pre-miRNA Information
pre-miRNA hsa-mir-3120   
Genomic Coordinates chr1: 172138808 - 172138888
Description Homo sapiens miR-3120 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3120-5p
Sequence 13| CCUGUCUGUGCCUGCUGUACA |33
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 19 1 + 172138838 26449202, 27587585 MiREDiBase
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN26637643 8 COSMIC
COSN31603497 11 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs750386761 8 dbSNP
rs760725207 9 dbSNP
rs766486759 10 dbSNP
rs754055278 12 dbSNP
rs755288536 19 dbSNP
rs754726014 21 dbSNP
Putative Targets

Gene Information
Gene Symbol CD300E   
Synonyms CD300LE, CLM-2, CLM2, CMRF35-A5, IREM-2, IREM2, PIgR-2, PIgR2
Description CD300e molecule
Transcript NM_181449   
Expression
Putative miRNA Targets on CD300E
3'UTR of CD300E
(miRNA target sites are highlighted)
>CD300E|NM_181449|3'UTR
   1 AGCCAGGCTGACCCGAAGCCCTGCAGAGCCCCATCCCCAGGAGTGCCCCGTGCAGGGAGTCAACCTTTCAGACTGGATGC
  81 GAGAGACCTGTGGACTCTGGAGGGATTTATTGTTCCTGTGCCTCAAAGGAGGGTCCTGGCTCTTAGAGGACACTCCTCTG
 161 GAGTCCTCAATGTGCAGCTTGGGGGTCCTCCTTTCTCCTCCCCAGTCCCCTGCCTCCCTGCCCTCATGCCCACTTCCCAA
 241 GGGCAAGAATTCCCTGGAAGTTGGCCGGGCACCATAGCGAGTGCCTATAATCCCAGCTCAGGAGGCTGAGGCAGGAGGAT
 321 CGGCTGAACGTAAGAGTTCCAGGCCAGCCTGGGCAACATAGAGAGCCCTGTCTCAGAGAGAGAGAGAGAGAGAGAGAGAG
 401 AGAGACAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAAAAGGACGGAGGAAGGGAGGGAAAAAATT
 481 TTCTGGAGGAGCCTGGCCCTTCATTCTTCTTGGCACAAATGCTTCTCAGGCCAGTTTCCCCCAGGGCAATAACTACCTCC
 561 TTCCTGCAGACAGGAGTCTCCCTGAGGACACACCCCTCACAGCCCCAGCCTTTAGGCTCACAGAGCTCCATCTCTTCTCT
 641 GGGACAACCCCAAGGGAGCTTGGTCCCGGCAGAGCTTGCTCATGCAGTTGCCCAGTGTCCCACATGCTCAGGGCTCCTCT
 721 CGTCTTCTGACGCCCCTTGGGTCTCCCTGGCTTTAAGGCCCCTTCTCTCCCTGTAACCAGGCAGTGTGTGGCTGGGCTCA
 801 GAACATCTCTGCCTGGGTGGGCCGTGGATGAGCTGCTCCAGGTTAAAGTTCTGGGGCGAGTTGAAACAGTAAAGGGAGAA
 881 GGAGCTGGTGGGTGCCCCTGATATCACTCCTGGAATTCCCCCACCTGGAGGTGTCCAATGCACAAGGTCAACAGAGTCAG
 961 TTCTGTCCACTTTAGAAGTCTGGCTGAGACCACCTGTTAGCAATTAACCTTTTCCACAGGCAGAGCAGATATCGTTTTTC
1041 AAAGACAGGATGGAGGGCACAGAGGTGAAGGATACTTGTCCACACTTGAAGTGCACAGTGCTATCACCACTACTGGTGAC
1121 CCCTGGCTCGGGAATGAGCTCAGTTGGTTTTCTGAATGTTTGTCAATTACTCTGTTTCCCTAAAGTTTGTGGGGAGGACT
1201 CCCACAGTCTGCCACAAGCAAGCATCACCATCTCCACTTGCTACCTACATCTGGACCAGTGCTCCCCCTCTGCCCCCAGG
1281 CCTGAGCTCATCCTGAGCTAGTGATGCCAGTGTCCAGAGCACATGGAGTGACCCTCTGAGTGCCGAGTGCTTAGGCAGAG
1361 CTGCCGTGCTCTGAACTTGAGCTCTGGTGGGGCTCCCAGCTCCATCATGCATGGTGACTAGGGGAAAGATGGGGCTGGCC
1441 CAGGACTCATGCTGAAAGAGAAATTCAATCTAACAAGGCCCATATTAATTATATTAACCCGGGAAATATGATGATGAGCA
1521 AGAAAGGAGCTTATGATTCATTTTATGAGAAGGATAAGCTCCCAAGTCATTACAGCATAGGAAGAACTCTAGAGCCACAA
1601 GAGATGCTTCCTGATGTCAGGGGGTTGGTGAGGAGAATATCATGCCAAGCTGGCCAGGTCAGGGAAAGAAGGTGACATTC
1681 ATGTTGATGTTGAAGGAGGTATAGGATTTCAGCGGAGCAGGGATGGAGCAACAGGGAGAGAGAGAGGACAGAGAAACAGC
1761 ATAAGTGAAAGCAGAGAGGCGGGAAATAATCTTCATAACAATAGTCACTTATAGAAGACCTATCAGCAAATGGACTGTAC
1841 TGTTCACATACAGATGCTCATGGTAGGATGTGTCTAAGATTCCAATGGAGTGAAATTTTCCTGTGGCAGGCCAGATGGAA
1921 CTAATCTAGAAGAACTCAGGTGGTGGCAGGTTCAGGAGGCTTAGGACTCAACTCTTACTTAAACTTTGATTAGCTATGGT
2001 GGGATGGATTTGAGCAGAACAAGATGGGATTGCAGATGTGCTTTAGGAGGACTTGCCTAGCAGATGTAGCAAAGTCTGAA
2081 AGGAAGAATCTGGGAGTCCGGAGTCTTAAGCCTGGAAAACCAGAGGAATCGGGCATCATTGACAGAAGTAGGAAAGTCAA
2161 GAGCAGGCTTGGATGATGCAGAGCTTAGTTTTCTGTGTGTTTGGAATCATCAGGCAGAGAGGTCTAGCAGATAGCTAGAG
2241 ATGTGGGTTAGCAGAGTGTTGAGGGCTGGAGAGGAATGTGTGTAGAGAGATTAACTGGAACCCAGCAAGAAGTGAAAACA
2321 TGGAGGGAAGAGTTCAGAACCAAGGACAGAGCCCTCGGGGCACCTGCATTTAAAGACAAAGGGTAGGAGGAAGACATTGA
2401 TCAAGGTGCTGGAGCAGAATCAAACAGGTGGAAGATGAGAAGTCAAGAGCCATGAATGTTTCAAGGAGGAGAGCAGAGCT
2481 AGAGAGGTGGAGGAGGACCGGGATTGAGAGGAGGCTATTGAACTTATCATTCACAAGGTCACTAATGAAGTTCAGAAGAG
2561 CAGATCAACAGAGCAATGACAGCAGAAGCCAGAAGAGAAGAGTTAAGAAAGAGTAGACAGATGGCAGACAGCAGGTGCAG
2641 GAGAAACAAACAGTGGCTTCTCCATGCTTTGAATTTTCCCTTCTCCCTTACTCCCTTTTTTTCCCCTATTCTTCCTTTCT
2721 TTTTTCCCTTTATTTACTCATTCATTCAATAAACTTTTATTGTGTGTCTA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acaUGUCGUCCGU-----GUCUGUCc 5'
             | ||:|| ||     ||||||| 
Target 5' gaaAGAGTAGACAGATGGCAGACAGc 3'
2607 - 2632 154.00 -14.80
2
miRNA  3' acaugucguccGUGUCUGUCc 5'
                     ::||||||| 
Target 5' tacctccttccTGCAGACAGg 3'
554 - 574 142.00 -14.10
3
miRNA  3' acAUGUCGUCCGUGUCUGUCc 5'
            |:::|||||| ||||::| 
Target 5' ccTGTGGCAGGC-CAGATGGa 3'
1900 - 1919 138.00 -22.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30452167 2 COSMIC
COSN30103913 15 COSMIC
COSN31499649 17 COSMIC
COSN30461874 20 COSMIC
COSN30168073 26 COSMIC
COSN30489117 35 COSMIC
COSN13745484 36 COSMIC
COSN30523407 49 COSMIC
COSN18740637 50 COSMIC
COSN8407584 61 COSMIC
COSN30479250 63 COSMIC
COSN26969868 72 COSMIC
COSN30191346 80 COSMIC
COSN30474280 81 COSMIC
COSN24502538 210 COSMIC
COSN5420590 255 COSMIC
COSN17018906 400 COSMIC
COSN9322579 408 COSMIC
COSN16170376 429 COSMIC
COSN23358431 430 COSMIC
COSN9322578 453 COSMIC
COSN20714641 561 COSMIC
COSN32062867 578 COSMIC
COSN21904746 819 COSMIC
COSN17020571 920 COSMIC
COSN7455233 1082 COSMIC
COSN25765648 1345 COSMIC
COSN25759518 1368 COSMIC
COSN15204678 1377 COSMIC
COSN9322577 1481 COSMIC
COSN9673821 1902 COSMIC
COSN24852448 1966 COSMIC
COSN20157158 2264 COSMIC
COSN9322576 2385 COSMIC
COSN15874348 2527 COSMIC
COSN2493793 2761 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs537291363 3 dbSNP
rs568259090 4 dbSNP
rs771522685 6 dbSNP
rs370418416 9 dbSNP
rs148476840 14 dbSNP
rs202028310 15 dbSNP
rs1244457867 20 dbSNP
rs777931016 21 dbSNP
rs756510504 22 dbSNP
rs748265231 24 dbSNP
rs1406153536 27 dbSNP
rs1330019069 28 dbSNP
rs539530420 30 dbSNP
rs781595532 32 dbSNP
rs755077688 33 dbSNP
rs373961961 34 dbSNP
rs757209608 36 dbSNP
rs1189532138 38 dbSNP
rs963227873 40 dbSNP
rs753819799 41 dbSNP
rs1389622022 42 dbSNP
rs763739067 46 dbSNP
rs907827337 48 dbSNP
rs145674740 49 dbSNP
rs376276549 50 dbSNP
rs1445975546 55 dbSNP
rs1337347187 56 dbSNP
rs552232236 63 dbSNP
rs1030477161 87 dbSNP
rs995903430 90 dbSNP
rs964471334 91 dbSNP
rs144402090 93 dbSNP
rs1011285834 98 dbSNP
rs1408647268 99 dbSNP
rs1456774772 102 dbSNP
rs892034226 109 dbSNP
rs1053400891 110 dbSNP
rs1029273287 118 dbSNP
rs1335757343 119 dbSNP
rs550570288 120 dbSNP
rs1416707092 122 dbSNP
rs1475362868 125 dbSNP
rs907344282 127 dbSNP
rs1044553038 128 dbSNP
rs948769380 131 dbSNP
rs1461388905 133 dbSNP
rs545487450 135 dbSNP
rs920016004 144 dbSNP
rs763906744 148 dbSNP
rs892428238 149 dbSNP
rs1394038569 150 dbSNP
rs1030957586 151 dbSNP
rs1473543574 153 dbSNP
rs940061066 155 dbSNP
rs1295159017 156 dbSNP
rs1004068560 161 dbSNP
rs1480334507 170 dbSNP
rs907772634 175 dbSNP
rs1212505456 177 dbSNP
rs948220979 184 dbSNP
rs1278374471 185 dbSNP
rs190605011 190 dbSNP
rs1331882302 193 dbSNP
rs1189666526 197 dbSNP
rs762684518 200 dbSNP
rs1420773309 204 dbSNP
rs954807902 205 dbSNP
rs1170587111 209 dbSNP
rs140517260 210 dbSNP
rs775229440 217 dbSNP
rs1464535192 219 dbSNP
rs1172706740 221 dbSNP
rs531088736 229 dbSNP
rs974581790 231 dbSNP
rs1415570268 243 dbSNP
rs964453693 250 dbSNP
rs1285664609 254 dbSNP
rs1381716509 263 dbSNP
rs1445367660 264 dbSNP
rs987144092 265 dbSNP
rs189152820 266 dbSNP
rs1321010996 267 dbSNP
rs1021417755 268 dbSNP
rs754826962 271 dbSNP
rs542084129 272 dbSNP
rs113753161 277 dbSNP
rs769353919 287 dbSNP
rs745332969 290 dbSNP
rs968490643 293 dbSNP
rs1263240396 298 dbSNP
rs573222731 299 dbSNP
rs1431328192 305 dbSNP
rs530539630 311 dbSNP
rs1021500425 321 dbSNP
rs147154519 324 dbSNP
rs113947931 329 dbSNP
rs143547794 330 dbSNP
rs1364212678 332 dbSNP
rs1439282472 350 dbSNP
rs1471945141 359 dbSNP
rs1372417569 363 dbSNP
rs1236956113 368 dbSNP
rs1003527605 372 dbSNP
rs1242719066 375 dbSNP
rs1315903014 384 dbSNP
rs1189660460 386 dbSNP
rs866045659 388 dbSNP
rs1466514254 389 dbSNP
rs1487204237 390 dbSNP
rs1266844774 392 dbSNP
rs28670313 394 dbSNP
rs55888228 396 dbSNP
rs939998567 398 dbSNP
rs1160138134 399 dbSNP
rs55993417 400 dbSNP
rs1291425841 401 dbSNP
rs201691992 402 dbSNP
rs933218997 403 dbSNP
rs1369935489 404 dbSNP
rs868826109 404 dbSNP
rs1212507074 406 dbSNP
rs1224731995 406 dbSNP
rs1273283395 406 dbSNP
rs1308652042 406 dbSNP
rs1332304021 406 dbSNP
rs148872036 406 dbSNP
rs1491097435 406 dbSNP
rs62086679 406 dbSNP
rs1491341459 407 dbSNP
rs1037077392 408 dbSNP
rs1418674509 408 dbSNP
rs55895807 408 dbSNP
rs778439556 408 dbSNP
rs1354506785 410 dbSNP
rs755923307 410 dbSNP
rs756596395 410 dbSNP
rs867839302 410 dbSNP
rs1443377056 412 dbSNP
rs1482952478 412 dbSNP
rs71375236 412 dbSNP
rs1437078933 413 dbSNP
rs1232306067 414 dbSNP
rs557473102 414 dbSNP
rs879483778 414 dbSNP
rs1206347091 416 dbSNP
rs1272167629 416 dbSNP
rs1484777221 416 dbSNP
rs1245683327 418 dbSNP
rs868466751 418 dbSNP
rs1166290035 420 dbSNP
rs1362763169 420 dbSNP
rs146857802 421 dbSNP
rs1419405699 422 dbSNP
rs1319567070 423 dbSNP
rs141848532 423 dbSNP
rs1458358611 425 dbSNP
rs1351495432 426 dbSNP
rs1413737369 426 dbSNP
rs55826441 427 dbSNP
rs1357020787 428 dbSNP
rs1428035202 428 dbSNP
rs1216264497 429 dbSNP
rs1269142156 429 dbSNP
rs1277878741 429 dbSNP
rs1281296854 429 dbSNP
rs1339934746 429 dbSNP
rs1346849534 429 dbSNP
rs55701027 429 dbSNP
rs1241600022 430 dbSNP
rs1031300047 431 dbSNP
rs1188822563 431 dbSNP
rs1403648143 431 dbSNP
rs1384901794 433 dbSNP
rs763043366 433 dbSNP
rs767056953 433 dbSNP
rs981515082 433 dbSNP
rs1189441582 434 dbSNP
rs1316942939 435 dbSNP
rs1451799550 435 dbSNP
rs143767680 436 dbSNP
rs906627312 436 dbSNP
rs543553691 437 dbSNP
rs1186238322 439 dbSNP
rs1370238540 440 dbSNP
rs1234727104 441 dbSNP
rs1305370206 442 dbSNP
rs1023208489 444 dbSNP
rs1489107886 449 dbSNP
rs1203642895 450 dbSNP
rs1248928446 451 dbSNP
rs1013027920 452 dbSNP
rs1342459728 452 dbSNP
rs143689388 452 dbSNP
rs564622160 452 dbSNP
rs1012836461 455 dbSNP
rs1194597962 455 dbSNP
rs183716781 458 dbSNP
rs1358083755 459 dbSNP
rs1385268562 462 dbSNP
rs1274984688 463 dbSNP
rs1401930836 470 dbSNP
rs1323371850 471 dbSNP
rs1393562022 477 dbSNP
rs1305179470 478 dbSNP
rs60354454 483 dbSNP
rs1004272042 489 dbSNP
rs1339562404 492 dbSNP
rs887199681 494 dbSNP
rs940952713 504 dbSNP
rs1051066371 528 dbSNP
rs1351759312 530 dbSNP
rs1230289313 543 dbSNP
rs886675309 544 dbSNP
rs534895899 546 dbSNP
rs934018268 547 dbSNP
rs566016438 556 dbSNP
rs1269856014 560 dbSNP
rs558579542 562 dbSNP
rs1181621738 567 dbSNP
rs1369693302 584 dbSNP
rs1473373932 603 dbSNP
rs921685861 605 dbSNP
rs1416566810 616 dbSNP
rs1461851433 619 dbSNP
rs1038743440 625 dbSNP
rs866147559 626 dbSNP
rs538677512 631 dbSNP
rs116746771 632 dbSNP
rs1390602708 633 dbSNP
rs1434476519 635 dbSNP
rs943283667 636 dbSNP
rs914377892 643 dbSNP
rs1291475311 647 dbSNP
rs990396008 653 dbSNP
rs934386634 656 dbSNP
rs1267749632 659 dbSNP
rs766116395 659 dbSNP
rs1338077803 665 dbSNP
rs924397295 668 dbSNP
rs549809660 674 dbSNP
rs765779073 691 dbSNP
rs970717286 705 dbSNP
rs971502275 713 dbSNP
rs1434097178 721 dbSNP
rs1023157681 722 dbSNP
rs115497057 731 dbSNP
rs962945215 741 dbSNP
rs1251924620 742 dbSNP
rs1372216806 752 dbSNP
rs1206615512 769 dbSNP
rs1017025483 772 dbSNP
rs990462786 778 dbSNP
rs1355111924 785 dbSNP
rs1415458701 788 dbSNP
rs1005033526 797 dbSNP
rs1227380886 801 dbSNP
rs886704639 801 dbSNP
rs1051988448 804 dbSNP
rs116250305 816 dbSNP
rs900206808 817 dbSNP
rs1313728041 822 dbSNP
rs887190322 823 dbSNP
rs479782 824 dbSNP
rs998178175 832 dbSNP
rs1218585299 837 dbSNP
rs914304795 842 dbSNP
rs1193842222 848 dbSNP
rs1052901163 855 dbSNP
rs934463316 857 dbSNP
rs1172842641 858 dbSNP
rs1308741394 861 dbSNP
rs928547599 887 dbSNP
rs1382909123 895 dbSNP
rs777108019 895 dbSNP
rs981340493 899 dbSNP
rs1296881364 903 dbSNP
rs1368053157 925 dbSNP
rs34745116 929 dbSNP
rs1411698582 931 dbSNP
rs758703548 932 dbSNP
rs899809597 933 dbSNP
rs970375079 937 dbSNP
rs1348074265 938 dbSNP
rs528744036 939 dbSNP
rs943231155 940 dbSNP
rs916616530 943 dbSNP
rs1485248261 947 dbSNP
rs192236202 948 dbSNP
rs1054290894 960 dbSNP
rs1452513512 966 dbSNP
rs1192699454 967 dbSNP
rs560519026 968 dbSNP
rs1480409417 973 dbSNP
rs934524945 982 dbSNP
rs1178474956 984 dbSNP
rs150712979 988 dbSNP
rs1045916116 990 dbSNP
rs1183763655 992 dbSNP
rs1005063080 995 dbSNP
rs949823391 1003 dbSNP
rs950874006 1007 dbSNP
rs1439347490 1008 dbSNP
rs1325604311 1014 dbSNP
rs915549442 1019 dbSNP
rs186189327 1030 dbSNP
rs991122956 1033 dbSNP
rs1304379667 1034 dbSNP
rs1316041017 1074 dbSNP
rs997813233 1075 dbSNP
rs900737490 1084 dbSNP
rs1467050902 1087 dbSNP
rs1213011814 1091 dbSNP
rs563541267 1101 dbSNP
rs1489321105 1108 dbSNP
rs962896048 1113 dbSNP
rs755106827 1120 dbSNP
rs1202749267 1122 dbSNP
rs910166439 1126 dbSNP
rs1418736088 1129 dbSNP
rs141175280 1130 dbSNP
rs753840590 1138 dbSNP
rs1029849585 1141 dbSNP
rs1230368988 1153 dbSNP
rs767530409 1157 dbSNP
rs575005828 1162 dbSNP
rs1351019378 1170 dbSNP
rs1439052408 1197 dbSNP
rs868503296 1203 dbSNP
rs1372071067 1211 dbSNP
rs1045966279 1224 dbSNP
rs1404555128 1225 dbSNP
rs1332000671 1239 dbSNP
rs757257726 1243 dbSNP
rs1290497208 1247 dbSNP
rs1323491401 1257 dbSNP
rs1202108293 1261 dbSNP
rs948690568 1264 dbSNP
rs114748416 1265 dbSNP
rs578102301 1268 dbSNP
rs114095464 1273 dbSNP
rs893052544 1274 dbSNP
rs909299490 1275 dbSNP
rs571605086 1281 dbSNP
rs115349812 1285 dbSNP
rs181581621 1286 dbSNP
rs386799175 1287 dbSNP
rs1354335154 1290 dbSNP
rs114678634 1291 dbSNP
rs769078702 1298 dbSNP
rs976637327 1300 dbSNP
rs1284292023 1301 dbSNP
rs1425214741 1306 dbSNP
rs1212767767 1312 dbSNP
rs555908714 1313 dbSNP
rs751458957 1328 dbSNP
rs535920410 1332 dbSNP
rs1045582428 1344 dbSNP
rs114070901 1352 dbSNP
rs892762533 1360 dbSNP
rs370609492 1365 dbSNP
rs1187245070 1366 dbSNP
rs528706931 1368 dbSNP
rs1474029812 1370 dbSNP
rs1055386076 1374 dbSNP
rs1419472241 1388 dbSNP
rs941058105 1392 dbSNP
rs1170936898 1395 dbSNP
rs910116164 1397 dbSNP
rs1373180572 1398 dbSNP
rs1433720152 1405 dbSNP
rs1260242385 1409 dbSNP
rs998647669 1411 dbSNP
rs763996896 1414 dbSNP
rs1360412149 1418 dbSNP
rs148374025 1420 dbSNP
rs1365928913 1422 dbSNP
rs1452444277 1426 dbSNP
rs747503718 1431 dbSNP
rs1230324262 1433 dbSNP
rs532707910 1436 dbSNP
rs1322893006 1450 dbSNP
rs922725480 1453 dbSNP
rs1381037588 1455 dbSNP
rs1200112461 1466 dbSNP
rs1279662117 1478 dbSNP
rs563669395 1479 dbSNP
rs1038254470 1481 dbSNP
rs1247935683 1482 dbSNP
rs543488429 1483 dbSNP
rs1458969819 1494 dbSNP
rs752430466 1498 dbSNP
rs1393691692 1499 dbSNP
rs909247184 1500 dbSNP
rs983439576 1501 dbSNP
rs1018402758 1503 dbSNP
rs1398450358 1506 dbSNP
rs1317097298 1511 dbSNP
rs1010901012 1512 dbSNP
rs1323584190 1530 dbSNP
rs1162527232 1534 dbSNP
rs146155846 1538 dbSNP
rs540468799 1539 dbSNP
rs929429541 1546 dbSNP
rs923326781 1548 dbSNP
rs142905826 1558 dbSNP
rs1251734063 1560 dbSNP
rs965207666 1562 dbSNP
rs1200107618 1566 dbSNP
rs1248083433 1568 dbSNP
rs138433086 1576 dbSNP
rs1157418059 1577 dbSNP
rs1412090254 1578 dbSNP
rs1458399647 1580 dbSNP
rs1162660791 1600 dbSNP
rs999152219 1608 dbSNP
rs990399954 1616 dbSNP
rs1387122019 1620 dbSNP
rs533239376 1622 dbSNP
rs116651726 1625 dbSNP
rs1440331735 1627 dbSNP
rs998905089 1632 dbSNP
rs1329909205 1635 dbSNP
rs377447134 1636 dbSNP
rs1271824021 1638 dbSNP
rs114872452 1652 dbSNP
rs894222106 1654 dbSNP
rs564268720 1658 dbSNP
rs764751352 1664 dbSNP
rs1300296423 1675 dbSNP
rs941131188 1683 dbSNP
rs1326403540 1684 dbSNP
rs372161837 1698 dbSNP
rs1005502668 1713 dbSNP
rs545262277 1714 dbSNP
rs1046732257 1718 dbSNP
rs1363169810 1719 dbSNP
rs772257625 1722 dbSNP
rs35627988 1726 dbSNP
rs1394097202 1732 dbSNP
rs1430023689 1733 dbSNP
rs929269963 1735 dbSNP
rs1351408003 1736 dbSNP
rs922916065 1740 dbSNP
rs1291532767 1741 dbSNP
rs976909173 1748 dbSNP
rs1040818849 1759 dbSNP
rs368988285 1771 dbSNP
rs745932738 1779 dbSNP
rs185537305 1780 dbSNP
rs1378190462 1781 dbSNP
rs927664945 1787 dbSNP
rs1274890641 1795 dbSNP
rs990263428 1799 dbSNP
rs1200911629 1803 dbSNP
rs1449730237 1808 dbSNP
rs957638018 1811 dbSNP
rs958164393 1831 dbSNP
rs1424273795 1835 dbSNP
rs1031386036 1836 dbSNP
rs1371307240 1852 dbSNP
rs775995971 1859 dbSNP
rs771523719 1862 dbSNP
rs1169050556 1873 dbSNP
rs145671851 1877 dbSNP
rs1431873164 1879 dbSNP
rs1301111344 1888 dbSNP
rs1401618102 1889 dbSNP
rs148950352 1890 dbSNP
rs1339127968 1896 dbSNP
rs1023971905 1919 dbSNP
rs1014023802 1921 dbSNP
rs578460 1925 dbSNP
rs1369281153 1926 dbSNP
rs866010129 1932 dbSNP
rs575565960 1935 dbSNP
rs1231664938 1943 dbSNP
rs533648438 1946 dbSNP
rs1255093072 1964 dbSNP
rs1483277602 1966 dbSNP
rs1344118996 1987 dbSNP
rs1034158957 1999 dbSNP
rs1464388627 2006 dbSNP
rs1282124508 2015 dbSNP
rs1391804341 2016 dbSNP
rs371448381 2027 dbSNP
rs1174176159 2028 dbSNP
rs887036458 2030 dbSNP
rs1466616432 2031 dbSNP
rs115591769 2032 dbSNP
rs1047165615 2040 dbSNP
rs993515447 2041 dbSNP
rs1367755694 2047 dbSNP
rs901877472 2051 dbSNP
rs1300150750 2052 dbSNP
rs1040365577 2057 dbSNP
rs943483677 2066 dbSNP
rs552517068 2069 dbSNP
rs1328325698 2070 dbSNP
rs901407777 2081 dbSNP
rs539295858 2083 dbSNP
rs1054567231 2093 dbSNP
rs936139974 2099 dbSNP
rs942951773 2100 dbSNP
rs1190478451 2123 dbSNP
rs924894448 2125 dbSNP
rs570296204 2130 dbSNP
rs1174056119 2133 dbSNP
rs138836886 2134 dbSNP
rs971665455 2138 dbSNP
rs530072413 2142 dbSNP
rs1456817255 2143 dbSNP
rs1160524980 2145 dbSNP
rs1179594412 2151 dbSNP
rs936711934 2164 dbSNP
rs924088704 2170 dbSNP
rs978491162 2171 dbSNP
rs1472948703 2177 dbSNP
rs958460923 2183 dbSNP
rs1388172552 2188 dbSNP
rs773640764 2189 dbSNP
rs1285860524 2196 dbSNP
rs1349299847 2201 dbSNP
rs867599190 2203 dbSNP
rs1202694737 2204 dbSNP
rs1016663680 2206 dbSNP
rs1220485864 2208 dbSNP
rs970782910 2215 dbSNP
rs1265836616 2221 dbSNP
rs150193116 2223 dbSNP
rs1193104180 2232 dbSNP
rs1249952117 2245 dbSNP
rs1024949751 2256 dbSNP
rs868579599 2273 dbSNP
rs772454430 2274 dbSNP
rs1414746146 2276 dbSNP
rs1202499193 2279 dbSNP
rs1164455950 2282 dbSNP
rs1350861086 2290 dbSNP
rs555597429 2295 dbSNP
rs1025471654 2298 dbSNP
rs555542 2300 dbSNP
rs901075246 2301 dbSNP
rs1005421476 2302 dbSNP
rs1289698183 2310 dbSNP
rs768729259 2311 dbSNP
rs1227704879 2312 dbSNP
rs888183221 2314 dbSNP
rs1313401654 2320 dbSNP
rs1351794682 2321 dbSNP
rs1202833694 2331 dbSNP
rs371630330 2336 dbSNP
rs1482854140 2337 dbSNP
rs1277196110 2338 dbSNP
rs889208881 2341 dbSNP
rs140959768 2347 dbSNP
rs2280178 2356 dbSNP
rs936087669 2357 dbSNP
rs573131802 2360 dbSNP
rs1468012576 2361 dbSNP
rs777575468 2362 dbSNP
rs1167109890 2372 dbSNP
rs1041877578 2381 dbSNP
rs1430028479 2385 dbSNP
rs1309276692 2394 dbSNP
rs1392084233 2396 dbSNP
rs950374126 2397 dbSNP
rs991164694 2402 dbSNP
rs554592 2420 dbSNP
rs1225817129 2425 dbSNP
rs576275567 2426 dbSNP
rs1296615228 2434 dbSNP
rs890044306 2437 dbSNP
rs1229448587 2438 dbSNP
rs1053956267 2444 dbSNP
rs751550573 2447 dbSNP
rs77437205 2449 dbSNP
rs767353070 2452 dbSNP
rs542516250 2468 dbSNP
rs1440745780 2471 dbSNP
rs983910211 2472 dbSNP
rs1457901407 2477 dbSNP
rs951153156 2482 dbSNP
rs1175503150 2487 dbSNP
rs1469844158 2492 dbSNP
rs180906788 2499 dbSNP
rs570532281 2501 dbSNP
rs976593815 2506 dbSNP
rs965691970 2510 dbSNP
rs777817251 2513 dbSNP
rs1422694847 2519 dbSNP
rs1460248489 2523 dbSNP
rs990782696 2527 dbSNP
rs1209911939 2533 dbSNP
rs557105959 2536 dbSNP
rs144521330 2537 dbSNP
rs1319596355 2538 dbSNP
rs1365619596 2550 dbSNP
rs927245503 2555 dbSNP
rs1272127273 2557 dbSNP
rs1343217176 2558 dbSNP
rs1218666804 2559 dbSNP
rs1279456069 2564 dbSNP
rs1326229005 2571 dbSNP
rs1207354622 2573 dbSNP
rs1248006029 2574 dbSNP
rs1032969601 2578 dbSNP
rs577691402 2583 dbSNP
rs766571802 2588 dbSNP
rs1244553004 2596 dbSNP
rs952598165 2597 dbSNP
rs537003541 2601 dbSNP
rs115472585 2603 dbSNP
rs1381768358 2609 dbSNP
rs570238035 2611 dbSNP
rs765003651 2617 dbSNP
rs965134881 2618 dbSNP
rs1019255274 2620 dbSNP
rs1389356532 2628 dbSNP
rs1006600586 2631 dbSNP
rs890034394 2632 dbSNP
rs1054072108 2636 dbSNP
rs1458610510 2644 dbSNP
rs550458460 2647 dbSNP
rs1001424027 2655 dbSNP
rs3178891 2657 dbSNP
rs34587736 2664 dbSNP
rs1436069202 2678 dbSNP
rs902650468 2685 dbSNP
rs1343320138 2687 dbSNP
rs1275709481 2689 dbSNP
rs1042957653 2695 dbSNP
rs79564185 2702 dbSNP
rs374649257 2703 dbSNP
rs1207203832 2707 dbSNP
rs983774362 2726 dbSNP
rs1450642365 2727 dbSNP
rs1414868687 2737 dbSNP
rs1165699228 2739 dbSNP
rs1442936728 2745 dbSNP
rs929737801 2748 dbSNP
rs918317989 2749 dbSNP
rs1180905638 2755 dbSNP
rs1189559626 2759 dbSNP
rs1412530107 2760 dbSNP
rs567636937 2762 dbSNP
rs142141621 2768 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293/HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1067869. RNA binding protein: AGO2. Condition:Ago2 IP-seq (asynchronous cells) HITS-CLIP data was present in GSM1067870. RNA binding protein: AGO2. Condition:Ago2 IP-seq (mitotic cells) ...

- Kishore S; Gruber AR; Jedlinski DJ; Syed et al., 2013, Genome biology.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' acaUGUCGUCCGUGUCUGUCc 5'
             | || ||  | |||||| 
Target 5' gagAGAG-AGAGAGAGACAG- 3'
2 - 20
Article - Kishore S; Gruber AR; Jedlinski DJ; Syed et al.
- Genome biology, 2013
BACKGROUND: In recent years, a variety of small RNAs derived from other RNAs with well-known functions such as tRNAs and snoRNAs, have been identified. The functional relevance of these RNAs is largely unknown. To gain insight into the complexity of snoRNA processing and the functional relevance of snoRNA-derived small RNAs, we sequence long and short RNAs, small RNAs that co-precipitate with the Argonaute 2 protein and RNA fragments obtained in photoreactive nucleotide-enhanced crosslinking and immunoprecipitation (PAR-CLIP) of core snoRNA-associated proteins. RESULTS: Analysis of these data sets reveals that many loci in the human genome reproducibly give rise to C/D box-like snoRNAs, whose expression and evolutionary conservation are typically less pronounced relative to the snoRNAs that are currently cataloged. We further find that virtually all C/D box snoRNAs are specifically processed inside the regions of terminal complementarity, retaining in the mature form only 4-5 nucleotides upstream of the C box and 2-5 nucleotides downstream of the D box. Sequencing of the total and Argonaute 2-associated populations of small RNAs reveals that despite their cellular abundance, C/D box-derived small RNAs are not efficiently incorporated into the Ago2 protein. CONCLUSIONS: We conclude that the human genome encodes a large number of snoRNAs that are processed along the canonical pathway and expressed at relatively low levels. Generation of snoRNA-derived processing products with alternative, particularly miRNA-like, functions appears to be uncommon.
LinkOut: [PMID: 23706177]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084044. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep3 HITS-CLIP data was present in GSM1084045. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep3 HITS-CLIP data was present in GSM1084046. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep4 HITS-CLIP data was present in GSM1084047. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep4 HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb HITS-CLIP data was present in GSM1084066. RNA binding protein: AGO2. Condition:CLIP_noemetine_SantaCruzAb HITS-CLIP data was present in GSM1084067. RNA binding protein: AGO2. Condition:CLIP_emetine_SantaCruzAb HITS-CLIP data was present in GSM1084068. RNA binding protein: AGO2. Condition:CLIP_noemetine_SigmaAb HITS-CLIP data was present in GSM1084069. RNA binding protein: AGO2. Condition:CLIP_emetine_SigmaAb HITS-CLIP data was present in GSM1084072. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep1_AbnovaAb HITS-CLIP data was present in GSM1084073. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep1_AbnovaAb HITS-CLIP data was present in GSM1084074. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep1_SantaCruzAb HITS-CLIP data was present in GSM1084075. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep1_SantaCruzAb HITS-CLIP data was present in GSM1084076. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep1_SigmaAb HITS-CLIP data was present in GSM1084077. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep1_SigmaAb HITS-CLIP data was present in GSM1084078. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_AbnovaAb HITS-CLIP data was present in GSM1084079. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_AbnovaAb HITS-CLIP data was present in GSM1084080. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_SantaCruzAb HITS-CLIP data was present in GSM1084082. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_SigmaAb HITS-CLIP data was present in GSM1084083. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_SigmaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions MDA-MB-231
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1395169. RNA binding protein: AGO. Condition:MDA-MB-231 AGO HITS-CLIP Replicate 1 ...

- Pillai MM; Gillen AE; Yamamoto TM; Kline E; et al., 2014, Breast cancer research and treatment.

Article - Pillai MM; Gillen AE; Yamamoto TM; Kline E; et al.
- Breast cancer research and treatment, 2014
miRNAs regulate the expression of genes in both normal physiology and disease. While miRNAs have been demonstrated to play a pivotal role in aspects of cancer biology, these reports have generally focused on the regulation of single genes. Such single-gene approaches have significant limitations, relying on miRNA expression levels and heuristic predictions of mRNA-binding sites. This results in only circumstantial evidence of miRNA-target interaction and typically leads to large numbers of false positive predictions. Here, we used a genome-wide approach (high-throughput sequencing of RNA isolated by crosslinking immunoprecipitation, HITS-CLIP) to define direct miRNA-mRNA interactions in three breast cancer subtypes (estrogen receptor positive, Her2 amplified, and triple negative). Focusing on steroid receptor signaling, we identified two novel regulators of the ER pathway (miR-9-5p and miR-193a/b-3p), which together target multiple genes involved in ER signaling. Moreover, this approach enabled the definition of miR-9-5p as a global regulator of steroid receptor signaling in breast cancer. We show that miRNA targets and networks defined by HITS-CLIP under physiologic conditions are predictive of patient outcomes and provide global insight into miRNA regulation in breast cancer.
LinkOut: [PMID: 24906430]
Experimental Support 4 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Cardiac Tissues
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM2202477. RNA binding protein: AGO2. Condition:S2_LV_25yo_Male_AGO2_bound_RNA ...

- Spengler RM; Zhang X; Cheng C; McLendon JM; et al., 2016, Nucleic acids research.

Article - Spengler RM; Zhang X; Cheng C; McLendon JM; et al.
- Nucleic acids research, 2016
MicroRNAs (miRs) have emerged as key biological effectors in human health and disease. These small noncoding RNAs are incorporated into Argonaute (Ago) proteins, where they direct post-transcriptional gene silencing via base-pairing with target transcripts. Although miRs have become intriguing biological entities and attractive therapeutic targets, the translational impacts of miR research remain limited by a paucity of empirical miR targeting data, particularly in human primary tissues. Here, to improve our understanding of the diverse roles miRs play in cardiovascular function and disease, we applied high-throughput methods to globally profile miR:target interactions in human heart tissues. We deciphered Ago2:RNA interactions using crosslinking immunoprecipitation coupled with high-throughput sequencing (HITS-CLIP) to generate the first transcriptome-wide map of miR targeting events in human myocardium, detecting 4000 cardiac Ago2 binding sites across >2200 target transcripts. Our initial exploration of this interactome revealed an abundance of miR target sites in gene coding regions, including several sites pointing to new miR-29 functions in regulating cardiomyocyte calcium, growth and metabolism. Also, we uncovered several clinically-relevant interactions involving common genetic variants that alter miR targeting events in cardiomyopathy-associated genes. Overall, these data provide a critical resource for bolstering translational miR research in heart, and likely beyond.
LinkOut: [PMID: 27418678]
CLIP-seq Support 1 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_181449 | 3UTR | GAGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1067869
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293/HeLa / Ago2 IP-seq (asynchronous cells)
Location of target site ENST00000392619.1 | 3UTR | GAGAGAGAGAGAGAGAGAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23706177 / GSE43666
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1067870
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293/HeLa / Ago2 IP-seq (mitotic cells)
Location of target site ENST00000392619.1 | 3UTR | AGAGAGAGAGAGAGAGACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23706177 / GSE43666
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1084044
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep3
Location of target site ENST00000392619.1 | 3UTR | CAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM1084045
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep3
Location of target site ENST00000392619.1 | 3UTR | CUCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM1084045
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep3
Location of target site ENST00000392619.1 | 3UTR | AGAGAGAGAGAGAGAGAGAGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM1084046
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep4
Location of target site ENST00000392619.1 | 3UTR | CUCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM1084047
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep4
Location of target site ENST00000392619.1 | 3UTR | CUCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 9 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000392619.1 | 3UTR | CUCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 10 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000392619.1 | 3UTR | CUCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAAAAGGAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 11 for dataset GSM1084066
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_SantaCruzAb
Location of target site ENST00000392619.1 | 3UTR | GAGACAGAGAGAGAGAGAGAGAGAGAGCG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 12 for dataset GSM1084067
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_SantaCruzAb
Location of target site ENST00000392619.1 | 3UTR | CAGAGAGAGAGAGAGAGAGAGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 13 for dataset GSM1084068
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_SigmaAb
Location of target site ENST00000392619.1 | 3UTR | CAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAAAAGGAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 14 for dataset GSM1084069
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_SigmaAb
Location of target site ENST00000392619.1 | 3UTR | GAGAGCCCUGUCUCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 15 for dataset GSM1084072
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep1_AbnovaAb
Location of target site ENST00000392619.1 | 3UTR | UCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGCGAGAGAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 16 for dataset GSM1084073
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep1_AbnovaAb
Location of target site ENST00000392619.1 | 3UTR | CAUAGAGAGCCCUGUCUCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 17 for dataset GSM1084074
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep1_SantaCruzAb
Location of target site ENST00000392619.1 | 3UTR | CAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 18 for dataset GSM1084075
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep1_SantaCruzAb
Location of target site ENST00000392619.1 | 3UTR | AGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 19 for dataset GSM1084076
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep1_SigmaAb
Location of target site ENST00000392619.1 | 3UTR | CAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 20 for dataset GSM1084077
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep1_SigmaAb
Location of target site ENST00000392619.1 | 3UTR | GAGAGAGAGAGAGAGAGAGAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 21 for dataset GSM1084078
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep2_AbnovaAb
Location of target site ENST00000392619.1 | 3UTR | CUCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 22 for dataset GSM1084079
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_AbnovaAb
Location of target site ENST00000392619.1 | 3UTR | CAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 23 for dataset GSM1084082
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep2_SigmaAb
Location of target site ENST00000392619.1 | 3UTR | CAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 24 for dataset GSM1084083
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_SigmaAb
Location of target site ENST00000392619.1 | 3UTR | CAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 25 for dataset GSM1395169
Method / RBP HITS-CLIP / AGO
Cell line / Condition MDA-MB-231 / MDA-MB-231 AGO HITS-CLIP Replicate 1
Location of target site ENST00000392619.1 | 3UTR | GAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 24906430 / GSE57855
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
134 hsa-miR-3120-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT096972 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT442624 LOX lysyl oxidase 2 2
MIRT473438 MDM4 MDM4, p53 regulator 2 2
MIRT490011 KIFC2 kinesin family member C2 2 2
MIRT496449 N6AMT1 N-6 adenine-specific DNA methyltransferase 1 2 2
MIRT496752 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT497721 CYP1A1 cytochrome P450 family 1 subfamily A member 1 2 2
MIRT498287 PADI3 peptidyl arginine deiminase 3 2 2
MIRT503195 ACVR1B activin A receptor type 1B 2 4
MIRT504760 TEP1 telomerase associated protein 1 2 4
MIRT517810 UGDH UDP-glucose 6-dehydrogenase 2 6
MIRT519686 ZNF622 zinc finger protein 622 2 4
MIRT520263 URGCP upregulator of cell proliferation 2 2
MIRT523051 ICMT isoprenylcysteine carboxyl methyltransferase 2 2
MIRT525601 OLR1 oxidized low density lipoprotein receptor 1 2 4
MIRT526995 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT528699 TRAF3IP2 TRAF3 interacting protein 2 2 4
MIRT533142 WNT10A Wnt family member 10A 2 2
MIRT537618 ERI1 exoribonuclease 1 2 2
MIRT539707 EIF3H eukaryotic translation initiation factor 3 subunit H 2 2
MIRT539752 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT539808 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT539941 IFNAR2 interferon alpha and beta receptor subunit 2 2 2
MIRT540424 FAM83F family with sequence similarity 83 member F 2 2
MIRT540509 CXCL10 C-X-C motif chemokine ligand 10 2 2
MIRT540720 GUF1 GUF1 homolog, GTPase 2 2
MIRT541630 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT542286 POLR3K RNA polymerase III subunit K 2 2
MIRT542456 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT542550 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT542771 PPAP2B phospholipid phosphatase 3 2 2
MIRT550085 TRAPPC2 trafficking protein particle complex 2 2 2
MIRT551458 CARKD NAD(P)HX dehydratase 2 2
MIRT555622 PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 2 2
MIRT569136 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT572328 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT574607 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT575583 Mcm8 minichromosome maintenance 8 homologous recombination repair factor 2 4
MIRT576125 Hrk harakiri, BCL2 interacting protein (contains only BH3 domain) 2 5
MIRT576657 Fam216a family with sequence similarity 216, member A 2 2
MIRT607222 ACSM2A acyl-CoA synthetase medium chain family member 2A 2 4
MIRT607292 CD300E CD300e molecule 2 6
MIRT607746 ANGPT4 angiopoietin 4 2 2
MIRT607905 SPRYD4 SPRY domain containing 4 2 2
MIRT608159 HRK harakiri, BCL2 interacting protein 2 7
MIRT608657 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT609115 ZNF703 zinc finger protein 703 2 6
MIRT610231 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT610870 NUDCD3 NudC domain containing 3 2 2
MIRT611217 MC2R melanocortin 2 receptor 2 2
MIRT614858 PLEKHA6 pleckstrin homology domain containing A6 2 2
MIRT616966 LMX1A LIM homeobox transcription factor 1 alpha 2 2
MIRT617258 GLIPR1L2 GLI pathogenesis related 1 like 2 2 2
MIRT618009 SLC9A3R2 SLC9A3 regulator 2 2 2
MIRT619067 BSND barttin CLCNK type accessory beta subunit 2 4
MIRT619295 FAM26E calcium homeostasis modulator family member 5 2 2
MIRT619348 GINM1 glycoprotein integral membrane 1 2 2
MIRT619362 CFHR5 complement factor H related 5 2 2
MIRT619541 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT619782 NRIP2 nuclear receptor interacting protein 2 2 2
MIRT619994 NPAP1 nuclear pore associated protein 1 2 2
MIRT621030 CDC14B cell division cycle 14B 2 2
MIRT622033 STAT5A signal transducer and activator of transcription 5A 2 2
MIRT622728 PITPNM3 PITPNM family member 3 2 2
MIRT623144 NAV2 neuron navigator 2 2 2
MIRT623600 IPO9 importin 9 2 2
MIRT624608 B3GALT5 beta-1,3-galactosyltransferase 5 2 2
MIRT624905 CTCFL CCCTC-binding factor like 2 2
MIRT625030 SPC24 SPC24, NDC80 kinetochore complex component 2 2
MIRT625688 MCM8 minichromosome maintenance 8 homologous recombination repair factor 2 5
MIRT626531 EMCN endomucin 2 2
MIRT627204 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT628033 LSAMP limbic system-associated membrane protein 2 2
MIRT628203 FREM2 FRAS1 related extracellular matrix protein 2 2 2
MIRT631012 LINS lines homolog 1 2 2
MIRT633195 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 2
MIRT633890 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT634023 MOB4 MOB family member 4, phocein 2 2
MIRT634416 PLCXD3 phosphatidylinositol specific phospholipase C X domain containing 3 2 2
MIRT636866 ARSE arylsulfatase E (chondrodysplasia punctata 1) 2 2
MIRT642527 ANKRD9 ankyrin repeat domain 9 2 2
MIRT645408 FAM110A family with sequence similarity 110 member A 2 2
MIRT645635 SYTL4 synaptotagmin like 4 2 2
MIRT646013 TNFAIP8L2 TNF alpha induced protein 8 like 2 2 2
MIRT646686 ASGR2 asialoglycoprotein receptor 2 2 2
MIRT652838 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT655156 PHF21B PHD finger protein 21B 2 2
MIRT658491 EXOC7 exocyst complex component 7 2 2
MIRT659398 CORO2A coronin 2A 2 2
MIRT666825 PRCP prolylcarboxypeptidase 2 2
MIRT666866 POU2F2 POU class 2 homeobox 2 2 2
MIRT668224 GABRA1 gamma-aminobutyric acid type A receptor alpha1 subunit 2 2
MIRT673288 PDE3A phosphodiesterase 3A 2 2
MIRT673878 KLF2 Kruppel like factor 2 2 2
MIRT681721 KCNE4 potassium voltage-gated channel subfamily E regulatory subunit 4 2 2
MIRT682406 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT684109 MCM10 minichromosome maintenance 10 replication initiation factor 2 2
MIRT684423 TUFT1 tuftelin 1 2 2
MIRT684684 OR7D2 olfactory receptor family 7 subfamily D member 2 2 2
MIRT686638 TMEM184C transmembrane protein 184C 2 2
MIRT689457 NXN nucleoredoxin 2 2
MIRT689627 NAA30 N(alpha)-acetyltransferase 30, NatC catalytic subunit 2 2
MIRT690773 PLA2G2C phospholipase A2 group IIC 2 2
MIRT690822 SGSM2 small G protein signaling modulator 2 2 2
MIRT693669 MXRA7 matrix remodeling associated 7 2 2
MIRT695553 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT695872 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT698160 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT699933 RUFY2 RUN and FYVE domain containing 2 2 2
MIRT708639 UBE2W ubiquitin conjugating enzyme E2 W 2 2
MIRT710816 RAB11FIP4 RAB11 family interacting protein 4 2 2
MIRT711242 TRAT1 T-cell receptor associated transmembrane adaptor 1 2 2
MIRT711542 MSH3 mutS homolog 3 2 2
MIRT711749 DTX1 deltex E3 ubiquitin ligase 1 2 2
MIRT712303 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT712922 RPF2 ribosome production factor 2 homolog 2 2
MIRT714027 SYDE2 synapse defective Rho GTPase homolog 2 2 2
MIRT714768 TERF1 telomeric repeat binding factor 1 2 2
MIRT714844 ADAMTS17 ADAM metallopeptidase with thrombospondin type 1 motif 17 2 2
MIRT715223 NPVF neuropeptide VF precursor 2 2
MIRT716110 GMPS guanine monophosphate synthase 2 2
MIRT716174 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT716383 C6orf223 chromosome 6 open reading frame 223 2 2
MIRT716527 KSR2 kinase suppressor of ras 2 2 2
MIRT716962 P2RY6 pyrimidinergic receptor P2Y6 2 2
MIRT717605 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT717696 PTGS1 prostaglandin-endoperoxide synthase 1 2 2
MIRT721360 ENTHD1 ENTH domain containing 1 2 2
MIRT721381 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT721935 RASSF2 Ras association domain family member 2 2 2
MIRT722094 SUSD1 sushi domain containing 1 2 2
MIRT722837 C17orf102 chromosome 17 open reading frame 102 2 2
MIRT722990 TOR1A torsin family 1 member A 2 2
MIRT724174 ABCF2 ATP binding cassette subfamily F member 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3120-5p Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-3120-5p Prednisone/Azathioprine/Methotrexate/Cyclophosphamide/Mycophenolate mofetil sensitive tissue (myasthenia gravis)
hsa-miR-3120-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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