pre-miRNA Information
pre-miRNA hsa-mir-3911   
Genomic Coordinates chr9: 127690687 - 127690795
Description Homo sapiens miR-3911 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3911
Sequence 12| UGUGUGGAUCCUGGAGGAGGCA |33
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
431152 7 ClinVar
COSM3847691 15 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs943029638 2 dbSNP
rs780635543 3 dbSNP
rs371437556 6 dbSNP
rs1135401819 7 dbSNP
rs748706130 14 dbSNP
rs1403241180 15 dbSNP
rs779344153 17 dbSNP
rs755366929 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CDK15   
Synonyms ALS2CR7, PFTAIRE2, PFTK2
Description cyclin dependent kinase 15
Transcript NM_139158   
Expression
Putative miRNA Targets on CDK15
3'UTR of CDK15
(miRNA target sites are highlighted)
>CDK15|NM_139158|3'UTR
   1 AAAGAAAGGGCGAGATCACCAAGGTTCTTCCAGGGCTGTATTTCTGCAGTTTCGGTTTTCATTTGCTTCAGCTTACTAAG
  81 AAGCTTCAAATCTAACTCCATACTGAACAAGGGGCTTTATGTCCTCACCTATGACCTGGAATAGTTTAAATATGGTGTTC
 161 AAGGCAATAGTACATAATAGTGGAAGAAAATTCAGTGGAAGGTTATTGCTATTGTCATTTGCATAGAATTTAAGTGATTG
 241 ATTTAAAAAAACTGGACATAAACTAAGTCTAAGAAGAGGGCTTCTGAATAACTTCATTCATTTTGGCATTTGTTAAGAGA
 321 TTCCTGGGCTAGAAGGTTGATTTCCCAAAAAGACAGATAAGAGACTGACAATTTAAAAGAATCTGGAGACAGAGCTGGTG
 401 CTTACAGAGACCTGCCACTCCTGTGTTCACTTACAATTTCTCCCAACAAAAGGATTTCTGTGGCAAGGAGAAAACTAGCC
 481 TAAAGTTTAGAAAAAGATGGTTTCTTGGATAACATTGTTAACAAAAGGACTTCCTGAGGACTATTTATTATTATTTTGTA
 561 GGGGGCACTTCCTCCTTCACTAAACTGGATTATCAGAACGTATTACCACCCAACCCATATTTTAGAAGTTTGGATTTGGC
 641 TGCTGATTAGAAATGAATTTCAGGCTATCTCCTCCTACTGAATCTTAATTGTCTGTGATGATGGCAACAGTGATGGGGAA
 721 TCTAAGCGCTGGTTTGATGGTGGAGATATTGAATAAGTAGTTGGGAGCAGAGTTCCAAAGATGTAATTTAAGCCCTGTTG
 801 CACCACCACACACACACACACACACACACACACACACACACACACACCCCTCAAGTAAAATGAGAGATCTGTCTTAGCTA
 881 ACACGTGTGCCGTTTTATACAATGACTCCTTCTAAAAGCAGCCAGGGAAACTCAAATCGCTTCTGTCCAGGGATCATCTC
 961 AGGAAATGTAGCAGCCTAGAAACCAGAGACCTCTGTATATCCTTTGGAAGAGCAAGGAGGAACTAATTAAGAGATAATTA
1041 AAAAATAGTAACTATCCCCCAATGTCTGAGATGGAAAAAGGAAAAAGACACATGGGTAGCCCAAATCAACCTGCCTGAGT
1121 AAGTATCTGATTTTAGTAAGGCATTTGACAAAGACTGTCCAGCTATACCTGAAAGATGAAACAGTGTAGGCTGGGTGATG
1201 GAGCAGATATATGTACTCAAATCATGGTGTTTATTTAACCCAGAGAAAGGCCAGCCGTGGTGTGCTACAAGGTTCAGTCT
1281 TGAGTCCTATTCTGGTCAAATATTTTTATTAATTACTCGAATAAATCAGAGTACATGGACAACTTTATACAACTCCTTGA
1361 AGTAAGTACTATTATTATTAATTTATGACTTCCATTTCACAAAAGAGGAGACTGAGGCTCAGTGAAGTTAGGTAACTCCT
1441 TCATAGTAGCATGCCAGAGTGAAGATGCAAACCTCAGACCTGGTTCTCCAATGTTCCTGACACCTATCGAATTTAGAGAA
1521 TACACAACTCTTGCAGAGGCAGCTGCTATTTAGTATTGGATCATGATTCAAAAGACACCTTGCTAGAAGCCAATGAACAG
1601 CAGGCCAAAACAACACTTACTTGCATCAAATTTCATCTGACTTAAATTCTTACACTTTGGGCTACAACTTAAAAAAGGCT
1681 ATGACTTAGTGGAAATTGGCACTTTTAAGTACAATATGAATTAATAGTATAATTTCGCTGTCCCCCAGAGATAATGCTAG
1761 TACCAATCGAAAGCTCAGGGATGCTACTGTTGACGCATCAGCAAGAGTTCTTGAGCAGTTTTACCTGTCCATCAATACAA
1841 AGAGTTCCCACAACAGTAGTGGGATTCCTCTGCCTCTCTGAAGATATGAGAGCTATAGGAGGGATTCCCATGTTGGAGGT
1921 TAGAAGAGCTGACCTCCAATGTCCCGTCTAATTCCAAGATTCTCCAATAATGACTTTGGAACAGCTGTGTACAGATTATA
2001 CTTGGAATTATGCTTAGATACTATTGCTGCAGGAATGAATAGACAAATTTTGTTATTAAAAAATTGATTTTATTAAGTGG
2081 AAGTTGACAGAATTATCCTCTTTATAATGGAGGAACATTATGCTTATGCATATGCATATACCTTATGCATATGATTATGC
2161 TTGTGCTTCCTTCTTTAATGGATTTACCTATTCAAAAGCTTAATAAATGTTATAAGACTCTAAAACATTTAAATCTTTCA
2241 TTTCTCAATTTTATCAAATAAACATTCCTGGAATTTGTGCATA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acgGAGG---AGGUCCU-AGGUGUGu 5'
             ||:|   ||:|  | ||||:|| 
Target 5' aagCTTCAAATCTA--ACTCCATACt 3'
81 - 104 131.00 -16.20
2
miRNA  3' acggAGGAGG-UCCUAGG--UGUGu 5'
              |:|||| | | |||  |||| 
Target 5' ctggTTCTCCAATGTTCCTGACACc 3'
1480 - 1504 122.00 -13.00
3
miRNA  3' acGGAGGA---GGUCCUAGGUGUGu 5'
            ||| :|   |||    |||||| 
Target 5' gcCCTGTTGCACCA----CCACACa 3'
792 - 812 121.00 -17.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31519238 13 COSMIC
COSN31573802 16 COSMIC
COSN28702074 104 COSMIC
COSN4988882 203 COSMIC
COSN6932701 258 COSMIC
COSN9304244 332 COSMIC
COSN6556408 377 COSMIC
COSN1819002 800 COSMIC
COSN9871604 1177 COSMIC
COSN6164392 1188 COSMIC
COSN23634236 1505 COSMIC
COSN6164393 1508 COSMIC
COSN6932702 1732 COSMIC
COSN30028377 2147 COSMIC
COSN24580098 2179 COSMIC
COSN9871605 2937 COSMIC
COSN9871606 2938 COSMIC
COSN6932703 2962 COSMIC
COSN6932704 3038 COSMIC
COSN17372016 3455 COSMIC
COSN4988883 3729 COSMIC
COSN6164394 3866 COSMIC
COSN23382703 3933 COSMIC
COSN26483734 4103 COSMIC
COSN23788024 4110 COSMIC
COSN191201 4124 COSMIC
COSN27540175 4133 COSMIC
COSN30068204 4168 COSMIC
COSN5863367 4626 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs374062107 5 dbSNP
rs1186230286 6 dbSNP
rs776719686 9 dbSNP
rs761825946 11 dbSNP
rs367879404 12 dbSNP
rs769543704 13 dbSNP
rs150059535 18 dbSNP
rs1322292928 20 dbSNP
rs1261723341 21 dbSNP
rs763068994 24 dbSNP
rs768861214 26 dbSNP
rs774472112 27 dbSNP
rs1342305231 35 dbSNP
rs1203373087 37 dbSNP
rs1245577265 39 dbSNP
rs761938847 41 dbSNP
rs1281452433 45 dbSNP
rs368836102 51 dbSNP
rs565154540 52 dbSNP
rs918099813 55 dbSNP
rs182036913 57 dbSNP
rs949532764 61 dbSNP
rs1408129425 64 dbSNP
rs1334445982 71 dbSNP
rs905387108 73 dbSNP
rs1002353473 74 dbSNP
rs1035162150 80 dbSNP
rs961260826 84 dbSNP
rs750655585 88 dbSNP
rs1362780164 90 dbSNP
rs1021041684 91 dbSNP
rs530314820 92 dbSNP
rs59041020 104 dbSNP
rs1183401737 105 dbSNP
rs889743832 112 dbSNP
rs1465593317 114 dbSNP
rs910284782 129 dbSNP
rs1006981238 136 dbSNP
rs1203656799 141 dbSNP
rs1253102630 142 dbSNP
rs943099370 149 dbSNP
rs975901957 152 dbSNP
rs751431587 153 dbSNP
rs1384942694 155 dbSNP
rs370170737 162 dbSNP
rs1185807681 177 dbSNP
rs923097331 178 dbSNP
rs929219333 187 dbSNP
rs559716093 190 dbSNP
rs1383723752 195 dbSNP
rs1170000267 219 dbSNP
rs530127645 220 dbSNP
rs1163335897 224 dbSNP
rs1371598943 225 dbSNP
rs1163566517 226 dbSNP
rs145378849 227 dbSNP
rs941326380 228 dbSNP
rs571263976 230 dbSNP
rs781023556 232 dbSNP
rs1412863791 234 dbSNP
rs1314118978 235 dbSNP
rs1357432107 247 dbSNP
rs551866056 249 dbSNP
rs905293929 250 dbSNP
rs570165654 261 dbSNP
rs113787644 264 dbSNP
rs949582055 267 dbSNP
rs1325522184 277 dbSNP
rs896612991 290 dbSNP
rs1303332121 293 dbSNP
rs1406371487 295 dbSNP
rs1363216542 296 dbSNP
rs187363314 297 dbSNP
rs1431016700 300 dbSNP
rs1485595796 304 dbSNP
rs1209333783 306 dbSNP
rs1239785294 307 dbSNP
rs1475261038 317 dbSNP
rs1483603008 320 dbSNP
rs924234810 321 dbSNP
rs538060793 328 dbSNP
rs556869677 329 dbSNP
rs866607144 331 dbSNP
rs968142313 334 dbSNP
rs889804995 347 dbSNP
rs979085615 350 dbSNP
rs1274980275 351 dbSNP
rs772532248 353 dbSNP
rs1212612236 357 dbSNP
rs1338563859 359 dbSNP
rs568980635 361 dbSNP
rs549694339 362 dbSNP
rs1041166022 367 dbSNP
rs964438881 375 dbSNP
rs747353196 381 dbSNP
rs568370155 382 dbSNP
rs929149853 383 dbSNP
rs554155527 387 dbSNP
rs1429353928 395 dbSNP
rs983799837 396 dbSNP
rs1479582076 398 dbSNP
rs909111606 402 dbSNP
rs572474536 412 dbSNP
rs941901017 413 dbSNP
rs1038391551 417 dbSNP
rs1471176783 422 dbSNP
rs905159082 434 dbSNP
rs1202409753 445 dbSNP
rs992890143 447 dbSNP
rs1263598178 448 dbSNP
rs938079833 454 dbSNP
rs1024041933 470 dbSNP
rs1435375175 476 dbSNP
rs1056549649 481 dbSNP
rs1302305126 484 dbSNP
rs146576708 493 dbSNP
rs1009720355 494 dbSNP
rs559229526 496 dbSNP
rs1042927254 501 dbSNP
rs1442204664 504 dbSNP
rs904127328 509 dbSNP
rs1339121092 520 dbSNP
rs577450706 523 dbSNP
rs1001039533 529 dbSNP
rs191786122 538 dbSNP
rs769161932 539 dbSNP
rs1402642114 543 dbSNP
rs376699682 545 dbSNP
rs183703983 549 dbSNP
rs942752625 550 dbSNP
rs1259047989 551 dbSNP
rs377387890 551 dbSNP
rs188227754 552 dbSNP
rs542301487 556 dbSNP
rs1252683129 558 dbSNP
rs1452308906 566 dbSNP
rs1262256888 574 dbSNP
rs901137025 579 dbSNP
rs1192726920 580 dbSNP
rs13385173 587 dbSNP
rs1400044890 588 dbSNP
rs769918255 591 dbSNP
rs888306166 605 dbSNP
rs1390182429 608 dbSNP
rs527657835 624 dbSNP
rs1457370581 630 dbSNP
rs1289801058 638 dbSNP
rs1433231814 639 dbSNP
rs909009008 644 dbSNP
rs552591577 647 dbSNP
rs1343584204 650 dbSNP
rs796625870 655 dbSNP
rs979975934 659 dbSNP
rs1425340002 668 dbSNP
rs1055742884 669 dbSNP
rs1165452245 676 dbSNP
rs926649151 677 dbSNP
rs1013960520 681 dbSNP
rs773417721 681 dbSNP
rs1486650887 685 dbSNP
rs1239954996 687 dbSNP
rs937986581 701 dbSNP
rs1056980280 715 dbSNP
rs1439102221 723 dbSNP
rs763213295 725 dbSNP
rs918026798 726 dbSNP
rs1277008664 728 dbSNP
rs1244491869 730 dbSNP
rs1359340263 734 dbSNP
rs1296744128 738 dbSNP
rs945424565 739 dbSNP
rs1360157961 744 dbSNP
rs1042569804 750 dbSNP
rs1405761192 761 dbSNP
rs1367595150 766 dbSNP
rs190183374 768 dbSNP
rs1301371168 774 dbSNP
rs1422676624 775 dbSNP
rs1368842452 785 dbSNP
rs1170910043 787 dbSNP
rs903993730 788 dbSNP
rs182447200 789 dbSNP
rs1039255871 790 dbSNP
rs115359828 796 dbSNP
rs997170456 802 dbSNP
rs1219531988 807 dbSNP
rs958252461 808 dbSNP
rs1252349779 811 dbSNP
rs1207213086 812 dbSNP
rs1467333110 816 dbSNP
rs568920397 819 dbSNP
rs1223407332 833 dbSNP
rs1224426901 835 dbSNP
rs990049468 836 dbSNP
rs1247076667 850 dbSNP
rs1030385432 856 dbSNP
rs950507879 873 dbSNP
rs1483247853 874 dbSNP
rs1389963422 875 dbSNP
rs1469490290 877 dbSNP
rs1175406744 885 dbSNP
rs1414143254 891 dbSNP
rs1352604153 892 dbSNP
rs1472619668 895 dbSNP
rs1169686501 902 dbSNP
rs1005004888 905 dbSNP
rs759254973 910 dbSNP
rs1163613105 923 dbSNP
rs1432047808 924 dbSNP
rs535960647 924 dbSNP
rs547854934 925 dbSNP
rs1198145665 934 dbSNP
rs1479942920 945 dbSNP
rs1325876909 957 dbSNP
rs758939998 962 dbSNP
rs1350823453 963 dbSNP
rs114193628 983 dbSNP
rs533575754 987 dbSNP
rs1352919552 997 dbSNP
rs372799887 1004 dbSNP
rs1229038662 1007 dbSNP
rs558257035 1008 dbSNP
rs139108303 1020 dbSNP
rs1309220667 1022 dbSNP
rs1230222340 1035 dbSNP
rs186769863 1038 dbSNP
rs941237076 1039 dbSNP
rs1202241768 1040 dbSNP
rs992185507 1042 dbSNP
rs1253821568 1051 dbSNP
rs1056032127 1054 dbSNP
rs894269813 1059 dbSNP
rs1014133514 1060 dbSNP
rs1465226547 1065 dbSNP
rs1363946270 1070 dbSNP
rs544827627 1071 dbSNP
rs1415039629 1072 dbSNP
rs917878109 1075 dbSNP
rs1045592631 1076 dbSNP
rs556725777 1089 dbSNP
rs575050910 1095 dbSNP
rs1184627476 1107 dbSNP
rs1462969272 1114 dbSNP
rs902873570 1115 dbSNP
rs978580762 1116 dbSNP
rs925489925 1118 dbSNP
rs1351664491 1124 dbSNP
rs936830222 1126 dbSNP
rs112174887 1128 dbSNP
rs191241234 1129 dbSNP
rs957347805 1138 dbSNP
rs1308387878 1139 dbSNP
rs1453243796 1140 dbSNP
rs1409730350 1156 dbSNP
rs1306594734 1159 dbSNP
rs141570271 1160 dbSNP
rs1018867916 1161 dbSNP
rs964216181 1164 dbSNP
rs1410982810 1166 dbSNP
rs1379119010 1183 dbSNP
rs977020623 1185 dbSNP
rs1338770752 1188 dbSNP
rs1051446518 1194 dbSNP
rs922832046 1200 dbSNP
rs886064651 1203 dbSNP
rs546226272 1208 dbSNP
rs1004674452 1209 dbSNP
rs1447811841 1211 dbSNP
rs1264060998 1213 dbSNP
rs751954345 1226 dbSNP
rs1488024718 1229 dbSNP
rs1292577775 1230 dbSNP
rs1284977826 1232 dbSNP
rs899025966 1234 dbSNP
rs982772554 1236 dbSNP
rs796556487 1240 dbSNP
rs1276518346 1249 dbSNP
rs753516527 1249 dbSNP
rs1319925648 1251 dbSNP
rs1034156427 1256 dbSNP
rs1359406466 1260 dbSNP
rs1303223930 1267 dbSNP
rs1047389848 1268 dbSNP
rs756918602 1272 dbSNP
rs185738879 1275 dbSNP
rs1383865312 1276 dbSNP
rs1025015781 1290 dbSNP
rs967107169 1294 dbSNP
rs1255405168 1308 dbSNP
rs532449967 1312 dbSNP
rs1375104391 1314 dbSNP
rs1191360392 1317 dbSNP
rs1443614338 1320 dbSNP
rs949862270 1321 dbSNP
rs1269707764 1328 dbSNP
rs1224745109 1335 dbSNP
rs1490827552 1336 dbSNP
rs978178275 1340 dbSNP
rs1045646404 1342 dbSNP
rs903094472 1349 dbSNP
rs1339889505 1355 dbSNP
rs1271702594 1365 dbSNP
rs1216484853 1366 dbSNP
rs1339372260 1368 dbSNP
rs1241112652 1371 dbSNP
rs1474223637 1375 dbSNP
rs1406192614 1386 dbSNP
rs1348675838 1401 dbSNP
rs934368385 1404 dbSNP
rs778457190 1408 dbSNP
rs550569749 1416 dbSNP
rs562727051 1420 dbSNP
rs747328235 1431 dbSNP
rs757454098 1439 dbSNP
rs1392398470 1445 dbSNP
rs755312018 1452 dbSNP
rs733882 1453 dbSNP
rs1465315044 1454 dbSNP
rs547965623 1470 dbSNP
rs892770926 1473 dbSNP
rs868245246 1486 dbSNP
rs933592394 1488 dbSNP
rs1052446059 1490 dbSNP
rs1334961757 1494 dbSNP
rs1274863214 1495 dbSNP
rs1196462359 1501 dbSNP
rs998342109 1501 dbSNP
rs1029954820 1509 dbSNP
rs886141388 1515 dbSNP
rs1224932322 1520 dbSNP
rs189068082 1525 dbSNP
rs940337756 1534 dbSNP
rs748718425 1541 dbSNP
rs982991880 1553 dbSNP
rs1337993939 1560 dbSNP
rs1329762283 1561 dbSNP
rs1300169677 1563 dbSNP
rs1465398292 1565 dbSNP
rs1407261663 1578 dbSNP
rs1178914006 1579 dbSNP
rs1365662132 1579 dbSNP
rs898928219 1581 dbSNP
rs1412971648 1582 dbSNP
rs1424632912 1589 dbSNP
rs1159151111 1605 dbSNP
rs1233349199 1608 dbSNP
rs533636208 1609 dbSNP
rs1001249786 1627 dbSNP
rs1034186079 1637 dbSNP
rs1234486138 1639 dbSNP
rs1410815901 1642 dbSNP
rs895634568 1646 dbSNP
rs1176576894 1647 dbSNP
rs1017356424 1649 dbSNP
rs542151388 1656 dbSNP
rs193021575 1657 dbSNP
rs371406380 1658 dbSNP
rs570312124 1659 dbSNP
rs1444834286 1663 dbSNP
rs1190104204 1664 dbSNP
rs185349754 1665 dbSNP
rs773229257 1666 dbSNP
rs1307769464 1670 dbSNP
rs978080022 1671 dbSNP
rs1384070495 1672 dbSNP
rs1032278311 1676 dbSNP
rs958125506 1680 dbSNP
rs949914289 1701 dbSNP
rs1358739962 1706 dbSNP
rs749401597 1707 dbSNP
rs746166811 1708 dbSNP
rs1319090995 1720 dbSNP
rs981231210 1724 dbSNP
rs974760824 1733 dbSNP
rs922164517 1734 dbSNP
rs934589040 1737 dbSNP
rs955037695 1738 dbSNP
rs1455771594 1761 dbSNP
rs892814996 1764 dbSNP
rs987769899 1767 dbSNP
rs1322776424 1768 dbSNP
rs756134814 1772 dbSNP
rs1216030791 1773 dbSNP
rs1448277475 1777 dbSNP
rs940899263 1783 dbSNP
rs556551317 1785 dbSNP
rs920218659 1786 dbSNP
rs188964969 1787 dbSNP
rs1317625413 1799 dbSNP
rs1298967875 1814 dbSNP
rs1378758994 1819 dbSNP
rs1289709701 1829 dbSNP
rs1332695206 1830 dbSNP
rs1358761627 1839 dbSNP
rs1297650507 1841 dbSNP
rs1055543337 1846 dbSNP
rs1278952564 1861 dbSNP
rs1326418965 1865 dbSNP
rs895678065 1871 dbSNP
rs998392887 1897 dbSNP
rs1029838058 1898 dbSNP
rs1166695709 1904 dbSNP
rs1268316306 1909 dbSNP
rs1421881772 1911 dbSNP
rs1178032045 1918 dbSNP
rs1014483646 1921 dbSNP
rs1213385034 1928 dbSNP
rs887239475 1933 dbSNP
rs1478596892 1940 dbSNP
rs1041526073 1953 dbSNP
rs759365136 1954 dbSNP
rs1490662201 1957 dbSNP
rs536098561 1965 dbSNP
rs1000038113 1966 dbSNP
rs554405612 1970 dbSNP
rs1032309781 1973 dbSNP
rs1363771338 1974 dbSNP
rs1216613004 1980 dbSNP
rs1338617182 1985 dbSNP
rs1471640590 1991 dbSNP
rs767285371 1999 dbSNP
rs1405591782 2001 dbSNP
rs572575954 2005 dbSNP
rs971458766 2006 dbSNP
rs981459011 2015 dbSNP
rs924462125 2019 dbSNP
rs958030653 2020 dbSNP
rs934473129 2021 dbSNP
rs1420959034 2024 dbSNP
rs990495987 2026 dbSNP
rs748028411 2032 dbSNP
rs1292058785 2033 dbSNP
rs1029480245 2039 dbSNP
rs181372297 2049 dbSNP
rs988064555 2052 dbSNP
rs1488435768 2055 dbSNP
rs564524071 2068 dbSNP
rs943064145 2073 dbSNP
rs908002751 2074 dbSNP
rs1252255353 2084 dbSNP
rs1038695587 2098 dbSNP
rs184111774 2110 dbSNP
rs1348581081 2121 dbSNP
rs1224337298 2126 dbSNP
rs933064409 2129 dbSNP
rs1229655421 2150 dbSNP
rs973648575 2168 dbSNP
rs35356950 2169 dbSNP
rs1366751254 2173 dbSNP
rs772163762 2181 dbSNP
rs1298553752 2188 dbSNP
rs1448666147 2189 dbSNP
rs1397809723 2201 dbSNP
rs920291604 2203 dbSNP
rs1333630705 2215 dbSNP
rs1469980086 2216 dbSNP
rs936977131 2228 dbSNP
rs1378922364 2233 dbSNP
rs1173255323 2234 dbSNP
rs1433126694 2238 dbSNP
rs1055570211 2256 dbSNP
rs1251824381 2260 dbSNP
rs1242146385 2261 dbSNP
rs1047484587 2264 dbSNP
rs1237944839 2274 dbSNP
rs764146012 2276 dbSNP
rs1489654018 2290 dbSNP
rs1347313799 2292 dbSNP
rs1254349850 2308 dbSNP
rs887292031 2310 dbSNP
rs773090794 2315 dbSNP
rs543780556 2330 dbSNP
rs1482380113 2335 dbSNP
rs1039052896 2343 dbSNP
rs1041952319 2346 dbSNP
rs902978858 2347 dbSNP
rs1452918648 2357 dbSNP
rs1412775842 2374 dbSNP
rs1300590024 2381 dbSNP
rs1474958133 2391 dbSNP
rs1000109816 2395 dbSNP
rs1054293858 2397 dbSNP
rs562478662 2404 dbSNP
rs1161039570 2405 dbSNP
rs996116949 2410 dbSNP
rs756828611 2411 dbSNP
rs1028971595 2414 dbSNP
rs76590710 2422 dbSNP
rs36004547 2423 dbSNP
rs1444369292 2427 dbSNP
rs1370465825 2428 dbSNP
rs1200057686 2433 dbSNP
rs1458176675 2434 dbSNP
rs1486262763 2449 dbSNP
rs548026069 2451 dbSNP
rs1242306023 2463 dbSNP
rs1008943813 2466 dbSNP
rs559865885 2470 dbSNP
rs1351325683 2471 dbSNP
rs1015546589 2473 dbSNP
rs1245182551 2474 dbSNP
rs971344446 2478 dbSNP
rs1310204780 2479 dbSNP
rs962196540 2482 dbSNP
rs1395082931 2485 dbSNP
rs1411599678 2488 dbSNP
rs1299424937 2489 dbSNP
rs973679172 2490 dbSNP
rs1418424801 2495 dbSNP
rs1002933870 2497 dbSNP
rs1164647341 2503 dbSNP
rs1474000419 2505 dbSNP
rs1031701309 2510 dbSNP
rs1027889312 2521 dbSNP
rs1308621307 2524 dbSNP
rs956095735 2535 dbSNP
rs1214466725 2536 dbSNP
rs764886588 2548 dbSNP
rs1354268692 2550 dbSNP
rs989992617 2555 dbSNP
rs750100107 2557 dbSNP
rs914514894 2571 dbSNP
rs1393834140 2579 dbSNP
rs991573594 2585 dbSNP
rs147042922 2587 dbSNP
rs1321977148 2597 dbSNP
rs949845531 2598 dbSNP
rs922944578 2618 dbSNP
rs974622644 2618 dbSNP
rs1279568227 2619 dbSNP
rs188451415 2620 dbSNP
rs1274380857 2621 dbSNP
rs1339238339 2626 dbSNP
rs1340552388 2631 dbSNP
rs1207910777 2633 dbSNP
rs1253214536 2651 dbSNP
rs932949736 2674 dbSNP
rs977197980 2677 dbSNP
rs1389109825 2681 dbSNP
rs924483184 2689 dbSNP
rs1162964244 2693 dbSNP
rs935824757 2702 dbSNP
rs1425988434 2703 dbSNP
rs1054324697 2705 dbSNP
rs1258483702 2706 dbSNP
rs1199581235 2710 dbSNP
rs1453192403 2721 dbSNP
rs1047532532 2724 dbSNP
rs1208968885 2728 dbSNP
rs907609944 2741 dbSNP
rs1003833609 2748 dbSNP
rs1424618003 2765 dbSNP
rs12466619 2769 dbSNP
rs1316820472 2776 dbSNP
rs1478845258 2783 dbSNP
rs1057116396 2784 dbSNP
rs755364353 2785 dbSNP
rs781447974 2788 dbSNP
rs940215101 2789 dbSNP
rs1329793392 2797 dbSNP
rs1323332801 2798 dbSNP
rs1447926509 2802 dbSNP
rs570448209 2808 dbSNP
rs1050860402 2809 dbSNP
rs527294585 2810 dbSNP
rs1430082026 2814 dbSNP
rs545359453 2826 dbSNP
rs1244871587 2828 dbSNP
rs1198045711 2829 dbSNP
rs1458083409 2834 dbSNP
rs1431473095 2845 dbSNP
rs1169109302 2878 dbSNP
rs1009429927 2886 dbSNP
rs1456990665 2887 dbSNP
rs1278730436 2888 dbSNP
rs180894228 2889 dbSNP
rs568819382 2890 dbSNP
rs536109178 2899 dbSNP
rs995020280 2903 dbSNP
rs1379664186 2907 dbSNP
rs778258139 2912 dbSNP
rs1027794420 2917 dbSNP
rs1002816169 2936 dbSNP
rs376046679 2937 dbSNP
rs1031751860 2939 dbSNP
rs956147791 2940 dbSNP
rs1381317517 2946 dbSNP
rs1446338962 2947 dbSNP
rs991718788 2973 dbSNP
rs1336284636 2974 dbSNP
rs1012037297 2979 dbSNP
rs554416080 2980 dbSNP
rs1231132920 2987 dbSNP
rs971081245 2989 dbSNP
rs1312154337 2999 dbSNP
rs964871091 3011 dbSNP
rs1208028416 3018 dbSNP
rs141382421 3038 dbSNP
rs1438719474 3042 dbSNP
rs924347691 3046 dbSNP
rs1211758267 3047 dbSNP
rs1440243961 3053 dbSNP
rs935729621 3056 dbSNP
rs1217996338 3077 dbSNP
rs1356398582 3081 dbSNP
rs17385479 3089 dbSNP
rs185779432 3094 dbSNP
rs1239831780 3101 dbSNP
rs921062356 3102 dbSNP
rs770979251 3112 dbSNP
rs1446071092 3117 dbSNP
rs192347435 3123 dbSNP
rs1188999390 3125 dbSNP
rs1051012449 3136 dbSNP
rs774631770 3137 dbSNP
rs746119428 3139 dbSNP
rs1431375982 3150 dbSNP
rs181979986 3156 dbSNP
rs1362327417 3157 dbSNP
rs944704266 3163 dbSNP
rs1177537096 3167 dbSNP
rs1183306959 3174 dbSNP
rs1414221932 3174 dbSNP
rs1471568381 3178 dbSNP
rs1170914405 3180 dbSNP
rs1186517372 3180 dbSNP
rs1219757200 3180 dbSNP
rs1248830940 3180 dbSNP
rs1258991437 3180 dbSNP
rs1260393292 3180 dbSNP
rs1281326067 3180 dbSNP
rs1321381971 3180 dbSNP
rs1402933331 3180 dbSNP
rs147570442 3180 dbSNP
rs1478546984 3180 dbSNP
rs1489053012 3180 dbSNP
rs572056913 3180 dbSNP
rs5837794 3180 dbSNP
rs61405737 3180 dbSNP
rs71794560 3180 dbSNP
rs750302540 3180 dbSNP
rs766045026 3180 dbSNP
rs1316203323 3182 dbSNP
rs1359228688 3182 dbSNP
rs1381594597 3183 dbSNP
rs1452477296 3183 dbSNP
rs1318090732 3184 dbSNP
rs199746537 3185 dbSNP
rs1295100908 3186 dbSNP
rs1036338711 3188 dbSNP
rs1393434502 3198 dbSNP
rs1390407301 3205 dbSNP
rs1437674371 3215 dbSNP
rs1420838952 3218 dbSNP
rs1466861574 3218 dbSNP
rs941791619 3218 dbSNP
rs1491380631 3220 dbSNP
rs866456796 3220 dbSNP
rs948882592 3222 dbSNP
rs994885743 3222 dbSNP
rs1298803107 3223 dbSNP
rs1367444761 3225 dbSNP
rs1044657101 3227 dbSNP
rs531283177 3233 dbSNP
rs1217397863 3238 dbSNP
rs907459722 3257 dbSNP
rs79880038 3258 dbSNP
rs374373807 3259 dbSNP
rs1397609901 3261 dbSNP
rs1013622267 3265 dbSNP
rs555335995 3266 dbSNP
rs1360366594 3274 dbSNP
rs1174642719 3275 dbSNP
rs1454216540 3276 dbSNP
rs1266419757 3282 dbSNP
rs1180850174 3287 dbSNP
rs891756489 3287 dbSNP
rs185967532 3295 dbSNP
rs971495605 3309 dbSNP
rs998551234 3312 dbSNP
rs1031269387 3313 dbSNP
rs1209053031 3314 dbSNP
rs1346983845 3315 dbSNP
rs957127770 3320 dbSNP
rs1476953919 3334 dbSNP
rs1374338294 3341 dbSNP
rs1305911160 3343 dbSNP
rs900354376 3345 dbSNP
rs995996978 3346 dbSNP
rs1300496927 3362 dbSNP
rs1434667371 3364 dbSNP
rs867372719 3367 dbSNP
rs1030287062 3370 dbSNP
rs1418309090 3374 dbSNP
rs16838385 3375 dbSNP
rs971365 3409 dbSNP
rs1457454541 3410 dbSNP
rs1254188483 3413 dbSNP
rs555619337 3413 dbSNP
rs963351626 3413 dbSNP
rs1286697505 3414 dbSNP
rs973200952 3422 dbSNP
rs987145362 3430 dbSNP
rs1259923101 3431 dbSNP
rs916302978 3434 dbSNP
rs1277437044 3436 dbSNP
rs543862736 3438 dbSNP
rs912497090 3446 dbSNP
rs1340573844 3455 dbSNP
rs980239014 3455 dbSNP
rs376823398 3457 dbSNP
rs150796841 3463 dbSNP
rs16838387 3466 dbSNP
rs1384709205 3467 dbSNP
rs1164142321 3478 dbSNP
rs1053749660 3491 dbSNP
rs1366894598 3491 dbSNP
rs1164435833 3502 dbSNP
rs1478215644 3507 dbSNP
rs891811129 3510 dbSNP
rs1195842403 3515 dbSNP
rs1445141805 3525 dbSNP
rs190430506 3527 dbSNP
rs947354576 3535 dbSNP
rs1227820206 3541 dbSNP
rs545720164 3552 dbSNP
rs549806436 3554 dbSNP
rs1270938200 3557 dbSNP
rs1232289010 3558 dbSNP
rs930757105 3564 dbSNP
rs1331419419 3565 dbSNP
rs776719164 3568 dbSNP
rs1049169191 3580 dbSNP
rs1250591308 3580 dbSNP
rs1229234724 3582 dbSNP
rs894666167 3584 dbSNP
rs1429257631 3590 dbSNP
rs1289477431 3598 dbSNP
rs1013070039 3599 dbSNP
rs1043173421 3603 dbSNP
rs1449629938 3606 dbSNP
rs1223521290 3630 dbSNP
rs182674051 3631 dbSNP
rs1046296365 3646 dbSNP
rs1030172396 3654 dbSNP
rs1253327516 3656 dbSNP
rs138036345 3664 dbSNP
rs1168549863 3681 dbSNP
rs999028466 3692 dbSNP
rs1372474995 3693 dbSNP
rs1411246040 3695 dbSNP
rs1403908544 3702 dbSNP
rs35282259 3702 dbSNP
rs1453170878 3706 dbSNP
rs1031300675 3707 dbSNP
rs957027236 3709 dbSNP
rs12472067 3710 dbSNP
rs1028009404 3711 dbSNP
rs1409765013 3717 dbSNP
rs1259458265 3727 dbSNP
rs566356836 3729 dbSNP
rs953904270 3739 dbSNP
rs1338142224 3765 dbSNP
rs539682273 3769 dbSNP
rs1276008548 3774 dbSNP
rs963106130 3775 dbSNP
rs371041044 3790 dbSNP
rs1369327480 3791 dbSNP
rs1324360133 3793 dbSNP
rs1303049628 3813 dbSNP
rs1447810443 3816 dbSNP
rs973471460 3818 dbSNP
rs558323162 3824 dbSNP
rs376422945 3826 dbSNP
rs1023425695 3831 dbSNP
rs74873961 3840 dbSNP
rs1173158151 3842 dbSNP
rs981794638 3848 dbSNP
rs73989604 3858 dbSNP
rs960173155 3860 dbSNP
rs1354542391 3864 dbSNP
rs1439957511 3865 dbSNP
rs972640507 3870 dbSNP
rs1290343075 3879 dbSNP
rs989098604 3880 dbSNP
rs1201973243 3882 dbSNP
rs1341265595 3883 dbSNP
rs1278705505 3897 dbSNP
rs1202708937 3900 dbSNP
rs1202931246 3916 dbSNP
rs1346270389 3930 dbSNP
rs142517962 3933 dbSNP
rs573661448 3941 dbSNP
rs145974343 3943 dbSNP
rs930619993 3951 dbSNP
rs1483084896 3952 dbSNP
rs1186254951 3962 dbSNP
rs1235347034 3967 dbSNP
rs1278062864 3969 dbSNP
rs1441748542 3977 dbSNP
rs1473578450 3978 dbSNP
rs1183907517 3988 dbSNP
rs570954613 3989 dbSNP
rs1373512943 3990 dbSNP
rs1172898129 3997 dbSNP
rs553677570 3998 dbSNP
rs752993321 4004 dbSNP
rs79533235 4010 dbSNP
rs916017800 4015 dbSNP
rs1167232661 4025 dbSNP
rs1372965885 4032 dbSNP
rs1410562295 4034 dbSNP
rs921888220 4035 dbSNP
rs1333594115 4037 dbSNP
rs111297521 4038 dbSNP
rs559537395 4044 dbSNP
rs1188962914 4046 dbSNP
rs948787561 4049 dbSNP
rs1484994786 4054 dbSNP
rs1051826218 4055 dbSNP
rs1217973436 4076 dbSNP
rs1316076091 4076 dbSNP
rs1356377797 4082 dbSNP
rs1364155709 4087 dbSNP
rs756485123 4092 dbSNP
rs1223445046 4096 dbSNP
rs1357262910 4099 dbSNP
rs907326037 4110 dbSNP
rs73989605 4111 dbSNP
rs1036315440 4114 dbSNP
rs899077525 4114 dbSNP
rs994726568 4119 dbSNP
rs1023731215 4122 dbSNP
rs545727149 4134 dbSNP
rs1414019477 4138 dbSNP
rs556758471 4140 dbSNP
rs1443701577 4142 dbSNP
rs574945262 4143 dbSNP
rs1028376493 4150 dbSNP
rs1449188038 4152 dbSNP
rs1452523389 4153 dbSNP
rs1187097407 4158 dbSNP
rs1392497250 4161 dbSNP
rs1034711657 4163 dbSNP
rs889550030 4168 dbSNP
rs1008350460 4169 dbSNP
rs1286932783 4175 dbSNP
rs531315962 4183 dbSNP
rs1350240375 4191 dbSNP
rs1327582185 4198 dbSNP
rs961194123 4200 dbSNP
rs1416544393 4205 dbSNP
rs1170719423 4212 dbSNP
rs1416281781 4229 dbSNP
rs972676471 4236 dbSNP
rs1418045084 4237 dbSNP
rs1186426279 4241 dbSNP
rs1337611278 4248 dbSNP
rs921940391 4260 dbSNP
rs543509284 4266 dbSNP
rs1026886943 4282 dbSNP
rs931953137 4284 dbSNP
rs778912613 4288 dbSNP
rs1258820418 4293 dbSNP
rs1200560815 4297 dbSNP
rs952585622 4300 dbSNP
rs984804013 4311 dbSNP
rs915865817 4313 dbSNP
rs1213915704 4314 dbSNP
rs911971668 4316 dbSNP
rs1305286105 4320 dbSNP
rs1438291819 4329 dbSNP
rs940574190 4332 dbSNP
rs948834957 4335 dbSNP
rs1331577843 4336 dbSNP
rs1036610441 4339 dbSNP
rs898966510 4341 dbSNP
rs1273077784 4368 dbSNP
rs981931713 4369 dbSNP
rs928847965 4372 dbSNP
rs1346472120 4393 dbSNP
rs1170438304 4394 dbSNP
rs1434191494 4398 dbSNP
rs934812315 4400 dbSNP
rs1053191899 4403 dbSNP
rs893401833 4404 dbSNP
rs1192087397 4411 dbSNP
rs1454021212 4421 dbSNP
rs995177368 4428 dbSNP
rs561691196 4429 dbSNP
rs561619966 4431 dbSNP
rs1463270473 4438 dbSNP
rs1207149636 4447 dbSNP
rs139880722 4451 dbSNP
rs547445648 4454 dbSNP
rs1448004172 4459 dbSNP
rs1231862825 4460 dbSNP
rs547402607 4469 dbSNP
rs1198739067 4471 dbSNP
rs1309612833 4476 dbSNP
rs1392765429 4480 dbSNP
rs1376483078 4490 dbSNP
rs1297048578 4496 dbSNP
rs565418769 4498 dbSNP
rs1377753364 4499 dbSNP
rs1172279399 4504 dbSNP
rs113955697 4506 dbSNP
rs1381311341 4507 dbSNP
rs1479021434 4509 dbSNP
rs1417497763 4512 dbSNP
rs780424245 4513 dbSNP
rs369746064 4515 dbSNP
rs1182482867 4519 dbSNP
rs1486678680 4520 dbSNP
rs559838588 4534 dbSNP
rs956452819 4537 dbSNP
rs1208631093 4540 dbSNP
rs758333471 4544 dbSNP
rs746738867 4547 dbSNP
rs1411428581 4568 dbSNP
rs1240757583 4573 dbSNP
rs1455856815 4576 dbSNP
rs1314712044 4583 dbSNP
rs1305709323 4584 dbSNP
rs533672061 4586 dbSNP
rs1396145159 4589 dbSNP
rs1356792022 4590 dbSNP
rs1311654646 4591 dbSNP
rs1385399043 4592 dbSNP
rs1019771976 4594 dbSNP
rs1414634290 4600 dbSNP
rs1020879424 4609 dbSNP
rs1160609363 4609 dbSNP
rs1321488606 4614 dbSNP
rs968883971 4619 dbSNP
rs897016183 4638 dbSNP
rs187005732 4642 dbSNP
rs768629426 4645 dbSNP
rs1415769358 4647 dbSNP
rs1287172214 4651 dbSNP
rs1485269204 4655 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions BT474 , MDA-MB-231
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1395167. RNA binding protein: AGO. Condition:BT474 AGO HITS-CLIP Replicate 2 HITS-CLIP data was present in GSM1395170. RNA binding protein: AGO. Condition:MDA-MB-231 AGO HITS-CLIP Replicate 2 ...

- Pillai MM; Gillen AE; Yamamoto TM; Kline E; et al., 2014, Breast cancer research and treatment.

Article - Pillai MM; Gillen AE; Yamamoto TM; Kline E; et al.
- Breast cancer research and treatment, 2014
miRNAs regulate the expression of genes in both normal physiology and disease. While miRNAs have been demonstrated to play a pivotal role in aspects of cancer biology, these reports have generally focused on the regulation of single genes. Such single-gene approaches have significant limitations, relying on miRNA expression levels and heuristic predictions of mRNA-binding sites. This results in only circumstantial evidence of miRNA-target interaction and typically leads to large numbers of false positive predictions. Here, we used a genome-wide approach (high-throughput sequencing of RNA isolated by crosslinking immunoprecipitation, HITS-CLIP) to define direct miRNA-mRNA interactions in three breast cancer subtypes (estrogen receptor positive, Her2 amplified, and triple negative). Focusing on steroid receptor signaling, we identified two novel regulators of the ER pathway (miR-9-5p and miR-193a/b-3p), which together target multiple genes involved in ER signaling. Moreover, this approach enabled the definition of miR-9-5p as a global regulator of steroid receptor signaling in breast cancer. We show that miRNA targets and networks defined by HITS-CLIP under physiologic conditions are predictive of patient outcomes and provide global insight into miRNA regulation in breast cancer.
LinkOut: [PMID: 24906430]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Cardiac Tissues
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM2202480. RNA binding protein: AGO2. Condition:S5_LV_36yo_Male_AGO2_bound_RNA HITS-CLIP data was present in GSM2202477. RNA binding protein: AGO2. Condition:S2_LV_25yo_Male_AGO2_bound_RNA HITS-CLIP data was present in GSM2202479. RNA binding protein: AGO2. Condition:S4_LV_29yo_Male_AGO2_bound_RNA HITS-CLIP data was present in GSM2202478. RNA binding protein: AGO2. Condition:S3_LV_36yo_Male_AGO2_bound_RNA ...

- Spengler RM; Zhang X; Cheng C; McLendon JM; et al., 2016, Nucleic acids research.

Article - Spengler RM; Zhang X; Cheng C; McLendon JM; et al.
- Nucleic acids research, 2016
MicroRNAs (miRs) have emerged as key biological effectors in human health and disease. These small noncoding RNAs are incorporated into Argonaute (Ago) proteins, where they direct post-transcriptional gene silencing via base-pairing with target transcripts. Although miRs have become intriguing biological entities and attractive therapeutic targets, the translational impacts of miR research remain limited by a paucity of empirical miR targeting data, particularly in human primary tissues. Here, to improve our understanding of the diverse roles miRs play in cardiovascular function and disease, we applied high-throughput methods to globally profile miR:target interactions in human heart tissues. We deciphered Ago2:RNA interactions using crosslinking immunoprecipitation coupled with high-throughput sequencing (HITS-CLIP) to generate the first transcriptome-wide map of miR targeting events in human myocardium, detecting 4000 cardiac Ago2 binding sites across >2200 target transcripts. Our initial exploration of this interactome revealed an abundance of miR target sites in gene coding regions, including several sites pointing to new miR-29 functions in regulating cardiomyocyte calcium, growth and metabolism. Also, we uncovered several clinically-relevant interactions involving common genetic variants that alter miR targeting events in cardiomyopathy-associated genes. Overall, these data provide a critical resource for bolstering translational miR research in heart, and likely beyond.
LinkOut: [PMID: 27418678]
CLIP-seq Support 1 for dataset GSM1395167
Method / RBP HITS-CLIP / AGO
Cell line / Condition BT474 / BT474 AGO HITS-CLIP Replicate 2
Location of target site ENST00000450471.2 | 3UTR | CACCACACACACACACACACACACACACACACACACACACACACCCCUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 24906430 / GSE57855
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1395170
Method / RBP HITS-CLIP / AGO
Cell line / Condition MDA-MB-231 / MDA-MB-231 AGO HITS-CLIP Replicate 2
Location of target site ENST00000450471.2 | 3UTR | ACACACACACACACACACACACACACACACACACACCCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 24906430 / GSE57855
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
LUSC -0.903 0.05 -1.000 0.5 4 Click to see details
HNSC 0.313 0.25 0.750 0.03 7 Click to see details
BRCA -0.363 0.27 -0.300 0.31 5 Click to see details
THCA -0.171 0.41 -0.200 0.4 4 Click to see details
THCA -0.171 0.41 -0.200 0.4 4 Click to see details
THCA -0.171 0.41 -0.200 0.4 4 Click to see details
THCA -0.171 0.41 -0.200 0.4 4 Click to see details
THCA -0.171 0.41 -0.200 0.4 4 Click to see details
THCA -0.171 0.41 -0.200 0.4 4 Click to see details
THCA -0.171 0.41 -0.200 0.4 4 Click to see details
70 hsa-miR-3911 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT207399 MAT2A methionine adenosyltransferase 2A 2 6
MIRT284537 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT291946 TPM4 tropomyosin 4 2 2
MIRT293609 PVR poliovirus receptor 2 2
MIRT357688 PAIP2 poly(A) binding protein interacting protein 2 2 2
MIRT451607 MEIS3P1 Meis homeobox 3 pseudogene 1 2 2
MIRT452110 IFITM1 interferon induced transmembrane protein 1 2 2
MIRT457804 KLHL25 kelch like family member 25 2 2
MIRT462730 EFNB1 ephrin B1 2 2
MIRT463219 ZNF131 zinc finger protein 131 2 2
MIRT464141 VPS28 VPS28, ESCRT-I subunit 2 2
MIRT467582 SLC7A5 solute carrier family 7 member 5 2 6
MIRT470824 PLXND1 plexin D1 2 2
MIRT474230 LCLAT1 lysocardiolipin acyltransferase 1 2 2
MIRT478989 COLGALT1 collagen beta(1-O)galactosyltransferase 1 2 2
MIRT479462 CDK6 cyclin dependent kinase 6 2 2
MIRT483558 SYT2 synaptotagmin 2 2 2
MIRT484483 SLC9A1 solute carrier family 9 member A1 2 2
MIRT485224 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT490356 DPYSL5 dihydropyrimidinase like 5 2 4
MIRT493177 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 2
MIRT509802 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT511815 HDGF heparin binding growth factor 2 2
MIRT512254 ARPP19 cAMP regulated phosphoprotein 19 2 6
MIRT513025 GPT2 glutamic--pyruvic transaminase 2 2 2
MIRT519640 ZNF772 zinc finger protein 772 2 4
MIRT531178 SIGLEC12 sialic acid binding Ig like lectin 12 (gene/pseudogene) 2 2
MIRT537870 EDA2R ectodysplasin A2 receptor 2 2
MIRT551914 IGLON5 IgLON family member 5 2 2
MIRT558359 DMTF1 cyclin D binding myb like transcription factor 1 2 2
MIRT559771 URGCP-MRPS24 URGCP-MRPS24 readthrough 2 4
MIRT559813 ZNF83 zinc finger protein 83 2 2
MIRT561999 LPP LIM domain containing preferred translocation partner in lipoma 2 2
MIRT565754 SERTAD2 SERTA domain containing 2 2 2
MIRT569423 DCAF8 DDB1 and CUL4 associated factor 8 2 2
MIRT569845 RGS5 regulator of G protein signaling 5 2 2
MIRT606928 CDK15 cyclin dependent kinase 15 2 2
MIRT607616 TMEM130 transmembrane protein 130 2 4
MIRT607629 TRIOBP TRIO and F-actin binding protein 2 2
MIRT607885 SATB1 SATB homeobox 1 2 2
MIRT607942 SSX2 SSX family member 2 2 4
MIRT608017 CARNS1 carnosine synthase 1 2 4
MIRT608036 UBLCP1 ubiquitin like domain containing CTD phosphatase 1 2 2
MIRT608063 SSX2B SSX family member 2B 2 4
MIRT608558 SBK1 SH3 domain binding kinase 1 2 6
MIRT608915 NCDN neurochondrin 2 6
MIRT615876 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 2 4
MIRT618023 ELFN1 extracellular leucine rich repeat and fibronectin type III domain containing 1 2 2
MIRT620505 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT628101 IL1RAPL1 interleukin 1 receptor accessory protein like 1 2 2
MIRT628700 ZNF548 zinc finger protein 548 2 2
MIRT630658 POU2F1 POU class 2 homeobox 1 2 2
MIRT643508 ZNF28 zinc finger protein 28 2 2
MIRT646379 SLC22A6 solute carrier family 22 member 6 2 2
MIRT660041 C15orf61 chromosome 15 open reading frame 61 2 2
MIRT687700 KRR1 KRR1, small subunit processome component homolog 2 2
MIRT688858 CAMKK2 calcium/calmodulin dependent protein kinase kinase 2 2 2
MIRT690443 REPIN1 replication initiator 1 2 2
MIRT690456 ZNF33A zinc finger protein 33A 2 2
MIRT693796 RHOG ras homolog family member G 2 2
MIRT694274 ZNF529 zinc finger protein 529 2 4
MIRT697697 WAC WW domain containing adaptor with coiled-coil 2 2
MIRT700242 RCC2 regulator of chromosome condensation 2 2 2
MIRT701836 MRPL37 mitochondrial ribosomal protein L37 2 2
MIRT704255 DHCR24 24-dehydrocholesterol reductase 2 2
MIRT707203 SDK2 sidekick cell adhesion molecule 2 2 2
MIRT710365 CREB5 cAMP responsive element binding protein 5 2 2
MIRT711943 WDFY1 WD repeat and FYVE domain containing 1 2 2
MIRT715496 MAZ MYC associated zinc finger protein 2 2
MIRT719250 MS4A1 membrane spanning 4-domains A1 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-3911 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-3911 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-3911 Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-3911 Dabrafenib 44462760 NSC764134 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-3911 Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-3911 Fulvestrant 17756771 NSC719276 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-mir-3911 Vincristine 5978 approved resistant cell line (W1)
hsa-mir-3911 Androstenedione+Letrozole sensitive cell line (MCF-7)
hsa-miR-3911 Palbociclib 5330286 NSC758247 approved resistant tissue (breast cancer)
hsa-miR-3911 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3911 Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-3911 Tamoxifen+Fulvestrant sensitive cell line (LCC9)
hsa-miR-3911 Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-3911 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3911 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-3911 Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

Error report submission