pre-miRNA Information
pre-miRNA hsa-mir-4793   
Genomic Coordinates chr3: 48644194 - 48644280
Description Homo sapiens miR-4793 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4793-3p
Sequence 58| UCUGCACUGUGAGUUGGCUGGCU |80
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5899925 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs779602935 6 dbSNP
rs757908486 7 dbSNP
rs1422853760 15 dbSNP
rs377721296 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TANGO2   
Synonyms C22orf25, MECRCN
Description transport and golgi organization 2 homolog
Transcript NM_152906   
Expression
Putative miRNA Targets on TANGO2
3'UTR of TANGO2
(miRNA target sites are highlighted)
>TANGO2|NM_152906|3'UTR
   1 CCCCACCTCTGGGCCTGGCCAGTGGGCTCCTGGGGGGCCCTGCCTTGAGGGGCACTGTGGACAGGAAACCTTCCTTTGCC
  81 ATACTGCATTGCACTGCCCGTGGCTTGGCCAGCATCCCCCGGATCAGGGCCCTGTGGTTTGCGTGTTACCCATCTGTGTC
 161 CCCATGCCCAGTTCAGGGTCTGCCTTTATGCCAGTGAGGAGCAGCAGAGTCTGATACTAGGTCTAGGACCGGCCGAGGTA
 241 TACCATGAACATGTGGATACACCTGAGCCCACTCTTGCACATGTACACAGGCACTCACATGGCACACACATACACTCCTG
 321 CGTGTGCACAAGCACACACATGCAAGCCATATACATGGACACCGACACAGGCACATGTACGTGCACAGGTGTGCTACACA
 401 TGTGCACACATGCACAGTTGCACAGACACACACACACAGGTGCACACACACGATGCCGAACAAGGCAGAAGGGCGACTCT
 481 CACCTCTCATGTGCTTCTGGCCAGTAGGTCTTTGTTCTGGTCCAACGACAGGAGTAGGCTTGTATTTAAAAGCGGCCCCT
 561 CCTCTCCTGTGGCCACAGAACACAGGCGTGCTTGGACTCTTGACAAGCAGACCTGCTCCTGCAGAGGAGACAGCCACATT
 641 TGGAATTGGGCACCGAGAAGACCTGAGAAAAACCCACTCTCTCTTTTTTTTTTTTTTGAGACGGAGTCTTGCTCTGTCAC
 721 CCAGGCTGGAGTGCAGTGGCACGATCTCGGCTCACTGCAACCTCCGCCTCCCAAGTTCAAGCAATTCTCCTGCCCCAGCC
 801 TCCTGATTAGCTGGGATTACAGGCGTGTGCCACCATGCCCAGCTAATTTTTGTGTTTTTAGTAGAGACGGGGTTTCACCA
 881 TGTTGGTCAGGCTGGTCTTGAACTCCTGACGTGGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTG
 961 AGCCACCACGCCTGGCCGAAAAACCCACTCTCATAACAGAAGTGCAGACTCATTGCTAGATTCAGTGCCCTTGAGTGTGC
1041 CAGAGGTCCTCTGTGTTTGAGACAATCCTGTGTGTGCCAGGAGGCTCCGTGTGCACCAGGGGCTCTCAGAATCCCGCTTA
1121 CCCAGCTGGAGACCATGCCTCTGGCAGCCCCATCTCAGCCAGCCCTGCTCTCTCCCTCTTCCCTCCAGGTGAGGCAAACT
1201 TCATAGGAATCTGTACCTGAATGTGAGCTCCTGATAATAAAACTCTGAGGCTTTGGTGAGCGCATTTCGAGGCCTTTCCC
1281 TTGTATGCAGGGTGCCAGTGGGAGCTGCTATGTCTCCTGTGCAGCCAGACACCCTGGACGAGGCCCTTCCCACCTCCCCC
1361 TTTCCTCACGGCTTCTTCAGCACCACATGTGGATGCCTGTGGGTCAGTCCATCTGTCCATGGGCAGGGGCCGCTGTGAGA
1441 GACCCCATGCGCGTGGGATGTGGTAGATGCTGATTATGGGGCCAGCCACCCATACAGGTCTATCAGGTCGCAATGGAGGC
1521 CCCACTGGAGCGGGAGGCAGGCTGGCCTGGACTTCTGTTGGATGATGGGGGCCAGGGGATGGTAGGAGGGGCAGGAGAGC
1601 AGGTCTGCATCTGTCTCAGCCCCAGGAGCTCCTGGTTTGGGGCCAGCTCTAAGGAGCTTCATCCCTGAGCCTGGCCGAGT
1681 ATAAGGGGGTCCCGGATATCCAATGCTGAGACCTAGACTTTTCTAAGCCTCTGCACCCAACCCCTAACTTGGCCTTTTCA
1761 GACCCATGAGAGTGCAGGGTGGGTGTGGACCTGCGCCAGGGCTTCCCAGCCTGATTGTGACATGATGTGAGTCCACCTAG
1841 GGAGGAGCAGGGGCCTCCCCGTCTCTTCCCCTTCTTGCCCAGACCACTTTGCTGGGCTCAGAGCCTTCCATGGCTCACTT
1921 TGAACTCAGAAGAGTTTCCCAGCTGCGACCCAGGCTGCACCCCCAGGCCTGAGGAGAAACTGAGGCCCCACATCCCATAC
2001 GTGTCCTCTGAGTCAGGACAACAGGCTCCCGGCTGGGGGCACTGCCCTTGCTGCCAACACATTCACCTGCCCCAGTGGCT
2081 ACCATGTCCTGTGCCGGTGACCAGTGCCAGTCCCCAACCTGGATGGTGCCCTGCCCTCATGAAGAGCCCCCCGGATGTTC
2161 ACCTCTGCCCAGAGACCCGGCCTGCCCAGGAAGAGCAGTCTCTGCTCTTGTGTGGGTCCCTCTGCCCCCACCCTGCCCAG
2241 GGCTCCCCAGCAGCCTGAGGCCCCTAAGGAAGAACAGCCCTCAATGGTGATTCTATTGGTGTTATGAGTTGTGTCCCCAA
2321 AGAGATATATCAGTGTCCTGACCCACAGTACCTCAGAATGTGACTGCATTTGGAGATAGGGTTCTTCCAGGGGTAACCAA
2401 GGTAGAATGAGGTCGTTAGTGTGGGCCCTAATCCAATATGACGGCTATCCTTATAAAAAGAGGAACATTTAGGCTGGATA
2481 CAGTGGCTCATGCCTATAATCC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            :|| |||:  :: ||||||| 
Target 5' tgTCACCCAGGCTGGAGTGCAGt 3'
715 - 737 157.00 -19.40
2
miRNA  3' ucGGUC-GGUUGAGUGUCACGUCu 5'
            :||| || | | | ||||||| 
Target 5' ttTCAGACCCA-TGAGAGTGCAGg 3'
1756 - 1778 156.00 -17.60
3
miRNA  3' ucggUCGGUUGAG-----UG---UCACGUCu 5'
              | || ||||     ||   ||||||| 
Target 5' gaaaAACCCACTCTCATAACAGAAGTGCAGa 3'
978 - 1008 151.00 -17.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN29193498 12 COSMIC
COSN28841195 38 COSMIC
COSN30178381 51 COSMIC
COSN30189793 83 COSMIC
COSN6562502 121 COSMIC
COSN29281147 136 COSMIC
COSN18743930 137 COSMIC
COSN31610603 143 COSMIC
COSN28715310 258 COSMIC
COSN28714630 297 COSMIC
COSN28794718 348 COSMIC
COSN23299439 453 COSMIC
COSN8013941 584 COSMIC
COSN8013942 596 COSMIC
COSN29390220 909 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs750008397 2 dbSNP
rs755799964 6 dbSNP
rs1455955117 7 dbSNP
rs201848039 8 dbSNP
rs779369266 10 dbSNP
rs1363321183 15 dbSNP
rs1434983784 21 dbSNP
rs1295938716 24 dbSNP
rs1389571843 25 dbSNP
rs1385428013 30 dbSNP
rs1033944551 32 dbSNP
rs749891667 32 dbSNP
rs767019391 32 dbSNP
rs943422285 37 dbSNP
rs748779459 38 dbSNP
rs754546353 41 dbSNP
rs779360380 42 dbSNP
rs1039104383 44 dbSNP
rs748701728 48 dbSNP
rs772275474 50 dbSNP
rs907815119 56 dbSNP
rs940520089 59 dbSNP
rs1411668504 60 dbSNP
rs1180342891 64 dbSNP
rs1451698137 67 dbSNP
rs1197684734 70 dbSNP
rs973667802 71 dbSNP
rs369685102 81 dbSNP
rs1487849920 86 dbSNP
rs1270906619 91 dbSNP
rs920458253 95 dbSNP
rs1335279529 99 dbSNP
rs1451085483 100 dbSNP
rs932023672 101 dbSNP
rs1337480209 108 dbSNP
rs1329383072 116 dbSNP
rs538409576 117 dbSNP
rs3804045 118 dbSNP
rs183947516 121 dbSNP
rs1052689418 122 dbSNP
rs1391498714 134 dbSNP
rs1386319046 136 dbSNP
rs544274351 143 dbSNP
rs1328476896 144 dbSNP
rs554585789 147 dbSNP
rs1453318402 148 dbSNP
rs1250563181 149 dbSNP
rs1297236923 150 dbSNP
rs1468632322 153 dbSNP
rs1004067581 165 dbSNP
rs771634933 170 dbSNP
rs1363481898 180 dbSNP
rs1057339760 183 dbSNP
rs1248744353 190 dbSNP
rs1232417466 191 dbSNP
rs1266587760 197 dbSNP
rs1368927816 208 dbSNP
rs1356411112 215 dbSNP
rs567042041 231 dbSNP
rs905379430 232 dbSNP
rs1001202853 235 dbSNP
rs17818431 236 dbSNP
rs1287301145 237 dbSNP
rs1172547183 238 dbSNP
rs1465924800 242 dbSNP
rs1433396766 244 dbSNP
rs1392783862 251 dbSNP
rs1194970364 253 dbSNP
rs3804044 258 dbSNP
rs992929547 263 dbSNP
rs1190519670 269 dbSNP
rs1247135015 270 dbSNP
rs559962453 273 dbSNP
rs1014823113 282 dbSNP
rs1022716532 290 dbSNP
rs1345653948 291 dbSNP
rs1282291722 294 dbSNP
rs3804043 297 dbSNP
rs1189490288 299 dbSNP
rs1341483049 300 dbSNP
rs1268687683 306 dbSNP
rs1327456256 308 dbSNP
rs999829667 308 dbSNP
rs1369032132 310 dbSNP
rs1333906885 311 dbSNP
rs1413260938 316 dbSNP
rs1457456731 319 dbSNP
rs546039693 322 dbSNP
rs563236387 323 dbSNP
rs956467881 328 dbSNP
rs973356560 329 dbSNP
rs987673251 336 dbSNP
rs1476189702 338 dbSNP
rs531880310 340 dbSNP
rs1242552228 347 dbSNP
rs415520 348 dbSNP
rs372337416 349 dbSNP
rs36073203 357 dbSNP
rs964890189 364 dbSNP
rs375205325 365 dbSNP
rs1307030901 373 dbSNP
rs1216606693 376 dbSNP
rs931804469 376 dbSNP
rs568130776 377 dbSNP
rs908479704 378 dbSNP
rs1398207670 381 dbSNP
rs912008484 381 dbSNP
rs442277 382 dbSNP
rs1052843004 384 dbSNP
rs1314078206 387 dbSNP
rs9618733 391 dbSNP
rs547874250 393 dbSNP
rs199757713 394 dbSNP
rs1409723444 400 dbSNP
rs895676786 400 dbSNP
rs1326268730 402 dbSNP
rs1411086401 403 dbSNP
rs1419823993 408 dbSNP
rs1340470960 411 dbSNP
rs1012742671 426 dbSNP
rs1188653305 426 dbSNP
rs372265007 426 dbSNP
rs1243262832 442 dbSNP
rs573882408 448 dbSNP
rs892482571 452 dbSNP
rs570818939 458 dbSNP
rs1031315884 459 dbSNP
rs144944431 475 dbSNP
rs1272813563 476 dbSNP
rs1208926978 478 dbSNP
rs1337460883 481 dbSNP
rs1009587080 482 dbSNP
rs1223776831 489 dbSNP
rs558471554 490 dbSNP
rs1371833613 498 dbSNP
rs1019191213 507 dbSNP
rs1443763466 508 dbSNP
rs1354586610 509 dbSNP
rs1463356775 510 dbSNP
rs1324847311 511 dbSNP
rs1043988089 523 dbSNP
rs536544913 527 dbSNP
rs747434211 528 dbSNP
rs965281802 539 dbSNP
rs1418223180 540 dbSNP
rs1405743157 549 dbSNP
rs1002359187 554 dbSNP
rs1470582816 555 dbSNP
rs71312731 562 dbSNP
rs1252422263 569 dbSNP
rs1212132212 571 dbSNP
rs538118946 572 dbSNP
rs974848708 577 dbSNP
rs1215555097 586 dbSNP
rs1315449496 588 dbSNP
rs1224793683 589 dbSNP
rs1377082395 595 dbSNP
rs367450 598 dbSNP
rs367451 600 dbSNP
rs1372731351 601 dbSNP
rs983486776 611 dbSNP
rs375151739 616 dbSNP
rs1452820927 619 dbSNP
rs907902050 620 dbSNP
rs1423104178 625 dbSNP
rs1161255199 644 dbSNP
rs866821768 647 dbSNP
rs1185345908 650 dbSNP
rs939362278 655 dbSNP
rs540186783 656 dbSNP
rs1472977177 664 dbSNP
rs912973639 677 dbSNP
rs917138170 677 dbSNP
rs553839592 680 dbSNP
rs1054213 682 dbSNP
rs1253887380 682 dbSNP
rs1186122504 684 dbSNP
rs1244188072 684 dbSNP
rs948564335 684 dbSNP
rs1347805911 686 dbSNP
rs576855008 694 dbSNP
rs1467898912 697 dbSNP
rs75034587 699 dbSNP
rs1401963111 700 dbSNP
rs1394754038 701 dbSNP
rs1301604128 703 dbSNP
rs1381276424 704 dbSNP
rs1310424324 729 dbSNP
rs1359689479 730 dbSNP
rs1290402467 731 dbSNP
rs1351769150 732 dbSNP
rs1400324028 734 dbSNP
rs1014974066 739 dbSNP
rs1287304646 743 dbSNP
rs1326715481 744 dbSNP
rs1378240193 745 dbSNP
rs1234964106 749 dbSNP
rs1256309928 750 dbSNP
rs935767835 758 dbSNP
rs1482817078 762 dbSNP
rs1198620553 763 dbSNP
rs1253939139 765 dbSNP
rs546422674 766 dbSNP
rs376593924 767 dbSNP
rs1486393775 776 dbSNP
rs1052836939 779 dbSNP
rs1226320095 784 dbSNP
rs11555966 785 dbSNP
rs1305405054 788 dbSNP
rs1297199972 789 dbSNP
rs995123524 790 dbSNP
rs1438114095 795 dbSNP
rs762110942 797 dbSNP
rs1027607771 807 dbSNP
rs12170347 811 dbSNP
rs891495262 821 dbSNP
rs140840130 825 dbSNP
rs985987292 826 dbSNP
rs1403090662 827 dbSNP
rs1297687018 835 dbSNP
rs1019623911 841 dbSNP
rs1475108112 846 dbSNP
rs911747341 863 dbSNP
rs576195529 865 dbSNP
rs372884504 869 dbSNP
rs1190769252 870 dbSNP
rs1475816662 874 dbSNP
rs988252542 881 dbSNP
rs528653126 889 dbSNP
rs1479341422 895 dbSNP
rs1252748774 911 dbSNP
rs913854656 912 dbSNP
rs542138871 918 dbSNP
rs952196426 920 dbSNP
rs1464896320 923 dbSNP
rs1310362499 926 dbSNP
rs188383488 926 dbSNP
rs1234835599 928 dbSNP
rs1371781800 931 dbSNP
rs1306141690 938 dbSNP
rs983537377 940 dbSNP
rs1014999814 941 dbSNP
rs1332354379 947 dbSNP
rs946780086 949 dbSNP
rs1043946410 954 dbSNP
rs527689380 956 dbSNP
rs926904016 959 dbSNP
rs938161492 963 dbSNP
rs1301582247 964 dbSNP
rs11555967 970 dbSNP
rs896670898 971 dbSNP
rs925801980 978 dbSNP
rs1014385961 979 dbSNP
rs1467758764 984 dbSNP
rs1036115213 985 dbSNP
rs1270820882 988 dbSNP
rs763101528 989 dbSNP
rs766482139 991 dbSNP
rs897480763 993 dbSNP
rs1249648472 1000 dbSNP
rs1236765186 1013 dbSNP
rs935817818 1017 dbSNP
rs994541650 1020 dbSNP
rs1310071561 1023 dbSNP
rs1440173191 1026 dbSNP
rs548689735 1027 dbSNP
rs1027555163 1029 dbSNP
rs1052890805 1031 dbSNP
rs891511165 1037 dbSNP
rs1191957477 1043 dbSNP
rs1384677831 1046 dbSNP
rs1157400903 1047 dbSNP
rs944374650 1054 dbSNP
rs1040009838 1062 dbSNP
rs900153389 1064 dbSNP
rs575726225 1071 dbSNP
rs953253793 1077 dbSNP
rs1027857125 1082 dbSNP
rs192712234 1084 dbSNP
rs1004972021 1089 dbSNP
rs759478824 1090 dbSNP
rs533248563 1098 dbSNP
rs1429613421 1102 dbSNP
rs1233685312 1104 dbSNP
rs1345761600 1116 dbSNP
rs1305942512 1117 dbSNP
rs1437445622 1122 dbSNP
rs1326281778 1127 dbSNP
rs1167291703 1135 dbSNP
rs1384221087 1136 dbSNP
rs1361762658 1138 dbSNP
rs1018756886 1140 dbSNP
rs1433606289 1145 dbSNP
rs767429797 1176 dbSNP
rs1392699184 1177 dbSNP
rs1352222430 1180 dbSNP
rs552385489 1182 dbSNP
rs752383165 1184 dbSNP
rs737984 1186 dbSNP
rs1190771402 1203 dbSNP
rs988631478 1205 dbSNP
rs1263848927 1206 dbSNP
rs914021361 1213 dbSNP
rs1484767555 1218 dbSNP
rs1293731033 1222 dbSNP
rs1280826041 1224 dbSNP
rs1491392177 1234 dbSNP
rs1491365941 1235 dbSNP
rs755818497 1237 dbSNP
rs960800344 1239 dbSNP
rs968438274 1245 dbSNP
rs1438266018 1262 dbSNP
rs569086200 1263 dbSNP
rs573741407 1264 dbSNP
rs184343943 1269 dbSNP
rs566988188 1270 dbSNP
rs373033073 1273 dbSNP
rs1414483194 1286 dbSNP
rs763618725 1289 dbSNP
rs1323555711 1290 dbSNP
rs925854288 1293 dbSNP
rs1424040693 1298 dbSNP
rs957201979 1303 dbSNP
rs1464851318 1309 dbSNP
rs143146219 1311 dbSNP
rs1239074386 1319 dbSNP
rs918038765 1320 dbSNP
rs544644486 1322 dbSNP
rs751712653 1325 dbSNP
rs1271198260 1328 dbSNP
rs912984660 1338 dbSNP
rs189236159 1340 dbSNP
rs553484230 1341 dbSNP
rs930399045 1344 dbSNP
rs377750741 1351 dbSNP
rs576898710 1352 dbSNP
rs1406596713 1353 dbSNP
rs539175459 1354 dbSNP
rs1348807629 1358 dbSNP
rs1334625525 1359 dbSNP
rs1459502073 1360 dbSNP
rs1054215 1370 dbSNP
rs1018914539 1380 dbSNP
rs9618734 1381 dbSNP
rs1400494851 1382 dbSNP
rs1163967248 1390 dbSNP
rs115561292 1396 dbSNP
rs541979994 1412 dbSNP
rs1469736275 1431 dbSNP
rs780607659 1432 dbSNP
rs1021437065 1433 dbSNP
rs182325603 1449 dbSNP
rs1381337304 1451 dbSNP
rs530364799 1452 dbSNP
rs541445940 1453 dbSNP
rs564310609 1454 dbSNP
rs1210781395 1458 dbSNP
rs959367882 1459 dbSNP
rs752844881 1473 dbSNP
rs1306465004 1475 dbSNP
rs1032933629 1477 dbSNP
rs1377214533 1486 dbSNP
rs114493347 1488 dbSNP
rs1239584427 1489 dbSNP
rs918208480 1494 dbSNP
rs755421869 1497 dbSNP
rs940166363 1499 dbSNP
rs972902918 1500 dbSNP
rs1165467941 1505 dbSNP
rs1400037463 1507 dbSNP
rs920102178 1508 dbSNP
rs989120216 1510 dbSNP
rs1473378536 1511 dbSNP
rs930346669 1522 dbSNP
rs781637058 1523 dbSNP
rs1048847283 1525 dbSNP
rs1412392166 1531 dbSNP
rs146764529 1532 dbSNP
rs1215437061 1538 dbSNP
rs140428038 1545 dbSNP
rs931651655 1546 dbSNP
rs1048685876 1552 dbSNP
rs1353763874 1553 dbSNP
rs560523033 1554 dbSNP
rs1315884925 1555 dbSNP
rs531542679 1557 dbSNP
rs1448609631 1558 dbSNP
rs1302226507 1561 dbSNP
rs1353612564 1564 dbSNP
rs778571231 1565 dbSNP
rs1429693756 1566 dbSNP
rs1009914455 1576 dbSNP
rs1299915480 1577 dbSNP
rs1020755635 1583 dbSNP
rs1289206382 1596 dbSNP
rs371287679 1598 dbSNP
rs1394532196 1599 dbSNP
rs695412 1602 dbSNP
rs1172066588 1607 dbSNP
rs1435120274 1621 dbSNP
rs1222294594 1622 dbSNP
rs1186324104 1630 dbSNP
rs1281106775 1645 dbSNP
rs1000864865 1652 dbSNP
rs1217963569 1656 dbSNP
rs185028201 1677 dbSNP
rs112111834 1678 dbSNP
rs959358455 1686 dbSNP
rs992144321 1694 dbSNP
rs551076199 1695 dbSNP
rs76235646 1702 dbSNP
rs973404390 1709 dbSNP
rs1338110955 1710 dbSNP
rs1000888770 1715 dbSNP
rs758342474 1719 dbSNP
rs1400515797 1726 dbSNP
rs1412077238 1741 dbSNP
rs1301185208 1745 dbSNP
rs1467609295 1763 dbSNP
rs1469259941 1768 dbSNP
rs920068918 1771 dbSNP
rs892452751 1779 dbSNP
rs570375901 1782 dbSNP
rs1195120619 1787 dbSNP
rs1475171324 1787 dbSNP
rs771137909 1792 dbSNP
rs539373511 1795 dbSNP
rs1010191281 1796 dbSNP
rs1256267528 1801 dbSNP
rs1020611283 1807 dbSNP
rs5993905 1810 dbSNP
rs1315894102 1814 dbSNP
rs984533164 1815 dbSNP
rs774511982 1831 dbSNP
rs942995779 1832 dbSNP
rs1218940727 1840 dbSNP
rs976280312 1846 dbSNP
rs1373622656 1852 dbSNP
rs1028717566 1856 dbSNP
rs1379962875 1861 dbSNP
rs1397906700 1861 dbSNP
rs1040013211 1862 dbSNP
rs984494364 1863 dbSNP
rs779914346 1865 dbSNP
rs922940966 1869 dbSNP
rs1198342896 1870 dbSNP
rs908907251 1871 dbSNP
rs940348632 1875 dbSNP
rs759566649 1885 dbSNP
rs1461206157 1897 dbSNP
rs1367265402 1898 dbSNP
rs1190183634 1900 dbSNP
rs972377209 1909 dbSNP
rs918132206 1912 dbSNP
rs945278213 1927 dbSNP
rs949584374 1932 dbSNP
rs1456172348 1935 dbSNP
rs375828833 1939 dbSNP
rs12158045 1947 dbSNP
rs1440240243 1948 dbSNP
rs1276869837 1950 dbSNP
rs1333847810 1952 dbSNP
rs1263667515 1956 dbSNP
rs148036669 1965 dbSNP
rs903692839 1967 dbSNP
rs1346121013 1969 dbSNP
rs1246882386 1972 dbSNP
rs1322475044 1977 dbSNP
rs1306394017 1980 dbSNP
rs905292235 1983 dbSNP
rs140805111 1987 dbSNP
rs555520989 1988 dbSNP
rs572735435 1989 dbSNP
rs1332247675 1992 dbSNP
rs73389755 1993 dbSNP
rs895211698 2001 dbSNP
rs558399283 2002 dbSNP
rs1458859403 2007 dbSNP
rs1436756310 2016 dbSNP
rs34919729 2024 dbSNP
rs397868014 2024 dbSNP
rs747741074 2029 dbSNP
rs1157538963 2032 dbSNP
rs901733367 2035 dbSNP
rs1239665818 2041 dbSNP
rs1478226805 2044 dbSNP
rs1192847801 2051 dbSNP
rs1024942225 2052 dbSNP
rs1450882729 2055 dbSNP
rs961679438 2059 dbSNP
rs997371726 2065 dbSNP
rs775392355 2067 dbSNP
rs994429013 2074 dbSNP
rs1027685600 2085 dbSNP
rs952846519 2087 dbSNP
rs984545292 2092 dbSNP
rs770258582 2096 dbSNP
rs911410181 2097 dbSNP
rs1325943262 2111 dbSNP
rs796440786 2127 dbSNP
rs1384917485 2129 dbSNP
rs976244003 2134 dbSNP
rs760369084 2139 dbSNP
rs763869425 2144 dbSNP
rs1417380704 2147 dbSNP
rs189067375 2147 dbSNP
rs542759692 2148 dbSNP
rs1042299616 2149 dbSNP
rs925231974 2153 dbSNP
rs949640870 2154 dbSNP
rs695759 2168 dbSNP
rs1229742566 2170 dbSNP
rs1200764642 2174 dbSNP
rs150231785 2177 dbSNP
rs1338159030 2179 dbSNP
rs1193634930 2180 dbSNP
rs1054855981 2189 dbSNP
rs867450485 2194 dbSNP
rs926816023 2196 dbSNP
rs894991194 2199 dbSNP
rs936813933 2203 dbSNP
rs1013633078 2204 dbSNP
rs695369 2205 dbSNP
rs1046957585 2208 dbSNP
rs529401728 2211 dbSNP
rs897148423 2213 dbSNP
rs753488221 2216 dbSNP
rs1361659495 2221 dbSNP
rs1027224005 2223 dbSNP
rs1250863592 2226 dbSNP
rs756840021 2230 dbSNP
rs1189110717 2233 dbSNP
rs1007158995 2236 dbSNP
rs1173936952 2242 dbSNP
rs1478261015 2244 dbSNP
rs1372489277 2246 dbSNP
rs1191501920 2250 dbSNP
rs1474463523 2263 dbSNP
rs1018418520 2266 dbSNP
rs1165005180 2268 dbSNP
rs1263735409 2270 dbSNP
rs57497163 2274 dbSNP
rs1440729966 2281 dbSNP
rs975852538 2283 dbSNP
rs1281057293 2289 dbSNP
rs1201238856 2293 dbSNP
rs74938744 2296 dbSNP
rs749887645 2299 dbSNP
rs9618735 2306 dbSNP
rs60598731 2323 dbSNP
rs1015973047 2326 dbSNP
rs962078930 2333 dbSNP
rs1293172861 2336 dbSNP
rs978185184 2349 dbSNP
rs993193153 2357 dbSNP
rs1414678333 2361 dbSNP
rs1399007037 2364 dbSNP
rs1025091922 2365 dbSNP
rs1466945061 2381 dbSNP
rs1424282355 2382 dbSNP
rs1162567211 2393 dbSNP
rs924963020 2400 dbSNP
rs1471886376 2402 dbSNP
rs1239283888 2403 dbSNP
rs1421685173 2410 dbSNP
rs547378209 2411 dbSNP
rs936558539 2413 dbSNP
rs781521335 2415 dbSNP
rs1247633062 2416 dbSNP
rs1319002635 2423 dbSNP
rs1289849004 2441 dbSNP
rs534150401 2442 dbSNP
rs181734874 2443 dbSNP
rs113161120 2444 dbSNP
rs1212648012 2473 dbSNP
rs1285453138 2484 dbSNP
rs1270934813 2488 dbSNP
rs1448045410 2490 dbSNP
rs1466075053 2497 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions BT474
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1395167. RNA binding protein: AGO. Condition:BT474 AGO HITS-CLIP Replicate 2 ...

- Pillai MM; Gillen AE; Yamamoto TM; Kline E; et al., 2014, Breast cancer research and treatment.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            :|| |||:  :: ||||||| 
Target 5' ugUCACCCAGGCUGGAGUGCAGu 3'
18 - 40
Article - Pillai MM; Gillen AE; Yamamoto TM; Kline E; et al.
- Breast cancer research and treatment, 2014
miRNAs regulate the expression of genes in both normal physiology and disease. While miRNAs have been demonstrated to play a pivotal role in aspects of cancer biology, these reports have generally focused on the regulation of single genes. Such single-gene approaches have significant limitations, relying on miRNA expression levels and heuristic predictions of mRNA-binding sites. This results in only circumstantial evidence of miRNA-target interaction and typically leads to large numbers of false positive predictions. Here, we used a genome-wide approach (high-throughput sequencing of RNA isolated by crosslinking immunoprecipitation, HITS-CLIP) to define direct miRNA-mRNA interactions in three breast cancer subtypes (estrogen receptor positive, Her2 amplified, and triple negative). Focusing on steroid receptor signaling, we identified two novel regulators of the ER pathway (miR-9-5p and miR-193a/b-3p), which together target multiple genes involved in ER signaling. Moreover, this approach enabled the definition of miR-9-5p as a global regulator of steroid receptor signaling in breast cancer. We show that miRNA targets and networks defined by HITS-CLIP under physiologic conditions are predictive of patient outcomes and provide global insight into miRNA regulation in breast cancer.
LinkOut: [PMID: 24906430]
CLIP-seq Support 1 for dataset GSM1395167
Method / RBP HITS-CLIP / AGO
Cell line / Condition BT474 / BT474 AGO HITS-CLIP Replicate 2
Location of target site ENST00000434570.2 | 3UTR | GAGACGGAGUCUUGCUCUGUCACCCAGGCUGGAGUGCAGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 24906430 / GSE57855
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
296 hsa-miR-4793-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092332 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT131237 ATG2A autophagy related 2A 2 2
MIRT145926 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT206559 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT226455 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT337662 ZNF695 zinc finger protein 695 2 2
MIRT405828 SIX4 SIX homeobox 4 2 2
MIRT455113 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT456756 TMEM239 transmembrane protein 239 2 4
MIRT457974 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT458173 LYRM4 LYR motif containing 4 2 4
MIRT458245 SLC9A7 solute carrier family 9 member A7 2 2
MIRT466145 TMEM120B transmembrane protein 120B 2 2
MIRT474981 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT475601 HMGB2 high mobility group box 2 2 4
MIRT480759 BMP3 bone morphogenetic protein 3 2 4
MIRT481156 AVL9 AVL9 cell migration associated 2 2
MIRT482155 AK2 adenylate kinase 2 2 2
MIRT488386 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT496575 KIF18B kinesin family member 18B 2 2
MIRT498411 TXNDC16 thioredoxin domain containing 16 2 4
MIRT504547 ZNF417 zinc finger protein 417 2 6
MIRT505417 TCF7L2 transcription factor 7 like 2 2 2
MIRT509349 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 6
MIRT512164 CD164 CD164 molecule 2 6
MIRT517238 PRIM1 DNA primase subunit 1 2 2
MIRT518671 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT519298 MLH1 mutL homolog 1 2 2
MIRT523662 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT525452 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539847 ZNF766 zinc finger protein 766 2 2
MIRT540076 SSH3 slingshot protein phosphatase 3 2 2
MIRT540320 PIGR polymeric immunoglobulin receptor 2 2
MIRT540548 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT540759 UTP6 UTP6, small subunit processome component 2 2
MIRT541545 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT541553 SLC35E1 solute carrier family 35 member E1 2 2
MIRT541666 ATP8B3 ATPase phospholipid transporting 8B3 2 4
MIRT541722 TFDP2 transcription factor Dp-2 2 2
MIRT541800 DUSP28 dual specificity phosphatase 28 2 2
MIRT541816 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT541907 VWA7 von Willebrand factor A domain containing 7 2 2
MIRT542154 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT542207 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542233 FUT9 fucosyltransferase 9 2 2
MIRT542320 SERPING1 serpin family G member 1 2 2
MIRT542369 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542476 APOC3 apolipoprotein C3 2 2
MIRT542641 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542660 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT542749 PRRG4 proline rich and Gla domain 4 2 4
MIRT542789 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT545442 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT546206 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT552270 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552655 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT554134 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT556795 KIAA1958 KIAA1958 2 2
MIRT564762 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT569428 STX7 syntaxin 7 2 2
MIRT573245 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT607390 LANCL3 LanC like 3 2 2
MIRT607430 NOTCH2NL notch 2 N-terminal like 2 2
MIRT607452 ZNF543 zinc finger protein 543 2 2
MIRT607580 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT607748 ANGPT4 angiopoietin 4 2 2
MIRT607907 SPRYD4 SPRY domain containing 4 2 2
MIRT608703 GMPR guanosine monophosphate reductase 2 2
MIRT612127 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 2 2
MIRT612786 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT616692 LPL lipoprotein lipase 2 2
MIRT617045 ZNF610 zinc finger protein 610 2 2
MIRT617091 ZNF43 zinc finger protein 43 2 2
MIRT617314 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT617355 MELK maternal embryonic leucine zipper kinase 2 2
MIRT617486 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT617579 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT617669 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT617722 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617893 PTCHD3 patched domain containing 3 2 2
MIRT617982 ZNF234 zinc finger protein 234 2 4
MIRT618434 MYLK3 myosin light chain kinase 3 2 4
MIRT618732 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT619045 CASS4 Cas scaffolding protein family member 4 2 2
MIRT619573 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT619671 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT619887 ABHD17B abhydrolase domain containing 17B 2 2
MIRT620519 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT620535 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT620996 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT621304 YIPF4 Yip1 domain family member 4 2 2
MIRT622086 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622168 SMYD1 SET and MYND domain containing 1 2 2
MIRT622543 PXMP4 peroxisomal membrane protein 4 2 2
MIRT622761 PGM3 phosphoglucomutase 3 2 2
MIRT622885 PDCL3 phosducin like 3 2 4
MIRT623130 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 2 2
MIRT624840 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT625047 MBD3 methyl-CpG binding domain protein 3 2 2
MIRT625059 ZNF556 zinc finger protein 556 2 2
MIRT625508 PPAPDC1A phospholipid phosphatase 4 2 2
MIRT625573 ANKRD42 ankyrin repeat domain 42 2 2
MIRT626133 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT626327 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626765 CDC14B cell division cycle 14B 2 2
MIRT626798 CSE1L chromosome segregation 1 like 2 2
MIRT627212 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT627225 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT627256 XKR4 XK related 4 2 2
MIRT628190 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT628466 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT628627 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT629040 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT630847 ACACB acetyl-CoA carboxylase beta 2 2
MIRT631721 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT632264 USP1 ubiquitin specific peptidase 1 2 4
MIRT632571 POLQ DNA polymerase theta 2 2
MIRT633992 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635211 ZNF286A zinc finger protein 286A 2 4
MIRT635249 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635261 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT635283 GK5 glycerol kinase 5 (putative) 2 2
MIRT635663 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT636251 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT636564 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT636814 TBC1D24 TBC1 domain family member 24 2 2
MIRT637358 ZNF460 zinc finger protein 460 2 2
MIRT637473 DEFB105B defensin beta 105B 2 4
MIRT637505 DEFB105A defensin beta 105A 2 4
MIRT637861 SC5D sterol-C5-desaturase 2 2
MIRT638080 ZNF652 zinc finger protein 652 2 2
MIRT638096 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT638174 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT638201 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT638278 SH2B3 SH2B adaptor protein 3 2 2
MIRT638714 FUT11 fucosyltransferase 11 2 2
MIRT638852 CLMP CXADR like membrane protein 2 2
MIRT639815 TMED8 transmembrane p24 trafficking protein family member 8 2 2
MIRT640879 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT640937 FAM129A family with sequence similarity 129 member A 2 2
MIRT640971 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT641642 GNAZ G protein subunit alpha z 2 2
MIRT641931 SLC25A16 solute carrier family 25 member 16 2 2
MIRT642136 CRY2 cryptochrome circadian clock 2 2 2
MIRT643199 JAK3 Janus kinase 3 2 2
MIRT643256 ZNF566 zinc finger protein 566 2 2
MIRT643378 TRIM16L tripartite motif containing 16 like 2 2
MIRT643683 AMER3 APC membrane recruitment protein 3 2 2
MIRT643728 MCMDC2 minichromosome maintenance domain containing 2 2 2
MIRT643949 CCDC141 coiled-coil domain containing 141 2 2
MIRT644915 SERF1B small EDRK-rich factor 1B 2 2
MIRT645163 NOL9 nucleolar protein 9 2 2
MIRT645547 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT645550 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT645572 TACR2 tachykinin receptor 2 2 2
MIRT646697 SERF1A small EDRK-rich factor 1A 2 2
MIRT647806 FRMD8 FERM domain containing 8 2 2
MIRT647903 CIRH1A UTP4, small subunit processome component 2 2
MIRT648978 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT649907 SLFN12L schlafen family member 12 like 2 2
MIRT650224 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT651880 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT651935 UBN1 ubinuclein 1 2 2
MIRT652839 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT652994 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT654800 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655591 OTUD7B OTU deubiquitinase 7B 2 2
MIRT658760 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT659358 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT660717 AMER1 APC membrane recruitment protein 1 2 2
MIRT660737 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT661088 TMEM145 transmembrane protein 145 2 2
MIRT661176 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT662005 ZNF445 zinc finger protein 445 2 2
MIRT662178 KIAA1210 KIAA1210 2 2
MIRT662270 OR51E2 olfactory receptor family 51 subfamily E member 2 2 2
MIRT663046 SLC16A4 solute carrier family 16 member 4 2 2
MIRT663476 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT664039 RPL27A ribosomal protein L27a 2 2
MIRT664096 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT664109 FUT1 fucosyltransferase 1 (H blood group) 2 2
MIRT664317 CD209 CD209 molecule 2 2
MIRT664455 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT664595 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 4
MIRT664694 DBF4 DBF4 zinc finger 2 2
MIRT665162 SF3A1 splicing factor 3a subunit 1 2 2
MIRT665214 RBM22 RNA binding motif protein 22 2 2
MIRT665254 ZNF286B zinc finger protein 286B 2 2
MIRT665268 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT665606 TTC39A tetratricopeptide repeat domain 39A 2 2
MIRT665830 TIMELESS timeless circadian clock 2 2
MIRT666201 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT666546 RNF115 ring finger protein 115 2 2
MIRT666602 REEP3 receptor accessory protein 3 2 2
MIRT666862 POU2F3 POU class 2 homeobox 3 2 4
MIRT666886 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT667158 NRXN3 neurexin 3 2 2
MIRT667252 NEK9 NIMA related kinase 9 2 2
MIRT667419 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT667434 METTL8 methyltransferase like 8 2 2
MIRT668023 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT668062 GPR75 G protein-coupled receptor 75 2 2
MIRT668070 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT668607 EHD4 EH domain containing 4 2 4
MIRT668694 DNAL1 dynein axonemal light chain 1 2 2
MIRT668782 DAAM1 dishevelled associated activator of morphogenesis 1 2 2
MIRT669037 CHEK1 checkpoint kinase 1 2 2
MIRT669044 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT669156 CCNG1 cyclin G1 2 2
MIRT670090 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT670206 SLC24A4 solute carrier family 24 member 4 2 2
MIRT672488 FUS FUS RNA binding protein 2 2
MIRT673830 SLC11A2 solute carrier family 11 member 2 2 2
MIRT675481 VEGFC vascular endothelial growth factor C 2 2
MIRT675634 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT677913 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678420 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678626 OLFML2A olfactomedin like 2A 2 2
MIRT678791 NUPL2 nucleoporin like 2 2 2
MIRT679561 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT680743 CA5B carbonic anhydrase 5B 2 2
MIRT682481 LIX1L limb and CNS expressed 1 like 2 4
MIRT682701 PSMD9 proteasome 26S subunit, non-ATPase 9 2 2
MIRT682759 MDM2 MDM2 proto-oncogene 2 2
MIRT682811 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682847 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT682896 XIAP X-linked inhibitor of apoptosis 2 2
MIRT682916 FAM73A mitoguardin 1 2 2
MIRT682935 ZNF292 zinc finger protein 292 2 2
MIRT682953 RPL12 ribosomal protein L12 2 2
MIRT682972 NF2 neurofibromin 2 2 2
MIRT683033 SUSD5 sushi domain containing 5 2 2
MIRT683081 A1BG alpha-1-B glycoprotein 2 2
MIRT683105 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT686640 TMEM184C transmembrane protein 184C 2 2
MIRT687444 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688401 EMC8 ER membrane protein complex subunit 8 2 2
MIRT688886 C3orf70 chromosome 3 open reading frame 70 2 2
MIRT689148 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 2 2
MIRT689234 RPS19 ribosomal protein S19 2 2
MIRT689306 C5AR2 complement component 5a receptor 2 2 2
MIRT689364 ZNF101 zinc finger protein 101 2 2
MIRT689498 SCARF1 scavenger receptor class F member 1 2 2
MIRT689655 RBM23 RNA binding motif protein 23 2 2
MIRT689897 SOD2 superoxide dismutase 2 2 2
MIRT690150 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT690601 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690805 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT690946 GLG1 golgi glycoprotein 1 2 2
MIRT691388 ATP13A4 ATPase 13A4 2 2
MIRT691408 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT692175 LRRC3C leucine rich repeat containing 3C 2 2
MIRT692235 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693283 GINM1 glycoprotein integral membrane 1 2 2
MIRT693439 TPGS1 tubulin polyglutamylase complex subunit 1 2 2
MIRT693460 HIST1H2AG histone cluster 1 H2A family member g 2 2
MIRT693768 ZNF383 zinc finger protein 383 2 2
MIRT694018 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694236 ZNF749 zinc finger protein 749 2 2
MIRT694321 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694347 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT694430 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT695763 WDR35 WD repeat domain 35 2 2
MIRT696167 TIPIN TIMELESS interacting protein 2 2
MIRT696417 DOCK7 dedicator of cytokinesis 7 2 2
MIRT696543 C3 complement C3 2 2
MIRT696998 CCDC80 coiled-coil domain containing 80 2 2
MIRT697232 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697806 UBXN2A UBX domain protein 2A 2 2
MIRT697944 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT698161 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT698778 STK4 serine/threonine kinase 4 2 2
MIRT700259 RBM12B RNA binding motif protein 12B 2 2
MIRT700970 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT701251 NUP35 nucleoporin 35 2 2
MIRT701607 MYPN myopalladin 2 2
MIRT702457 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702613 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT702691 IRGQ immunity related GTPase Q 2 2
MIRT702934 HMX3 H6 family homeobox 3 2 2
MIRT702991 HERPUD2 HERPUD family member 2 2 2
MIRT703148 GPR137C G protein-coupled receptor 137C 2 2
MIRT703980 EMC1 ER membrane protein complex subunit 1 2 2
MIRT704569 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT705065 C4orf32 family with sequence similarity 241 member A 2 2
MIRT705447 ATL2 atlastin GTPase 2 2 2
MIRT705856 AFF3 AF4/FMR2 family member 3 2 2
MIRT705886 ADIPOR2 adiponectin receptor 2 2 2
MIRT714370 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT715784 PHF12 PHD finger protein 12 2 2
MIRT715864 KIAA0101 PCNA clamp associated factor 2 2
MIRT715947 NUP93 nucleoporin 93 2 2
MIRT716132 THOC5 THO complex 5 2 2
MIRT717084 EBF4 early B-cell factor 4 2 2
MIRT725424 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT736091 GREM1 gremlin 1, DAN family BMP antagonist 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4793 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4793-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4793-3p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4793-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

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