pre-miRNA Information
pre-miRNA hsa-mir-4793   
Genomic Coordinates chr3: 48644194 - 48644280
Description Homo sapiens miR-4793 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4793-3p
Sequence 58| UCUGCACUGUGAGUUGGCUGGCU |80
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5899925 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs779602935 6 dbSNP
rs757908486 7 dbSNP
rs1422853760 15 dbSNP
rs377721296 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ANGPT4   
Synonyms ANG3, ANG4
Description angiopoietin 4
Transcript NM_015985   
Expression
Putative miRNA Targets on ANGPT4
3'UTR of ANGPT4
(miRNA target sites are highlighted)
>ANGPT4|NM_015985|3'UTR
   1 CGAGCAGCTGTGCCAGAGGCTGGACCACACAGGAGAAGCTCGGACTTGGCACTCCTGGACAACCTGGACCCAGATGCAAG
  81 ACACTGTGCCACCGCCTTCCCTGACACCCTGGGCTTCCTGAGCCAGCCCTCCTTGACCCAGAAGTCCAGAAGGGTCATCT
 161 GCCCCCCAACTCCCCTCCGTCTGTGACATGGAGGGTGTTCGGGGCCCATCCCTCTGATGTAGTCCTCGCCCCTCTTCTCT
 241 CCCTCCCCCTTCAGGGGCTCCCTGCCTGAGGGTCACAGTACCTTGAATGGGCTGAGAACAGACCAAACTTGATTCCCATG
 321 ACCAATGGTGGGGTTGCAGGCAGGTGGGAATGTATTTGCACATCGGAAGCTGCCCAGATGGCCCAGGTTCTCTCCCTTGG
 401 ATTGGCAAGAAGGCCATCTCCCATTCTAAGCTCCTGTTCCAAGATTTTCTAGTCTTGAGATGTCCTTGAACTTTCTTTTC
 481 AAGTCTGAAGGGGCTGCATCCACCCCTTAGTGGGTGGGTTAATCATTATTTCCCCTTCACACTTCACCACTTCTAGGTTC
 561 TAATGACCCTAGATCTCAGGGTCTTTAGACTTCACCACTTCTAGGCTTTACCACTTCACCACTTCTAGGCTCCAATGTTT
 641 GGAGCTCAGGGTCTTTAGGAGACCCAAAAGGACATGCTCCTTCACCTCCAGCATGTCCTAGAGGATGTGTCACAGGGAAT
 721 AACTATGGCTTGTCTCTAAAAGTACCTATGAGCAATGAGAAAAGGAAACAGCAGGTTAAGTCAAAGTGAACAGGCACTCT
 801 TCACTGCAGGACTGATCAGAGCCTTTAATATGGCCAAGTGCCTTGTGACTACCCATGAAGGGGCTAGAGTGGGCAGCTTT
 881 CTCCAAATTTACTTATTTGAAAATGGGCTCGGTTTGTCCCAGAGCATCTCACAGGACTGTAGATGCTCTTGGACAAAGCT
 961 AGTGCTCCCCTGGCATAAGGAGGAGCCCTACGACCCCATCCCCACCCCAGCTATACTCACCCTTTTTGGCTACAAGGGCC
1041 ACAGTGACAGCCTCAAACAACCTCTAAAAACAACTGGAAATAACCTTTCAGTTAAAACAGATACCATCCCTGAAGAAGGG
1121 TCTAGAACTAGGTCCCTGTCTGTGTTATAGGCTCATGTCCTCCAAGGCTCCTTCAAGTCCCAGGAAGCTGATCTCTACCT
1201 GGGTGGCTTCCCTTAGGACTCCCTGTAACCTCAACTCCCCCAGGCTCAATTACAGGGACTGTTAGGCAGGACATCTGTCT
1281 CCAAGTCCAGATCCTCTCTGCCTCCAAGCCCTAACCCCTAGCCTCCCTCCCTTCCCCATCCAGCAGTGATGCTGCCTCTG
1361 TGGTGGTAGGTGGGGAGCTGCAGGGGAGGAGATAAGGCCTCTGCCTGAGTTTGGGAGACCAGGGCCCTCATAGCTTCTTT
1441 CAGAGGATGGAGTCAGAAAGGATCCACAGCTACTCTGTCACCTGCCCCCATCACTGTGTCATGCTGTCTGCCCTGTTGTC
1521 ATCAGCCAACACCCAGGCATAGCCAGGAGCCCACCTGCCCTACCGCCAGGATACACCTCTGTCCTCAGAAGGTTTTCTCC
1601 TGGATGAGACTGAGCCAATGGGAATGGGACCCCTTCATCCCCCTGGCTCGCCCCAGCCCTGAGTCCCACTCTCAGCCGAT
1681 CCCTGAGTAAACCCAGCACAGACTGACTTTGATCTCATTCCTGGGAATTAGCACTCTTCCCCTTCAAGACTCAAAGGACA
1761 TGGTTGCTAATGGTGGCATTTCAGGCATGATGGGAAATCTTTAGGGGCAGATTGCTGCCCAGAGAGCTCAAATCGCCTTA
1841 AGCAGCATTTGCCCAGCAGACCTTTATTTAGCCTCTACTGTGTGCAGTGTGGTGTGGTGGGCAGGGCTTTGGAGTCGGAC
1921 AAACCTGCTCCAGCTCTGACACTTTGGTCCAGTGGCTCAGCCTCTCAAGGCACCAGTTATCTTCACATCATCAAAGCCTC
2001 AGTTTTCCCATCTGTAAAATGGAGATGATAATATTCCTTCCTGGCTGGGCTATGGCAAGGAGGAAATGAGACCATGTATG
2081 TCATCTTCTTAATAGAGCCTGGCATGAAGCAGGTGCCTAATAAATGTTTGTCCTCAAAGAGGAGAATGGGGTGAGGAAGG
2161 CATTCCCCAGCACATGCCGCCCCTTCTCCTGCACTCAGGTGAGGAAAAGGCATTTTATTTTTGTATCCACATCATTTATT
2241 TTTCTATTGTAGTTTCTAGGCTGACTGCAAGCTAGAGAGGAGACAGGGCAAAGCTGTGAGGCCCAGGGACAGAACTCCTC
2321 TGGGTGGGTTGAAGGCCCAAGTCCCTCTCTACTCCCATTTTATAAGGGGGCAGGAAGCTGATTTGAGTTATCCTCAGACA
2401 CCTGTTCTTTATGTAATTTTATTTTATTTTTTTGAGACAGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCATGA
2481 TCTCAGATCACTGCAATCTCTGCCTCCTGGTTCAAGTGATTCTCCTACCTCAGCCTCCTGAGTAATGGGATTACAGACGC
2561 CTACCACCACGCCCGGAAAACTTTTGTATTTTTAGTAGAAACGGGTTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCC
2641 TGGCCTCATGTGATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCATACCCAGCCTCAGACA
2721 CCTGTTCTTAAATATTCATCCTTCTTTCTTACCTTCCTTCCTCTTCCATGCCAGGACTCAGGTATAAGGGATAGAAATTC
2801 TAGCCCTAAGGAATAAATTGACTCACATAACTGGAAAGTCTAAGGGTAAAGGCAAGTGAGGTTAGATCCAGAGGCTCAAA
2881 TGATGTCAGCTCCACCTCTCAGCCCCTCCATCTGCCCCGTTGACTTCATTCTCAGCCAGGATCTTTCCTCACAAGAAGGC
2961 TCTGGCAGCCCCAGGCTCATGTCCTCCCAGCTCAGCATCCCTGACCCGGGGAGCTCCCTCGTCTCCATGATTCCAGTAAA
3041 GGAATGATTTTCTGCAGCCAGAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            :|| |||:  :: ||||||| 
Target 5' tgTCACCCAGGCTGGAGTGCAGt 3'
2451 - 2473 157.00 -19.40
2
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            :|||||  | || ||||| | 
Target 5' ccTCAGCC-TCCCAAAGTGCTGg 3'
2662 - 2683 132.00 -18.40
3
miRNA  3' ucgGUCGGUUGAG-UGUCACGUCu 5'
             ||| | ||||  || ||||| 
Target 5' gaaCAGGC-ACTCTTCACTGCAGg 3'
788 - 810 131.00 -17.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN32068132 2 COSMIC
COSN30469223 41 COSMIC
COSN30544269 50 COSMIC
COSN24307106 55 COSMIC
COSN30453759 57 COSMIC
COSN30453786 58 COSMIC
COSN30517807 66 COSMIC
COSN30450176 70 COSMIC
COSN25219225 79 COSMIC
COSN30509415 89 COSMIC
COSN26965986 93 COSMIC
COSN20504425 101 COSMIC
COSN30453060 105 COSMIC
COSN30449783 108 COSMIC
COSN31511062 111 COSMIC
COSN30457534 117 COSMIC
COSN9148846 137 COSMIC
COSN30153130 141 COSMIC
COSN30485485 153 COSMIC
COSN1880798 158 COSMIC
COSN5766880 164 COSMIC
COSN25072594 179 COSMIC
COSN1252602 228 COSMIC
COSN29676020 471 COSMIC
COSN21539438 911 COSMIC
COSN8003131 1166 COSMIC
COSN15095343 1193 COSMIC
COSN9148841 1243 COSMIC
COSN30360615 1287 COSMIC
COSN22573797 1377 COSMIC
COSN1880790 1464 COSMIC
COSN23056281 1519 COSMIC
COSN21514119 1583 COSMIC
COSN27169352 1863 COSMIC
COSN7103441 2027 COSMIC
COSN26842492 2179 COSMIC
COSN7103437 2575 COSMIC
COSN8900780 2604 COSMIC
COSN24696535 2780 COSMIC
COSN1880786 2789 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs28504506 1 dbSNP
rs754971249 2 dbSNP
rs750528347 6 dbSNP
rs541775009 11 dbSNP
rs374332736 12 dbSNP
rs370917173 19 dbSNP
rs1293820499 20 dbSNP
rs751850679 22 dbSNP
rs1284552241 25 dbSNP
rs1441082979 26 dbSNP
rs1333603155 29 dbSNP
rs1309345340 30 dbSNP
rs1429784601 32 dbSNP
rs764259122 37 dbSNP
rs368678351 41 dbSNP
rs775833469 42 dbSNP
rs1415063140 44 dbSNP
rs200751369 50 dbSNP
rs974366515 52 dbSNP
rs750130199 54 dbSNP
rs1227747657 65 dbSNP
rs556018104 69 dbSNP
rs1448653064 85 dbSNP
rs866219144 91 dbSNP
rs1008352804 93 dbSNP
rs539495797 94 dbSNP
rs1372179729 97 dbSNP
rs1325876559 100 dbSNP
rs11907018 101 dbSNP
rs1432384135 105 dbSNP
rs1010240188 106 dbSNP
rs1364096072 107 dbSNP
rs1442079141 108 dbSNP
rs1306150558 113 dbSNP
rs1369390419 116 dbSNP
rs893102560 125 dbSNP
rs1284987260 127 dbSNP
rs1318831993 128 dbSNP
rs1213830588 129 dbSNP
rs1267740978 132 dbSNP
rs1298776023 133 dbSNP
rs1054744418 135 dbSNP
rs909870451 137 dbSNP
rs1461672690 140 dbSNP
rs1254687957 143 dbSNP
rs1371492657 146 dbSNP
rs1452442532 147 dbSNP
rs1190559298 157 dbSNP
rs1178490165 158 dbSNP
rs1001724421 162 dbSNP
rs906081082 163 dbSNP
rs1387423160 165 dbSNP
rs1192958463 167 dbSNP
rs1328298196 168 dbSNP
rs1888087 168 dbSNP
rs1376252563 169 dbSNP
rs541864923 169 dbSNP
rs370362896 170 dbSNP
rs68006621 170 dbSNP
rs1287852374 172 dbSNP
rs1335668590 172 dbSNP
rs866650260 177 dbSNP
rs950188468 179 dbSNP
rs1274748693 184 dbSNP
rs917679606 188 dbSNP
rs534254863 194 dbSNP
rs185432839 196 dbSNP
rs989340235 201 dbSNP
rs73076057 204 dbSNP
rs974008246 209 dbSNP
rs1236005919 219 dbSNP
rs1475303295 224 dbSNP
rs28394391 227 dbSNP
rs531917258 228 dbSNP
rs986640085 230 dbSNP
rs1405139874 231 dbSNP
rs1330043106 232 dbSNP
rs759989563 242 dbSNP
rs569614440 246 dbSNP
rs1307443487 248 dbSNP
rs989290037 249 dbSNP
rs1390950730 250 dbSNP
rs957418381 258 dbSNP
rs552895243 260 dbSNP
rs1291663407 270 dbSNP
rs777012823 278 dbSNP
rs532966382 293 dbSNP
rs1227507872 298 dbSNP
rs200547525 299 dbSNP
rs1435521381 302 dbSNP
rs1001776709 308 dbSNP
rs1172711774 309 dbSNP
rs1452519485 312 dbSNP
rs1250354040 317 dbSNP
rs1485715928 322 dbSNP
rs879501482 323 dbSNP
rs906135450 325 dbSNP
rs1472291392 329 dbSNP
rs771326282 336 dbSNP
rs1422118880 347 dbSNP
rs1014395323 354 dbSNP
rs886580619 362 dbSNP
rs150640448 364 dbSNP
rs929695266 365 dbSNP
rs1340061902 367 dbSNP
rs547196457 381 dbSNP
rs1038032533 396 dbSNP
rs1341228153 409 dbSNP
rs1050191302 416 dbSNP
rs942309264 421 dbSNP
rs911143817 422 dbSNP
rs533875306 423 dbSNP
rs1348579395 434 dbSNP
rs1353268003 436 dbSNP
rs1261892041 438 dbSNP
rs1253517826 444 dbSNP
rs1441429818 445 dbSNP
rs1193469219 446 dbSNP
rs1244126407 449 dbSNP
rs1448036977 452 dbSNP
rs1238921999 453 dbSNP
rs1396186823 454 dbSNP
rs1334107163 468 dbSNP
rs933852104 472 dbSNP
rs527348171 489 dbSNP
rs1401446775 491 dbSNP
rs913038757 497 dbSNP
rs1457490628 498 dbSNP
rs988951466 499 dbSNP
rs375375204 502 dbSNP
rs13044064 510 dbSNP
rs1311278021 512 dbSNP
rs980076912 513 dbSNP
rs1253681495 515 dbSNP
rs970010290 517 dbSNP
rs28516449 525 dbSNP
rs926521540 533 dbSNP
rs1014447781 535 dbSNP
rs970393657 536 dbSNP
rs886632126 542 dbSNP
rs1025165383 543 dbSNP
rs1026894423 555 dbSNP
rs1470551760 562 dbSNP
rs1409163891 563 dbSNP
rs775575163 582 dbSNP
rs993963585 597 dbSNP
rs772183287 598 dbSNP
rs898244990 605 dbSNP
rs141894002 611 dbSNP
rs1015766138 621 dbSNP
rs1475336645 624 dbSNP
rs6038998 628 dbSNP
rs1256438308 632 dbSNP
rs748267857 635 dbSNP
rs6038997 658 dbSNP
rs1001825751 660 dbSNP
rs562486669 665 dbSNP
rs778802522 667 dbSNP
rs1239110834 670 dbSNP
rs1280822798 673 dbSNP
rs1207736501 675 dbSNP
rs75484836 677 dbSNP
rs933900428 683 dbSNP
rs116335959 686 dbSNP
rs1470111412 686 dbSNP
rs1267258557 691 dbSNP
rs1420259110 694 dbSNP
rs1184047786 699 dbSNP
rs1409893039 703 dbSNP
rs997272062 712 dbSNP
rs1165927164 715 dbSNP
rs1459235446 717 dbSNP
rs1291618371 718 dbSNP
rs989059727 725 dbSNP
rs901153984 728 dbSNP
rs1025869708 732 dbSNP
rs183045518 733 dbSNP
rs945456387 738 dbSNP
rs1309263464 745 dbSNP
rs926059604 750 dbSNP
rs6055458 756 dbSNP
rs970062910 762 dbSNP
rs1293523151 770 dbSNP
rs1336570606 775 dbSNP
rs1334252480 790 dbSNP
rs1265272514 794 dbSNP
rs1291710919 797 dbSNP
rs1198105035 798 dbSNP
rs1433132613 802 dbSNP
rs1482765836 806 dbSNP
rs1188815922 809 dbSNP
rs756022478 814 dbSNP
rs574901763 816 dbSNP
rs79857853 819 dbSNP
rs970825668 822 dbSNP
rs951023204 823 dbSNP
rs1170420707 830 dbSNP
rs1381581219 831 dbSNP
rs1408676372 833 dbSNP
rs1313010438 836 dbSNP
rs1380852982 843 dbSNP
rs750171388 851 dbSNP
rs995416137 860 dbSNP
rs1312397915 861 dbSNP
rs142217201 865 dbSNP
rs1231155902 870 dbSNP
rs1166988596 873 dbSNP
rs1461568277 889 dbSNP
rs1273087401 890 dbSNP
rs562986872 891 dbSNP
rs1016704659 901 dbSNP
rs1259736766 902 dbSNP
rs1006631871 907 dbSNP
rs569433350 908 dbSNP
rs1015985382 910 dbSNP
rs374495862 911 dbSNP
rs1255138649 928 dbSNP
rs1050743050 945 dbSNP
rs1243060218 951 dbSNP
rs767266431 957 dbSNP
rs1445625886 962 dbSNP
rs1388225456 963 dbSNP
rs1029016051 983 dbSNP
rs1255520373 984 dbSNP
rs891710699 985 dbSNP
rs543521853 989 dbSNP
rs12480497 991 dbSNP
rs901204935 992 dbSNP
rs12480495 994 dbSNP
rs925776640 999 dbSNP
rs763556660 1006 dbSNP
rs1271302769 1009 dbSNP
rs540063178 1010 dbSNP
rs1365051977 1012 dbSNP
rs1235697807 1016 dbSNP
rs571086937 1019 dbSNP
rs1280753278 1022 dbSNP
rs1270562991 1023 dbSNP
rs948801952 1031 dbSNP
rs1364149810 1041 dbSNP
rs547405917 1042 dbSNP
rs1261518943 1043 dbSNP
rs1487001345 1044 dbSNP
rs1362761661 1045 dbSNP
rs1327888325 1048 dbSNP
rs7262872 1049 dbSNP
rs796233888 1050 dbSNP
rs1393125836 1051 dbSNP
rs561868216 1053 dbSNP
rs1430932982 1061 dbSNP
rs993243712 1066 dbSNP
rs936529109 1071 dbSNP
rs905009378 1082 dbSNP
rs950705535 1084 dbSNP
rs547873025 1085 dbSNP
rs1318895026 1091 dbSNP
rs949327490 1098 dbSNP
rs917786485 1099 dbSNP
rs1419863706 1103 dbSNP
rs1366187892 1104 dbSNP
rs1218700548 1107 dbSNP
rs1166960312 1108 dbSNP
rs971728556 1110 dbSNP
rs1331441446 1112 dbSNP
rs973651121 1118 dbSNP
rs1207087952 1136 dbSNP
rs1397248867 1139 dbSNP
rs1265950460 1147 dbSNP
rs963567628 1148 dbSNP
rs1464279730 1150 dbSNP
rs531414589 1151 dbSNP
rs777172142 1154 dbSNP
rs953784012 1162 dbSNP
rs1029375275 1163 dbSNP
rs984519937 1166 dbSNP
rs1245055788 1191 dbSNP
rs998280198 1192 dbSNP
rs771418536 1202 dbSNP
rs1408102068 1211 dbSNP
rs891434352 1224 dbSNP
rs953020650 1224 dbSNP
rs191743686 1229 dbSNP
rs1000100866 1237 dbSNP
rs1462283149 1238 dbSNP
rs904402248 1242 dbSNP
rs976110509 1251 dbSNP
rs1326005198 1258 dbSNP
rs1044198833 1262 dbSNP
rs375001963 1266 dbSNP
rs1019791160 1267 dbSNP
rs1298773781 1268 dbSNP
rs1194266195 1269 dbSNP
rs895904491 1284 dbSNP
rs1339860256 1286 dbSNP
rs1287961872 1288 dbSNP
rs1335785385 1296 dbSNP
rs1228639119 1302 dbSNP
rs1057194126 1308 dbSNP
rs571493965 1319 dbSNP
rs187357931 1321 dbSNP
rs528017276 1327 dbSNP
rs942252295 1329 dbSNP
rs905063059 1335 dbSNP
rs910774964 1346 dbSNP
rs1250586406 1351 dbSNP
rs1475354832 1354 dbSNP
rs1165324069 1356 dbSNP
rs1412110399 1357 dbSNP
rs986302046 1371 dbSNP
rs1044906953 1377 dbSNP
rs1443829616 1378 dbSNP
rs949205321 1384 dbSNP
rs954837341 1391 dbSNP
rs1029841842 1396 dbSNP
rs1036257177 1398 dbSNP
rs940362008 1401 dbSNP
rs538601083 1415 dbSNP
rs1285676802 1422 dbSNP
rs1376703413 1429 dbSNP
rs79660388 1431 dbSNP
rs1174588063 1434 dbSNP
rs1454230409 1436 dbSNP
rs931749042 1437 dbSNP
rs1423750145 1441 dbSNP
rs921637863 1448 dbSNP
rs761171554 1471 dbSNP
rs773386076 1473 dbSNP
rs1470575600 1477 dbSNP
rs965900250 1494 dbSNP
rs551479977 1512 dbSNP
rs868790190 1537 dbSNP
rs77130209 1542 dbSNP
rs1392532678 1543 dbSNP
rs1486753851 1546 dbSNP
rs956736322 1550 dbSNP
rs1032298537 1552 dbSNP
rs1001233736 1554 dbSNP
rs6086309 1555 dbSNP
rs1022796177 1557 dbSNP
rs145180179 1564 dbSNP
rs1367222907 1565 dbSNP
rs1012719400 1570 dbSNP
rs548300798 1576 dbSNP
rs538295348 1588 dbSNP
rs575930745 1596 dbSNP
rs929388631 1597 dbSNP
rs559158310 1599 dbSNP
rs1278408236 1620 dbSNP
rs1441523807 1622 dbSNP
rs1407622812 1624 dbSNP
rs1356905780 1628 dbSNP
rs896302305 1629 dbSNP
rs1037716388 1630 dbSNP
rs531695457 1631 dbSNP
rs1434558655 1633 dbSNP
rs1357750718 1640 dbSNP
rs1213963734 1642 dbSNP
rs941972733 1647 dbSNP
rs768893139 1649 dbSNP
rs1401744358 1650 dbSNP
rs1407390211 1658 dbSNP
rs1457996213 1659 dbSNP
rs749352077 1668 dbSNP
rs1476220519 1670 dbSNP
rs1390582277 1675 dbSNP
rs931607121 1677 dbSNP
rs933506194 1678 dbSNP
rs1343784861 1681 dbSNP
rs923448030 1682 dbSNP
rs1228636501 1686 dbSNP
rs780197111 1687 dbSNP
rs921716638 1693 dbSNP
rs1482834184 1707 dbSNP
rs1463819119 1711 dbSNP
rs976949404 1716 dbSNP
rs367734682 1723 dbSNP
rs1196798409 1745 dbSNP
rs1377163967 1748 dbSNP
rs1031801559 1757 dbSNP
rs1317379435 1767 dbSNP
rs1266958551 1768 dbSNP
rs1473009756 1772 dbSNP
rs1161660027 1775 dbSNP
rs978398897 1777 dbSNP
rs1410123517 1786 dbSNP
rs1226097380 1788 dbSNP
rs968330367 1789 dbSNP
rs1022849981 1792 dbSNP
rs1388466635 1799 dbSNP
rs1320945303 1800 dbSNP
rs1336296032 1803 dbSNP
rs865835824 1807 dbSNP
rs1411193 1812 dbSNP
rs1413763995 1817 dbSNP
rs1411192 1834 dbSNP
rs182452941 1835 dbSNP
rs1432116389 1840 dbSNP
rs149030183 1841 dbSNP
rs897911879 1845 dbSNP
rs1483422191 1852 dbSNP
rs1037766569 1856 dbSNP
rs753320060 1856 dbSNP
rs1006240468 1861 dbSNP
rs1472412634 1872 dbSNP
rs75083347 1875 dbSNP
rs1023743137 1876 dbSNP
rs1459315867 1884 dbSNP
rs1161384612 1889 dbSNP
rs547887405 1891 dbSNP
rs1309361358 1897 dbSNP
rs1364946109 1897 dbSNP
rs531280552 1899 dbSNP
rs1014073893 1909 dbSNP
rs751212800 1916 dbSNP
rs568729091 1917 dbSNP
rs1004680264 1922 dbSNP
rs1187990020 1923 dbSNP
rs1486061712 1924 dbSNP
rs1243159650 1925 dbSNP
rs887702421 1933 dbSNP
rs1206705645 1939 dbSNP
rs61309987 1950 dbSNP
rs995875019 1958 dbSNP
rs1272594169 1963 dbSNP
rs532202318 1964 dbSNP
rs755675215 1975 dbSNP
rs1243650050 1984 dbSNP
rs1411191 1985 dbSNP
rs1425319460 1989 dbSNP
rs1185201817 1991 dbSNP
rs1384499766 2014 dbSNP
rs924401119 2015 dbSNP
rs1169885048 2016 dbSNP
rs117471497 2032 dbSNP
rs531941030 2049 dbSNP
rs530109271 2056 dbSNP
rs1303063625 2060 dbSNP
rs1052558316 2065 dbSNP
rs74418430 2070 dbSNP
rs544732668 2074 dbSNP
rs766879360 2081 dbSNP
rs1231269694 2091 dbSNP
rs369748419 2106 dbSNP
rs140215224 2108 dbSNP
rs545664817 2109 dbSNP
rs993364391 2114 dbSNP
rs992294869 2117 dbSNP
rs1171387576 2129 dbSNP
rs960784853 2132 dbSNP
rs1482422081 2133 dbSNP
rs1014984190 2139 dbSNP
rs367971584 2151 dbSNP
rs147817411 2156 dbSNP
rs1449942499 2158 dbSNP
rs1190439435 2161 dbSNP
rs1388322959 2167 dbSNP
rs1427398267 2168 dbSNP
rs1186617903 2169 dbSNP
rs1455501210 2170 dbSNP
rs1253087380 2178 dbSNP
rs144387995 2179 dbSNP
rs1027598424 2180 dbSNP
rs113659400 2181 dbSNP
rs1319113849 2183 dbSNP
rs1219854944 2191 dbSNP
rs1361925026 2191 dbSNP
rs1310623444 2192 dbSNP
rs889162471 2199 dbSNP
rs1262212366 2213 dbSNP
rs1050411158 2217 dbSNP
rs1210427810 2225 dbSNP
rs375311850 2227 dbSNP
rs997889427 2228 dbSNP
rs1008481340 2233 dbSNP
rs902093098 2238 dbSNP
rs891558388 2244 dbSNP
rs1052777370 2245 dbSNP
rs1175250082 2246 dbSNP
rs1204751517 2247 dbSNP
rs1412343923 2248 dbSNP
rs201283737 2255 dbSNP
rs935525236 2266 dbSNP
rs763283881 2275 dbSNP
rs1450042968 2277 dbSNP
rs1345067499 2284 dbSNP
rs1295299031 2289 dbSNP
rs1437846650 2289 dbSNP
rs1237151956 2290 dbSNP
rs904006117 2303 dbSNP
rs537434111 2315 dbSNP
rs1044016648 2317 dbSNP
rs1331536034 2320 dbSNP
rs1229977212 2321 dbSNP
rs1281910131 2321 dbSNP
rs948301640 2322 dbSNP
rs568655317 2324 dbSNP
rs916799156 2328 dbSNP
rs1198118678 2329 dbSNP
rs1372293132 2339 dbSNP
rs767731146 2351 dbSNP
rs6055442 2366 dbSNP
rs992577484 2367 dbSNP
rs77958040 2370 dbSNP
rs1398684241 2371 dbSNP
rs1167510779 2377 dbSNP
rs1299007062 2383 dbSNP
rs1424061911 2386 dbSNP
rs1461624676 2386 dbSNP
rs1308763848 2387 dbSNP
rs1352502426 2390 dbSNP
rs907976567 2391 dbSNP
rs1042809475 2392 dbSNP
rs947134921 2395 dbSNP
rs1166409608 2400 dbSNP
rs1357257610 2425 dbSNP
rs1436519562 2427 dbSNP
rs1395677289 2434 dbSNP
rs915611487 2438 dbSNP
rs1198044112 2440 dbSNP
rs1431000467 2456 dbSNP
rs1251987215 2460 dbSNP
rs1202022895 2463 dbSNP
rs1177456170 2469 dbSNP
rs1232010425 2471 dbSNP
rs1473327521 2476 dbSNP
rs1184003993 2477 dbSNP
rs1482484640 2480 dbSNP
rs991118065 2484 dbSNP
rs1027895710 2488 dbSNP
rs959950642 2493 dbSNP
rs1372486029 2510 dbSNP
rs974728428 2511 dbSNP
rs928583811 2512 dbSNP
rs972379198 2519 dbSNP
rs142205595 2524 dbSNP
rs1008534986 2529 dbSNP
rs1016103406 2537 dbSNP
rs1380440383 2537 dbSNP
rs111345580 2546 dbSNP
rs1006346874 2556 dbSNP
rs1307746814 2558 dbSNP
rs1031410089 2559 dbSNP
rs1348797140 2561 dbSNP
rs768986921 2565 dbSNP
rs999894133 2568 dbSNP
rs1416433125 2570 dbSNP
rs796595333 2571 dbSNP
rs147639206 2574 dbSNP
rs546893871 2575 dbSNP
rs1167461295 2597 dbSNP
rs1426078492 2602 dbSNP
rs775642974 2603 dbSNP
rs1031278875 2605 dbSNP
rs1403653899 2610 dbSNP
rs1451722460 2624 dbSNP
rs1321136508 2625 dbSNP
rs1367317574 2628 dbSNP
rs939357619 2629 dbSNP
rs1269099582 2634 dbSNP
rs1345231855 2635 dbSNP
rs769782196 2640 dbSNP
rs1220599822 2641 dbSNP
rs745755361 2645 dbSNP
rs1261590550 2648 dbSNP
rs1323273296 2649 dbSNP
rs1471968658 2653 dbSNP
rs6140486 2659 dbSNP
rs1189592958 2662 dbSNP
rs148704962 2680 dbSNP
rs1445799363 2690 dbSNP
rs1192515029 2694 dbSNP
rs1255852803 2700 dbSNP
rs762232753 2701 dbSNP
rs1247370682 2702 dbSNP
rs1043866052 2712 dbSNP
rs1047878941 2716 dbSNP
rs930721915 2719 dbSNP
rs1428937293 2720 dbSNP
rs920652819 2738 dbSNP
rs974993087 2739 dbSNP
rs544646771 2750 dbSNP
rs1386987003 2751 dbSNP
rs1353390213 2753 dbSNP
rs1316933289 2761 dbSNP
rs1331188831 2761 dbSNP
rs776715401 2780 dbSNP
rs190275406 2783 dbSNP
rs911819681 2785 dbSNP
rs768606303 2804 dbSNP
rs1322460607 2816 dbSNP
rs1229344587 2818 dbSNP
rs1270457361 2821 dbSNP
rs1349081290 2828 dbSNP
rs1205076785 2835 dbSNP
rs987333558 2837 dbSNP
rs955739435 2838 dbSNP
rs1197411765 2845 dbSNP
rs1268419834 2851 dbSNP
rs185335286 2860 dbSNP
rs545133020 2865 dbSNP
rs1327157418 2867 dbSNP
rs1365325642 2871 dbSNP
rs1451460289 2874 dbSNP
rs781154955 2876 dbSNP
rs76423900 2882 dbSNP
rs1391419162 2883 dbSNP
rs1425984904 2884 dbSNP
rs6086306 2890 dbSNP
rs1415572621 2897 dbSNP
rs999777898 2899 dbSNP
rs543265471 2903 dbSNP
rs1344436117 2910 dbSNP
rs1410062055 2915 dbSNP
rs1290536763 2916 dbSNP
rs553266630 2918 dbSNP
rs180710924 2919 dbSNP
rs574287547 2920 dbSNP
rs1359135525 2924 dbSNP
rs1220283849 2927 dbSNP
rs747124918 2932 dbSNP
rs1291170985 2935 dbSNP
rs1394229913 2939 dbSNP
rs868262184 2940 dbSNP
rs940597874 2946 dbSNP
rs1417073514 2948 dbSNP
rs1387118571 2953 dbSNP
rs1022684669 2958 dbSNP
rs1368939038 2974 dbSNP
rs188842930 2979 dbSNP
rs895298842 2981 dbSNP
rs1364424177 2985 dbSNP
rs184174581 2986 dbSNP
rs1409106001 2999 dbSNP
rs574849994 3007 dbSNP
rs537460999 3008 dbSNP
rs1391156298 3010 dbSNP
rs1313911530 3012 dbSNP
rs1368260980 3014 dbSNP
rs976558603 3016 dbSNP
rs192288308 3019 dbSNP
rs6055439 3020 dbSNP
rs190294913 3021 dbSNP
rs796813541 3022 dbSNP
rs904120736 3033 dbSNP
rs144239003 3054 dbSNP
rs757982688 3057 dbSNP
rs1480444987 3058 dbSNP
rs1194975343 3060 dbSNP
rs1012383416 3061 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions BT474
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1395167. RNA binding protein: AGO. Condition:BT474 AGO HITS-CLIP Replicate 2 ...

- Pillai MM; Gillen AE; Yamamoto TM; Kline E; et al., 2014, Breast cancer research and treatment.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            :|| |||:  :: ||||||| 
Target 5' ugUCACCCAGGCUGGAGUGCAGu 3'
15 - 37
2
miRNA  3' ucggucgguugaGUGUCAcgucu 5'
                      || |||     
Target 5' -----------aCAGAGUcucac 3'
1 - 12
Article - Pillai MM; Gillen AE; Yamamoto TM; Kline E; et al.
- Breast cancer research and treatment, 2014
miRNAs regulate the expression of genes in both normal physiology and disease. While miRNAs have been demonstrated to play a pivotal role in aspects of cancer biology, these reports have generally focused on the regulation of single genes. Such single-gene approaches have significant limitations, relying on miRNA expression levels and heuristic predictions of mRNA-binding sites. This results in only circumstantial evidence of miRNA-target interaction and typically leads to large numbers of false positive predictions. Here, we used a genome-wide approach (high-throughput sequencing of RNA isolated by crosslinking immunoprecipitation, HITS-CLIP) to define direct miRNA-mRNA interactions in three breast cancer subtypes (estrogen receptor positive, Her2 amplified, and triple negative). Focusing on steroid receptor signaling, we identified two novel regulators of the ER pathway (miR-9-5p and miR-193a/b-3p), which together target multiple genes involved in ER signaling. Moreover, this approach enabled the definition of miR-9-5p as a global regulator of steroid receptor signaling in breast cancer. We show that miRNA targets and networks defined by HITS-CLIP under physiologic conditions are predictive of patient outcomes and provide global insight into miRNA regulation in breast cancer.
LinkOut: [PMID: 24906430]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions Prostate Tissue
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRX1760631. RNA binding protein: AGO2. Condition:AGO-CLIP-22RV1_B ...

- Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al., 2016, Neoplasia (New York, N.Y.).

Article - Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al.
- Neoplasia (New York, N.Y.), 2016
MicroRNA (miRNA) deregulation in prostate cancer (PCa) contributes to PCa initiation and metastatic progression. To comprehensively define the cancer-associated changes in miRNA targeting and function in commonly studied models of PCa, we performed photoactivatable ribonucleoside-enhanced cross-linking immunoprecipitation of the Argonaute protein in a panel of PCa cell lines modeling different stages of PCa progression. Using this comprehensive catalogue of miRNA targets, we analyzed miRNA targeting on known drivers of PCa and examined tissue-specific and stage-specific pathway targeting by miRNAs. We found that androgen receptor is the most frequently targeted PCa oncogene and that miR-148a targets the largest number of known PCa drivers. Globally, tissue-specific and stage-specific changes in miRNA targeting are driven by homeostatic response to active oncogenic pathways. Our findings indicate that, even in advanced PCa, the miRNA pool adapts to regulate continuing alterations in the cancer genome to balance oncogenic molecular changes. These findings are important because they are the first to globally characterize miRNA changes in PCa and demonstrate how the miRNA target spectrum responds to staged tumorigenesis.
LinkOut: [PMID: 27292025]
CLIP-seq Support 1 for dataset GSM1395167
Method / RBP HITS-CLIP / AGO
Cell line / Condition BT474 / BT474 AGO HITS-CLIP Replicate 2
Location of target site ENST00000381922.3 | 3UTR | ACAGAGUCUCACUCUGUCACCCAGGCUGGAGUGCAGUGGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 24906430 / GSE57855
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
296 hsa-miR-4793-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092332 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT131237 ATG2A autophagy related 2A 2 2
MIRT145926 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT206559 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT226455 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT337662 ZNF695 zinc finger protein 695 2 2
MIRT405828 SIX4 SIX homeobox 4 2 2
MIRT455113 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT456756 TMEM239 transmembrane protein 239 2 4
MIRT457974 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT458173 LYRM4 LYR motif containing 4 2 4
MIRT458245 SLC9A7 solute carrier family 9 member A7 2 2
MIRT466145 TMEM120B transmembrane protein 120B 2 2
MIRT474981 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT475601 HMGB2 high mobility group box 2 2 4
MIRT480759 BMP3 bone morphogenetic protein 3 2 4
MIRT481156 AVL9 AVL9 cell migration associated 2 2
MIRT482155 AK2 adenylate kinase 2 2 2
MIRT488386 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT496575 KIF18B kinesin family member 18B 2 2
MIRT498411 TXNDC16 thioredoxin domain containing 16 2 4
MIRT504547 ZNF417 zinc finger protein 417 2 6
MIRT505417 TCF7L2 transcription factor 7 like 2 2 2
MIRT509349 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 6
MIRT512164 CD164 CD164 molecule 2 6
MIRT517238 PRIM1 DNA primase subunit 1 2 2
MIRT518671 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT519298 MLH1 mutL homolog 1 2 2
MIRT523662 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT525452 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539847 ZNF766 zinc finger protein 766 2 2
MIRT540076 SSH3 slingshot protein phosphatase 3 2 2
MIRT540320 PIGR polymeric immunoglobulin receptor 2 2
MIRT540548 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT540759 UTP6 UTP6, small subunit processome component 2 2
MIRT541545 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT541553 SLC35E1 solute carrier family 35 member E1 2 2
MIRT541666 ATP8B3 ATPase phospholipid transporting 8B3 2 4
MIRT541722 TFDP2 transcription factor Dp-2 2 2
MIRT541800 DUSP28 dual specificity phosphatase 28 2 2
MIRT541816 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT541907 VWA7 von Willebrand factor A domain containing 7 2 2
MIRT542154 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT542207 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542233 FUT9 fucosyltransferase 9 2 2
MIRT542320 SERPING1 serpin family G member 1 2 2
MIRT542369 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542476 APOC3 apolipoprotein C3 2 2
MIRT542641 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542660 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT542749 PRRG4 proline rich and Gla domain 4 2 4
MIRT542789 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT545442 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT546206 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT552270 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552655 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT554134 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT556795 KIAA1958 KIAA1958 2 2
MIRT564762 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT569428 STX7 syntaxin 7 2 2
MIRT573245 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT607390 LANCL3 LanC like 3 2 2
MIRT607430 NOTCH2NL notch 2 N-terminal like 2 2
MIRT607452 ZNF543 zinc finger protein 543 2 2
MIRT607580 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT607748 ANGPT4 angiopoietin 4 2 2
MIRT607907 SPRYD4 SPRY domain containing 4 2 2
MIRT608703 GMPR guanosine monophosphate reductase 2 2
MIRT612127 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 2 2
MIRT612786 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT616692 LPL lipoprotein lipase 2 2
MIRT617045 ZNF610 zinc finger protein 610 2 2
MIRT617091 ZNF43 zinc finger protein 43 2 2
MIRT617314 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT617355 MELK maternal embryonic leucine zipper kinase 2 2
MIRT617486 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT617579 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT617669 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT617722 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617893 PTCHD3 patched domain containing 3 2 2
MIRT617982 ZNF234 zinc finger protein 234 2 4
MIRT618434 MYLK3 myosin light chain kinase 3 2 4
MIRT618732 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT619045 CASS4 Cas scaffolding protein family member 4 2 2
MIRT619573 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT619671 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT619887 ABHD17B abhydrolase domain containing 17B 2 2
MIRT620519 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT620535 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT620996 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT621304 YIPF4 Yip1 domain family member 4 2 2
MIRT622086 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622168 SMYD1 SET and MYND domain containing 1 2 2
MIRT622543 PXMP4 peroxisomal membrane protein 4 2 2
MIRT622761 PGM3 phosphoglucomutase 3 2 2
MIRT622885 PDCL3 phosducin like 3 2 4
MIRT623130 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 2 2
MIRT624840 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT625047 MBD3 methyl-CpG binding domain protein 3 2 2
MIRT625059 ZNF556 zinc finger protein 556 2 2
MIRT625508 PPAPDC1A phospholipid phosphatase 4 2 2
MIRT625573 ANKRD42 ankyrin repeat domain 42 2 2
MIRT626133 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT626327 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626765 CDC14B cell division cycle 14B 2 2
MIRT626798 CSE1L chromosome segregation 1 like 2 2
MIRT627212 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT627225 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT627256 XKR4 XK related 4 2 2
MIRT628190 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT628466 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT628627 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT629040 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT630847 ACACB acetyl-CoA carboxylase beta 2 2
MIRT631721 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT632264 USP1 ubiquitin specific peptidase 1 2 4
MIRT632571 POLQ DNA polymerase theta 2 2
MIRT633992 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635211 ZNF286A zinc finger protein 286A 2 4
MIRT635249 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635261 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT635283 GK5 glycerol kinase 5 (putative) 2 2
MIRT635663 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT636251 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT636564 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT636814 TBC1D24 TBC1 domain family member 24 2 2
MIRT637358 ZNF460 zinc finger protein 460 2 2
MIRT637473 DEFB105B defensin beta 105B 2 4
MIRT637505 DEFB105A defensin beta 105A 2 4
MIRT637861 SC5D sterol-C5-desaturase 2 2
MIRT638080 ZNF652 zinc finger protein 652 2 2
MIRT638096 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT638174 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT638201 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT638278 SH2B3 SH2B adaptor protein 3 2 2
MIRT638714 FUT11 fucosyltransferase 11 2 2
MIRT638852 CLMP CXADR like membrane protein 2 2
MIRT639815 TMED8 transmembrane p24 trafficking protein family member 8 2 2
MIRT640879 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT640937 FAM129A family with sequence similarity 129 member A 2 2
MIRT640971 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT641642 GNAZ G protein subunit alpha z 2 2
MIRT641931 SLC25A16 solute carrier family 25 member 16 2 2
MIRT642136 CRY2 cryptochrome circadian clock 2 2 2
MIRT643199 JAK3 Janus kinase 3 2 2
MIRT643256 ZNF566 zinc finger protein 566 2 2
MIRT643378 TRIM16L tripartite motif containing 16 like 2 2
MIRT643683 AMER3 APC membrane recruitment protein 3 2 2
MIRT643728 MCMDC2 minichromosome maintenance domain containing 2 2 2
MIRT643949 CCDC141 coiled-coil domain containing 141 2 2
MIRT644915 SERF1B small EDRK-rich factor 1B 2 2
MIRT645163 NOL9 nucleolar protein 9 2 2
MIRT645547 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT645550 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT645572 TACR2 tachykinin receptor 2 2 2
MIRT646697 SERF1A small EDRK-rich factor 1A 2 2
MIRT647806 FRMD8 FERM domain containing 8 2 2
MIRT647903 CIRH1A UTP4, small subunit processome component 2 2
MIRT648978 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT649907 SLFN12L schlafen family member 12 like 2 2
MIRT650224 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT651880 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT651935 UBN1 ubinuclein 1 2 2
MIRT652839 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT652994 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT654800 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655591 OTUD7B OTU deubiquitinase 7B 2 2
MIRT658760 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT659358 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT660717 AMER1 APC membrane recruitment protein 1 2 2
MIRT660737 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT661088 TMEM145 transmembrane protein 145 2 2
MIRT661176 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT662005 ZNF445 zinc finger protein 445 2 2
MIRT662178 KIAA1210 KIAA1210 2 2
MIRT662270 OR51E2 olfactory receptor family 51 subfamily E member 2 2 2
MIRT663046 SLC16A4 solute carrier family 16 member 4 2 2
MIRT663476 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT664039 RPL27A ribosomal protein L27a 2 2
MIRT664096 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT664109 FUT1 fucosyltransferase 1 (H blood group) 2 2
MIRT664317 CD209 CD209 molecule 2 2
MIRT664455 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT664595 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 4
MIRT664694 DBF4 DBF4 zinc finger 2 2
MIRT665162 SF3A1 splicing factor 3a subunit 1 2 2
MIRT665214 RBM22 RNA binding motif protein 22 2 2
MIRT665254 ZNF286B zinc finger protein 286B 2 2
MIRT665268 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT665606 TTC39A tetratricopeptide repeat domain 39A 2 2
MIRT665830 TIMELESS timeless circadian clock 2 2
MIRT666201 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT666546 RNF115 ring finger protein 115 2 2
MIRT666602 REEP3 receptor accessory protein 3 2 2
MIRT666862 POU2F3 POU class 2 homeobox 3 2 4
MIRT666886 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT667158 NRXN3 neurexin 3 2 2
MIRT667252 NEK9 NIMA related kinase 9 2 2
MIRT667419 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT667434 METTL8 methyltransferase like 8 2 2
MIRT668023 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT668062 GPR75 G protein-coupled receptor 75 2 2
MIRT668070 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT668607 EHD4 EH domain containing 4 2 4
MIRT668694 DNAL1 dynein axonemal light chain 1 2 2
MIRT668782 DAAM1 dishevelled associated activator of morphogenesis 1 2 2
MIRT669037 CHEK1 checkpoint kinase 1 2 2
MIRT669044 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT669156 CCNG1 cyclin G1 2 2
MIRT670090 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT670206 SLC24A4 solute carrier family 24 member 4 2 2
MIRT672488 FUS FUS RNA binding protein 2 2
MIRT673830 SLC11A2 solute carrier family 11 member 2 2 2
MIRT675481 VEGFC vascular endothelial growth factor C 2 2
MIRT675634 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT677913 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678420 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678626 OLFML2A olfactomedin like 2A 2 2
MIRT678791 NUPL2 nucleoporin like 2 2 2
MIRT679561 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT680743 CA5B carbonic anhydrase 5B 2 2
MIRT682481 LIX1L limb and CNS expressed 1 like 2 4
MIRT682701 PSMD9 proteasome 26S subunit, non-ATPase 9 2 2
MIRT682759 MDM2 MDM2 proto-oncogene 2 2
MIRT682811 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682847 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT682896 XIAP X-linked inhibitor of apoptosis 2 2
MIRT682916 FAM73A mitoguardin 1 2 2
MIRT682935 ZNF292 zinc finger protein 292 2 2
MIRT682953 RPL12 ribosomal protein L12 2 2
MIRT682972 NF2 neurofibromin 2 2 2
MIRT683033 SUSD5 sushi domain containing 5 2 2
MIRT683081 A1BG alpha-1-B glycoprotein 2 2
MIRT683105 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT686640 TMEM184C transmembrane protein 184C 2 2
MIRT687444 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688401 EMC8 ER membrane protein complex subunit 8 2 2
MIRT688886 C3orf70 chromosome 3 open reading frame 70 2 2
MIRT689148 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 2 2
MIRT689234 RPS19 ribosomal protein S19 2 2
MIRT689306 C5AR2 complement component 5a receptor 2 2 2
MIRT689364 ZNF101 zinc finger protein 101 2 2
MIRT689498 SCARF1 scavenger receptor class F member 1 2 2
MIRT689655 RBM23 RNA binding motif protein 23 2 2
MIRT689897 SOD2 superoxide dismutase 2 2 2
MIRT690150 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT690601 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690805 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT690946 GLG1 golgi glycoprotein 1 2 2
MIRT691388 ATP13A4 ATPase 13A4 2 2
MIRT691408 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT692175 LRRC3C leucine rich repeat containing 3C 2 2
MIRT692235 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693283 GINM1 glycoprotein integral membrane 1 2 2
MIRT693439 TPGS1 tubulin polyglutamylase complex subunit 1 2 2
MIRT693460 HIST1H2AG histone cluster 1 H2A family member g 2 2
MIRT693768 ZNF383 zinc finger protein 383 2 2
MIRT694018 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694236 ZNF749 zinc finger protein 749 2 2
MIRT694321 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694347 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT694430 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT695763 WDR35 WD repeat domain 35 2 2
MIRT696167 TIPIN TIMELESS interacting protein 2 2
MIRT696417 DOCK7 dedicator of cytokinesis 7 2 2
MIRT696543 C3 complement C3 2 2
MIRT696998 CCDC80 coiled-coil domain containing 80 2 2
MIRT697232 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697806 UBXN2A UBX domain protein 2A 2 2
MIRT697944 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT698161 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT698778 STK4 serine/threonine kinase 4 2 2
MIRT700259 RBM12B RNA binding motif protein 12B 2 2
MIRT700970 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT701251 NUP35 nucleoporin 35 2 2
MIRT701607 MYPN myopalladin 2 2
MIRT702457 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702613 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT702691 IRGQ immunity related GTPase Q 2 2
MIRT702934 HMX3 H6 family homeobox 3 2 2
MIRT702991 HERPUD2 HERPUD family member 2 2 2
MIRT703148 GPR137C G protein-coupled receptor 137C 2 2
MIRT703980 EMC1 ER membrane protein complex subunit 1 2 2
MIRT704569 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT705065 C4orf32 family with sequence similarity 241 member A 2 2
MIRT705447 ATL2 atlastin GTPase 2 2 2
MIRT705856 AFF3 AF4/FMR2 family member 3 2 2
MIRT705886 ADIPOR2 adiponectin receptor 2 2 2
MIRT714370 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT715784 PHF12 PHD finger protein 12 2 2
MIRT715864 KIAA0101 PCNA clamp associated factor 2 2
MIRT715947 NUP93 nucleoporin 93 2 2
MIRT716132 THOC5 THO complex 5 2 2
MIRT717084 EBF4 early B-cell factor 4 2 2
MIRT725424 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT736091 GREM1 gremlin 1, DAN family BMP antagonist 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4793 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4793-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4793-3p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4793-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

Error report submission