAAAGCAAAGAGATTCATTTCAAAACCCAGTCAAACTGGTCAGTGTAACTCCAAATTAAA 161 CTGCAGCTTAATTTCATTTCAAGGAATTCATATTCTAAACGACTTAGATCATGAGCAAGGGTAAAGTAAGAATTTCAAGT 241 TCTCATTTGGTTCTACACATGTATTTAAGGTATGGAGAACACCTGAGAAGCCTTGATATCAAAATAATAGTTTGGGGAAG 321 ATACCTGAGAAATATATAATATAGCATTTCTAAAAAATTAATACCTCTTAGAACAAGCAATCCCAATTATCTTATTAAAG 401 AGTTCTAGGTAGAGGTGGAGGGAGGCAGGTGATGCAGAAGGAACGTGATGAAAGGTTCATCCGAATGAGGACATATGTGG 481 AAAATGTATATAATTTCTTATAGTTAAGTCGTTTAACATTGGCATTCCTACAGCCAGTTACCTAGGCAGTTCTGGAATCA 561 TTTAAGATATATTTGTTTCATTTTCTCAAATTTAATTTTTAGTGTAAAAACTTTAGAAAGTGGTCAGCTCTACCCTAATA 641 AAAACTATATGTACGCTTTCTCTAAAGTTATAAAACAAGAATAGTTCCTGGCCCCTGGAGGACCTTCTTTAAAGATAAAT 721 CACTATCAACTCCAATAAGCTTGTTTTAATTTAATGAATTATTCAATGGCTTTTAAAACACTAGATATTGGCCTCTGTTT 801 AAGGTAGTTGTTTGGATGCAGCTTACAATGAGGAGTATAATAACAGAAGAGACTTAAAGGAAAGATAGAACTAGGGGTAT 881 AGCTCAGCATCCAAAAGGGAAGACAAAGAAGCAATAAAAGTCTCTTTTCCTTGTAATTGTAACATCAGCTTGGAGTCCAG 961 ACCATGGCACTCAATACTCAAATGCCGCTTCCAATAAGGTCTTGTAGGACACAGATTTTGTTCCAAGTGAAGACTTTTAG 1041 CTTGAAAGTTTTTAATATAGTACCACGTCTAAAATAATCCATTATTTGACTCAATAGCTATCAGAGGTTATCTTTTAAAT 1121 ATTTCAAACATGGGAGCAAAATAAGAGTGCTAGAGAAACTGACCAAATGAGATTAGAAATGTTGGTAAATCTGCATGTTC 1201 TTTGTAATCAGAGGCTTGGCAGATCTAATAAATTAAATTACATTTATTTTACAAAATAGGATTAAAACATGTGGCTGGTA 1281 TGCAAACAGTGCACCAGCACAGAAAGGACTAAGGGGTATTCATCGATTAAGGACCTGTAATGCAGGTCAAAACACGATTT 1361 CAGCAAATGAAGATGGATGCTTAACAACCCTCAGACAGATGCATATAATAGGGAAAGTTTAGCTACTATTATTAGGGTGG 1441 TTTTGGAAACAATGCAAAAAAATCTAAAAATACACAACTAAATGATATCTGTGTTTTCACAGGTAGATTTTTTTTAAAAA 1521 AATGTTTACAGAAATCTTTGTGAAGTTTTTTATTATGAGATATGAAGCTTGTTTATCCTACTCGGGTAGTTTCCTACTAA 1601 TTTCAAGACTAGTGTTAAACATTCTAAGGTAGTTATCTTAGGGTAGATTCAAGGTTTTAGATGACTAACAGTTCAGATTT 1681 TCTGATCAATTTTTTAAACACTAGAGAATAAAAGTGTACTAGAGAATAAAAGCAGCTTCATAGTTAATTCTCACCAATTG 1761 GCCCTTTGCTAGCTGCTGGCTTTAGGTACACATAGGATAATATGTGTCCACGTTTCTACTTGGAACTGGTAAAAGTTGTC 1841 ACTGGCTGGAAAATGGTATCTCTCTCTTGTATACAAGATGGTCCATTGACACTGGTACTTTATGAAGCAGTTCTTTGTTT 1921 GTTTGATTGAGCTCTCTTGAACCTTGTTCATCTTTTAGTTTTTGCTTAGAATAGAATGGAACTGGTTTGAAGTTAAAGGA 2001 AATATTCATTTTGAAACTTGTTCATTTTGAAAGGAAATGCAAGTTTCAAAATGAAAAATAAAATGAAAAAGGAAATAAAT 2081 TATTGTCCCAGATGGTCACTTGAGTTTTAAAAAATGGCTGCACACAGTAAAACTGCTAAAAACAAAAACTTACCTCATTA 2161 TTGGTTTGCATCTTTTTTCAGCTACTAATTTTATACCAAAATGTTAAATATTTATATTGTTTGAGTTTCAATCTTGTATG 2241 GAAAAAAATAATTAGTAGGTCTAAAAATGCCATGCTTTCCAATAAAGAAGTTAAAAAAATCATCAGTAATGTGAATTTAA 2321 AATCCTGTGTGGGCATCATTCTGTGTATCGTCACCTGCTGTCTTATACCAGAAGAACCTGCACTACCCATCCATTGTCCT 2401 ATGTGTGCTCACCCTGCTGCTGTGCTCACTGGTGGGCTGTCATGGAGCTACTTAAGGAGCTATGCTGTGACTGTGGGAAA 2481 TGCTGTTTGTCCAGAATGCCATGACAAAAAGCTCTTGCAGTTTTAGTGTATTAAGATGCCATCTAAAGAGGTTAGACTCT 2561 ATTCATTAGCTGAATAAAAGAAGAACTTGG Target sites
Provided by authors
Predicted by miRanda
DRVs
SNPs
DRVs & SNPs
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miRNA-target interactions (Predicted by miRanda) |
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Experimental Support 1 for Functional miRNA-Target Interaction | |||||||
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miRNA:Target | ---- | ||||||
Validation Method |
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Conditions | CD4+ T cells (C57BL/6) | ||||||
Disease | MIMAT0003451 | ||||||
Location of target site | 3'UTR | ||||||
Tools used in this research | TargetScan , miRTarCLIP , Piranha | ||||||
Original Description (Extracted from the article) |
...
"HITS-CLIP data was present in GSM1013582. RNA binding protein: AGO2. Condition:CD4+ T cells
"HITS-CLIP data was present in GSM1013585. RNA binding protein: AGO2. Condition:CD4+ T cells
... - Loeb GB; Khan AA; Canner D; Hiatt JB; et al., 2012, Molecular cell. |
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miRNA-target interactions (Provided by authors) |
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Article |
- Loeb GB; Khan AA; Canner D; Hiatt JB; et al. - Molecular cell, 2012
MicroRNAs (miRNAs) are essential components of gene regulation, but identification of miRNA targets remains a major challenge. Most target prediction and discovery relies on perfect complementarity of the miRNA seed to the 3' untranslated region (UTR). However, it is unclear to what extent miRNAs target sites without seed matches. Here, we performed a transcriptome-wide identification of the endogenous targets of a single miRNA-miR-155-in a genetically controlled manner. We found that approximately 40% of miR-155-dependent Argonaute binding occurs at sites without perfect seed matches. The majority of these noncanonical sites feature extensive complementarity to the miRNA seed with one mismatch. These noncanonical sites confer regulation of gene expression, albeit less potently than canonical sites. Thus, noncanonical miRNA binding sites are widespread, often contain seed-like motifs, and can regulate gene expression, generating a continuum of targeting and regulation.
LinkOut: [PMID: 23142080]
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44 mmu-miR-677-5p Target Genes:
Functional analysis:
ID![]() |
Target | Description | Validation methods |
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Strong evidence | Less strong evidence | |||||||||||
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MIRT580133 | Ubap2l | ubiquitin-associated protein 2-like | ![]() |
1 | 1 | |||||||
MIRT582833 | Itgb3 | integrin beta 3 | ![]() |
1 | 4 | |||||||
MIRT583171 | Grik3 | glutamate receptor, ionotropic, kainate 3 | ![]() |
1 | 3 | |||||||
MIRT583782 | Elovl7 | ELOVL family member 7, elongation of long chain fatty acids (yeast) | ![]() |
1 | 2 | |||||||
MIRT585951 | Sin3a | transcriptional regulator, SIN3A (yeast) | ![]() |
1 | 1 | |||||||
MIRT589768 | Iws1 | IWS1, SUPT6 interacting protein | ![]() |
1 | 1 | |||||||
MIRT591164 | Mup19 | major urinary protein 19 | ![]() |
1 | 1 | |||||||
MIRT591170 | Mup12 | major urinary protein 12 | ![]() |
1 | 1 | |||||||
MIRT591176 | Mup10 | major urinary protein 10 | ![]() |
1 | 1 | |||||||
MIRT591807 | Mup14 | major urinary protein 14 | ![]() |
1 | 1 | |||||||
MIRT592567 | Mup17 | major urinary protein 17 | ![]() |
1 | 1 | |||||||
MIRT592608 | Mup11 | major urinary protein 11 | ![]() |
1 | 1 | |||||||
MIRT593180 | Clasp1 | CLIP associating protein 1 | ![]() |
1 | 1 | |||||||
MIRT594028 | 5430427O19Rik | RIKEN cDNA 5430427O19 gene | ![]() |
1 | 1 | |||||||
MIRT595083 | Zfp516 | zinc finger protein 516 | ![]() |
1 | 1 | |||||||
MIRT595535 | Fign | fidgetin | ![]() |
1 | 1 | |||||||
MIRT595555 | Ubr3 | ubiquitin protein ligase E3 component n-recognin 3 | ![]() |
1 | 1 | |||||||
MIRT595557 | Tcte1 | t-complex-associated testis expressed 1 | ![]() |
1 | 1 | |||||||
MIRT595562 | Sptbn1 | spectrin beta, non-erythrocytic 1 | ![]() |
1 | 1 | |||||||
MIRT595569 | Nrsn1 | neurensin 1 | ![]() |
1 | 1 | |||||||
MIRT595571 | Mtf1 | metal response element binding transcription factor 1 | ![]() |
1 | 1 | |||||||
MIRT595579 | Josd1 | Josephin domain containing 1 | ![]() |
1 | 1 | |||||||
MIRT595580 | Fam101b | refilin B | ![]() |
1 | 1 | |||||||
MIRT595587 | 4930444A02Rik | protein-O-mannose kinase | ![]() |
1 | 1 | |||||||
MIRT595593 | Ago1 | argonaute RISC catalytic subunit 1 | ![]() |
1 | 1 | |||||||
MIRT595602 | Nbl1 | neuroblastoma, suppression of tumorigenicity 1 | ![]() |
1 | 1 | |||||||
MIRT595604 | March8 | membrane-associated ring finger (C3HC4) 8 | ![]() |
1 | 1 | |||||||
MIRT595625 | Nol7 | nucleolar protein 7 | ![]() |
1 | 1 | |||||||
MIRT595629 | Gnptg | N-acetylglucosamine-1-phosphotransferase, gamma subunit | ![]() |
1 | 1 | |||||||
MIRT595633 | Ednra | endothelin receptor type A | ![]() |
1 | 1 | |||||||
MIRT595649 | B3galt5 | UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5 | ![]() |
1 | 1 | |||||||
MIRT595667 | Rxrb | retinoid X receptor beta | ![]() |
1 | 1 | |||||||
MIRT595743 | Ctdspl2 | CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 | ![]() |
1 | 1 | |||||||
MIRT595789 | Fignl2 | fidgetin-like 2 | ![]() |
1 | 1 | |||||||
MIRT595880 | Gid4 | GID complex subunit 4, VID24 homolog | ![]() |
1 | 1 | |||||||
MIRT595909 | Tapt1 | transmembrane anterior posterior transformation 1 | ![]() |
1 | 1 | |||||||
MIRT595919 | Trim9 | tripartite motif-containing 9 | ![]() |
1 | 1 | |||||||
MIRT595925 | Efr3a | EFR3 homolog A | ![]() |
1 | 1 | |||||||
MIRT595937 | Acmsd | amino carboxymuconate semialdehyde decarboxylase | ![]() |
1 | 1 | |||||||
MIRT595943 | B3gnt5 | UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 | ![]() |
1 | 1 | |||||||
MIRT596004 | Disp2 | dispatched RND tramsporter family member 2 | ![]() |
1 | 1 | |||||||
MIRT596008 | Ceacam1 | carcinoembryonic antigen-related cell adhesion molecule 1 | ![]() |
1 | 1 | |||||||
MIRT596167 | Ms4a15 | membrane-spanning 4-domains, subfamily A, member 15 | ![]() |
1 | 1 | |||||||
MIRT597273 | Slc25a33 | solute carrier family 25, member 33 | ![]() |
1 | 1 |