pre-miRNA Information | |
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pre-miRNA | mmu-mir-5114 |
Genomic Coordinates | chr19: 44303171 - 44303231 |
Description | Mus musculus miR-5114 stem-loop |
Comment | None |
RNA Secondary Structure | ![]() |
Mature miRNA Information | |
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Mature miRNA | mmu-miR-5114 |
Sequence | 1| ACUGGAGACGGAAGCUGCAAGA |22 |
Evidence | Experimental |
Experiments | Illumina |
Putative Targets |
Gene Information | |||||||||||||||||||||
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Gene Symbol | Xpo7 | ||||||||||||||||||||
Synonyms | 4930506C02Rik, BB164534, Ranbp16, mKIAA0745 | ||||||||||||||||||||
Description | exportin 7 | ||||||||||||||||||||
Transcript | NM_023045 | ||||||||||||||||||||
Expression | |||||||||||||||||||||
Putative miRNA Targets on Xpo7 | |||||||||||||||||||||
3'UTR of Xpo7 (miRNA target sites are highlighted) |
>Xpo7|NM_023045|3'UTR 1 CAACTCTCGGACTCTACCTTGCAGAGCAGCGTCCCTTTGGTCTGGTCCAGAGGGTGAACAGTTGCAAGGGAGAGAGCCTG 81 GCTGATCCCGGCTCCTTCCTCCAGGGGTATGGGGGAAATGGCAAAAGTCAACCAGCTATTTCCCCAGAAAGTACGGGGAA 161 GTACGGGGTGTGCGTGCACTCACTGAGGGACAGGGCACTGCTGGTTCCTGGGGGACTGGGGTGGGAAGGGGTGGTGGGAG 241 GAGACAGACGCACAGGCATCTGAGCCTCCGGCCGCTCCTGGGGTCACCGTGCAGGGAGAGCCCGGCGCCCTGCCGCAGCC 321 TGCCTTGTATAAACATGTACATTTTTTCATAACGTTTTCAACAAGGTTTATATTGACTCAAGTTTAAAAACAAAAGTGTG 401 ACTGAAAACTTTTTACAGAGTCTAGTGCACCAATGCTGACGTGAGGGGTGATGTATGGCGAGTGAAGAAAATGTGCATTG 481 TGGTGGCCTGAAGCTTTATTGGACAAGGATGTGTGAAAGTGCAGAGATATATTTAGTGACACAGTGTAGAGAGGCAAAAA 561 AGGAAAAAACTCCAAATGTATATTTTTTCTTACTGCCCTTTCCCTCCCCACCCCCACTGATGCGTTCCTGATGCTGTATT 641 AACCTTGTTATTAGGAACTCTGAGCCATGCGGGAGCACCACCCTCCCCATCCATGGATGCTGCCCTGGGCCCCCCAGCCT 721 CCTGCAGTGACAGATAACTCCAGCTAAAGTCTCTGGTGTTCTTATCTCCATCCTTTCTCCCATTTTACTTAACCCTCATC 801 CTCAGAAAGATGCCTCTTGCTATTAAAAGTCGGATTTATGTTTTAGGATTCTTGGTCTCTATAGGGAGACGACAGAGAAT 881 TGAGCCATTTGCTCTCTTGTTGAGCAATTTGCATGAGTCCACCAGAGGCCTAATATGTGTGGCCATAACTTTTGTCTTCC 961 CCAGCCTTTGAGGCAGTGTGTGTGGATGTGTGTGGATATTTATGTGTGTACCCTGCACTCATGAATGTATGAACTGGAGG 1041 AAGTTACTACAGGGGAGGGCTCTCAATAACAAGGTCTACCTAGCATGAAGTATTTAACATTCTCCCTTGAAAAATATACA 1121 TTTTTATAAAATAAAAACCATAATAAATGTTTTGAATATTAAAAAAGAAAAGTGAACCTACAGAGGAACATTGGATGGAG 1201 AAAACTCTTTGCCTTGTACTTTCCCACAACTGCTGCTAGTTATATACATCTCTAGTACAGCTCTTACCCATGGGACATTA 1281 CCAATTAGGTTTTATTTTTATTTTCCTCAATCCTCACAAACAAGCTTATTAATTTTCCTTCTCCTCTGGCGACTGTGTGG 1361 TGAATCTTTTCTTGCGTGATCAGGTTGCGGATAGACTTGTAAGGGTGTTTGCTGCATACAGTGTAAGCATTGTGACCGCC 1441 AATAAACTTCGATGGTTTCTACTGACCTGGTTTCAGCAGTCACGTGTAGTGTGTTCAGGGATGTGTCTCACTGTCAACAC 1521 ATGGAGATATTTAGACAAACATGCTTTTTTTTTTTTTAAGCCAGTAGGTGCAGAAGTCCCTGTGTCTTGTAAAACTAACG 1601 CAGACTGTGTCTGCCTCAGCTCTTCTGACTGGTTCAGCTCACATACTTATAGCATAATGTTCTCCAGAGTTGTCAAAATG 1681 AAGACAGTCTACCTCTTTCCAGGTAATAAAGTGGCGACCTACATATAAGCAGTAGCTGAAGAAAGGCCCATTGGGTTAGT 1761 CCTTACACCTGCCTCTCTGATACAGGCTGGGCTTCATTTATTAGGCCTTGACAAGGTCAGTGGCAAATGTTTTCCCCTGG 1841 AATAGAATGTATAGGCCAAATGAAGCAAATAATGAAGACTAGTTTCTGTGATTTATGGCCCTGTACTGCACAGTGCTTTG 1921 ATTACGAGGGAGCCCATGGCTAAGACCATTGAAAAGCAGGAACAATATAGGGCAGTTGTGGGTATCTTACCTGCAAGGGC 2001 CCAAGAGCCAATCCTGAATTCCTTCTTAGGAGTCCTAGAAAAACCATCCTGGCACATGCTCAGGAGAACCTGGGATACTA 2081 ATTCTGAAGTAAATAAGACAAAGGGACTAGGAAGCTGTCTCACAAACACTAGAAAAACCTTGAAGTAACAGCTGGTCAAC 2161 AAAACCCCAGTGTCCTTCCCTCTCTCCTACGGAAGAGACACTAGGGATGATAGTACCTTTGGTCAGTCACGGCACAGTGC 2241 TTAAGCTTGAGATCTTCCACGGCCCCAAGCTGTGTAAGACTCCGCTGACAAAGGTTTGCCCTGACATAGTAGTGCATGCC 2321 TTTAGCCCCAGCAATTGGGAAGCAAAGATTGGCAAATTGAAGTTTGAGGTCAGGTAGGACTACAAAGAAACCATGGATGG 2401 GGAGAGAGAGAAGGGAAGGTTTTTAGGATTTGGGAAATGAAAACAGGATTAGTTCAATATATACCTTGGCTACACAACAA 2481 AGCCATTCTGGACTACATGGGACCCCACCCCAAACACACATTACTAATTTCATAAAATTTAACCTAATACGAAATTCAGT 2561 TATTTTTCTTTTTACCTTTTTATTTTGTTATTTTTTTTATAGTCCAGTCATTATCTCCCTCCCTTTCTGCCCTCCCACAA 2641 TTCCTCATCCCATTCCTCCCCCCACCCCTCTGAAAGGATGTCCCCACACACCCCTATACTCCACCAGGCCTTCCCATTCC 2721 CTGGGGCCTCAAGTATTAGGTGCATCTTCTCTCATTGAGACCAGACCAGGCAGTCCTCTCCTGTATATGTGTCAGGGGAC 2801 TTGGACCAGCTAGTGTATGCTGCCTGGTTAGTGGCTCAATGTCAGATCTCACTGGGGAGGGGTTCCAGGTTTGTTGAGAC 2881 TACTGGCCCTCCCATGGGCTCTTCAGACCATTGGTCAGGTGTAAGTATCTGCTTCTGTCTCAGTCAGCTGCTGGTAGAGC 2961 ATCTCAGAGGGCAGCTGTGCTATATATAGACTCCTGTTATGCATGTCCTTTTGGGTCTGAGATGCCTCACTCTTGGTGAT 3041 ATTTTCTAGTTCCATCCATTTGCCTGCAAAACTCATGATGTCTTCGTCCTTGATAGCTGAATAGCATTCCATTGTGTAAA 3121 TGAACCACATTATCTGTATTCATTCTTCCGTTGTGGGACATCTAGGTTGTTCCCAGCTTCTGGCTATCACAAATAAGGCC 3201 ACCATGGTCGAGTACATGCCCAAGAGTAGTATAGCTGGGTCTTCAGGTAGATCTATTTCCAATTTTCTGAGGAACCTCCA 3281 GATTGACTTCCAGAGTGGTTGTACCATTTTGCAATCCCACCAGCAATGGAGGAGTGCTCCTCTTTCTCTACATTCTTGCC 3361 AACATGTGATGTCACCTTAGTTTTTGACCTTAGCTAATCTGGTCGGTATAAGGTGGTATCTCAGGGTCATTTTGATTTGT 3441 ATTTCCCTGATCAGTAAGGACTCTGAACATTCAAGTGCTTCTCAGTCATTTGAGATTCCTCTGTTATGAATTCTCTGTTT 3521 AGTTGTATACCCCATTTTTTTCTATTGGGTTGTTTGGTTTTTTTTTGGAGGTTAGCTTCTTGAGTTCTTTATATATTTTG 3601 GATATTAGCGCTCTATCAGATGTGGGGTTAGGGATGAATTTTTTTCCAATCTGTAGGTTGCCGGAAATCCTATACCTTCC 3681 TCTTTTCTCAGATGTCATGGAAAGGTGTATGTTGTGGTTATCTGTGCTGTTCCTGGACACAAGTGTTTCATCTACACAGT 3761 GATATCTGGAATAAGCTACACTGAACCCTAAATTCCCTTACTGATGTTTATTAAATTTTATTGTGTACTATGTATTTATT 3841 AGCTTAACCCAAATAAAGCTAATATTTTCCTACTACAGTGCAAACCAAAGATGGGATTTTACTCAGAGTTGAAATGTTAG 3921 ATTTTTATATTCTGTTTTTGGTTTTATTTTGCTGGTTTTTCAAGACTAAGACTTCTCTGTGTGACAGCTCTGACTGTCCT 4001 GGAACTATATAGACCAGGCTGGCCTCAAACTCAAGAGATATGCCTGCCTCTGCTTCCCAAGTGCTGGGACTAAAGGTGTG 4081 CACCACCAACCACCTCCTGGCTAAGTTCTGTTTTGATATGTGTTCTTATGTAGGCAAGGTTAGATTCAAATTTAATGTAA 4161 CCAAGGTTAGCCTTGAATTTTGGCTCGCCTCCCCTCCTAAGTACTGATATCATAGGCATGTGCCACCATGCCTAGCTAGG 4241 CTTTGAAATTTTAAAAAGTAATGACTTGAGGCAGGTACCTCAATTTTCTAATGGAAAGTGACAGGATGTATTCTCTTTCT 4321 CCAGAGCATAGGCTTACTCTAATTACTCTCTCCTGGAGAGTAATGCTCCAGGATCCTGTAATCAATTTCTTCTAAGCACA 4401 TAGGCCATTTCCAGAATAGCCATGGTCCTAGAACATGGATTAACCTAGATAGCCAAAACAGCACTCAGCAGCCAGTTCTG 4481 TCCAAACCAGAACTGACAAGATCGACAAACCTACATGGTAACCACTAATGTGTCAAACAGCAACGCAAAAATGGAGAGGA 4561 AGAACAGTTGGCTTAACTGTAAAATCCTTGCCACACTTAGGAAAACAAATTTGAAAGAACTAAAATGTGTAGCCCCAACT 4641 ACAGTGAACCATCTATTAGCTCGGTGCGGTATTGTGGGGGAGGGGGGGGCTCTTCCTTTCAGCTATCTTCTAAGTTGATG 4721 ACACTTGAGTGTTTTCCAAACTCTACATGCTGGCTGGTCAGCCACTTTGGTATACCTGAGAAACAATTTCCATTAAAGGA 4801 AGCTGCTACCGGACAATGGGGCTGAGATCATCAGAATGAAGGGTAGAATCGAGTTTGAAAATGACTTTCCTTAGCAGTTC 4881 ATGGTTCCCTGTACCCTTGTCATCTGTTCATTCATGACACTTGGCATCTATGGGCTGGGCCTTTTTGATAGCTACAGAAA 4961 AGGAACCCAGGGAATCAAAACACTTGGTTCAACTCTTCTGTGCAGAACCCATTAATAGTAAACACTGACTTTAAATGTGA 5041 ACAGGGCAGGTTGTAGCCCAGTGGAAGAGTGCTTATTCAGCATGTACAAGCCCTGATTTTAATCCTCAGCAATCCCATTC 5121 CCCAGGATCGGTGAACAAACAGTATAATAAAAGCTGTATACACCGCATTATATACTTTGTGTGTGTGTGTTGTTTTTGGA 5201 GTCAGGGCTTCTCTCTGTAGCATTGGCTGTCCTGGAACTAACTGTAGATTAGGCTGGCCTCAAACTCAGAGATCCTCCTG 5281 CCTTCCACCTCCCAGAGTGTAGGAATTAAAGGCATGCACAACCACCTCTTGGTGCACTTATACTTTTAATTGAAGACTTC 5361 ATAAAAGCATTCAGCACACAGAAACACTTAGTAACCAAACCCATCTCATCACAGAGTTGCAAAGGAGTGCAACCTGAGCA 5441 CTCCTAAGCCACAAATTATGCCAGCCACAAACATCTGGATCAAGGTCCGGAAAACAAGGCCACAGCATAAAAACGTCAAG 5521 AGCTGGATGCAGTGGCTCAGACCTATGATAGCAGCACTTAGAAGGCTGGTGGAGAAACACCACAAATGAACTGAAATCCA 5601 GTCTTGGGACAAAAGGAAGGAAGGAAGGTGATGGTAGAGCCAGGCCAAAAGCACTTGCTGCTCTTGGAAAAGATCAGTGT 5681 AAGCTCCTAGCACCCAAATCAGGCAGCTCACAACTGCCTGTGACTTTAGTTCCATGGGATCCAACAACCTCTCTGGCCCT 5761 GTATTCAAGTACACATATATACGTAATTTTTTTTAGAGAAATTTTTGAATGAATGATAGACATGATCTTATGAAAAAGCT 5841 CAGAGGAGTTGTACTTGGTGGTGTACACCTGTTATCCCAGAAGTAAGGAAACAAAAAAACCAAGGCTGGATAATATGACT 5921 GCCCTCTCCCCCGAACGCTCAGAAGGGCCACTTACACAATACGTATTCCCCACAAGTAGTAAAAAGTGTGGAGAATATAG 6001 CCCAAAGTCAGAAAATGTAAGCCTCTCGGCTCTCAAGAGTAGTTGGTATTAAAACATCCAGGTGTGGAAATGAAAACAAT 6081 TTTAAGAGTACAGCTGGCCATTTCTTCATCTGATTAGCCACCTCTTACATCCAGTCTGAGCACACGTCACAAAGAATATC 6161 GCGTTACAAACTATTGACAAGCTATAAACACCACAAGCAGAACCCTCCCACTCAGCTAGGCAGTTGCCACAGCGGGCTCG 6241 GCGGCCACACCCTTCCACATTCCTTTTACATCTGCAAAACGCGCTTTTGTCAGTGTATACGCGCTATACTCTGTGCTTAT 6321 CTGCAAACCCAAATCTTCCCACCCCTGCTGTCCCCATGTCTCGTTTTAAGACCTGCTCGTTTATTTGAGGTAATCGCAAT 6401 CTTGTCCCTTATCTGTCCCAGCAACCAAACTCTGCTCCTTCCAAGTCAGCACCAAAGGATCAGGTCACGTCCGGATGGAT 6481 GACAAGGATGGGATTTATGGCCGCAGATGCGTTTGCAGAAGACAAGCAGAGGGTGGAAAGAGGTACTGGAGTGAGTGAAG 6561 TTTCCTGCAGAGATCCCAGCCGGACCCACCGCAGCTGACACCAAGCGCAGCGGCTGAAATCAAAGCCTGCGTCTGCGCGG 6641 CCCCGGAAGTGATCCTGCGCGGCCCTTGCGTCGGAAGGAGACGCCGCACCTAGGTTGCATCTGGGCTGCGCAGAGTCCCC 6721 AGACCAGATCCCGCCTTTGTTCCACGCACGCGCAGTAAGGACTCATGTGCCCGGTTGTTTCCGGCTGTAACCGAGGTGCT 6801 AACCTACTCCGGGTATATCTCCCCTGGGCCCTGCTCTTGCAGAAATCCGAGTTTATTTGCATCAGGTCCTTACACCGAAA 6881 TTCACAGCGGCTGTCCCTGTCCCAAAGTTGAAGTGCTGAACCCGTGGAGGAAGTCTCAGACGCAAAGGGGAGCTCTGCAG 6961 TGGACAGCTCCCAGGGAAGCCCTCATCAGACCAAGGAGTCATGACAAAAAGGCGCGAGACATCTTGTGAGGAATAGCAGA 7041 AATAATATGACTAGAGGGCGAATGCAGCCCTCTTTGTATCAGTAAAGAACGGGCCTGCAAGGTTGGGCTTTGATCCTAAA 7121 ATCCGGTTTCTAAACCTCCAAAGACTCCTTAGCAAAGCAGCCTGCCGAGCAAGCCTTTCTTAACTGAGCTTAACGGATGG 7201 GACACGTGACCCAAGGCTAGGGCTGTGAGAAAGGAATTTGAGGAATGTTGAGAGGTGGACTCAAAACTTTGTGATCAGCT 7281 GAATTCAAACGATTTTCCTGTGATTCCCTAGTTCCAGAACAGAGTGACACCTGATTGGGAAAGAGAAAGCTCTGGGCAAG 7361 ACTAGGGTGTGGGTTGTAAAGAAGATAGGACACAGGCTGACCCTGAGAGAAGGTCCTATCCTTGAAGATATCAAAACATT 7441 TCTGCAAAATGAATACCAATCACACAGAAACTCAGAAGAGGAAGTCATCATCTCACTAAGCCTCAAATAAAAAGCCAAAG 7521 ACATAAAGGAATAAAATAACATTTAGTGAGCTGGAGAGGTAATTTGCAGTTGAAAGCTCTGGCTGCTCTTGTAGAGACCC 7601 TACATTCCATCCTTAGGGCCCACATGTTGGCTCACAATGGTTCTGTCACTCTAGTTCCAGGGGATTCAACACCTTTTTCT 7681 GGCCTCCTCGAGCCAGAGGCAATATACATTAGGCACAGACTTAGAAAACACCCATATACGTAAAATATTTTTCGAACTTA 7761 AGGCTTCTAGACTATTATCTCTTATGAATTTAGATGCATTCTTACCAAAATGTATGTCTGAATCAGTATATAAAAAGGAA 7841 TGATACATCATGATTAAGTGGCTGAATCTAGAATGCAATGTTGATTTAATTTTCAAAAGAATATGGCTATAGTGATGGTT 7921 CAGCAGTTAAGAACTTGCTGCTCTTCCAGAGAGCACTGAGTTCAATTCCCAGCACCCACATGGTTGCTTACAACTATCTG 8001 TAACTCCAGTTCCACATGATCTAACTACCTCTTCTGGCCTCCGTGGGCACTAGCCACTGAAGTGCTCAGCCATGCCATGC 8081 AGACAAAACACCTATACACATAATTTTCTCTTTTTTTAAAGTTGTATTTGTTTTATTATATGTAAGTACAATGTAGCTGT 8161 CTTCAGACACTCCAGAAGAGGGCATCAGATCCCATTACAGATGGATGTGAGCCACCATGTGGTTGCTGGGATCTGAACTC 8241 AGGACCTTTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCTACACATAATTTTCTATAAAAAGCA 8321 TAACTGTAACACTGCATGAACTAAGGAAAAATTAGAAATCATCTCAGTAGATATATAAAAAATATATATAATGAAATTTT 8401 AAACTCACTAAACTTCAAAAAAAAAAGATATTATGCTAGTGATATTGCTCTGTTGGCAGAGTGCCTGCCTAGCACACAGG 8481 AAGCCCTGGATTCAGTTCCTAGCACACCAAGCCCAACACAGAAAATTAGAAGTCCAAGGTCATTCTCAGCTACATAGTAA 8561 GTTCAAGGCCAACTTAGGGTTTCTTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTTGGGTTT 8641 TTTGTTTGGTTGGTTTGGGGTTTGGTATTTTGTTTTTTCAAAACAGGCTTTCTCTTTGTAATCTTAGTTGTCCTAGAACT 8721 TGCTCTGGAGACCAGGCTGGCCTTAAACTCATTGAGATCTACCTGTTTATACATCCCAAATAATAACTCAGCAAAACTTT 8801 TTGTGAGCACTAGTATTGGAGAAAACCAACTCAGGGCCTTGTACTTGGTGCCCAGTATAATCCCAACAACACATGAGAAC 8881 ATTAAAATGGACTTTTTCCCATTTAAAGAGAGCAAAGGGCTATCTGTGGTAGCACAGACCTGCAGTCCTATCACTTGGAA 8961 GGCTGAGGCAGGAGGGCTCAAGGTTCAAGGCCATTCTGTGTTCTCTATCAGAAGACTGTCTTGGGCAGAAGAGAGGGAGA 9041 AGGGGAGGAGGCAGGCAGGCCAGGCTTTAGTACACACCTTTAAACCAAGCACTCAGGGAGCAGAAGGAACTCTCTTTGAG 9121 TTCAGAGCCATCCTGATCTACATAGCTAGTTCCAGGCCAACCAGAGCTACATAGTGAGATACTCTTTCAGAAAGAGAGTG 9201 GATGTTTTACCAAAATGTCCTAGCCAAGTGTATGCAGCTCAGAAAGAAAAAGCACATGGGTCTCAAAGGAAAGGGGAAAT 9281 CTTGTCTTTATTCTCAGATGTCATGATTTAGAGTACAAAAAAAAAAAAAATCCACTGAAACTACTAAGTTGAATTAAGCA 9361 AAACCGCAGAAGATAATATCTATTATAACATCAATATATTAAATTGTTCTCAAGTTTTTAATTTTCAAGTTATACAATGA 9441 GTTTCATCATGGTACTTCATATAAATGTGCAGAAGTTTGTCCTTTGTTCCTCTTCTCTGTGTCCCCTCCACATCAGCAAC 9521 CAGAGAAAAGCCAGCCATAACATGTTTAACATGCCCAAGACCCTAGATTTGCCTATGTTTGTGCTATACCAATGGGGGGG 9601 GGGGGGCAGATGAAGATTATTTGTATGTACTAAAAACAATTAGATTAAAATTTAAAATATATACTATTTTTATGGCATCC 9681 AAGAACATGAAATACACATGAGTAATTATAGATCTCTGCTGAAATCTATAGAATAATGTCAAGGAAATCTAGACTGTAAC 9761 CTGCTCATGACACAAAACACTGTGAGGTTGATTATCTTCACACTGCATTCTTTGGTGGTTTGGTGTTGTTATAGAGACAG 9841 AACATACGTGCTAAGAAAGCACATTACCATGAAATTACATATCCAGCCCCTGACATTGATCGCTATATTCAATAAAATCT 9921 GAAAATTTTCAAATTTTATTGAATTTTTTTGTACTTTAAATTTTTATTGGAGTATATTCATTGTACATAGAGATGGGTTT 10001 CATAACGGCATTTTTTTGAGTCAGTTTCTCACTATGTAGCTCTGGTGTCCTGGACTTTTCCAATGCAGATCAGGCCTGCC 10081 TCTGCCTCTGAGTGTGGGATTAAAGGTGGTGCCACTTCATCCAGCGCCATTAAAACACTTTGATTTATTTATAGATCTCT 10161 CCAACAGAAATTTGAAAGGGAGCCAGGGAATAGTGGCACACATCTTTGATCCCAGCATTCAGGAGACAGTGGCAGGTGGA 10241 TCTCTGAGTTGGAGGCCAACCTAGACTACAGAACAGCCAGGGCTACACAGAGAAGCCCTGTCTTGGGGTAGGGAGAAGTA 10321 GGGATTCAAAGGACTTTTTGTGGAAACTAATATATCAATTGTATATGTGAAAATGGAAAAATCGGAGATAGCTACAAGTC 10401 TTCTTTCTGATTTTTTTTATATTTATTTTATGTGTATGAACGTTTTACCTATACATACGTGTATGCACCACATAATTTGC 10481 CTGCAAGGTCAGAAGAAGGCATCAGATCTCCTGGAACTGAAGGTACAGAGAGTTAAGCTATCCTGTTGGTGCTGGGAACA 10561 CCTCCACTGATGAGCCATCTTTCCAGCCACTACAGCCTTTTCTTTTGGTGCTCAGGGTGGAAGCCAGGGCCTTTCGCATA 10641 AAAGCCAAGTGCTCTACCACTAAACTACACCCTCAGCCTTAAAATATTTGTTTAAAATAAAAAGATCAGCTCAAGCATTC 10721 ATGCTGCCTGATCCGATGATCTACTATCAAACTAGGGTGCCTCTAGCTTGAGGGCAGAAATGCAGACCTATGAAAAGGAA 10801 CCAGTCCAGAAAGCCTGACCGACAGGATCAATAGACAACAAAGATGCCTCGGTCAGTGTACAGGAAAGGATGGTCTTTTA 10881 CAGGATTGGTGTTGGGGGACTTGCATTTGGGGAAAGCAGGAGGGGAGGGATTAGCAGTGAACCTTTCCTACTGTATAAAT 10961 AAGAATGGACTCAAAAGAATGTAGTAGCATATGCCTGGAGTCCCAGATACTCAGGAGGCGGAGACAAATGCTCACAAGTT 11041 CAATGCCAGTCTTTACAATATGTGACACTGTTGTGGAGTTCATGACCCCTGGGGAAAAAAACCACACTCAGTCCAGATTG 11121 TAATTAGTTAAATCTATTGAAGCTCTAGCAGGTCAACAATCCCTGACCCAAAGGAGATTGCTATGTGAAGGGAGTAAGGG 11201 AAGGGTTTTAAAAGGCAAAGGCCACCAGACCTTGAATATCTGCACAAGCAAGCCAAGAGCTATTCTGTCTGCCAAGATTA 11281 GGTACCCAAGGCAACCTTAAAATAGTCCTTGAATGTCTGCATAAGCAAGTTACAGAGGCCAAAAGGCAGTCATATCATAA 11361 CAAGTAGATGGCACAGCTGGACTCGCCTGTGTAAAGGGTGACTACATCTGGGTTACGGGAAAGTTATCTTCCAGATATCA 11441 GAGTCAAAGACAAATGACCAGTGGGTGTCAGAACGGATGCCTGGCATAAAAGGGAGTTTCTTTAGCCATCACAGCATCAT 11521 CCTAGAAAAGGTCATTCAAAATCTATCATACACCTAAGAATCATATACCTAAGAATCAAAGTTAAAATCAGAGTCAGGTG 11601 AGGAGGTGGAGGGTCACACCTATAATTCCAACACTGGGGAGGGAGAGGTAAAAGAATCTTTTGAGTTCAAAAACAGCCTT 11681 GCTACATACCCAGACCTTGCTACATACCCAGACCTTGTTTTGGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAG Target sites
Provided by authors
Predicted by miRanda
DRVs
SNPs
DRVs & SNPs
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miRNA-target interactions (Predicted by miRanda) |
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Experimental Support 1 for Functional miRNA-Target Interaction | |
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miRNA:Target | ---- |
Validation Method |
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Conditions | mESCs |
Location of target site | 3'UTR |
Tools used in this research | TargetScan , miRTarCLIP , Piranha |
Original Description (Extracted from the article) |
...
HITS-CLIP data was present in GSM622573. RNA binding protein: AGO2. Condition:KO1
... - Leung AK; Young AG; Bhutkar A; Zheng GX; et al., 2011, Nature structural & molecular biology. |
Article |
- Leung AK; Young AG; Bhutkar A; Zheng GX; et al. - Nature structural & molecular biology, 2011
MicroRNAs (miRNAs) are 19-22-nucleotide noncoding RNAs that post-transcriptionally regulate mRNA targets. We have identified endogenous miRNA binding sites in mouse embryonic stem cells (mESCs), by performing photo-cross-linking immunoprecipitation using antibodies to Argonaute (Ago2) followed by deep sequencing of RNAs (CLIP-seq). We also performed CLIP-seq in Dicer(-)/(-) mESCs that lack mature miRNAs, allowing us to define whether the association of Ago2 with the identified sites was miRNA dependent. A significantly enriched motif, GCACUU, was identified only in wild-type mESCs in 3' untranslated and coding regions. This motif matches the seed of a miRNA family that constitutes ~68% of the mESC miRNA population. Unexpectedly, a G-rich motif was enriched in sequences cross-linked to Ago2 in both the presence and absence of miRNAs. Expression analysis and reporter assays confirmed that the seed-related motif confers miRNA-directed regulation on host mRNAs and that the G-rich motif can modulate this regulation.
LinkOut: [PMID: 21258322]
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CLIP-seq Support 1 for dataset GSM4656410 | |
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Method / RBP | HITS-CLIP / AGO |
Cell line / Condition | mouse liver / e185 rep2 |
Location of target site | NM_023045 | 3UTR | AGCUGUCUUCAGACACUCCAGAAGAGG |
Tools used in this analysis | TargetScan, miRTarCLIP, and Piranha |
Accession Series | GSE153876 |
CLIP-seq Viewer | Link |
CLIP-seq Support 2 for dataset GSM4751756 | |
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Method / RBP | HITS-CLIP / AGO |
Cell line / Condition | adipose tissue / RNA sequencing of iBAT 1 |
Location of target site | NM_023045 | 3UTR | AGUACAAUGUAGCUGUCUUCAGACACUCCAGAAGAGG |
Tools used in this analysis | TargetScan, miRTarCLIP, and Piranha |
Accession Series | GSE142677 |
CLIP-seq Viewer | Link |
CLIP-seq Support 3 for dataset GSM4751757 | |
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Method / RBP | HITS-CLIP / AGO |
Cell line / Condition | adipose tissue / RNA sequencing of iBAT 2 |
Location of target site | NM_023045 | 3UTR | AGUACAAUGUAGCUGUCUUCAGACACUCCAGAAGAGGGCAUCAGAUCCCAUUACAGAUGG |
Tools used in this analysis | TargetScan, miRTarCLIP, and Piranha |
Accession Series | GSE142677 |
CLIP-seq Viewer | Link |
CLIP-seq Support 4 for dataset GSM4751758 | |
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Method / RBP | HITS-CLIP / AGO |
Cell line / Condition | adipose tissue / RNA sequencing of iBAT 3 |
Location of target site | NM_023045 | 3UTR | AGUACAAUGUAGCUGUCUUCAGACACUCCAGAAGAGGGCAUCAGAUCCCAUUACAGAUGG |
Tools used in this analysis | TargetScan, miRTarCLIP, and Piranha |
Accession Series | GSE142677 |
CLIP-seq Viewer | Link |
CLIP-seq Support 5 for dataset GSM4751759 | |
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Method / RBP | HITS-CLIP / AGO |
Cell line / Condition | adipose tissue / RNA sequencing of iBAT 4 |
Location of target site | NM_023045 | 3UTR | GUACAAUGUAGCUGUCUUCAGACACUCCAGAAGAGGGCAUCAGAUCCCAUUACAGAUGG |
Tools used in this analysis | TargetScan, miRTarCLIP, and Piranha |
Accession Series | GSE142677 |
CLIP-seq Viewer | Link |
CLIP-seq Support 6 for dataset GSM4751760 | |
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Method / RBP | HITS-CLIP / AGO |
Cell line / Condition | adipose tissue / RNA sequencing of eWAT 1 |
Location of target site | NM_023045 | 3UTR | AGUACAAUGUAGCUGUCUUCAGACACUCCAGAAGAGG |
Tools used in this analysis | TargetScan, miRTarCLIP, and Piranha |
Accession Series | GSE142677 |
CLIP-seq Viewer | Link |
CLIP-seq Support 7 for dataset GSM4751761 | |
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Method / RBP | HITS-CLIP / AGO |
Cell line / Condition | adipose tissue / RNA sequencing of eWAT 2 |
Location of target site | NM_023045 | 3UTR | GUACAAUGUAGCUGUCUUCAGACACUCCAGAAGAGG |
Tools used in this analysis | TargetScan, miRTarCLIP, and Piranha |
Accession Series | GSE142677 |
CLIP-seq Viewer | Link |
CLIP-seq Support 8 for dataset GSM4751762 | |
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Method / RBP | HITS-CLIP / AGO |
Cell line / Condition | adipose tissue / RNA sequencing of eWAT 3 |
Location of target site | NM_023045 | 3UTR | GUACAAUGUAGCUGUCUUCAGACACUCCAGAAGAGGGCAUCAGAUCCCAUUACAGAUGG |
Tools used in this analysis | TargetScan, miRTarCLIP, and Piranha |
Accession Series | GSE142677 |
CLIP-seq Viewer | Link |
CLIP-seq Support 9 for dataset GSM4751763 | |
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Method / RBP | HITS-CLIP / AGO |
Cell line / Condition | adipose tissue / RNA sequencing of eWAT 4 |
Location of target site | NM_023045 | 3UTR | AUUAUAUGUAAGUACAAUGUAGCUGUCUUCAGACACUCCAGAAGAGGGCAUCAGAUCCCAUUACAGAUGG |
Tools used in this analysis | TargetScan, miRTarCLIP, and Piranha |
Accession Series | GSE142677 |
CLIP-seq Viewer | Link |
CLIP-seq Support 10 for dataset GSM622573 | |
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Method / RBP | HITS-CLIP / AGO2 |
Cell line / Condition | mESCs / KO1 |
Location of target site | NM_023045 | 3UTR | AUGUGGUUGCUGGGAUCUGAACUCAGGACCUUUGGAAGAGCAGUCAGUGCUCUUAACCACUGAGCCAUCUCUCCAGCCCU |
Tools used in this analysis | TargetScan, miRTarCLIP, and Piranha |
Article / Accession Series | PMID: 21258322 / GSE25310 |
CLIP-seq Viewer | Link |
39 mmu-miR-5114 Target Genes:
Functional analysis:
ID![]() |
Target | Description | Validation methods |
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Strong evidence | Less strong evidence | |||||||||||
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MIRT577166 | Madd | MAP-kinase activating death domain | ![]() |
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2 | 12 | ||||||
MIRT580377 | Tmem206 | transmembrane protein 206 | ![]() |
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2 | 4 | ||||||
MIRT580729 | Srrm4 | serine/arginine repetitive matrix 4 | ![]() |
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2 | 2 | ||||||
MIRT581165 | Sec23ip | Sec23 interacting protein | ![]() |
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2 | 2 | ||||||
MIRT581310 | Rnf150 | ring finger protein 150 | ![]() |
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2 | 4 | ||||||
MIRT581568 | Prtg | protogenin | ![]() |
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2 | 2 | ||||||
MIRT582280 | Nav2 | neuron navigator 2 | ![]() |
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2 | 2 | ||||||
MIRT582511 | March5 | membrane-associated ring finger (C3HC4) 5 | ![]() |
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2 | 4 | ||||||
MIRT584183 | Cpeb3 | cytoplasmic polyadenylation element binding protein 3 | ![]() |
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2 | 2 | ||||||
MIRT584252 | Cmtm6 | CKLF-like MARVEL transmembrane domain containing 6 | ![]() |
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2 | 2 | ||||||
MIRT584403 | Cd63 | CD63 antigen | ![]() |
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2 | 2 | ||||||
MIRT586848 | Ikbkg | inhibitor of kappaB kinase gamma | ![]() |
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2 | 4 | ||||||
MIRT586939 | H2-T24 | histocompatibility 2, T region locus 24 | ![]() |
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2 | 4 | ||||||
MIRT587266 | Fam161b | family with sequence similarity 161, member B | ![]() |
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2 | 2 | ||||||
MIRT588386 | Zfp113 | zinc finger protein 113 | ![]() |
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2 | 2 | ||||||
MIRT590219 | Dync1li2 | dynein, cytoplasmic 1 light intermediate chain 2 | ![]() |
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2 | 4 | ||||||
MIRT592159 | Paxip1 | PAX interacting (with transcription-activation domain) protein 1 | ![]() |
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2 | 2 | ||||||
MIRT592188 | Nanog | Nanog homeobox | ![]() |
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2 | 4 | ||||||
MIRT593309 | Rmnd5a | required for meiotic nuclear division 5 homolog A | ![]() |
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2 | 2 | ||||||
MIRT594051 | 1200014J11Rik | nuclear cap binding subunit 3 | ![]() |
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2 | 2 | ||||||
MIRT594495 | Cspg4 | chondroitin sulfate proteoglycan 4 | ![]() |
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2 | 2 | ||||||
MIRT595572 | Mtf1 | metal response element binding transcription factor 1 | ![]() |
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2 | 2 | ||||||
MIRT597122 | Svopl | SV2 related protein homolog (rat)-like | ![]() |
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2 | 2 | ||||||
MIRT598947 | Ggps1 | geranylgeranyl diphosphate synthase 1 | ![]() |
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2 | 2 | ||||||
MIRT599498 | Ccdc78 | coiled-coil domain containing 78 | ![]() |
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2 | 2 | ||||||
MIRT601067 | Cdc14b | CDC14 cell division cycle 14B | ![]() |
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2 | 2 | ||||||
MIRT601902 | Padi2 | peptidyl arginine deiminase, type II | ![]() |
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2 | 2 | ||||||
MIRT602607 | Chrna1 | cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle) | ![]() |
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2 | 2 | ||||||
MIRT602771 | Armc2 | armadillo repeat containing 2 | ![]() |
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2 | 2 | ||||||
MIRT602877 | 4931428F04Rik | RIKEN cDNA 4931428F04 gene | ![]() |
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2 | 2 | ||||||
MIRT602958 | Xpo7 | exportin 7 | ![]() |
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2 | 2 | ||||||
MIRT603304 | Slc4a7 | solute carrier family 4, sodium bicarbonate cotransporter, member 7 | ![]() |
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2 | 2 | ||||||
MIRT603315 | Slc35d2 | solute carrier family 35, member D2 | ![]() |
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2 | 2 | ||||||
MIRT603389 | Sgol2 | shugoshin 2A | ![]() |
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2 | 2 | ||||||
MIRT605052 | Efr3b | EFR3 homolog B | ![]() |
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2 | 2 | ||||||
MIRT605054 | Arhgef39 | Rho guanine nucleotide exchange factor (GEF) 39 | ![]() |
1 | 1 | |||||||
MIRT605412 | T2 | brachyury 2 | ![]() |
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2 | 2 | ||||||
MIRT605550 | Ppp1r16b | protein phosphatase 1, regulatory (inhibitor) subunit 16B | ![]() |
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2 | 2 | ||||||
MIRT606407 | Glrx2 | glutaredoxin 2 (thioltransferase) | ![]() |
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2 | 2 |