miRTarBase - #MIRT600166


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miRNA Infomation
miRNA namemmu-miR-1194

Gene Information
Gene Symbol Xpo7   
Synonyms 4930506C02Rik, BB164534, Ranbp16, mKIAA0745
Description exportin 7
Transcript NM_023045   
Expression
Putative miRNA Targets on Xpo7
3'UTR of Xpo7
(miRNA target sites are highlighted)		 
>Xpo7|NM_023045|3'UTR
   1 CAACTCTCGGACTCTACCTTGCAGAGCAGCGTCCCTTTGGTCTGGTCCAGAGGGTGAACAGTTGCAAGGGAGAGAGCCTG
  81 GCTGATCCCGGCTCCTTCCTCCAGGGGTATGGGGGAAATGGCAAAAGTCAACCAGCTATTTCCCCAGAAAGTACGGGGAA
 161 GTACGGGGTGTGCGTGCACTCACTGAGGGACAGGGCACTGCTGGTTCCTGGGGGACTGGGGTGGGAAGGGGTGGTGGGAG
 241 GAGACAGACGCACAGGCATCTGAGCCTCCGGCCGCTCCTGGGGTCACCGTGCAGGGAGAGCCCGGCGCCCTGCCGCAGCC
 321 TGCCTTGTATAAACATGTACATTTTTTCATAACGTTTTCAACAAGGTTTATATTGACTCAAGTTTAAAAACAAAAGTGTG
 401 ACTGAAAACTTTTTACAGAGTCTAGTGCACCAATGCTGACGTGAGGGGTGATGTATGGCGAGTGAAGAAAATGTGCATTG
 481 TGGTGGCCTGAAGCTTTATTGGACAAGGATGTGTGAAAGTGCAGAGATATATTTAGTGACACAGTGTAGAGAGGCAAAAA
 561 AGGAAAAAACTCCAAATGTATATTTTTTCTTACTGCCCTTTCCCTCCCCACCCCCACTGATGCGTTCCTGATGCTGTATT
 641 AACCTTGTTATTAGGAACTCTGAGCCATGCGGGAGCACCACCCTCCCCATCCATGGATGCTGCCCTGGGCCCCCCAGCCT
 721 CCTGCAGTGACAGATAACTCCAGCTAAAGTCTCTGGTGTTCTTATCTCCATCCTTTCTCCCATTTTACTTAACCCTCATC
 801 CTCAGAAAGATGCCTCTTGCTATTAAAAGTCGGATTTATGTTTTAGGATTCTTGGTCTCTATAGGGAGACGACAGAGAAT
 881 TGAGCCATTTGCTCTCTTGTTGAGCAATTTGCATGAGTCCACCAGAGGCCTAATATGTGTGGCCATAACTTTTGTCTTCC
 961 CCAGCCTTTGAGGCAGTGTGTGTGGATGTGTGTGGATATTTATGTGTGTACCCTGCACTCATGAATGTATGAACTGGAGG
1041 AAGTTACTACAGGGGAGGGCTCTCAATAACAAGGTCTACCTAGCATGAAGTATTTAACATTCTCCCTTGAAAAATATACA
1121 TTTTTATAAAATAAAAACCATAATAAATGTTTTGAATATTAAAAAAGAAAAGTGAACCTACAGAGGAACATTGGATGGAG
1201 AAAACTCTTTGCCTTGTACTTTCCCACAACTGCTGCTAGTTATATACATCTCTAGTACAGCTCTTACCCATGGGACATTA
1281 CCAATTAGGTTTTATTTTTATTTTCCTCAATCCTCACAAACAAGCTTATTAATTTTCCTTCTCCTCTGGCGACTGTGTGG
1361 TGAATCTTTTCTTGCGTGATCAGGTTGCGGATAGACTTGTAAGGGTGTTTGCTGCATACAGTGTAAGCATTGTGACCGCC
1441 AATAAACTTCGATGGTTTCTACTGACCTGGTTTCAGCAGTCACGTGTAGTGTGTTCAGGGATGTGTCTCACTGTCAACAC
1521 ATGGAGATATTTAGACAAACATGCTTTTTTTTTTTTTAAGCCAGTAGGTGCAGAAGTCCCTGTGTCTTGTAAAACTAACG
1601 CAGACTGTGTCTGCCTCAGCTCTTCTGACTGGTTCAGCTCACATACTTATAGCATAATGTTCTCCAGAGTTGTCAAAATG
1681 AAGACAGTCTACCTCTTTCCAGGTAATAAAGTGGCGACCTACATATAAGCAGTAGCTGAAGAAAGGCCCATTGGGTTAGT
1761 CCTTACACCTGCCTCTCTGATACAGGCTGGGCTTCATTTATTAGGCCTTGACAAGGTCAGTGGCAAATGTTTTCCCCTGG
1841 AATAGAATGTATAGGCCAAATGAAGCAAATAATGAAGACTAGTTTCTGTGATTTATGGCCCTGTACTGCACAGTGCTTTG
1921 ATTACGAGGGAGCCCATGGCTAAGACCATTGAAAAGCAGGAACAATATAGGGCAGTTGTGGGTATCTTACCTGCAAGGGC
2001 CCAAGAGCCAATCCTGAATTCCTTCTTAGGAGTCCTAGAAAAACCATCCTGGCACATGCTCAGGAGAACCTGGGATACTA
2081 ATTCTGAAGTAAATAAGACAAAGGGACTAGGAAGCTGTCTCACAAACACTAGAAAAACCTTGAAGTAACAGCTGGTCAAC
2161 AAAACCCCAGTGTCCTTCCCTCTCTCCTACGGAAGAGACACTAGGGATGATAGTACCTTTGGTCAGTCACGGCACAGTGC
2241 TTAAGCTTGAGATCTTCCACGGCCCCAAGCTGTGTAAGACTCCGCTGACAAAGGTTTGCCCTGACATAGTAGTGCATGCC
2321 TTTAGCCCCAGCAATTGGGAAGCAAAGATTGGCAAATTGAAGTTTGAGGTCAGGTAGGACTACAAAGAAACCATGGATGG
2401 GGAGAGAGAGAAGGGAAGGTTTTTAGGATTTGGGAAATGAAAACAGGATTAGTTCAATATATACCTTGGCTACACAACAA
2481 AGCCATTCTGGACTACATGGGACCCCACCCCAAACACACATTACTAATTTCATAAAATTTAACCTAATACGAAATTCAGT
2561 TATTTTTCTTTTTACCTTTTTATTTTGTTATTTTTTTTATAGTCCAGTCATTATCTCCCTCCCTTTCTGCCCTCCCACAA
2641 TTCCTCATCCCATTCCTCCCCCCACCCCTCTGAAAGGATGTCCCCACACACCCCTATACTCCACCAGGCCTTCCCATTCC
2721 CTGGGGCCTCAAGTATTAGGTGCATCTTCTCTCATTGAGACCAGACCAGGCAGTCCTCTCCTGTATATGTGTCAGGGGAC
2801 TTGGACCAGCTAGTGTATGCTGCCTGGTTAGTGGCTCAATGTCAGATCTCACTGGGGAGGGGTTCCAGGTTTGTTGAGAC
2881 TACTGGCCCTCCCATGGGCTCTTCAGACCATTGGTCAGGTGTAAGTATCTGCTTCTGTCTCAGTCAGCTGCTGGTAGAGC
2961 ATCTCAGAGGGCAGCTGTGCTATATATAGACTCCTGTTATGCATGTCCTTTTGGGTCTGAGATGCCTCACTCTTGGTGAT
3041 ATTTTCTAGTTCCATCCATTTGCCTGCAAAACTCATGATGTCTTCGTCCTTGATAGCTGAATAGCATTCCATTGTGTAAA
3121 TGAACCACATTATCTGTATTCATTCTTCCGTTGTGGGACATCTAGGTTGTTCCCAGCTTCTGGCTATCACAAATAAGGCC
3201 ACCATGGTCGAGTACATGCCCAAGAGTAGTATAGCTGGGTCTTCAGGTAGATCTATTTCCAATTTTCTGAGGAACCTCCA
3281 GATTGACTTCCAGAGTGGTTGTACCATTTTGCAATCCCACCAGCAATGGAGGAGTGCTCCTCTTTCTCTACATTCTTGCC
3361 AACATGTGATGTCACCTTAGTTTTTGACCTTAGCTAATCTGGTCGGTATAAGGTGGTATCTCAGGGTCATTTTGATTTGT
3441 ATTTCCCTGATCAGTAAGGACTCTGAACATTCAAGTGCTTCTCAGTCATTTGAGATTCCTCTGTTATGAATTCTCTGTTT
3521 AGTTGTATACCCCATTTTTTTCTATTGGGTTGTTTGGTTTTTTTTTGGAGGTTAGCTTCTTGAGTTCTTTATATATTTTG
3601 GATATTAGCGCTCTATCAGATGTGGGGTTAGGGATGAATTTTTTTCCAATCTGTAGGTTGCCGGAAATCCTATACCTTCC
3681 TCTTTTCTCAGATGTCATGGAAAGGTGTATGTTGTGGTTATCTGTGCTGTTCCTGGACACAAGTGTTTCATCTACACAGT
3761 GATATCTGGAATAAGCTACACTGAACCCTAAATTCCCTTACTGATGTTTATTAAATTTTATTGTGTACTATGTATTTATT
3841 AGCTTAACCCAAATAAAGCTAATATTTTCCTACTACAGTGCAAACCAAAGATGGGATTTTACTCAGAGTTGAAATGTTAG
3921 ATTTTTATATTCTGTTTTTGGTTTTATTTTGCTGGTTTTTCAAGACTAAGACTTCTCTGTGTGACAGCTCTGACTGTCCT
4001 GGAACTATATAGACCAGGCTGGCCTCAAACTCAAGAGATATGCCTGCCTCTGCTTCCCAAGTGCTGGGACTAAAGGTGTG
4081 CACCACCAACCACCTCCTGGCTAAGTTCTGTTTTGATATGTGTTCTTATGTAGGCAAGGTTAGATTCAAATTTAATGTAA
4161 CCAAGGTTAGCCTTGAATTTTGGCTCGCCTCCCCTCCTAAGTACTGATATCATAGGCATGTGCCACCATGCCTAGCTAGG
4241 CTTTGAAATTTTAAAAAGTAATGACTTGAGGCAGGTACCTCAATTTTCTAATGGAAAGTGACAGGATGTATTCTCTTTCT
4321 CCAGAGCATAGGCTTACTCTAATTACTCTCTCCTGGAGAGTAATGCTCCAGGATCCTGTAATCAATTTCTTCTAAGCACA
4401 TAGGCCATTTCCAGAATAGCCATGGTCCTAGAACATGGATTAACCTAGATAGCCAAAACAGCACTCAGCAGCCAGTTCTG
4481 TCCAAACCAGAACTGACAAGATCGACAAACCTACATGGTAACCACTAATGTGTCAAACAGCAACGCAAAAATGGAGAGGA
4561 AGAACAGTTGGCTTAACTGTAAAATCCTTGCCACACTTAGGAAAACAAATTTGAAAGAACTAAAATGTGTAGCCCCAACT
4641 ACAGTGAACCATCTATTAGCTCGGTGCGGTATTGTGGGGGAGGGGGGGGCTCTTCCTTTCAGCTATCTTCTAAGTTGATG
4721 ACACTTGAGTGTTTTCCAAACTCTACATGCTGGCTGGTCAGCCACTTTGGTATACCTGAGAAACAATTTCCATTAAAGGA
4801 AGCTGCTACCGGACAATGGGGCTGAGATCATCAGAATGAAGGGTAGAATCGAGTTTGAAAATGACTTTCCTTAGCAGTTC
4881 ATGGTTCCCTGTACCCTTGTCATCTGTTCATTCATGACACTTGGCATCTATGGGCTGGGCCTTTTTGATAGCTACAGAAA
4961 AGGAACCCAGGGAATCAAAACACTTGGTTCAACTCTTCTGTGCAGAACCCATTAATAGTAAACACTGACTTTAAATGTGA
5041 ACAGGGCAGGTTGTAGCCCAGTGGAAGAGTGCTTATTCAGCATGTACAAGCCCTGATTTTAATCCTCAGCAATCCCATTC
5121 CCCAGGATCGGTGAACAAACAGTATAATAAAAGCTGTATACACCGCATTATATACTTTGTGTGTGTGTGTTGTTTTTGGA
5201 GTCAGGGCTTCTCTCTGTAGCATTGGCTGTCCTGGAACTAACTGTAGATTAGGCTGGCCTCAAACTCAGAGATCCTCCTG
5281 CCTTCCACCTCCCAGAGTGTAGGAATTAAAGGCATGCACAACCACCTCTTGGTGCACTTATACTTTTAATTGAAGACTTC
5361 ATAAAAGCATTCAGCACACAGAAACACTTAGTAACCAAACCCATCTCATCACAGAGTTGCAAAGGAGTGCAACCTGAGCA
5441 CTCCTAAGCCACAAATTATGCCAGCCACAAACATCTGGATCAAGGTCCGGAAAACAAGGCCACAGCATAAAAACGTCAAG
5521 AGCTGGATGCAGTGGCTCAGACCTATGATAGCAGCACTTAGAAGGCTGGTGGAGAAACACCACAAATGAACTGAAATCCA
5601 GTCTTGGGACAAAAGGAAGGAAGGAAGGTGATGGTAGAGCCAGGCCAAAAGCACTTGCTGCTCTTGGAAAAGATCAGTGT
5681 AAGCTCCTAGCACCCAAATCAGGCAGCTCACAACTGCCTGTGACTTTAGTTCCATGGGATCCAACAACCTCTCTGGCCCT
5761 GTATTCAAGTACACATATATACGTAATTTTTTTTAGAGAAATTTTTGAATGAATGATAGACATGATCTTATGAAAAAGCT
5841 CAGAGGAGTTGTACTTGGTGGTGTACACCTGTTATCCCAGAAGTAAGGAAACAAAAAAACCAAGGCTGGATAATATGACT
5921 GCCCTCTCCCCCGAACGCTCAGAAGGGCCACTTACACAATACGTATTCCCCACAAGTAGTAAAAAGTGTGGAGAATATAG
6001 CCCAAAGTCAGAAAATGTAAGCCTCTCGGCTCTCAAGAGTAGTTGGTATTAAAACATCCAGGTGTGGAAATGAAAACAAT
6081 TTTAAGAGTACAGCTGGCCATTTCTTCATCTGATTAGCCACCTCTTACATCCAGTCTGAGCACACGTCACAAAGAATATC
6161 GCGTTACAAACTATTGACAAGCTATAAACACCACAAGCAGAACCCTCCCACTCAGCTAGGCAGTTGCCACAGCGGGCTCG
6241 GCGGCCACACCCTTCCACATTCCTTTTACATCTGCAAAACGCGCTTTTGTCAGTGTATACGCGCTATACTCTGTGCTTAT
6321 CTGCAAACCCAAATCTTCCCACCCCTGCTGTCCCCATGTCTCGTTTTAAGACCTGCTCGTTTATTTGAGGTAATCGCAAT
6401 CTTGTCCCTTATCTGTCCCAGCAACCAAACTCTGCTCCTTCCAAGTCAGCACCAAAGGATCAGGTCACGTCCGGATGGAT
6481 GACAAGGATGGGATTTATGGCCGCAGATGCGTTTGCAGAAGACAAGCAGAGGGTGGAAAGAGGTACTGGAGTGAGTGAAG
6561 TTTCCTGCAGAGATCCCAGCCGGACCCACCGCAGCTGACACCAAGCGCAGCGGCTGAAATCAAAGCCTGCGTCTGCGCGG
6641 CCCCGGAAGTGATCCTGCGCGGCCCTTGCGTCGGAAGGAGACGCCGCACCTAGGTTGCATCTGGGCTGCGCAGAGTCCCC
6721 AGACCAGATCCCGCCTTTGTTCCACGCACGCGCAGTAAGGACTCATGTGCCCGGTTGTTTCCGGCTGTAACCGAGGTGCT
6801 AACCTACTCCGGGTATATCTCCCCTGGGCCCTGCTCTTGCAGAAATCCGAGTTTATTTGCATCAGGTCCTTACACCGAAA
6881 TTCACAGCGGCTGTCCCTGTCCCAAAGTTGAAGTGCTGAACCCGTGGAGGAAGTCTCAGACGCAAAGGGGAGCTCTGCAG
6961 TGGACAGCTCCCAGGGAAGCCCTCATCAGACCAAGGAGTCATGACAAAAAGGCGCGAGACATCTTGTGAGGAATAGCAGA
7041 AATAATATGACTAGAGGGCGAATGCAGCCCTCTTTGTATCAGTAAAGAACGGGCCTGCAAGGTTGGGCTTTGATCCTAAA
7121 ATCCGGTTTCTAAACCTCCAAAGACTCCTTAGCAAAGCAGCCTGCCGAGCAAGCCTTTCTTAACTGAGCTTAACGGATGG
7201 GACACGTGACCCAAGGCTAGGGCTGTGAGAAAGGAATTTGAGGAATGTTGAGAGGTGGACTCAAAACTTTGTGATCAGCT
7281 GAATTCAAACGATTTTCCTGTGATTCCCTAGTTCCAGAACAGAGTGACACCTGATTGGGAAAGAGAAAGCTCTGGGCAAG
7361 ACTAGGGTGTGGGTTGTAAAGAAGATAGGACACAGGCTGACCCTGAGAGAAGGTCCTATCCTTGAAGATATCAAAACATT
7441 TCTGCAAAATGAATACCAATCACACAGAAACTCAGAAGAGGAAGTCATCATCTCACTAAGCCTCAAATAAAAAGCCAAAG
7521 ACATAAAGGAATAAAATAACATTTAGTGAGCTGGAGAGGTAATTTGCAGTTGAAAGCTCTGGCTGCTCTTGTAGAGACCC
7601 TACATTCCATCCTTAGGGCCCACATGTTGGCTCACAATGGTTCTGTCACTCTAGTTCCAGGGGATTCAACACCTTTTTCT
7681 GGCCTCCTCGAGCCAGAGGCAATATACATTAGGCACAGACTTAGAAAACACCCATATACGTAAAATATTTTTCGAACTTA
7761 AGGCTTCTAGACTATTATCTCTTATGAATTTAGATGCATTCTTACCAAAATGTATGTCTGAATCAGTATATAAAAAGGAA
7841 TGATACATCATGATTAAGTGGCTGAATCTAGAATGCAATGTTGATTTAATTTTCAAAAGAATATGGCTATAGTGATGGTT
7921 CAGCAGTTAAGAACTTGCTGCTCTTCCAGAGAGCACTGAGTTCAATTCCCAGCACCCACATGGTTGCTTACAACTATCTG
8001 TAACTCCAGTTCCACATGATCTAACTACCTCTTCTGGCCTCCGTGGGCACTAGCCACTGAAGTGCTCAGCCATGCCATGC
8081 AGACAAAACACCTATACACATAATTTTCTCTTTTTTTAAAGTTGTATTTGTTTTATTATATGTAAGTACAATGTAGCTGT
8161 CTTCAGACACTCCAGAAGAGGGCATCAGATCCCATTACAGATGGATGTGAGCCACCATGTGGTTGCTGGGATCTGAACTC
8241 AGGACCTTTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCTACACATAATTTTCTATAAAAAGCA
8321 TAACTGTAACACTGCATGAACTAAGGAAAAATTAGAAATCATCTCAGTAGATATATAAAAAATATATATAATGAAATTTT
8401 AAACTCACTAAACTTCAAAAAAAAAAGATATTATGCTAGTGATATTGCTCTGTTGGCAGAGTGCCTGCCTAGCACACAGG
8481 AAGCCCTGGATTCAGTTCCTAGCACACCAAGCCCAACACAGAAAATTAGAAGTCCAAGGTCATTCTCAGCTACATAGTAA
8561 GTTCAAGGCCAACTTAGGGTTTCTTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTTGGGTTT
8641 TTTGTTTGGTTGGTTTGGGGTTTGGTATTTTGTTTTTTCAAAACAGGCTTTCTCTTTGTAATCTTAGTTGTCCTAGAACT
8721 TGCTCTGGAGACCAGGCTGGCCTTAAACTCATTGAGATCTACCTGTTTATACATCCCAAATAATAACTCAGCAAAACTTT
8801 TTGTGAGCACTAGTATTGGAGAAAACCAACTCAGGGCCTTGTACTTGGTGCCCAGTATAATCCCAACAACACATGAGAAC
8881 ATTAAAATGGACTTTTTCCCATTTAAAGAGAGCAAAGGGCTATCTGTGGTAGCACAGACCTGCAGTCCTATCACTTGGAA
8961 GGCTGAGGCAGGAGGGCTCAAGGTTCAAGGCCATTCTGTGTTCTCTATCAGAAGACTGTCTTGGGCAGAAGAGAGGGAGA
9041 AGGGGAGGAGGCAGGCAGGCCAGGCTTTAGTACACACCTTTAAACCAAGCACTCAGGGAGCAGAAGGAACTCTCTTTGAG
9121 TTCAGAGCCATCCTGATCTACATAGCTAGTTCCAGGCCAACCAGAGCTACATAGTGAGATACTCTTTCAGAAAGAGAGTG
9201 GATGTTTTACCAAAATGTCCTAGCCAAGTGTATGCAGCTCAGAAAGAAAAAGCACATGGGTCTCAAAGGAAAGGGGAAAT
9281 CTTGTCTTTATTCTCAGATGTCATGATTTAGAGTACAAAAAAAAAAAAAATCCACTGAAACTACTAAGTTGAATTAAGCA
9361 AAACCGCAGAAGATAATATCTATTATAACATCAATATATTAAATTGTTCTCAAGTTTTTAATTTTCAAGTTATACAATGA
9441 GTTTCATCATGGTACTTCATATAAATGTGCAGAAGTTTGTCCTTTGTTCCTCTTCTCTGTGTCCCCTCCACATCAGCAAC
9521 CAGAGAAAAGCCAGCCATAACATGTTTAACATGCCCAAGACCCTAGATTTGCCTATGTTTGTGCTATACCAATGGGGGGG
9601 GGGGGGCAGATGAAGATTATTTGTATGTACTAAAAACAATTAGATTAAAATTTAAAATATATACTATTTTTATGGCATCC
9681 AAGAACATGAAATACACATGAGTAATTATAGATCTCTGCTGAAATCTATAGAATAATGTCAAGGAAATCTAGACTGTAAC
9761 CTGCTCATGACACAAAACACTGTGAGGTTGATTATCTTCACACTGCATTCTTTGGTGGTTTGGTGTTGTTATAGAGACAG
9841 AACATACGTGCTAAGAAAGCACATTACCATGAAATTACATATCCAGCCCCTGACATTGATCGCTATATTCAATAAAATCT
9921 GAAAATTTTCAAATTTTATTGAATTTTTTTGTACTTTAAATTTTTATTGGAGTATATTCATTGTACATAGAGATGGGTTT
10001 CATAACGGCATTTTTTTGAGTCAGTTTCTCACTATGTAGCTCTGGTGTCCTGGACTTTTCCAATGCAGATCAGGCCTGCC
10081 TCTGCCTCTGAGTGTGGGATTAAAGGTGGTGCCACTTCATCCAGCGCCATTAAAACACTTTGATTTATTTATAGATCTCT
10161 CCAACAGAAATTTGAAAGGGAGCCAGGGAATAGTGGCACACATCTTTGATCCCAGCATTCAGGAGACAGTGGCAGGTGGA
10241 TCTCTGAGTTGGAGGCCAACCTAGACTACAGAACAGCCAGGGCTACACAGAGAAGCCCTGTCTTGGGGTAGGGAGAAGTA
10321 GGGATTCAAAGGACTTTTTGTGGAAACTAATATATCAATTGTATATGTGAAAATGGAAAAATCGGAGATAGCTACAAGTC
10401 TTCTTTCTGATTTTTTTTATATTTATTTTATGTGTATGAACGTTTTACCTATACATACGTGTATGCACCACATAATTTGC
10481 CTGCAAGGTCAGAAGAAGGCATCAGATCTCCTGGAACTGAAGGTACAGAGAGTTAAGCTATCCTGTTGGTGCTGGGAACA
10561 CCTCCACTGATGAGCCATCTTTCCAGCCACTACAGCCTTTTCTTTTGGTGCTCAGGGTGGAAGCCAGGGCCTTTCGCATA
10641 AAAGCCAAGTGCTCTACCACTAAACTACACCCTCAGCCTTAAAATATTTGTTTAAAATAAAAAGATCAGCTCAAGCATTC
10721 ATGCTGCCTGATCCGATGATCTACTATCAAACTAGGGTGCCTCTAGCTTGAGGGCAGAAATGCAGACCTATGAAAAGGAA
10801 CCAGTCCAGAAAGCCTGACCGACAGGATCAATAGACAACAAAGATGCCTCGGTCAGTGTACAGGAAAGGATGGTCTTTTA
10881 CAGGATTGGTGTTGGGGGACTTGCATTTGGGGAAAGCAGGAGGGGAGGGATTAGCAGTGAACCTTTCCTACTGTATAAAT
10961 AAGAATGGACTCAAAAGAATGTAGTAGCATATGCCTGGAGTCCCAGATACTCAGGAGGCGGAGACAAATGCTCACAAGTT
11041 CAATGCCAGTCTTTACAATATGTGACACTGTTGTGGAGTTCATGACCCCTGGGGAAAAAAACCACACTCAGTCCAGATTG
11121 TAATTAGTTAAATCTATTGAAGCTCTAGCAGGTCAACAATCCCTGACCCAAAGGAGATTGCTATGTGAAGGGAGTAAGGG
11201 AAGGGTTTTAAAAGGCAAAGGCCACCAGACCTTGAATATCTGCACAAGCAAGCCAAGAGCTATTCTGTCTGCCAAGATTA
11281 GGTACCCAAGGCAACCTTAAAATAGTCCTTGAATGTCTGCATAAGCAAGTTACAGAGGCCAAAAGGCAGTCATATCATAA
11361 CAAGTAGATGGCACAGCTGGACTCGCCTGTGTAAAGGGTGACTACATCTGGGTTACGGGAAAGTTATCTTCCAGATATCA
11441 GAGTCAAAGACAAATGACCAGTGGGTGTCAGAACGGATGCCTGGCATAAAAGGGAGTTTCTTTAGCCATCACAGCATCAT
11521 CCTAGAAAAGGTCATTCAAAATCTATCATACACCTAAGAATCATATACCTAAGAATCAAAGTTAAAATCAGAGTCAGGTG
11601 AGGAGGTGGAGGGTCACACCTATAATTCCAACACTGGGGAGGGAGAGGTAAAAGAATCTTTTGAGTTCAAAAACAGCCTT
11681 GCTACATACCCAGACCTTGCTACATACCCAGACCTTGTTTTGGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions mESCs
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM622570. RNA binding protein: AGO2. Condition:WT1A HITS-CLIP data was present in GSM622572. RNA binding protein: AGO2. Condition:WT2 HITS-CLIP data was present in GSM622573. RNA binding protein: AGO2. Condition:KO1 HITS-CLIP data was present in GSM622574. RNA binding protein: AGO2. Condition:KO2 ...

- Leung AK; Young AG; Bhutkar A; Zheng GX; et al., 2011, Nature structural & molecular biology.

Article - Leung AK; Young AG; Bhutkar A; Zheng GX; et al.
- Nature structural & molecular biology, 2011
MicroRNAs (miRNAs) are 19-22-nucleotide noncoding RNAs that post-transcriptionally regulate mRNA targets. We have identified endogenous miRNA binding sites in mouse embryonic stem cells (mESCs), by performing photo-cross-linking immunoprecipitation using antibodies to Argonaute (Ago2) followed by deep sequencing of RNAs (CLIP-seq). We also performed CLIP-seq in Dicer(-)/(-) mESCs that lack mature miRNAs, allowing us to define whether the association of Ago2 with the identified sites was miRNA dependent. A significantly enriched motif, GCACUU, was identified only in wild-type mESCs in 3' untranslated and coding regions. This motif matches the seed of a miRNA family that constitutes ~68% of the mESC miRNA population. Unexpectedly, a G-rich motif was enriched in sequences cross-linked to Ago2 in both the presence and absence of miRNAs. Expression analysis and reporter assays confirmed that the seed-related motif confers miRNA-directed regulation on host mRNAs and that the G-rich motif can modulate this regulation.
LinkOut: [PMID: 21258322]
CLIP-seq Support 1 for dataset GSM622570
Method / RBP HITS-CLIP / AGO2
Cell line / Condition mESCs / WT1A
Location of target site NM_023045 | 3UTR | AACUUGCUCUGGAGACCAGGCUGGCCUUAAAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21258322 / GSE25310
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM622572
Method / RBP HITS-CLIP / AGO2
Cell line / Condition mESCs / WT2
Location of target site NM_023045 | 3UTR | ACUUGCUCUGGAGACCAGGCUGGCCUUAAACUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21258322 / GSE25310
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM622573
Method / RBP HITS-CLIP / AGO2
Cell line / Condition mESCs / KO1
Location of target site NM_023045 | 3UTR | AACUUGCUCUGGAGACCAGGCUGGCCUUAAACU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21258322 / GSE25310
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM622574
Method / RBP HITS-CLIP / AGO2
Cell line / Condition mESCs / KO2
Location of target site NM_023045 | 3UTR | GAACUUGCUCUGGAGACCAGGCUGGCCUUAAACUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21258322 / GSE25310
CLIP-seq Viewer Link
39 mmu-miR-1194 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT577399 Usp29 ubiquitin specific peptidase 29 2 2
MIRT578645 Gtf2h2 general transcription factor II H, polypeptide 2 2 4
MIRT583791 Elf1 E74-like factor 1 2 2
MIRT585587 Tox4 TOX high mobility group box family member 4 2 4
MIRT585769 Spg21 SPG21, maspardin 2 2
MIRT586369 Pctp phosphatidylcholine transfer protein 2 6
MIRT586934 H2-T24 histocompatibility 2, T region locus 24 2 4
MIRT587278 Fam154b stabilizer of axonemal microtubules 2 2 2
MIRT589358 Osbpl8 oxysterol binding protein-like 8 2 4
MIRT591418 Cd300a CD300A molecule 2 4
MIRT594881 Lpar6 lysophosphatidic acid receptor 6 2 2
MIRT594899 Hs6st2 heparan sulfate 6-O-sulfotransferase 2 2 2
MIRT595087 Unc5d unc-5 netrin receptor D 2 2
MIRT595608 Jazf1 JAZF zinc finger 1 2 2
MIRT595914 Syne2 spectrin repeat containing, nuclear envelope 2 2 2
MIRT596713 Ybey ybeY metallopeptidase 2 2
MIRT597013 Thoc6 THO complex 6 2 2
MIRT597522 Rbak RB-associated KRAB zinc finger 2 2
MIRT598050 Nip7 NIP7, nucleolar pre-rRNA processing protein 2 2
MIRT598082 Neu3 neuraminidase 3 2 2
MIRT598528 Itsn1 intersectin 1 (SH3 domain protein 1A) 2 2
MIRT598953 Ggps1 geranylgeranyl diphosphate synthase 1 2 2
MIRT598967 Gata5 GATA binding protein 5 2 2
MIRT599086 Efcab4a calcium release activated channel regulator 2B 2 2
MIRT599348 Commd7 COMM domain containing 7 2 2
MIRT599554 C3ar1 complement component 3a receptor 1 2 2
MIRT600166 Xpo7 exportin 7 2 2
MIRT600668 March5 membrane-associated ring finger (C3HC4) 5 2 2
MIRT600971 Dlc1 deleted in liver cancer 1 2 2
MIRT601455 Tnfsf10 tumor necrosis factor (ligand) superfamily, member 10 2 2
MIRT601502 Tmem88b transmembrane protein 88B 2 2
MIRT601514 Tmem151a transmembrane protein 151A 2 2
MIRT601558 T2 brachyury 2 2 2
MIRT601925 Onecut3 one cut domain, family member 3 2 2
MIRT601984 Mzt1 mitotic spindle organizing protein 1 2 2
MIRT602669 Car5b carbonic anhydrase 5b, mitochondrial 2 2
MIRT603331 Slc35d2 solute carrier family 35, member D2 2 2
MIRT605546 Ppp1r16b protein phosphatase 1, regulatory (inhibitor) subunit 16B 2 2
MIRT606291 Nrcam neuronal cell adhesion molecule 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-1 Anthocyanin NULL 145858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Caffeic acid NULL 689043 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Catechin approved 9064 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Curcumin NULL 969516 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Ferulic acid NULL 445858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Hesperidin NULL 10621 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Quercetin NULL 5280343 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Galactose NULL 6036 Quantitative real-time PCR lens 22736950 2012 up-regulated
miR-1 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Quantitative real-time PCR myocardial differentiation of mouse ES cells 19521018 2009 down-regulated
miR-1 Sulfonyl-hydrazone-1 (SHZ) NULL NULL Quantitative real-time PCR Murine broblast-derived Induced pluripotent stem cells 21445862 2011 up-regulated
miR-1 Cocaine NULL 446220 Next-generation sequencing ventral striatum 21708909 2011 up-regulated
miR-1 Atorvastatin approved 60823 Quantitative real-time PCR Cardiomyocyte 23860036 2013 down-regualted
miR-1 Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-1 Docosahexaenoic acid NULL 445580 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 Palmitic acid approved 985 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 17beta-estradiol (E2) approved 5757 Microarray MCF-7AKT breast cancer cells 19528081 2009 down-regulated
miR-1 Essential amino acids (EAA) NULL NULL Quantitative real-time PCR skeletal muscle of young adults 19828686 2009 up-regulated
miR-1 Hydrogen peroxide (H2O2) NULL 784 Quantitative real-time PCR Human umbilical vein endothelial cells 21527937 2011 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Microarray apoptosis-resistant breast cancer cells 21971930 2011 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR acute promyelocytic leukemia 22072212 2012 up-regulated
miR-1 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miR-1 Bicalutamide approved 2375 Microarray prostate 22674191 2012 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR cardia 22889704 2012 up-regulated
miR-1 Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 up-regulated
miR-1 Quinidine approved 441074 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 up-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 down-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR post-infarction rat cardiomyocytes 21220930 2011 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 down-regulated
miR-1 Dexamethasone approved 5743 Microarray adrenals and granulosa cells 24205079 2014 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 up-regulated

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