miRTarBase - #MIRT596182


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pre-miRNA Information
pre-miRNA mmu-mir-674   
Genomic Coordinates chr2: 117185127 - 117185226
Synonyms Mirn674, mmu-mir-674, Mir674
Description Mus musculus miR-674 stem-loop
Comment Landgraf et al. show that the 5' miRNA product is the predominant one .
RNA Secondary Structure

Mature miRNA Information
Mature miRNA mmu-miR-674-5p
Sequence 25| GCACUGAGAUGGGAGUGGUGUA |46
Evidence Experimental
Experiments MPSS
Putative Targets

Gene Information
Gene Symbol Med22   
Synonyms AW212655, AW558812, Surf-5, Surf5
Description mediator complex subunit 22
Transcript NM_011513   
Other Transcripts NM_001033908   
Expression
Putative miRNA Targets on Med22
3'UTR of Med22
(miRNA target sites are highlighted)		 
>Med22|NM_011513|3'UTR
   1 GGCTGGACTGCCATGCAGGTGCTGCCTGCTGCCTGCCCAGACCAGCTAGGGCCTGCAATGGCCTTGTGTTTTTCCAAGTT
  81 CTCCTTGGCAGCAGAGCCCCTGACTAGCTCGTTTGACGGACAGACAGTCATAGCCAGCCACCAGCAGGGGCCCAGGCCTT
 161 CCCTTCAATGAAGAGGGATGAAAACACAGGACTTGGTTGTGTGTCAACGGCTGTGGCCAGAAAAGGGTATCCCCCAGGGG
 241 GCGAGGAAGCCCTCCAGGGCAACACAGTCTCTGTCTTACTGCTTTAAATCTCTTGTCTGTCTAGACAGTTTAGTCAAGGC
 321 TGGATTGGCCCCTTGTGGCCTTCCAGGTCTCTAACGACGTTCACTTTCTGGGACAGCCCTGCCTACTGCTTGCTCAGAGA
 401 TTCAGTTCCATGTGAATGTCATCAGACTCACAGTGGAGAGGTGGGATGGGGGAGGGGTAAGGAACTCAAGCAGGGTGGCT
 481 TTGACTCCTGGGCCCAAGATACCTGGATGTCAGCTCGGCCTTATTCATGGAGCTGGAGTCTCCTGGTGTCAGACCTATGT
 561 TAGTCTCAGAGGATAGCAGCAGGCAGGATCTGTCACATAGCTCTCTACAGGGCCACTTAGAATGTTGATACCTGAAACTT
 641 TCTGATCCAGAGAGGCCTTGAGAAATCAAGAGTCCAGTGTAAAATATGTCGTCGGAACCGGGCTGGAGAATGGAGGCCTT
 721 GCCCCACCCCATTAGCTTGAAGTTAAGGTTCCGGTCAGCAGCACCCTGCCTGACTCCCCCTGGTGGTAGGTTTGCTCCTG
 801 CTGCTGCTGCACAGAAGCTGCAGTCAACTACAGATGTCCAGTGCTGCAGTGGACATCTTGTTCCCATCTTAGACTCAGTG
 881 TCACTGCCAAGCTTCAGTAGTTCTAAAGTTCTCCAGAGAGTTCTGGGGTTATCTTTGGTCTCAGTGTTCATCAGCTTAGC
 961 AGAAAAGTGGGAGTATCTACTGTACCCCAAAGTGGCAGAGACTTAGACCAACCCAGGGTGAGTTCCTCACATCTTCCTGT
1041 CACTACCTTGTAGTACTTCAAGGACACTTGAGCGGATGAGTACTGGGACAGTGACTCAGTCCTGTACAAGGGTTGAGGGG
1121 ATAAATTGCTCAGATAGGAACCCAGAGTGCTGGGTTTCCAAAGCCTCGGCCCCTCTGCATCACGTGCATACGTTTCTGGG
1201 ATGATCTGTGTCCTCTTTGGGCAATCACCTCTCTCATATTCCTCATGGTAAAGCAGCTGCCCCATGCCTAGGAATTTCCT
1281 TAAATGGCAGAGTTCTTCGGTAGGTGAGGCAGTAGGTTTTGTCTGCCCCTATCAGCCTCCTGCCCACACCACCACCAGTT
1361 GCCCAGCTTCCCCTCTGCATGGCTACTCTTGCCTGTATACGAACTGCTTGCTCTTTCTGGCTTTGCCTTCCCTCCATTCT
1441 CCTGGGGATGCTACTCCCTTTGTCTTGGGTAGTTCTGCGAGAGACTGCTGGGGACAGGCATGGGAGAAAGCTAGGGCCTT
1521 GTGCATATTAGACAGCTGTAGAAACAGATGTGGTCCAAGTAGCCACTGCTATGACCACTGAGGCATTGTGCTTGCCTCCT
1601 CCTGTCTCTGGCTTTCCCTGTGTAATGTAAGGAAATGGAATGTGTAAAGCCTGGGGCTTAGAGCTGTAGAGCTAGAGTAG
1681 TGGTATATAGAGAAATGCTCAGACCTGTATTGCTGACTGTTACCCAGTTAGGCCAGGACCCTGTAGGGATGGAAACAGGT
1761 CTGCCACCAGGAGCTCTTTGTAAAGTCTCATCACTACCCTACTGGTAAGGGATGGGTAACAGGTAGAGGCTGATAGGAAC
1841 AAGGAGAGTCCTATGTGTCAAGAAGGACCCATGGGGACAGTTTGCCTAAGTCACATGGCCTGTTGACACCACCTTTCTTT
1921 GGATGCAAGAGTGGCCAGAACCGCTTAGCAGAGGGGCCAGCACAGAGGAGAAGAAGGGGAGGCAGTCAGGTGATGTTCAT
2001 TTCTTAACTCTGCATCTGTCTTGCTTTCCCCTCCCTGGCTTTCCTCTGCCTGCTCCTGTCACTCCTGGGGGTTTCTTGTG
2081 GTGGCAAAGCTCAAGTCTCTGCGAAGCTAATGACCTGCCTCTGTGTGAAGCTTACTGGAGGCTGGACCTCGACGCAGATT
2161 CTGCTGATGGCCTCTCAGCCCCTCTTCTGGCGTCCCCGGAGACTGGTGCTGGTCCCTTACAGTCTGCAGCCCCTGTCCAC
2241 TCCCATGGTGGTGGCCCTGGCCCTACAGAACACACCTGAGCCTCTTGGGGTACCATCGCAGGGTAGCCCTCCCTAGGGCC
2321 TAGTTTATCAGAAAGGAAGTGCTGTGGATACCCAGCACAGCCTAGCTTTTTTCAGTTTTAGCTCCCTTGGGGACTTTGGG
2401 ATCAGGAGCCACTGTAGCCTCAGGAACCTGTCCAGGCCAGGGCCAGTTCCCCGTGATGGTTGGGGAATGCTGTCCAGTTA
2481 TTTACAGCAGGTGGCTCCCTTCCTGACTGCCAGTGGAAGTTTGTCCCATTGAAGACCTTGAATAGGGAGGGTGGTTGGTG
2561 ATAGGAAGACAGCCTCAGTTTGTTTAGAATTGTGAGGTATTCAGTGGACCTTAGTCAAGTCCAGTTACCCATCCTTAGGT
2641 TCAGGTTCTATAGAGAGCCCTGTCCACTGCCTGCTGCCTGGAGCATAAATGTCTCTGCCACAGCTGACTGTCCAAGATTG
2721 TGTGAGAGGCAGCTAGCCAGGGTGTCTTCCTGGATTCTCCCACCATTTCCTTCTGCTACTTTTGAGATGAGACTGTTGAA
2801 TAAAACATTAGCTTTT
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' auGUGG--UGAGGGUA------GAGUCACg 5'
            ||:|  ::||||||      ||||||| 
Target 5' gaCATCTTGTTCCCATCTTAGACTCAGTGt 3'
 852 - 881 160.00 -23.10
2 
miRNA  3' augugguGAGGGUAGAGUCACg 5'
                 ||:: :|||||||| 
Target 5' gggttatCTTTGGTCTCAGTGt 3'
 926 - 947 155.00 -17.40
3 
miRNA  3' auguGGUGAGGGUAGAGUCACg 5'
              |:||| |:  ||||| | 
Target 5' ctgcCTACTGCTTGCTCAGAGa 3'
 379 - 400 126.00 -14.50
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions CD4+ T cells (C57BL/6)
Disease MIMAT0003740
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "HITS-CLIP data was present in GSM1013581. RNA binding protein: AGO2. Condition:CD4+ T cells ...

- Loeb GB; Khan AA; Canner D; Hiatt JB; et al., 2012, Molecular cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' auguggugaggguaGAGUCACg 5'
                        ||||||| 
Target 5' ------------gaCUCAGUGu 3'
 		1 - 10
Article - Loeb GB; Khan AA; Canner D; Hiatt JB; et al.
- Molecular cell, 2012
MicroRNAs (miRNAs) are essential components of gene regulation, but identification of miRNA targets remains a major challenge. Most target prediction and discovery relies on perfect complementarity of the miRNA seed to the 3' untranslated region (UTR). However, it is unclear to what extent miRNAs target sites without seed matches. Here, we performed a transcriptome-wide identification of the endogenous targets of a single miRNA-miR-155-in a genetically controlled manner. We found that approximately 40% of miR-155-dependent Argonaute binding occurs at sites without perfect seed matches. The majority of these noncanonical sites feature extensive complementarity to the miRNA seed with one mismatch. These noncanonical sites confer regulation of gene expression, albeit less potently than canonical sites. Thus, noncanonical miRNA binding sites are widespread, often contain seed-like motifs, and can regulate gene expression, generating a continuum of targeting and regulation.
LinkOut: [PMID: 23142080]
94 mmu-miR-674-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT577119 Prps2 phosphoribosyl pyrophosphate synthetase 2 1 3
MIRT579212 Ccdc25 coiled-coil domain containing 25 1 4
MIRT580735 Srp72 signal recognition particle 72 1 2
MIRT581673 Ppp2r2c protein phosphatase 2, regulatory subunit B, gamma 1 1
MIRT582930 Il15ra interleukin 15 receptor, alpha chain 1 1
MIRT584530 Bzrap1 TSPO associated protein 1 1 1
MIRT584648 Bach2 BTB and CNC homology, basic leucine zipper transcription factor 2 1 1
MIRT586666 Mbp myelin basic protein 1 2
MIRT588993 Rpl7l1 ribosomal protein L7-like 1 1 1
MIRT589588 Magt1 magnesium transporter 1 1 1
MIRT590893 Tmem69 transmembrane protein 69 1 2
MIRT590965 Slfn5 schlafen 5 1 2
MIRT591089 Pola2 polymerase (DNA directed), alpha 2 1 2
MIRT591253 Loxl2 lysyl oxidase-like 2 1 2
MIRT591405 Churc1 churchill domain containing 1 1 2
MIRT591425 Casc4 cancer susceptibility candidate 4 1 2
MIRT591686 Slc23a1 solute carrier family 23 (nucleobase transporters), member 1 1 2
MIRT591985 A230046K03Rik WASH complex subunit 4 1 2
MIRT593044 Ogdh oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) 1 2
MIRT593330 Ddx3x DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked 1 1
MIRT594701 Anks1b ankyrin repeat and sterile alpha motif domain containing 1B 1 1
MIRT595566 Sh3rf3 SH3 domain containing ring finger 3 1 1
MIRT595693 Pcsk6 proprotein convertase subtilisin/kexin type 6 1 1
MIRT595863 Myh10 myosin, heavy polypeptide 10, non-muscle 1 1
MIRT596037 Ubp1 upstream binding protein 1 1 1
MIRT596075 Ywhag tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 1 1
MIRT596182 Med22 mediator complex subunit 22 1 1
MIRT596482 Zyg11b zyg-ll family member B, cell cycle regulator 1 1
MIRT596495 Zfp935 zinc finger protein 935 1 1
MIRT596811 Tyk2 tyrosine kinase 2 1 1
MIRT596873 Tspan15 tetraspanin 15 1 1
MIRT597076 Tbc1d24 TBC1 domain family, member 24 1 1
MIRT597180 Spc24 SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae) 1 1
MIRT597235 Slc7a14 solute carrier family 7 (cationic amino acid transporter, y+ system), member 14 1 1
MIRT597281 Slc22a15 solute carrier family 22 (organic anion/cation transporter), member 15 1 1
MIRT597347 Scd3 stearoyl-coenzyme A desaturase 3 1 1
MIRT597359 Sap18 Sin3-associated polypeptide 18 1 1
MIRT597446 Rin1 Ras and Rab interactor 1 1 1
MIRT597514 Rbbp4 retinoblastoma binding protein 4, chromatin remodeling factor 1 1
MIRT597557 Rab33b RAB33B, member RAS oncogene family 1 1
MIRT597808 Pla2g4b phospholipase A2, group IVB (cytosolic) 1 1
MIRT597974 Nup133 nucleoporin 133 1 1
MIRT598205 Mpv17l Mpv17 transgene, kidney disease mutant-like 1 1
MIRT598257 Mfsd2b major facilitator superfamily domain containing 2B 1 1
MIRT598574 Irak1 interleukin-1 receptor-associated kinase 1 1 1
MIRT598860 Gm10778 predicted gene 10778 1 1
MIRT599029 Fam177a family with sequence similarity 177, member A 1 1
MIRT599181 Dennd5b DENN/MADD domain containing 5B 1 1
MIRT599224 Dcaf4 DDB1 and CUL4 associated factor 4 1 1
MIRT599261 D3Ertd254e DNA segment, Chr 3, ERATO Doi 254, expressed 1 1
MIRT599278 Cyp2e1 cytochrome P450, family 2, subfamily e, polypeptide 1 1 1
MIRT599286 Cxcr2 chemokine (C-X-C motif) receptor 2 1 1
MIRT599294 Cx3cr1 chemokine (C-X3-C motif) receptor 1 1 1
MIRT599328 Comt catechol-O-methyltransferase 1 1
MIRT599355 Commd7 COMM domain containing 7 1 1
MIRT599488 Ccr9 chemokine (C-C motif) receptor 9 1 1
MIRT599583 Brip1 BRCA1 interacting protein C-terminal helicase 1 1 1
MIRT599647 Banp BTG3 associated nuclear protein 1 1
MIRT599683 Arl16 ADP-ribosylation factor-like 16 1 1
MIRT599726 Ankfy1 ankyrin repeat and FYVE domain containing 1 1 1
MIRT600098 1700047I17Rik2 RIKEN cDNA 1700047I17 gene 2 1 1
MIRT601167 Atrn attractin 1 1
MIRT601187 Asxl2 additional sex combs like 2 (Drosophila) 1 1
MIRT601347 Zfp202 zinc finger protein 202 1 1
MIRT601378 Wdr89 WD repeat domain 89 1 1
MIRT601554 Tapbpl TAP binding protein-like 1 1
MIRT601574 Ssr1 signal sequence receptor, alpha 1 1
MIRT601739 Rbm34 RNA binding motif protein 34 1 1
MIRT601844 Polr2l polymerase (RNA) II (DNA directed) polypeptide L 1 1
MIRT601894 Pbld1 phenazine biosynthesis-like protein domain containing 1 1 1
MIRT601949 Nol3 nucleolar protein 3 (apoptosis repressor with CARD domain) 1 1
MIRT602826 AK010878 GON7, KEOPS complex subunit homolog 1 1
MIRT602859 Rmi2 RecQ mediated genome instability 2 1 1
MIRT602916 1700016D06Rik RIKEN cDNA 1700016D06 gene 1 1
MIRT603001 Myo1c myosin IC 1 1
MIRT603576 Ppm1k protein phosphatase 1K (PP2C domain containing) 1 1
MIRT603581 Ppil4 peptidylprolyl isomerase (cyclophilin)-like 4 1 1
MIRT603702 Nip7 NIP7, nucleolar pre-rRNA processing protein 1 1
MIRT603710 Naip5 NLR family, apoptosis inhibitory protein 5 1 1
MIRT603942 H2-T23 histocompatibility 2, T region locus 23 1 1
MIRT604103 Dph5 diphthamide biosynthesis 5 1 1
MIRT604202 Cpne9 copine family member IX 1 1
MIRT604229 Clca2 chloride channel accessory 3A2 1 1
MIRT604242 Cflar CASP8 and FADD-like apoptosis regulator 1 1
MIRT604392 Aipl1 aryl hydrocarbon receptor-interacting protein-like 1 1 1
MIRT604542 Ypel2 yippee-like 2 (Drosophila) 1 1
MIRT605321 Zfp605 zinc finger protein 605 1 1
MIRT605421 T2 brachyury 2 1 1
MIRT605424 Synrg synergin, gamma 1 1
MIRT605630 Mfsd11 major facilitator superfamily domain containing 11 1 1
MIRT605750 Exosc2 exosome component 2 1 1
MIRT605832 Cenpf centromere protein F 1 1
MIRT606053 Zfp607 zinc finger protein 607A 1 1
MIRT606349 Lcmt2 leucine carboxyl methyltransferase 2 1 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-674 Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-674 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated

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