miRTarBase - #MIRT607430


—
pre-miRNA Information
pre-miRNA hsa-mir-4793   
Genomic Coordinates chr3: 48644194 - 48644280
Description Homo sapiens miR-4793 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4793-3p
Sequence 58| UCUGCACUGUGAGUUGGCUGGCU |80
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5899925 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs779602935 6 dbSNP
rs757908486 7 dbSNP
rs1422853760 15 dbSNP
rs377721296 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol NOTCH2NL   
Synonyms N2N
Description notch 2 N-terminal like
Transcript NM_203458   
Expression
Putative miRNA Targets on NOTCH2NL
3'UTR of NOTCH2NL
(miRNA target sites are highlighted)		 
>NOTCH2NL|NM_203458|3'UTR
   1 ACACTGGAAAATATGTATGTGTGGTTAATAAAGTGCTTTAAACTGAATTGACATTAACAGTGGGTGATCAACTTTACTAT
  81 GTGCTTGTGCTTTTGCTTTTGATGGAGTAATTCATTGTTTTCTTATCCACCTAAATGCACCCAGCTGCCCTTGATTTTCT
 161 CTGGGCTACTGGCCTTCACAACCCTCTCCCATGTACCCTCTCTGACTTTGGGGTAACCCTCCCCTAACTTAAAGCTAGAG
 241 AATTCTGAAACTGAGGAGGGGATCCTCTGTTAATCAGTGAGCACTTTTTGATGAGCTGATAGATGATATATGAGAGACTA
 321 TGCGTGGCACAATACTTTGTTACACTCTTCACTGATACAAGTGTTCTAGAGTGTACACACAACCCAAAGATAGAAATAAA
 401 AAGAGGAGCAGTGTCGGGGAGCTTGGGGCCTGGTGTTCCATGGAGAGGGAGAAAGGAACAAGCTTGACCAATTCATTCAA
 481 CTCCTTATAAAAATGATGAGGAGGCTGAAAACCAAGAATTTTGATTGGGAACAGAATACAAGCAGCTGAATCAGATGAAT
 561 TACTAAGCAACAAAGATCCTGTTTTTATACAAATATCCTTAGTACAAAAACAAAAGAAGGAAAACTGTAGGGGGGAGTAA
 641 TGTGCTAAGTAAGCAGAATTGCCTCAAAAAGAAGTTGTTCTAGTTACTCTTTCAGAGTGGGAATCTTAGATTCTGGTATT
 721 GTGGATATGGTTCACATATAATGGGATTGTGTGTTTTATTTTGGAGGGATTAAAGGTCATAGTTTGGTCCTCAGTATAAA
 801 ATCAACTGGTAATTTATTCATTTCATTTGGTAAAAATGTATTGACTGCCTGCTATGTTCTAGGCACCATGCTATGTATTT
 881 GGAATACAGCTATACAAAGCATTGTCACATAATTGAAATGAAAATTTTATATTATTTAAGTCACAAGAACAAGCTATTTA
 961 ATTATATTACTTTTAGTTTCTCTTTTAATAAAGAATAGATAATGCTATCATTCTAGATACTAAATAAGTATTTTCTTAAC
1041 ATAATATTACTATCCACTTTATCTTGTAGAAGAAATAACTAAAATACATCTGTCTTCACTCCTGTATTTGTTTGCATTTT
1121 AAGGATTAAAGACAGAAATAGAAATGTAAACAACTTTATTTTGAAAATATTTCAACACTGCAAATATCTCTGGGTCTGAT
1201 ATTCTAGTAATCTAATTGGCTAGTAATTGATGTTAGTGTGATTTATTGTTGAAGGCTAAATGTGTTTTTCAGTTTCAAGA
1281 AAATTGCTTTTAATAATTGCCTAGAACAAGAGGTTGATTTGGCAGCAAGATGTTGACGGGAAGTTAGAGAAGTCAATAAA
1361 GGAAGTTTTTAGCTGAGAGAGAGTGATTATTCACTCCCATAGCCTCTGCATTGTTATCCATTAGCCACGATAAGAACCTT
1441 AGGGAATTCTGAGAGTGTGTCCAGGAAAGGATCTGTCAAACTAGAATAGTATCTCCTCCTTGAGAAAGGAAATAACCAAG
1521 GATTCCGCAGCTGAGAGGCTGCCAGGGCTAGTGAAATAGAGTAAGGAAATCTTGGCTGTCTCTTATTCTCTGGTTGTAGT
1601 TTAACGCAAGACACTTATTTACTCACTGATGGTGTGTGTGTGTGTGGGAGGGGAGATTAGCATGAGGGGTGGGAATGGGG
1681 AGATTCGATGAAGAGAAAACTAACATTTTTTTGGTGACTCAGGAACTGTGCCAGGTACTTCCATGCTTATTAGCTCAATT
1761 ACACAAAAATCTTGGGACCAGGTATTATTTTTCAAGTCTTCCCACATGAAGTAACTGAAGTTTGGAGATGTTAAGTGATT
1841 CACCCAAAGTTGTACAGCTAATATGTGGTTAGGCTGGGTCCTGAAACCGAGGCAGTTTATTTTCAAAGCCTTTGCTTTGT
1921 GCATCTTACTGCGCCACATTGCACTGCACATCTGCTTCCTGAAAGCACTTTGTAGGTGTGTAAAACTTTTCGTTAAATGC
2001 TTTAAGCTGTTTGGGTTAAAAATATATGTTCATGTTATAAGAAAACCAAGACACTCCTAATTATAATCAAATAGTACTTG
2081 TTACATATCAATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGGCGTTGTGCAG
2161 ATGTTTAAAAGTAGTTACATAGACTAGTTCTTGCTTTTCAGGGTCCCATAATCTAAACCAGATGACTTCAGCTTTGGATA
2241 AATATATAGAAGGAAATTTAAAGAGAATTCAAAACAATAGATGATGCAGTGACACTGTGAATAAATGTTATTTATACAGT
2321 TTGTAAGATTTCATGCTCATTGTTCATATGTCCCAGGTGGAGTTCAGAAAATATTCTCTTCATTTCCACAAAGGGGAATA
2401 GTGCCTGGAGATGGTTTTCTTTTAAAAAGTCCTTTTCATAATGCAGTGCCCTTCCTTCCATTGCCCTTCATTCCATTGCT
2481 TCCCATGCTTGTCAAGAGACTAAAATGTTACTTATAGTAATAGTCACTATCTCAATGTAAATAGCACCCTTATTTGATGA
2561 GAATTATTATTTCAGTTCTAAAAATGGGGAAACAAAGTCAGCAGGAGGCAAAGTAGCTTGTTAAAGTATTCTGCAACTTT
2641 CAAATGGTTGCTTCCACTGCATTTCACGTCTTGGCACTTCTAATTGAGGGTTACTCTAACCACCCTATTTAAAATTGTAA
2721 CTGTCCCCCACCCCCTTAATTACTAACCCTGGTCTACTTTTTGTTTTCTTTTTCTGTAACTCTTATCTTCTTACTATATA
2801 ATTTATACTATATAATTTACTTCATTATGTCTATTGTTCATTGTCTGTCTTTTCCAAATTCTACTGCCTCTTACCCTCTC
2881 CAGAATGAAAACTAGTATCTTTGTTTTTGTTTACTGATGTAACCCAAACACCTACAAACAGTGCCCAGTATATACTAGGC
2961 CCACAAATATATATTGGCTGACTGACTGTATGGTTTAGTATCATGTCATAGTATTGAGACTGTAACTTTGGTCTTCTCAT
3041 TTTCTTCTTTGTATTGTGCGTCCTAGACTTAGTTTGGCCTCTCCTTTTGTCCTTGTATACTCTAATACTGGATAAGAATT
3121 TTGGAGTCTTTTTCAACTCTGAGTCAGTGAATGCCACATAACTTAGTGACTATATTTAAATGGTTAATTTACAATTTTTT
3201 CCCTGCAAAGGATACTGTAGTCACTGTGAGTATTTTAGTATTATTGTAGGACTCAAGAGGGAATTAAAACTACAAAAATG
3281 ACTCCTCTTGTATGACACAGAAAGAAATGTTTCTTCACAGAGGGAGGAGAAAAATATCTTCAAGAGAGAACTAATAGAAT
3361 CAAATCAATGAACCATGTCTCATCTTTTTGGATAAGTAACTGTTAGTAATCCAGACACTTCATGAGCTTTCATTATGTAA
3441 AGTCTTTAGCAGAAGCTAAAGGAGGGGCACCAACCACAGTAATTTTAACTTAAGAACAAAATGGAGCATGAAAATAAATT
3521 ATTAAATCATTTACTCCCACTATTTTTGGGTTAGGGCCAATAATGGGGAGAGAAAGAGGTAGACTAGTTTTGTGTTTGTG
3601 GCTATTTTAATAGAGTAGCACAAGTAATCAAAAAACAGTAGGCTGTTTTGAATTTACTGGCTGTCCCTTATGAGTTCACA
3681 GTTAGATTGGACTGTCCTCAATGTACTTTCTTTTTTTTCTTTCTTTCCCACATCTCTTTATTTCTCTGATTTTGTTTAAA
3761 CTTCATAAAGAGCTCTCTGATCTTTCCTTTCCAAACAATGAAGGTTTATCCTTTGTAAACTACCTCTGTACTCCACAGGC
3841 TGATGATATGTGATATCCCTATATCATTAAAGTAAAGCCTAAGCACATTCTATGGCTTTTGTGTCTACTCTGTTGTTGCT
3921 GAGCTTATGAACTATTAGAAATAACTCCCTCTTGCATTTTCACACATGGGGAATGTGATGTTCTCTTGGGTATTATGCTA
4001 ATCATATTTTGGCAGGTTTCTCTGGAGCAGATGCAGAAATGATCATACCACTTTCCAGGGTGTATTATTTTAGCTCCTTT
4081 GACTTGGGCCCTAAGTCTGTTTTACCTGATGTTCCTGAAAGATGTTCCTGATGTCCTTCACTGTTCTTTCATGCTGGATG
4161 TTCTTGCCTATGCTGCCTCCTCAGCTATCACCCTCTCTTCCCCTTTTTAATGTAGAACTCATTCTTAATGATTTGTCAAA
4241 GGCAC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ucggUC-GGUUGAGUGUCACGUCu 5'
              || ||  :|||:| ||||| 
Target 5' aaaaAGTCCTTTTCATAATGCAGt 3'
 2424 - 2447 131.00 -15.60
2 
miRNA  3' ucgGUCGGUUGAGUGUCACGucu 5'
             || || ||  |||||||   
Target 5' aaaCA-CCTACAAACAGTGCcca 3'
 2926 - 2947 123.00 -13.32
3 
miRNA  3' ucgGUCGGUUGAG----UGUC-ACGUCu 5'
             ||| :  |||    :||| ||||| 
Target 5' tggCAGGTTTCTCTGGAGCAGATGCAGa 3'
 4010 - 4037 122.00 -18.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30492574 15 COSMIC
COSN30113029 40 COSMIC
COSN30159273 50 COSMIC
COSN17153273 62 COSMIC
COSN30162982 76 COSMIC
COSN31501843 77 COSMIC
COSN30496809 78 COSMIC
COSN30134177 83 COSMIC
COSN30519320 84 COSMIC
COSN30189974 93 COSMIC
COSN30137611 127 COSMIC
COSN30185271 132 COSMIC
COSN30155481 142 COSMIC
COSN31555496 147 COSMIC
COSN30162747 161 COSMIC
COSN30126505 163 COSMIC
COSN20095296 281 COSMIC
COSN20095297 284 COSMIC
COSN20090322 289 COSMIC
COSN28668062 323 COSMIC
COSN31589645 324 COSMIC
COSN17967920 374 COSMIC
COSN31483845 442 COSMIC
COSN16549242 447 COSMIC
COSN31489319 466 COSMIC
COSN31556480 484 COSMIC
COSN16762300 512 COSMIC
COSN30539364 575 COSMIC
COSN31527433 575 COSMIC
COSN31550887 627 COSMIC
COSN16244154 787 COSMIC
COSN23987610 873 COSMIC
COSN8319254 946 COSMIC
COSN30127438 1125 COSMIC
COSN8890955 1192 COSMIC
COSN14529750 1198 COSMIC
COSN20090323 1410 COSMIC
COSN21264191 1472 COSMIC
COSN20090324 1499 COSMIC
COSN32123474 1582 COSMIC
COSN24717042 1680 COSMIC
COSN29491298 1992 COSMIC
COSN20090325 2063 COSMIC
COSN20095298 2094 COSMIC
COSN20095299 2139 COSMIC
COSN27922573 2139 COSMIC
COSN20090326 2147 COSMIC
COSN8319255 2150 COSMIC
COSN29130805 2592 COSMIC
COSN23906092 3077 COSMIC
COSN29511198 3414 COSMIC
COSN23899492 3501 COSMIC
COSN20095300 3710 COSMIC
COSN20090327 3729 COSMIC
COSN9362651 3801 COSMIC
COSN28382145 3809 COSMIC
COSN19754456 3892 COSMIC
COSN20283246 3992 COSMIC
COSN17912655 4137 COSMIC
COSN1088668 4150 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs782384790 1 dbSNP
rs1053720 3 dbSNP
rs782089639 7 dbSNP
rs782704634 8 dbSNP
rs781931562 12 dbSNP
rs782149998 15 dbSNP
rs782809692 17 dbSNP
rs781860190 28 dbSNP
rs782725249 30 dbSNP
rs781842076 33 dbSNP
rs782437207 36 dbSNP
rs782597794 40 dbSNP
rs781894580 41 dbSNP
rs782561056 42 dbSNP
rs782644588 43 dbSNP
rs587677948 58 dbSNP
rs976689 62 dbSNP
rs587749975 73 dbSNP
rs587645872 78 dbSNP
rs587702947 83 dbSNP
rs148490712 87 dbSNP
rs1302421164 108 dbSNP
rs1311937517 125 dbSNP
rs1208315244 130 dbSNP
rs587758490 158 dbSNP
rs370144099 181 dbSNP
rs1262695004 198 dbSNP
rs1488681887 207 dbSNP
rs373856645 218 dbSNP
rs1215982040 232 dbSNP
rs868936438 241 dbSNP
rs1261015564 260 dbSNP
rs1481386038 268 dbSNP
rs1191632762 275 dbSNP
rs1424240758 281 dbSNP
rs1431182446 282 dbSNP
rs1160899048 290 dbSNP
rs1360728515 298 dbSNP
rs1418631890 305 dbSNP
rs1295793785 312 dbSNP
rs1366828292 317 dbSNP
rs1439261665 320 dbSNP
rs587637753 339 dbSNP
rs1294584385 345 dbSNP
rs1367409801 347 dbSNP
rs1217806745 361 dbSNP
rs2596058 374 dbSNP
rs1354669550 389 dbSNP
rs1239624403 391 dbSNP
rs1283981923 395 dbSNP
rs1453358832 397 dbSNP
rs1222245874 398 dbSNP
rs1246032757 411 dbSNP
rs1487406119 415 dbSNP
rs1178721872 416 dbSNP
rs1380588554 417 dbSNP
rs1438706997 432 dbSNP
rs1156418537 449 dbSNP
rs1386582606 455 dbSNP
rs1405423877 462 dbSNP
rs2691743 467 dbSNP
rs1349809285 469 dbSNP
rs1434839248 470 dbSNP
rs1333810375 480 dbSNP
rs1378027604 482 dbSNP
rs587691333 488 dbSNP
rs587751361 512 dbSNP
rs782102570 522 dbSNP
rs782693968 538 dbSNP
rs1289143639 545 dbSNP
rs1062341 551 dbSNP
rs587643315 553 dbSNP
rs1238564837 557 dbSNP
rs711761 569 dbSNP
rs1457116942 575 dbSNP
rs1176448808 581 dbSNP
rs587700337 596 dbSNP
rs1180762262 601 dbSNP
rs1410921386 611 dbSNP
rs1404104029 614 dbSNP
rs1173411277 617 dbSNP
rs1401506548 619 dbSNP
rs1465410062 629 dbSNP
rs587757938 630 dbSNP
rs868933288 631 dbSNP
rs3895177 632 dbSNP
rs1448922307 635 dbSNP
rs1283687677 636 dbSNP
rs1376981303 636 dbSNP
rs1220419418 639 dbSNP
rs1258610248 656 dbSNP
rs587653167 659 dbSNP
rs2691742 666 dbSNP
rs1196523819 667 dbSNP
rs1280375949 675 dbSNP
rs1442658848 680 dbSNP
rs1186323703 689 dbSNP
rs1235278432 704 dbSNP
rs1478487358 710 dbSNP
rs1196528377 733 dbSNP
rs1477735095 736 dbSNP
rs1168964887 745 dbSNP
rs1404728994 746 dbSNP
rs1415259520 752 dbSNP
rs587712074 753 dbSNP
rs587612671 766 dbSNP
rs2922748 768 dbSNP
rs1278842891 770 dbSNP
rs3895175 787 dbSNP
rs1339741593 794 dbSNP
rs868987471 808 dbSNP
rs587646438 816 dbSNP
rs1216665233 823 dbSNP
rs1276405058 832 dbSNP
rs1345408254 838 dbSNP
rs1199548875 854 dbSNP
rs1276038935 857 dbSNP
rs28713400 873 dbSNP
rs1216695832 875 dbSNP
rs1264604052 885 dbSNP
rs11580537 891 dbSNP
rs1488257127 914 dbSNP
rs1191578792 920 dbSNP
rs1379761670 921 dbSNP
rs1478549166 924 dbSNP
rs1172254952 926 dbSNP
rs1393496514 929 dbSNP
rs1421660528 938 dbSNP
rs1298903294 939 dbSNP
rs781873488 941 dbSNP
rs1359911101 942 dbSNP
rs1398108347 945 dbSNP
rs1325392012 957 dbSNP
rs587718120 969 dbSNP
rs1331516351 977 dbSNP
rs1232214593 980 dbSNP
rs3872105 993 dbSNP
rs2493405 1030 dbSNP
rs1272781725 1031 dbSNP
rs61814561 1075 dbSNP
rs587602531 1120 dbSNP
rs587663993 1123 dbSNP
rs2096092 1125 dbSNP
rs1240348448 1133 dbSNP
rs587750036 1136 dbSNP
rs1284691433 1161 dbSNP
rs1486998464 1196 dbSNP
rs1203918519 1208 dbSNP
rs1270059059 1216 dbSNP
rs868940040 1224 dbSNP
rs1198582791 1249 dbSNP
rs56367250 1271 dbSNP
rs1251462711 1292 dbSNP
rs1441786767 1337 dbSNP
rs587621438 1338 dbSNP
rs1379792132 1356 dbSNP
rs1451698430 1372 dbSNP
rs868915694 1373 dbSNP
rs868972659 1377 dbSNP
rs1391355992 1404 dbSNP
rs1386059566 1409 dbSNP
rs587680373 1410 dbSNP
rs1321353314 1428 dbSNP
rs1378751203 1453 dbSNP
rs1447099892 1462 dbSNP
rs1308013794 1473 dbSNP
rs1350918791 1478 dbSNP
rs1246349388 1489 dbSNP
rs1267815485 1491 dbSNP
rs1357690623 1499 dbSNP
rs587764201 1525 dbSNP
rs139255735 1526 dbSNP
rs1271701520 1527 dbSNP
rs1459334344 1537 dbSNP
rs1179553296 1557 dbSNP
rs1237763845 1569 dbSNP
rs1417472175 1574 dbSNP
rs1189686101 1575 dbSNP
rs1369071165 1578 dbSNP
rs1457348766 1580 dbSNP
rs1162651543 1588 dbSNP
rs1402220269 1592 dbSNP
rs1465925172 1595 dbSNP
rs1330342156 1599 dbSNP
rs587611727 1605 dbSNP
rs1339331471 1606 dbSNP
rs1244734197 1618 dbSNP
rs1271802271 1622 dbSNP
rs1320500370 1625 dbSNP
rs1199655115 1626 dbSNP
rs1479785598 1629 dbSNP
rs1202322252 1635 dbSNP
rs1256988356 1636 dbSNP
rs868948097 1638 dbSNP
rs1423267619 1640 dbSNP
rs1425685914 1642 dbSNP
rs1478060113 1645 dbSNP
rs1169713184 1647 dbSNP
rs1352479005 1650 dbSNP
rs1467291756 1652 dbSNP
rs1303021406 1659 dbSNP
rs1412353104 1660 dbSNP
rs4649854 1668 dbSNP
rs1219717632 1671 dbSNP
rs1295308588 1674 dbSNP
rs1306086840 1678 dbSNP
rs2725892 1686 dbSNP
rs4649855 1687 dbSNP
rs1256785307 1691 dbSNP
rs1482989470 1698 dbSNP
rs4649856 1702 dbSNP
rs1265357923 1707 dbSNP
rs1488579552 1710 dbSNP
rs1192803009 1713 dbSNP
rs587724240 1718 dbSNP
rs1176390895 1723 dbSNP
rs1376715573 1726 dbSNP
rs1432389720 1728 dbSNP
rs1299510567 1731 dbSNP
rs1360527831 1733 dbSNP
rs587619901 1743 dbSNP
rs1288747439 1747 dbSNP
rs1360374095 1758 dbSNP
rs1221262482 1776 dbSNP
rs1302315323 1779 dbSNP
rs1347448599 1782 dbSNP
rs1232280771 1784 dbSNP
rs1288290802 1784 dbSNP
rs1354447467 1798 dbSNP
rs1215872966 1806 dbSNP
rs1240255572 1819 dbSNP
rs1489381056 1827 dbSNP
rs1191539608 1832 dbSNP
rs1452187450 1833 dbSNP
rs1160038606 1842 dbSNP
rs1380400530 1844 dbSNP
rs1418536701 1846 dbSNP
rs1159065300 1863 dbSNP
rs1343943602 1888 dbSNP
rs1439154608 1889 dbSNP
rs587701842 1892 dbSNP
rs1370665816 1907 dbSNP
rs1439013277 1908 dbSNP
rs1311716041 1910 dbSNP
rs1377800969 1912 dbSNP
rs1223291801 1921 dbSNP
rs587755977 1923 dbSNP
rs1323442381 1927 dbSNP
rs1222123392 1929 dbSNP
rs1272349137 1932 dbSNP
rs587630699 1933 dbSNP
rs1180175868 1938 dbSNP
rs1238372915 1944 dbSNP
rs1438610346 1948 dbSNP
rs200732919 1949 dbSNP
rs1407608364 1954 dbSNP
rs797036196 1955 dbSNP
rs868943550 1959 dbSNP
rs1460175276 1965 dbSNP
rs1333702658 1982 dbSNP
rs1401291444 1986 dbSNP
rs1441668073 1991 dbSNP
rs1381373839 1992 dbSNP
rs1228838874 2003 dbSNP
rs1332463533 2009 dbSNP
rs1200301873 2022 dbSNP
rs1258369138 2024 dbSNP
rs376716880 2026 dbSNP
rs1201957920 2031 dbSNP
rs587691845 2032 dbSNP
rs1238726844 2034 dbSNP
rs1472828760 2037 dbSNP
rs1189324052 2051 dbSNP
rs587770320 2063 dbSNP
rs1474466567 2067 dbSNP
rs1173295493 2071 dbSNP
rs587639048 2080 dbSNP
rs1409637862 2083 dbSNP
rs1327040696 2085 dbSNP
rs587716837 2087 dbSNP
rs1361014406 2090 dbSNP
rs1448808365 2092 dbSNP
rs4649857 2093 dbSNP
rs1353469266 2094 dbSNP
rs1220325536 2095 dbSNP
rs1278642000 2095 dbSNP
rs1338453978 2095 dbSNP
rs1212494631 2096 dbSNP
rs1280263754 2097 dbSNP
rs1442563642 2097 dbSNP
rs1209516832 2098 dbSNP
rs1254702853 2099 dbSNP
rs1484977698 2101 dbSNP
rs373102991 2101 dbSNP
rs1196414831 2102 dbSNP
rs797035663 2103 dbSNP
rs797025014 2105 dbSNP
rs1374013084 2109 dbSNP
rs1475276706 2109 dbSNP
rs1166410802 2117 dbSNP
rs1427518870 2125 dbSNP
rs1415169202 2127 dbSNP
rs1173104449 2129 dbSNP
rs1373668839 2134 dbSNP
rs1401793266 2135 dbSNP
rs1298711406 2136 dbSNP
rs1325682367 2136 dbSNP
rs61814565 2139 dbSNP
rs1276311644 2141 dbSNP
rs1345301689 2142 dbSNP
rs1233029947 2143 dbSNP
rs1277609817 2144 dbSNP
rs1355159695 2145 dbSNP
rs1191343439 2147 dbSNP
rs1191467302 2147 dbSNP
rs1219492662 2147 dbSNP
rs1263002072 2147 dbSNP
rs1270719679 2147 dbSNP
rs1331429274 2147 dbSNP
rs1439730793 2147 dbSNP
rs1442675933 2147 dbSNP
rs1446851666 2147 dbSNP
rs376685172 2147 dbSNP
rs557877317 2147 dbSNP
rs878912395 2147 dbSNP
rs1240234634 2149 dbSNP
rs1300773838 2149 dbSNP
rs1203834085 2150 dbSNP
rs1261883870 2150 dbSNP
rs1292497363 2150 dbSNP
rs1350605595 2150 dbSNP
rs1441690877 2150 dbSNP
rs61814566 2150 dbSNP
rs1182641322 2151 dbSNP
rs1363235426 2151 dbSNP
rs1772525 2152 dbSNP
rs1395004036 2165 dbSNP
rs1460697136 2176 dbSNP
rs1323556080 2178 dbSNP
rs1402004412 2179 dbSNP
rs1446988824 2183 dbSNP
rs1305680322 2208 dbSNP
rs370018502 2221 dbSNP
rs1333436175 2224 dbSNP
rs1237588356 2229 dbSNP
rs587746590 2239 dbSNP
rs1336007684 2246 dbSNP
rs1213448228 2254 dbSNP
rs1271600058 2258 dbSNP
rs1459265341 2259 dbSNP
rs1196569348 2265 dbSNP
rs1249932657 2278 dbSNP
rs1417373421 2287 dbSNP
rs1189583039 2296 dbSNP
rs1418476569 2307 dbSNP
rs1474790293 2317 dbSNP
rs1162542271 2329 dbSNP
rs1425419083 2342 dbSNP
rs1462206834 2343 dbSNP
rs1297229976 2344 dbSNP
rs1738658 2346 dbSNP
rs1397267038 2356 dbSNP
rs1315433301 2361 dbSNP
rs1356676645 2365 dbSNP
rs79966047 2367 dbSNP
rs1233141856 2368 dbSNP
rs1738657 2377 dbSNP
rs587648194 2386 dbSNP
rs1320395422 2387 dbSNP
rs1228487151 2390 dbSNP
rs1772526 2396 dbSNP
rs587725637 2399 dbSNP
rs1250936855 2401 dbSNP
rs1772527 2407 dbSNP
rs1202233693 2409 dbSNP
rs1258242809 2410 dbSNP
rs1485306071 2411 dbSNP
rs1185659217 2413 dbSNP
rs587625595 2417 dbSNP
rs371136260 2424 dbSNP
rs1169390590 2432 dbSNP
rs1467212594 2438 dbSNP
rs1173725686 2443 dbSNP
rs1374284012 2444 dbSNP
rs1414740402 2457 dbSNP
rs1311565588 2462 dbSNP
rs1364567961 2473 dbSNP
rs1383119795 2475 dbSNP
rs1295195557 2479 dbSNP
rs1305996062 2483 dbSNP
rs1236686728 2489 dbSNP
rs1281167334 2523 dbSNP
rs1347181146 2528 dbSNP
rs1208688813 2536 dbSNP
rs587684535 2544 dbSNP
rs1486105868 2548 dbSNP
rs587739777 2549 dbSNP
rs1259324106 2550 dbSNP
rs1434580185 2554 dbSNP
rs1193830640 2555 dbSNP
rs1394008644 2557 dbSNP
rs376163614 2566 dbSNP
rs376653648 2569 dbSNP
rs1172387507 2570 dbSNP
rs1347447452 2572 dbSNP
rs1454707355 2575 dbSNP
rs1288657957 2592 dbSNP
rs1360261307 2601 dbSNP
rs1443408970 2602 dbSNP
rs1304413202 2620 dbSNP
rs1370431218 2620 dbSNP
rs1232165375 2644 dbSNP
rs1286363305 2654 dbSNP
rs1317453840 2660 dbSNP
rs587659630 2667 dbSNP
rs1258768445 2668 dbSNP
rs1489330099 2672 dbSNP
rs1213970009 2673 dbSNP
rs1251980750 2686 dbSNP
rs1452089570 2689 dbSNP
rs1179983629 2690 dbSNP
rs587745644 2700 dbSNP
rs1407988529 2710 dbSNP
rs587613006 2717 dbSNP
rs1420236564 2730 dbSNP
rs1158953606 2732 dbSNP
rs587677488 2733 dbSNP
rs1343852519 2734 dbSNP
rs587738650 2737 dbSNP
rs1463341593 2742 dbSNP
rs1326901402 2743 dbSNP
rs1394047162 2748 dbSNP
rs587636515 2754 dbSNP
rs1438898040 2761 dbSNP
rs1281383286 2766 dbSNP
rs1374083582 2769 dbSNP
rs1223192902 2780 dbSNP
rs1304739242 2786 dbSNP
rs1336767528 2790 dbSNP
rs1214083370 2791 dbSNP
rs1272252882 2792 dbSNP
rs587689945 2796 dbSNP
rs587764907 2800 dbSNP
rs1232976074 2805 dbSNP
rs1480013420 2809 dbSNP
rs1177177890 2830 dbSNP
rs587613883 2846 dbSNP
rs12120624 2858 dbSNP
rs1476439623 2859 dbSNP
rs1166107073 2863 dbSNP
rs1417539934 2866 dbSNP
rs1460090677 2876 dbSNP
rs1331104012 2878 dbSNP
rs1355225594 2880 dbSNP
rs587689228 2897 dbSNP
rs1296444040 2903 dbSNP
rs1357306593 2917 dbSNP
rs1233755550 2919 dbSNP
rs1292485471 2927 dbSNP
rs1332348384 2936 dbSNP
rs1216012537 2944 dbSNP
rs1273231228 2945 dbSNP
rs1306473356 2950 dbSNP
rs1201840494 2960 dbSNP
rs201868310 2963 dbSNP
rs1189205323 2966 dbSNP
rs587749448 2970 dbSNP
rs1257316207 2976 dbSNP
rs868970928 2981 dbSNP
rs1169930847 2987 dbSNP
rs1420481795 2990 dbSNP
rs587668800 2992 dbSNP
rs1409549988 2998 dbSNP
rs1168434736 3003 dbSNP
rs1377315679 3009 dbSNP
rs1415349954 3023 dbSNP
rs1312177214 3030 dbSNP
rs587729510 3031 dbSNP
rs587774785 3039 dbSNP
rs1270496117 3056 dbSNP
rs587658298 3059 dbSNP
rs1281869920 3060 dbSNP
rs112977216 3063 dbSNP
rs1212272788 3078 dbSNP
rs1280233785 3079 dbSNP
rs1441109054 3083 dbSNP
rs1195803308 3090 dbSNP
rs1242994160 3097 dbSNP
rs1475228234 3114 dbSNP
rs1186858559 3121 dbSNP
rs1397022692 3123 dbSNP
rs1435384746 3130 dbSNP
rs1173006197 3138 dbSNP
rs1373573312 3145 dbSNP
rs1402306104 3156 dbSNP
rs1318760408 3172 dbSNP
rs1325585526 3175 dbSNP
rs587605420 3181 dbSNP
rs1305130577 3184 dbSNP
rs1371173615 3192 dbSNP
rs1232905197 3194 dbSNP
rs1300558707 3201 dbSNP
rs1343503800 3207 dbSNP
rs1207372706 3211 dbSNP
rs1285424110 3218 dbSNP
rs1446765046 3223 dbSNP
rs1207105046 3227 dbSNP
rs587666811 3229 dbSNP
rs1454808902 3232 dbSNP
rs1193092006 3233 dbSNP
rs1375958166 3242 dbSNP
rs1471131753 3244 dbSNP
rs1159051693 3245 dbSNP
rs1384021805 3248 dbSNP
rs587715865 3254 dbSNP
rs1327567010 3257 dbSNP
rs1394785107 3259 dbSNP
rs1439624739 3273 dbSNP
rs1323349913 3274 dbSNP
rs1336968428 3275 dbSNP
rs1241873015 3283 dbSNP
rs587600798 3284 dbSNP
rs1738656 3285 dbSNP
rs1350493933 3290 dbSNP
rs1226929697 3304 dbSNP
rs1275367411 3327 dbSNP
rs1213246041 3328 dbSNP
rs1265416319 3334 dbSNP
rs1439598884 3338 dbSNP
rs587681437 3341 dbSNP
rs1363140986 3343 dbSNP
rs1471534068 3345 dbSNP
rs1166839757 3347 dbSNP
rs1460619150 3351 dbSNP
rs1291411399 3368 dbSNP
rs1398062006 3370 dbSNP
rs1391461212 3374 dbSNP
rs1330215615 3375 dbSNP
rs1335701029 3383 dbSNP
rs1295523694 3398 dbSNP
rs1408496767 3398 dbSNP
rs1335879041 3427 dbSNP
rs1232939827 3436 dbSNP
rs1263893774 3439 dbSNP
rs1341628330 3442 dbSNP
rs1196465300 3447 dbSNP
rs1249819476 3456 dbSNP
rs1482053528 3465 dbSNP
rs1189923066 3471 dbSNP
rs1258026777 3478 dbSNP
rs1474741134 3487 dbSNP
rs1162344352 3491 dbSNP
rs1374421531 3494 dbSNP
rs1462128536 3497 dbSNP
rs1166840398 3501 dbSNP
rs1368107640 3502 dbSNP
rs1428435799 3503 dbSNP
rs1315316108 3508 dbSNP
rs1356575320 3509 dbSNP
rs587738794 3527 dbSNP
rs1310948961 3528 dbSNP
rs1328427426 3538 dbSNP
rs1228381341 3550 dbSNP
rs112832049 3560 dbSNP
rs1250856667 3565 dbSNP
rs1340114352 3565 dbSNP
rs1212990360 3571 dbSNP
rs1280950670 3573 dbSNP
rs1485256834 3575 dbSNP
rs587634542 3582 dbSNP
rs1179914873 3595 dbSNP
rs868969323 3598 dbSNP
rs1428769439 3618 dbSNP
rs1191997967 3624 dbSNP
rs1387824542 3627 dbSNP
rs587661066 3628 dbSNP
rs1176138706 3640 dbSNP
rs1376603548 3642 dbSNP
rs1465917318 3661 dbSNP
rs1301487863 3684 dbSNP
rs1387540005 3691 dbSNP
rs368687489 3711 dbSNP
rs1339947080 3719 dbSNP
rs1363201689 3719 dbSNP
rs1383040185 3719 dbSNP
rs868977990 3729 dbSNP
rs1304181358 3736 dbSNP
rs1347067616 3757 dbSNP
rs1207871929 3767 dbSNP
rs11578396 3801 dbSNP
rs373589507 3808 dbSNP
rs1204248825 3837 dbSNP
rs1245800998 3838 dbSNP
rs376512922 3842 dbSNP
rs868965597 3844 dbSNP
rs368216925 3901 dbSNP
rs797042201 3932 dbSNP
rs2746762 3945 dbSNP
rs868951806 3990 dbSNP
rs868917128 4049 dbSNP
rs587739493 4098 dbSNP
rs868949368 4121 dbSNP
rs587608523 4132 dbSNP
rs1193714872 4135 dbSNP
rs587692384 4136 dbSNP
rs587726017 4184 dbSNP
rs587649886 4211 dbSNP
rs1393909647 4227 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions BT474
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1395168. RNA binding protein: AGO. Condition:BT474 AGO HITS-CLIP Replicate 3 ...

- Pillai MM; Gillen AE; Yamamoto TM; Kline E; et al., 2014, Breast cancer research and treatment.

Article - Pillai MM; Gillen AE; Yamamoto TM; Kline E; et al.
- Breast cancer research and treatment, 2014
miRNAs regulate the expression of genes in both normal physiology and disease. While miRNAs have been demonstrated to play a pivotal role in aspects of cancer biology, these reports have generally focused on the regulation of single genes. Such single-gene approaches have significant limitations, relying on miRNA expression levels and heuristic predictions of mRNA-binding sites. This results in only circumstantial evidence of miRNA-target interaction and typically leads to large numbers of false positive predictions. Here, we used a genome-wide approach (high-throughput sequencing of RNA isolated by crosslinking immunoprecipitation, HITS-CLIP) to define direct miRNA-mRNA interactions in three breast cancer subtypes (estrogen receptor positive, Her2 amplified, and triple negative). Focusing on steroid receptor signaling, we identified two novel regulators of the ER pathway (miR-9-5p and miR-193a/b-3p), which together target multiple genes involved in ER signaling. Moreover, this approach enabled the definition of miR-9-5p as a global regulator of steroid receptor signaling in breast cancer. We show that miRNA targets and networks defined by HITS-CLIP under physiologic conditions are predictive of patient outcomes and provide global insight into miRNA regulation in breast cancer.
LinkOut: [PMID: 24906430]
CLIP-seq Support 1 for dataset GSM1395168
Method / RBP HITS-CLIP / AGO
Cell line / Condition BT474 / BT474 AGO HITS-CLIP Replicate 3
Location of target site ENST00000369340.3 | 3UTR | UCAAUAUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUAUGGCGUUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 24906430 / GSE57855
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
296 hsa-miR-4793-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092332 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT131237 ATG2A autophagy related 2A 2 2
MIRT145926 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT206559 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT226455 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT337662 ZNF695 zinc finger protein 695 2 2
MIRT405828 SIX4 SIX homeobox 4 2 2
MIRT455113 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT456756 TMEM239 transmembrane protein 239 2 4
MIRT457974 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT458173 LYRM4 LYR motif containing 4 2 4
MIRT458245 SLC9A7 solute carrier family 9 member A7 2 2
MIRT466145 TMEM120B transmembrane protein 120B 2 2
MIRT474981 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT475601 HMGB2 high mobility group box 2 2 4
MIRT480759 BMP3 bone morphogenetic protein 3 2 4
MIRT481156 AVL9 AVL9 cell migration associated 2 2
MIRT482155 AK2 adenylate kinase 2 2 2
MIRT488386 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT496575 KIF18B kinesin family member 18B 2 2
MIRT498411 TXNDC16 thioredoxin domain containing 16 2 4
MIRT504547 ZNF417 zinc finger protein 417 2 6
MIRT505417 TCF7L2 transcription factor 7 like 2 2 2
MIRT509349 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 6
MIRT512164 CD164 CD164 molecule 2 6
MIRT517238 PRIM1 DNA primase subunit 1 2 2
MIRT518671 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT519298 MLH1 mutL homolog 1 2 2
MIRT523662 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT525452 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539847 ZNF766 zinc finger protein 766 2 2
MIRT540076 SSH3 slingshot protein phosphatase 3 2 2
MIRT540320 PIGR polymeric immunoglobulin receptor 2 2
MIRT540548 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT540759 UTP6 UTP6, small subunit processome component 2 2
MIRT541545 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT541553 SLC35E1 solute carrier family 35 member E1 2 2
MIRT541666 ATP8B3 ATPase phospholipid transporting 8B3 2 4
MIRT541722 TFDP2 transcription factor Dp-2 2 2
MIRT541800 DUSP28 dual specificity phosphatase 28 2 2
MIRT541816 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT541907 VWA7 von Willebrand factor A domain containing 7 2 2
MIRT542154 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT542207 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542233 FUT9 fucosyltransferase 9 2 2
MIRT542320 SERPING1 serpin family G member 1 2 2
MIRT542369 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542476 APOC3 apolipoprotein C3 2 2
MIRT542641 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542660 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT542749 PRRG4 proline rich and Gla domain 4 2 4
MIRT542789 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT545442 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT546206 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT552270 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552655 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT554134 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT556795 KIAA1958 KIAA1958 2 2
MIRT564762 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT569428 STX7 syntaxin 7 2 2
MIRT573245 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT607390 LANCL3 LanC like 3 2 2
MIRT607430 NOTCH2NL notch 2 N-terminal like 2 2
MIRT607452 ZNF543 zinc finger protein 543 2 2
MIRT607580 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT607748 ANGPT4 angiopoietin 4 2 2
MIRT607907 SPRYD4 SPRY domain containing 4 2 2
MIRT608703 GMPR guanosine monophosphate reductase 2 2
MIRT612127 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 2 2
MIRT612786 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT616692 LPL lipoprotein lipase 2 2
MIRT617045 ZNF610 zinc finger protein 610 2 2
MIRT617091 ZNF43 zinc finger protein 43 2 2
MIRT617314 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT617355 MELK maternal embryonic leucine zipper kinase 2 2
MIRT617486 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT617579 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT617669 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT617722 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617893 PTCHD3 patched domain containing 3 2 2
MIRT617982 ZNF234 zinc finger protein 234 2 4
MIRT618434 MYLK3 myosin light chain kinase 3 2 4
MIRT618732 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT619045 CASS4 Cas scaffolding protein family member 4 2 2
MIRT619573 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT619671 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT619887 ABHD17B abhydrolase domain containing 17B 2 2
MIRT620519 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT620535 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT620996 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT621304 YIPF4 Yip1 domain family member 4 2 2
MIRT622086 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622168 SMYD1 SET and MYND domain containing 1 2 2
MIRT622543 PXMP4 peroxisomal membrane protein 4 2 2
MIRT622761 PGM3 phosphoglucomutase 3 2 2
MIRT622885 PDCL3 phosducin like 3 2 4
MIRT623130 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 2 2
MIRT624840 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT625047 MBD3 methyl-CpG binding domain protein 3 2 2
MIRT625059 ZNF556 zinc finger protein 556 2 2
MIRT625508 PPAPDC1A phospholipid phosphatase 4 2 2
MIRT625573 ANKRD42 ankyrin repeat domain 42 2 2
MIRT626133 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT626327 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626765 CDC14B cell division cycle 14B 2 2
MIRT626798 CSE1L chromosome segregation 1 like 2 2
MIRT627212 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT627225 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT627256 XKR4 XK related 4 2 2
MIRT628190 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT628466 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT628627 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT629040 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT630847 ACACB acetyl-CoA carboxylase beta 2 2
MIRT631721 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT632264 USP1 ubiquitin specific peptidase 1 2 4
MIRT632571 POLQ DNA polymerase theta 2 2
MIRT633992 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635211 ZNF286A zinc finger protein 286A 2 4
MIRT635249 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635261 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT635283 GK5 glycerol kinase 5 (putative) 2 2
MIRT635663 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT636251 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT636564 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT636814 TBC1D24 TBC1 domain family member 24 2 2
MIRT637358 ZNF460 zinc finger protein 460 2 2
MIRT637473 DEFB105B defensin beta 105B 2 4
MIRT637505 DEFB105A defensin beta 105A 2 4
MIRT637861 SC5D sterol-C5-desaturase 2 2
MIRT638080 ZNF652 zinc finger protein 652 2 2
MIRT638096 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT638174 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT638201 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT638278 SH2B3 SH2B adaptor protein 3 2 2
MIRT638714 FUT11 fucosyltransferase 11 2 2
MIRT638852 CLMP CXADR like membrane protein 2 2
MIRT639815 TMED8 transmembrane p24 trafficking protein family member 8 2 2
MIRT640879 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT640937 FAM129A family with sequence similarity 129 member A 2 2
MIRT640971 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT641642 GNAZ G protein subunit alpha z 2 2
MIRT641931 SLC25A16 solute carrier family 25 member 16 2 2
MIRT642136 CRY2 cryptochrome circadian clock 2 2 2
MIRT643199 JAK3 Janus kinase 3 2 2
MIRT643256 ZNF566 zinc finger protein 566 2 2
MIRT643378 TRIM16L tripartite motif containing 16 like 2 2
MIRT643683 AMER3 APC membrane recruitment protein 3 2 2
MIRT643728 MCMDC2 minichromosome maintenance domain containing 2 2 2
MIRT643949 CCDC141 coiled-coil domain containing 141 2 2
MIRT644915 SERF1B small EDRK-rich factor 1B 2 2
MIRT645163 NOL9 nucleolar protein 9 2 2
MIRT645547 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT645550 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT645572 TACR2 tachykinin receptor 2 2 2
MIRT646697 SERF1A small EDRK-rich factor 1A 2 2
MIRT647806 FRMD8 FERM domain containing 8 2 2
MIRT647903 CIRH1A UTP4, small subunit processome component 2 2
MIRT648978 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT649907 SLFN12L schlafen family member 12 like 2 2
MIRT650224 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT651880 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT651935 UBN1 ubinuclein 1 2 2
MIRT652839 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT652994 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT654800 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655591 OTUD7B OTU deubiquitinase 7B 2 2
MIRT658760 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT659358 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT660717 AMER1 APC membrane recruitment protein 1 2 2
MIRT660737 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT661088 TMEM145 transmembrane protein 145 2 2
MIRT661176 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT662005 ZNF445 zinc finger protein 445 2 2
MIRT662178 KIAA1210 KIAA1210 2 2
MIRT662270 OR51E2 olfactory receptor family 51 subfamily E member 2 2 2
MIRT663046 SLC16A4 solute carrier family 16 member 4 2 2
MIRT663476 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT664039 RPL27A ribosomal protein L27a 2 2
MIRT664096 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT664109 FUT1 fucosyltransferase 1 (H blood group) 2 2
MIRT664317 CD209 CD209 molecule 2 2
MIRT664455 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT664595 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 4
MIRT664694 DBF4 DBF4 zinc finger 2 2
MIRT665162 SF3A1 splicing factor 3a subunit 1 2 2
MIRT665214 RBM22 RNA binding motif protein 22 2 2
MIRT665254 ZNF286B zinc finger protein 286B 2 2
MIRT665268 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT665606 TTC39A tetratricopeptide repeat domain 39A 2 2
MIRT665830 TIMELESS timeless circadian clock 2 2
MIRT666201 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT666546 RNF115 ring finger protein 115 2 2
MIRT666602 REEP3 receptor accessory protein 3 2 2
MIRT666862 POU2F3 POU class 2 homeobox 3 2 4
MIRT666886 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT667158 NRXN3 neurexin 3 2 2
MIRT667252 NEK9 NIMA related kinase 9 2 2
MIRT667419 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT667434 METTL8 methyltransferase like 8 2 2
MIRT668023 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT668062 GPR75 G protein-coupled receptor 75 2 2
MIRT668070 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT668607 EHD4 EH domain containing 4 2 4
MIRT668694 DNAL1 dynein axonemal light chain 1 2 2
MIRT668782 DAAM1 dishevelled associated activator of morphogenesis 1 2 2
MIRT669037 CHEK1 checkpoint kinase 1 2 2
MIRT669044 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT669156 CCNG1 cyclin G1 2 2
MIRT670090 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT670206 SLC24A4 solute carrier family 24 member 4 2 2
MIRT672488 FUS FUS RNA binding protein 2 2
MIRT673830 SLC11A2 solute carrier family 11 member 2 2 2
MIRT675481 VEGFC vascular endothelial growth factor C 2 2
MIRT675634 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT677913 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678420 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678626 OLFML2A olfactomedin like 2A 2 2
MIRT678791 NUPL2 nucleoporin like 2 2 2
MIRT679561 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT680743 CA5B carbonic anhydrase 5B 2 2
MIRT682481 LIX1L limb and CNS expressed 1 like 2 4
MIRT682701 PSMD9 proteasome 26S subunit, non-ATPase 9 2 2
MIRT682759 MDM2 MDM2 proto-oncogene 2 2
MIRT682811 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682847 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT682896 XIAP X-linked inhibitor of apoptosis 2 2
MIRT682916 FAM73A mitoguardin 1 2 2
MIRT682935 ZNF292 zinc finger protein 292 2 2
MIRT682953 RPL12 ribosomal protein L12 2 2
MIRT682972 NF2 neurofibromin 2 2 2
MIRT683033 SUSD5 sushi domain containing 5 2 2
MIRT683081 A1BG alpha-1-B glycoprotein 2 2
MIRT683105 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT686640 TMEM184C transmembrane protein 184C 2 2
MIRT687444 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688401 EMC8 ER membrane protein complex subunit 8 2 2
MIRT688886 C3orf70 chromosome 3 open reading frame 70 2 2
MIRT689148 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 2 2
MIRT689234 RPS19 ribosomal protein S19 2 2
MIRT689306 C5AR2 complement component 5a receptor 2 2 2
MIRT689364 ZNF101 zinc finger protein 101 2 2
MIRT689498 SCARF1 scavenger receptor class F member 1 2 2
MIRT689655 RBM23 RNA binding motif protein 23 2 2
MIRT689897 SOD2 superoxide dismutase 2 2 2
MIRT690150 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT690601 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690805 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT690946 GLG1 golgi glycoprotein 1 2 2
MIRT691388 ATP13A4 ATPase 13A4 2 2
MIRT691408 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT692175 LRRC3C leucine rich repeat containing 3C 2 2
MIRT692235 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693283 GINM1 glycoprotein integral membrane 1 2 2
MIRT693439 TPGS1 tubulin polyglutamylase complex subunit 1 2 2
MIRT693460 HIST1H2AG histone cluster 1 H2A family member g 2 2
MIRT693768 ZNF383 zinc finger protein 383 2 2
MIRT694018 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694236 ZNF749 zinc finger protein 749 2 2
MIRT694321 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694347 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT694430 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT695763 WDR35 WD repeat domain 35 2 2
MIRT696167 TIPIN TIMELESS interacting protein 2 2
MIRT696417 DOCK7 dedicator of cytokinesis 7 2 2
MIRT696543 C3 complement C3 2 2
MIRT696998 CCDC80 coiled-coil domain containing 80 2 2
MIRT697232 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697806 UBXN2A UBX domain protein 2A 2 2
MIRT697944 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT698161 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT698778 STK4 serine/threonine kinase 4 2 2
MIRT700259 RBM12B RNA binding motif protein 12B 2 2
MIRT700970 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT701251 NUP35 nucleoporin 35 2 2
MIRT701607 MYPN myopalladin 2 2
MIRT702457 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702613 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT702691 IRGQ immunity related GTPase Q 2 2
MIRT702934 HMX3 H6 family homeobox 3 2 2
MIRT702991 HERPUD2 HERPUD family member 2 2 2
MIRT703148 GPR137C G protein-coupled receptor 137C 2 2
MIRT703980 EMC1 ER membrane protein complex subunit 1 2 2
MIRT704569 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT705065 C4orf32 family with sequence similarity 241 member A 2 2
MIRT705447 ATL2 atlastin GTPase 2 2 2
MIRT705856 AFF3 AF4/FMR2 family member 3 2 2
MIRT705886 ADIPOR2 adiponectin receptor 2 2 2
MIRT714370 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT715784 PHF12 PHD finger protein 12 2 2
MIRT715864 KIAA0101 PCNA clamp associated factor 2 2
MIRT715947 NUP93 nucleoporin 93 2 2
MIRT716132 THOC5 THO complex 5 2 2
MIRT717084 EBF4 early B-cell factor 4 2 2
MIRT725424 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT736091 GREM1 gremlin 1, DAN family BMP antagonist 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4793 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4793-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4793-3p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4793-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

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