pre-miRNA Information
pre-miRNA mmu-mir-5114   
Genomic Coordinates chr19: 44303171 - 44303231
Description Mus musculus miR-5114 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA mmu-miR-5114
Sequence 1| ACUGGAGACGGAAGCUGCAAGA |22
Evidence Experimental
Experiments Illumina
Putative Targets

Gene Information
Gene Symbol Xpo7   
Synonyms 4930506C02Rik, BB164534, Ranbp16, mKIAA0745
Description exportin 7
Transcript NM_023045   
Expression
Putative miRNA Targets on Xpo7
3'UTR of Xpo7
(miRNA target sites are highlighted)
>Xpo7|NM_023045|3'UTR
   1 CAACTCTCGGACTCTACCTTGCAGAGCAGCGTCCCTTTGGTCTGGTCCAGAGGGTGAACAGTTGCAAGGGAGAGAGCCTG
  81 GCTGATCCCGGCTCCTTCCTCCAGGGGTATGGGGGAAATGGCAAAAGTCAACCAGCTATTTCCCCAGAAAGTACGGGGAA
 161 GTACGGGGTGTGCGTGCACTCACTGAGGGACAGGGCACTGCTGGTTCCTGGGGGACTGGGGTGGGAAGGGGTGGTGGGAG
 241 GAGACAGACGCACAGGCATCTGAGCCTCCGGCCGCTCCTGGGGTCACCGTGCAGGGAGAGCCCGGCGCCCTGCCGCAGCC
 321 TGCCTTGTATAAACATGTACATTTTTTCATAACGTTTTCAACAAGGTTTATATTGACTCAAGTTTAAAAACAAAAGTGTG
 401 ACTGAAAACTTTTTACAGAGTCTAGTGCACCAATGCTGACGTGAGGGGTGATGTATGGCGAGTGAAGAAAATGTGCATTG
 481 TGGTGGCCTGAAGCTTTATTGGACAAGGATGTGTGAAAGTGCAGAGATATATTTAGTGACACAGTGTAGAGAGGCAAAAA
 561 AGGAAAAAACTCCAAATGTATATTTTTTCTTACTGCCCTTTCCCTCCCCACCCCCACTGATGCGTTCCTGATGCTGTATT
 641 AACCTTGTTATTAGGAACTCTGAGCCATGCGGGAGCACCACCCTCCCCATCCATGGATGCTGCCCTGGGCCCCCCAGCCT
 721 CCTGCAGTGACAGATAACTCCAGCTAAAGTCTCTGGTGTTCTTATCTCCATCCTTTCTCCCATTTTACTTAACCCTCATC
 801 CTCAGAAAGATGCCTCTTGCTATTAAAAGTCGGATTTATGTTTTAGGATTCTTGGTCTCTATAGGGAGACGACAGAGAAT
 881 TGAGCCATTTGCTCTCTTGTTGAGCAATTTGCATGAGTCCACCAGAGGCCTAATATGTGTGGCCATAACTTTTGTCTTCC
 961 CCAGCCTTTGAGGCAGTGTGTGTGGATGTGTGTGGATATTTATGTGTGTACCCTGCACTCATGAATGTATGAACTGGAGG
1041 AAGTTACTACAGGGGAGGGCTCTCAATAACAAGGTCTACCTAGCATGAAGTATTTAACATTCTCCCTTGAAAAATATACA
1121 TTTTTATAAAATAAAAACCATAATAAATGTTTTGAATATTAAAAAAGAAAAGTGAACCTACAGAGGAACATTGGATGGAG
1201 AAAACTCTTTGCCTTGTACTTTCCCACAACTGCTGCTAGTTATATACATCTCTAGTACAGCTCTTACCCATGGGACATTA
1281 CCAATTAGGTTTTATTTTTATTTTCCTCAATCCTCACAAACAAGCTTATTAATTTTCCTTCTCCTCTGGCGACTGTGTGG
1361 TGAATCTTTTCTTGCGTGATCAGGTTGCGGATAGACTTGTAAGGGTGTTTGCTGCATACAGTGTAAGCATTGTGACCGCC
1441 AATAAACTTCGATGGTTTCTACTGACCTGGTTTCAGCAGTCACGTGTAGTGTGTTCAGGGATGTGTCTCACTGTCAACAC
1521 ATGGAGATATTTAGACAAACATGCTTTTTTTTTTTTTAAGCCAGTAGGTGCAGAAGTCCCTGTGTCTTGTAAAACTAACG
1601 CAGACTGTGTCTGCCTCAGCTCTTCTGACTGGTTCAGCTCACATACTTATAGCATAATGTTCTCCAGAGTTGTCAAAATG
1681 AAGACAGTCTACCTCTTTCCAGGTAATAAAGTGGCGACCTACATATAAGCAGTAGCTGAAGAAAGGCCCATTGGGTTAGT
1761 CCTTACACCTGCCTCTCTGATACAGGCTGGGCTTCATTTATTAGGCCTTGACAAGGTCAGTGGCAAATGTTTTCCCCTGG
1841 AATAGAATGTATAGGCCAAATGAAGCAAATAATGAAGACTAGTTTCTGTGATTTATGGCCCTGTACTGCACAGTGCTTTG
1921 ATTACGAGGGAGCCCATGGCTAAGACCATTGAAAAGCAGGAACAATATAGGGCAGTTGTGGGTATCTTACCTGCAAGGGC
2001 CCAAGAGCCAATCCTGAATTCCTTCTTAGGAGTCCTAGAAAAACCATCCTGGCACATGCTCAGGAGAACCTGGGATACTA
2081 ATTCTGAAGTAAATAAGACAAAGGGACTAGGAAGCTGTCTCACAAACACTAGAAAAACCTTGAAGTAACAGCTGGTCAAC
2161 AAAACCCCAGTGTCCTTCCCTCTCTCCTACGGAAGAGACACTAGGGATGATAGTACCTTTGGTCAGTCACGGCACAGTGC
2241 TTAAGCTTGAGATCTTCCACGGCCCCAAGCTGTGTAAGACTCCGCTGACAAAGGTTTGCCCTGACATAGTAGTGCATGCC
2321 TTTAGCCCCAGCAATTGGGAAGCAAAGATTGGCAAATTGAAGTTTGAGGTCAGGTAGGACTACAAAGAAACCATGGATGG
2401 GGAGAGAGAGAAGGGAAGGTTTTTAGGATTTGGGAAATGAAAACAGGATTAGTTCAATATATACCTTGGCTACACAACAA
2481 AGCCATTCTGGACTACATGGGACCCCACCCCAAACACACATTACTAATTTCATAAAATTTAACCTAATACGAAATTCAGT
2561 TATTTTTCTTTTTACCTTTTTATTTTGTTATTTTTTTTATAGTCCAGTCATTATCTCCCTCCCTTTCTGCCCTCCCACAA
2641 TTCCTCATCCCATTCCTCCCCCCACCCCTCTGAAAGGATGTCCCCACACACCCCTATACTCCACCAGGCCTTCCCATTCC
2721 CTGGGGCCTCAAGTATTAGGTGCATCTTCTCTCATTGAGACCAGACCAGGCAGTCCTCTCCTGTATATGTGTCAGGGGAC
2801 TTGGACCAGCTAGTGTATGCTGCCTGGTTAGTGGCTCAATGTCAGATCTCACTGGGGAGGGGTTCCAGGTTTGTTGAGAC
2881 TACTGGCCCTCCCATGGGCTCTTCAGACCATTGGTCAGGTGTAAGTATCTGCTTCTGTCTCAGTCAGCTGCTGGTAGAGC
2961 ATCTCAGAGGGCAGCTGTGCTATATATAGACTCCTGTTATGCATGTCCTTTTGGGTCTGAGATGCCTCACTCTTGGTGAT
3041 ATTTTCTAGTTCCATCCATTTGCCTGCAAAACTCATGATGTCTTCGTCCTTGATAGCTGAATAGCATTCCATTGTGTAAA
3121 TGAACCACATTATCTGTATTCATTCTTCCGTTGTGGGACATCTAGGTTGTTCCCAGCTTCTGGCTATCACAAATAAGGCC
3201 ACCATGGTCGAGTACATGCCCAAGAGTAGTATAGCTGGGTCTTCAGGTAGATCTATTTCCAATTTTCTGAGGAACCTCCA
3281 GATTGACTTCCAGAGTGGTTGTACCATTTTGCAATCCCACCAGCAATGGAGGAGTGCTCCTCTTTCTCTACATTCTTGCC
3361 AACATGTGATGTCACCTTAGTTTTTGACCTTAGCTAATCTGGTCGGTATAAGGTGGTATCTCAGGGTCATTTTGATTTGT
3441 ATTTCCCTGATCAGTAAGGACTCTGAACATTCAAGTGCTTCTCAGTCATTTGAGATTCCTCTGTTATGAATTCTCTGTTT
3521 AGTTGTATACCCCATTTTTTTCTATTGGGTTGTTTGGTTTTTTTTTGGAGGTTAGCTTCTTGAGTTCTTTATATATTTTG
3601 GATATTAGCGCTCTATCAGATGTGGGGTTAGGGATGAATTTTTTTCCAATCTGTAGGTTGCCGGAAATCCTATACCTTCC
3681 TCTTTTCTCAGATGTCATGGAAAGGTGTATGTTGTGGTTATCTGTGCTGTTCCTGGACACAAGTGTTTCATCTACACAGT
3761 GATATCTGGAATAAGCTACACTGAACCCTAAATTCCCTTACTGATGTTTATTAAATTTTATTGTGTACTATGTATTTATT
3841 AGCTTAACCCAAATAAAGCTAATATTTTCCTACTACAGTGCAAACCAAAGATGGGATTTTACTCAGAGTTGAAATGTTAG
3921 ATTTTTATATTCTGTTTTTGGTTTTATTTTGCTGGTTTTTCAAGACTAAGACTTCTCTGTGTGACAGCTCTGACTGTCCT
4001 GGAACTATATAGACCAGGCTGGCCTCAAACTCAAGAGATATGCCTGCCTCTGCTTCCCAAGTGCTGGGACTAAAGGTGTG
4081 CACCACCAACCACCTCCTGGCTAAGTTCTGTTTTGATATGTGTTCTTATGTAGGCAAGGTTAGATTCAAATTTAATGTAA
4161 CCAAGGTTAGCCTTGAATTTTGGCTCGCCTCCCCTCCTAAGTACTGATATCATAGGCATGTGCCACCATGCCTAGCTAGG
4241 CTTTGAAATTTTAAAAAGTAATGACTTGAGGCAGGTACCTCAATTTTCTAATGGAAAGTGACAGGATGTATTCTCTTTCT
4321 CCAGAGCATAGGCTTACTCTAATTACTCTCTCCTGGAGAGTAATGCTCCAGGATCCTGTAATCAATTTCTTCTAAGCACA
4401 TAGGCCATTTCCAGAATAGCCATGGTCCTAGAACATGGATTAACCTAGATAGCCAAAACAGCACTCAGCAGCCAGTTCTG
4481 TCCAAACCAGAACTGACAAGATCGACAAACCTACATGGTAACCACTAATGTGTCAAACAGCAACGCAAAAATGGAGAGGA
4561 AGAACAGTTGGCTTAACTGTAAAATCCTTGCCACACTTAGGAAAACAAATTTGAAAGAACTAAAATGTGTAGCCCCAACT
4641 ACAGTGAACCATCTATTAGCTCGGTGCGGTATTGTGGGGGAGGGGGGGGCTCTTCCTTTCAGCTATCTTCTAAGTTGATG
4721 ACACTTGAGTGTTTTCCAAACTCTACATGCTGGCTGGTCAGCCACTTTGGTATACCTGAGAAACAATTTCCATTAAAGGA
4801 AGCTGCTACCGGACAATGGGGCTGAGATCATCAGAATGAAGGGTAGAATCGAGTTTGAAAATGACTTTCCTTAGCAGTTC
4881 ATGGTTCCCTGTACCCTTGTCATCTGTTCATTCATGACACTTGGCATCTATGGGCTGGGCCTTTTTGATAGCTACAGAAA
4961 AGGAACCCAGGGAATCAAAACACTTGGTTCAACTCTTCTGTGCAGAACCCATTAATAGTAAACACTGACTTTAAATGTGA
5041 ACAGGGCAGGTTGTAGCCCAGTGGAAGAGTGCTTATTCAGCATGTACAAGCCCTGATTTTAATCCTCAGCAATCCCATTC
5121 CCCAGGATCGGTGAACAAACAGTATAATAAAAGCTGTATACACCGCATTATATACTTTGTGTGTGTGTGTTGTTTTTGGA
5201 GTCAGGGCTTCTCTCTGTAGCATTGGCTGTCCTGGAACTAACTGTAGATTAGGCTGGCCTCAAACTCAGAGATCCTCCTG
5281 CCTTCCACCTCCCAGAGTGTAGGAATTAAAGGCATGCACAACCACCTCTTGGTGCACTTATACTTTTAATTGAAGACTTC
5361 ATAAAAGCATTCAGCACACAGAAACACTTAGTAACCAAACCCATCTCATCACAGAGTTGCAAAGGAGTGCAACCTGAGCA
5441 CTCCTAAGCCACAAATTATGCCAGCCACAAACATCTGGATCAAGGTCCGGAAAACAAGGCCACAGCATAAAAACGTCAAG
5521 AGCTGGATGCAGTGGCTCAGACCTATGATAGCAGCACTTAGAAGGCTGGTGGAGAAACACCACAAATGAACTGAAATCCA
5601 GTCTTGGGACAAAAGGAAGGAAGGAAGGTGATGGTAGAGCCAGGCCAAAAGCACTTGCTGCTCTTGGAAAAGATCAGTGT
5681 AAGCTCCTAGCACCCAAATCAGGCAGCTCACAACTGCCTGTGACTTTAGTTCCATGGGATCCAACAACCTCTCTGGCCCT
5761 GTATTCAAGTACACATATATACGTAATTTTTTTTAGAGAAATTTTTGAATGAATGATAGACATGATCTTATGAAAAAGCT
5841 CAGAGGAGTTGTACTTGGTGGTGTACACCTGTTATCCCAGAAGTAAGGAAACAAAAAAACCAAGGCTGGATAATATGACT
5921 GCCCTCTCCCCCGAACGCTCAGAAGGGCCACTTACACAATACGTATTCCCCACAAGTAGTAAAAAGTGTGGAGAATATAG
6001 CCCAAAGTCAGAAAATGTAAGCCTCTCGGCTCTCAAGAGTAGTTGGTATTAAAACATCCAGGTGTGGAAATGAAAACAAT
6081 TTTAAGAGTACAGCTGGCCATTTCTTCATCTGATTAGCCACCTCTTACATCCAGTCTGAGCACACGTCACAAAGAATATC
6161 GCGTTACAAACTATTGACAAGCTATAAACACCACAAGCAGAACCCTCCCACTCAGCTAGGCAGTTGCCACAGCGGGCTCG
6241 GCGGCCACACCCTTCCACATTCCTTTTACATCTGCAAAACGCGCTTTTGTCAGTGTATACGCGCTATACTCTGTGCTTAT
6321 CTGCAAACCCAAATCTTCCCACCCCTGCTGTCCCCATGTCTCGTTTTAAGACCTGCTCGTTTATTTGAGGTAATCGCAAT
6401 CTTGTCCCTTATCTGTCCCAGCAACCAAACTCTGCTCCTTCCAAGTCAGCACCAAAGGATCAGGTCACGTCCGGATGGAT
6481 GACAAGGATGGGATTTATGGCCGCAGATGCGTTTGCAGAAGACAAGCAGAGGGTGGAAAGAGGTACTGGAGTGAGTGAAG
6561 TTTCCTGCAGAGATCCCAGCCGGACCCACCGCAGCTGACACCAAGCGCAGCGGCTGAAATCAAAGCCTGCGTCTGCGCGG
6641 CCCCGGAAGTGATCCTGCGCGGCCCTTGCGTCGGAAGGAGACGCCGCACCTAGGTTGCATCTGGGCTGCGCAGAGTCCCC
6721 AGACCAGATCCCGCCTTTGTTCCACGCACGCGCAGTAAGGACTCATGTGCCCGGTTGTTTCCGGCTGTAACCGAGGTGCT
6801 AACCTACTCCGGGTATATCTCCCCTGGGCCCTGCTCTTGCAGAAATCCGAGTTTATTTGCATCAGGTCCTTACACCGAAA
6881 TTCACAGCGGCTGTCCCTGTCCCAAAGTTGAAGTGCTGAACCCGTGGAGGAAGTCTCAGACGCAAAGGGGAGCTCTGCAG
6961 TGGACAGCTCCCAGGGAAGCCCTCATCAGACCAAGGAGTCATGACAAAAAGGCGCGAGACATCTTGTGAGGAATAGCAGA
7041 AATAATATGACTAGAGGGCGAATGCAGCCCTCTTTGTATCAGTAAAGAACGGGCCTGCAAGGTTGGGCTTTGATCCTAAA
7121 ATCCGGTTTCTAAACCTCCAAAGACTCCTTAGCAAAGCAGCCTGCCGAGCAAGCCTTTCTTAACTGAGCTTAACGGATGG
7201 GACACGTGACCCAAGGCTAGGGCTGTGAGAAAGGAATTTGAGGAATGTTGAGAGGTGGACTCAAAACTTTGTGATCAGCT
7281 GAATTCAAACGATTTTCCTGTGATTCCCTAGTTCCAGAACAGAGTGACACCTGATTGGGAAAGAGAAAGCTCTGGGCAAG
7361 ACTAGGGTGTGGGTTGTAAAGAAGATAGGACACAGGCTGACCCTGAGAGAAGGTCCTATCCTTGAAGATATCAAAACATT
7441 TCTGCAAAATGAATACCAATCACACAGAAACTCAGAAGAGGAAGTCATCATCTCACTAAGCCTCAAATAAAAAGCCAAAG
7521 ACATAAAGGAATAAAATAACATTTAGTGAGCTGGAGAGGTAATTTGCAGTTGAAAGCTCTGGCTGCTCTTGTAGAGACCC
7601 TACATTCCATCCTTAGGGCCCACATGTTGGCTCACAATGGTTCTGTCACTCTAGTTCCAGGGGATTCAACACCTTTTTCT
7681 GGCCTCCTCGAGCCAGAGGCAATATACATTAGGCACAGACTTAGAAAACACCCATATACGTAAAATATTTTTCGAACTTA
7761 AGGCTTCTAGACTATTATCTCTTATGAATTTAGATGCATTCTTACCAAAATGTATGTCTGAATCAGTATATAAAAAGGAA
7841 TGATACATCATGATTAAGTGGCTGAATCTAGAATGCAATGTTGATTTAATTTTCAAAAGAATATGGCTATAGTGATGGTT
7921 CAGCAGTTAAGAACTTGCTGCTCTTCCAGAGAGCACTGAGTTCAATTCCCAGCACCCACATGGTTGCTTACAACTATCTG
8001 TAACTCCAGTTCCACATGATCTAACTACCTCTTCTGGCCTCCGTGGGCACTAGCCACTGAAGTGCTCAGCCATGCCATGC
8081 AGACAAAACACCTATACACATAATTTTCTCTTTTTTTAAAGTTGTATTTGTTTTATTATATGTAAGTACAATGTAGCTGT
8161 CTTCAGACACTCCAGAAGAGGGCATCAGATCCCATTACAGATGGATGTGAGCCACCATGTGGTTGCTGGGATCTGAACTC
8241 AGGACCTTTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCTACACATAATTTTCTATAAAAAGCA
8321 TAACTGTAACACTGCATGAACTAAGGAAAAATTAGAAATCATCTCAGTAGATATATAAAAAATATATATAATGAAATTTT
8401 AAACTCACTAAACTTCAAAAAAAAAAGATATTATGCTAGTGATATTGCTCTGTTGGCAGAGTGCCTGCCTAGCACACAGG
8481 AAGCCCTGGATTCAGTTCCTAGCACACCAAGCCCAACACAGAAAATTAGAAGTCCAAGGTCATTCTCAGCTACATAGTAA
8561 GTTCAAGGCCAACTTAGGGTTTCTTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTTGGGTTT
8641 TTTGTTTGGTTGGTTTGGGGTTTGGTATTTTGTTTTTTCAAAACAGGCTTTCTCTTTGTAATCTTAGTTGTCCTAGAACT
8721 TGCTCTGGAGACCAGGCTGGCCTTAAACTCATTGAGATCTACCTGTTTATACATCCCAAATAATAACTCAGCAAAACTTT
8801 TTGTGAGCACTAGTATTGGAGAAAACCAACTCAGGGCCTTGTACTTGGTGCCCAGTATAATCCCAACAACACATGAGAAC
8881 ATTAAAATGGACTTTTTCCCATTTAAAGAGAGCAAAGGGCTATCTGTGGTAGCACAGACCTGCAGTCCTATCACTTGGAA
8961 GGCTGAGGCAGGAGGGCTCAAGGTTCAAGGCCATTCTGTGTTCTCTATCAGAAGACTGTCTTGGGCAGAAGAGAGGGAGA
9041 AGGGGAGGAGGCAGGCAGGCCAGGCTTTAGTACACACCTTTAAACCAAGCACTCAGGGAGCAGAAGGAACTCTCTTTGAG
9121 TTCAGAGCCATCCTGATCTACATAGCTAGTTCCAGGCCAACCAGAGCTACATAGTGAGATACTCTTTCAGAAAGAGAGTG
9201 GATGTTTTACCAAAATGTCCTAGCCAAGTGTATGCAGCTCAGAAAGAAAAAGCACATGGGTCTCAAAGGAAAGGGGAAAT
9281 CTTGTCTTTATTCTCAGATGTCATGATTTAGAGTACAAAAAAAAAAAAAATCCACTGAAACTACTAAGTTGAATTAAGCA
9361 AAACCGCAGAAGATAATATCTATTATAACATCAATATATTAAATTGTTCTCAAGTTTTTAATTTTCAAGTTATACAATGA
9441 GTTTCATCATGGTACTTCATATAAATGTGCAGAAGTTTGTCCTTTGTTCCTCTTCTCTGTGTCCCCTCCACATCAGCAAC
9521 CAGAGAAAAGCCAGCCATAACATGTTTAACATGCCCAAGACCCTAGATTTGCCTATGTTTGTGCTATACCAATGGGGGGG
9601 GGGGGGCAGATGAAGATTATTTGTATGTACTAAAAACAATTAGATTAAAATTTAAAATATATACTATTTTTATGGCATCC
9681 AAGAACATGAAATACACATGAGTAATTATAGATCTCTGCTGAAATCTATAGAATAATGTCAAGGAAATCTAGACTGTAAC
9761 CTGCTCATGACACAAAACACTGTGAGGTTGATTATCTTCACACTGCATTCTTTGGTGGTTTGGTGTTGTTATAGAGACAG
9841 AACATACGTGCTAAGAAAGCACATTACCATGAAATTACATATCCAGCCCCTGACATTGATCGCTATATTCAATAAAATCT
9921 GAAAATTTTCAAATTTTATTGAATTTTTTTGTACTTTAAATTTTTATTGGAGTATATTCATTGTACATAGAGATGGGTTT
10001 CATAACGGCATTTTTTTGAGTCAGTTTCTCACTATGTAGCTCTGGTGTCCTGGACTTTTCCAATGCAGATCAGGCCTGCC
10081 TCTGCCTCTGAGTGTGGGATTAAAGGTGGTGCCACTTCATCCAGCGCCATTAAAACACTTTGATTTATTTATAGATCTCT
10161 CCAACAGAAATTTGAAAGGGAGCCAGGGAATAGTGGCACACATCTTTGATCCCAGCATTCAGGAGACAGTGGCAGGTGGA
10241 TCTCTGAGTTGGAGGCCAACCTAGACTACAGAACAGCCAGGGCTACACAGAGAAGCCCTGTCTTGGGGTAGGGAGAAGTA
10321 GGGATTCAAAGGACTTTTTGTGGAAACTAATATATCAATTGTATATGTGAAAATGGAAAAATCGGAGATAGCTACAAGTC
10401 TTCTTTCTGATTTTTTTTATATTTATTTTATGTGTATGAACGTTTTACCTATACATACGTGTATGCACCACATAATTTGC
10481 CTGCAAGGTCAGAAGAAGGCATCAGATCTCCTGGAACTGAAGGTACAGAGAGTTAAGCTATCCTGTTGGTGCTGGGAACA
10561 CCTCCACTGATGAGCCATCTTTCCAGCCACTACAGCCTTTTCTTTTGGTGCTCAGGGTGGAAGCCAGGGCCTTTCGCATA
10641 AAAGCCAAGTGCTCTACCACTAAACTACACCCTCAGCCTTAAAATATTTGTTTAAAATAAAAAGATCAGCTCAAGCATTC
10721 ATGCTGCCTGATCCGATGATCTACTATCAAACTAGGGTGCCTCTAGCTTGAGGGCAGAAATGCAGACCTATGAAAAGGAA
10801 CCAGTCCAGAAAGCCTGACCGACAGGATCAATAGACAACAAAGATGCCTCGGTCAGTGTACAGGAAAGGATGGTCTTTTA
10881 CAGGATTGGTGTTGGGGGACTTGCATTTGGGGAAAGCAGGAGGGGAGGGATTAGCAGTGAACCTTTCCTACTGTATAAAT
10961 AAGAATGGACTCAAAAGAATGTAGTAGCATATGCCTGGAGTCCCAGATACTCAGGAGGCGGAGACAAATGCTCACAAGTT
11041 CAATGCCAGTCTTTACAATATGTGACACTGTTGTGGAGTTCATGACCCCTGGGGAAAAAAACCACACTCAGTCCAGATTG
11121 TAATTAGTTAAATCTATTGAAGCTCTAGCAGGTCAACAATCCCTGACCCAAAGGAGATTGCTATGTGAAGGGAGTAAGGG
11201 AAGGGTTTTAAAAGGCAAAGGCCACCAGACCTTGAATATCTGCACAAGCAAGCCAAGAGCTATTCTGTCTGCCAAGATTA
11281 GGTACCCAAGGCAACCTTAAAATAGTCCTTGAATGTCTGCATAAGCAAGTTACAGAGGCCAAAAGGCAGTCATATCATAA
11361 CAAGTAGATGGCACAGCTGGACTCGCCTGTGTAAAGGGTGACTACATCTGGGTTACGGGAAAGTTATCTTCCAGATATCA
11441 GAGTCAAAGACAAATGACCAGTGGGTGTCAGAACGGATGCCTGGCATAAAAGGGAGTTTCTTTAGCCATCACAGCATCAT
11521 CCTAGAAAAGGTCATTCAAAATCTATCATACACCTAAGAATCATATACCTAAGAATCAAAGTTAAAATCAGAGTCAGGTG
11601 AGGAGGTGGAGGGTCACACCTATAATTCCAACACTGGGGAGGGAGAGGTAAAAGAATCTTTTGAGTTCAAAAACAGCCTT
11681 GCTACATACCCAGACCTTGCTACATACCCAGACCTTGTTTTGGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agaACGUCGAAGGCAGAGGUCa 5'
             ||:| : ||: ||||||| 
Target 5' ggaTGTATTCTCTTTCTCCAGa 3'
4304 - 4325 159.00 -13.60
2
miRNA  3' agAACGUCG-AAGGC-AGAGGUCa 5'
            || :||| |  :| ||||||| 
Target 5' acTTATAGCATAATGTTCTCCAGa 3'
1645 - 1668 152.00 -18.00
3
miRNA  3' agaACGUCGAAGGCAGAGGUCa 5'
             || |||  :| ||||||| 
Target 5' cacTG-AGCCATC-TCTCCAGc 3'
8274 - 8293 149.00 -14.60
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions mESCs
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM622573. RNA binding protein: AGO2. Condition:KO1 ...

- Leung AK; Young AG; Bhutkar A; Zheng GX; et al., 2011, Nature structural & molecular biology.

Article - Leung AK; Young AG; Bhutkar A; Zheng GX; et al.
- Nature structural & molecular biology, 2011
MicroRNAs (miRNAs) are 19-22-nucleotide noncoding RNAs that post-transcriptionally regulate mRNA targets. We have identified endogenous miRNA binding sites in mouse embryonic stem cells (mESCs), by performing photo-cross-linking immunoprecipitation using antibodies to Argonaute (Ago2) followed by deep sequencing of RNAs (CLIP-seq). We also performed CLIP-seq in Dicer(-)/(-) mESCs that lack mature miRNAs, allowing us to define whether the association of Ago2 with the identified sites was miRNA dependent. A significantly enriched motif, GCACUU, was identified only in wild-type mESCs in 3' untranslated and coding regions. This motif matches the seed of a miRNA family that constitutes ~68% of the mESC miRNA population. Unexpectedly, a G-rich motif was enriched in sequences cross-linked to Ago2 in both the presence and absence of miRNAs. Expression analysis and reporter assays confirmed that the seed-related motif confers miRNA-directed regulation on host mRNAs and that the G-rich motif can modulate this regulation.
LinkOut: [PMID: 21258322]
CLIP-seq Support 1 for dataset GSM4656410
Method / RBP HITS-CLIP / AGO
Cell line / Condition mouse liver / e185 rep2
Location of target site NM_023045 | 3UTR | AGCUGUCUUCAGACACUCCAGAAGAGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE153876
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4751756
Method / RBP HITS-CLIP / AGO
Cell line / Condition adipose tissue / RNA sequencing of iBAT 1
Location of target site NM_023045 | 3UTR | AGUACAAUGUAGCUGUCUUCAGACACUCCAGAAGAGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE142677
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4751757
Method / RBP HITS-CLIP / AGO
Cell line / Condition adipose tissue / RNA sequencing of iBAT 2
Location of target site NM_023045 | 3UTR | AGUACAAUGUAGCUGUCUUCAGACACUCCAGAAGAGGGCAUCAGAUCCCAUUACAGAUGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE142677
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4751758
Method / RBP HITS-CLIP / AGO
Cell line / Condition adipose tissue / RNA sequencing of iBAT 3
Location of target site NM_023045 | 3UTR | AGUACAAUGUAGCUGUCUUCAGACACUCCAGAAGAGGGCAUCAGAUCCCAUUACAGAUGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE142677
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4751759
Method / RBP HITS-CLIP / AGO
Cell line / Condition adipose tissue / RNA sequencing of iBAT 4
Location of target site NM_023045 | 3UTR | GUACAAUGUAGCUGUCUUCAGACACUCCAGAAGAGGGCAUCAGAUCCCAUUACAGAUGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE142677
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4751760
Method / RBP HITS-CLIP / AGO
Cell line / Condition adipose tissue / RNA sequencing of eWAT 1
Location of target site NM_023045 | 3UTR | AGUACAAUGUAGCUGUCUUCAGACACUCCAGAAGAGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE142677
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM4751761
Method / RBP HITS-CLIP / AGO
Cell line / Condition adipose tissue / RNA sequencing of eWAT 2
Location of target site NM_023045 | 3UTR | GUACAAUGUAGCUGUCUUCAGACACUCCAGAAGAGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE142677
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM4751762
Method / RBP HITS-CLIP / AGO
Cell line / Condition adipose tissue / RNA sequencing of eWAT 3
Location of target site NM_023045 | 3UTR | GUACAAUGUAGCUGUCUUCAGACACUCCAGAAGAGGGCAUCAGAUCCCAUUACAGAUGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE142677
CLIP-seq Viewer Link
CLIP-seq Support 9 for dataset GSM4751763
Method / RBP HITS-CLIP / AGO
Cell line / Condition adipose tissue / RNA sequencing of eWAT 4
Location of target site NM_023045 | 3UTR | AUUAUAUGUAAGUACAAUGUAGCUGUCUUCAGACACUCCAGAAGAGGGCAUCAGAUCCCAUUACAGAUGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE142677
CLIP-seq Viewer Link
CLIP-seq Support 10 for dataset GSM622573
Method / RBP HITS-CLIP / AGO2
Cell line / Condition mESCs / KO1
Location of target site NM_023045 | 3UTR | AUGUGGUUGCUGGGAUCUGAACUCAGGACCUUUGGAAGAGCAGUCAGUGCUCUUAACCACUGAGCCAUCUCUCCAGCCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21258322 / GSE25310
CLIP-seq Viewer Link
39 mmu-miR-5114 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT577166 Madd MAP-kinase activating death domain 2 12
MIRT580377 Tmem206 transmembrane protein 206 2 4
MIRT580729 Srrm4 serine/arginine repetitive matrix 4 2 2
MIRT581165 Sec23ip Sec23 interacting protein 2 2
MIRT581310 Rnf150 ring finger protein 150 2 4
MIRT581568 Prtg protogenin 2 2
MIRT582280 Nav2 neuron navigator 2 2 2
MIRT582511 March5 membrane-associated ring finger (C3HC4) 5 2 4
MIRT584183 Cpeb3 cytoplasmic polyadenylation element binding protein 3 2 2
MIRT584252 Cmtm6 CKLF-like MARVEL transmembrane domain containing 6 2 2
MIRT584403 Cd63 CD63 antigen 2 2
MIRT586848 Ikbkg inhibitor of kappaB kinase gamma 2 4
MIRT586939 H2-T24 histocompatibility 2, T region locus 24 2 4
MIRT587266 Fam161b family with sequence similarity 161, member B 2 2
MIRT588386 Zfp113 zinc finger protein 113 2 2
MIRT590219 Dync1li2 dynein, cytoplasmic 1 light intermediate chain 2 2 4
MIRT592159 Paxip1 PAX interacting (with transcription-activation domain) protein 1 2 2
MIRT592188 Nanog Nanog homeobox 2 4
MIRT593309 Rmnd5a required for meiotic nuclear division 5 homolog A 2 2
MIRT594051 1200014J11Rik nuclear cap binding subunit 3 2 2
MIRT594495 Cspg4 chondroitin sulfate proteoglycan 4 2 2
MIRT595572 Mtf1 metal response element binding transcription factor 1 2 2
MIRT597122 Svopl SV2 related protein homolog (rat)-like 2 2
MIRT598947 Ggps1 geranylgeranyl diphosphate synthase 1 2 2
MIRT599498 Ccdc78 coiled-coil domain containing 78 2 2
MIRT601067 Cdc14b CDC14 cell division cycle 14B 2 2
MIRT601902 Padi2 peptidyl arginine deiminase, type II 2 2
MIRT602607 Chrna1 cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle) 2 2
MIRT602771 Armc2 armadillo repeat containing 2 2 2
MIRT602877 4931428F04Rik RIKEN cDNA 4931428F04 gene 2 2
MIRT602958 Xpo7 exportin 7 2 2
MIRT603304 Slc4a7 solute carrier family 4, sodium bicarbonate cotransporter, member 7 2 2
MIRT603315 Slc35d2 solute carrier family 35, member D2 2 2
MIRT603389 Sgol2 shugoshin 2A 2 2
MIRT605052 Efr3b EFR3 homolog B 2 2
MIRT605054 Arhgef39 Rho guanine nucleotide exchange factor (GEF) 39 1 1
MIRT605412 T2 brachyury 2 2 2
MIRT605550 Ppp1r16b protein phosphatase 1, regulatory (inhibitor) subunit 16B 2 2
MIRT606407 Glrx2 glutaredoxin 2 (thioltransferase) 2 2

Error report submission