pre-miRNA Information
pre-miRNA hsa-mir-4291   
Genomic Coordinates chr9: 93819357 - 93819421
Description Homo sapiens miR-4291 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4291
Sequence 11| UUCAGCAGGAACAGCU |26
Evidence Experimental
Experiments SOLiD
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1265713434 9 dbSNP
rs1433969451 12 dbSNP
rs1372852268 16 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol FOXI2   
Synonyms -
Description forkhead box I2
Transcript NM_207426   
Expression
Putative miRNA Targets on FOXI2
3'UTR of FOXI2
(miRNA target sites are highlighted)
>FOXI2|NM_207426|3'UTR
   1 AGGGAGGCTGGAGGCTAGCCGGGTGCGGGTCCAGAGGTGCTGAGCTCAGGCCTCCGGTTTCCCCTGGTGACAGCCCCACG
  81 TGTTGGCGTTGAAGGCCTTGGTGCCCTGGGAGGAAGCGCAGAGCCGGGGGCGGCTCGGCCAGCAGGGAGCTGGGCTGAGC
 161 GGCTCTTGGGCTTTGGGGTGGGTGGCCCTTCTGCTGTGCACCCCTCACCCAGGCGACCTTCGGAACCTCCCTGCTCTGCC
 241 TCTAAGTCCAGCCGCCCTGGGCGTCTAGAACCTGTGCTCTCGAGGGATTTGCCTTGAAGGGGCGGCGGGTCGGCCCTCAG
 321 CTCCAGCGTTTTCCAAGGAGGCTGGCTGACTCCAAAGAGCCTTAGAGCAGATGGGAAGAAGGTGGGCTGCCAGAGCGGCC
 401 CAGGTGGTGGGGGCCCTTTCCACCTCCACCCAGCTTGGCCCACCTGGCTCAGGGCCTTCCCTTCTGCTTCAGGGAAGCTG
 481 CCGCAGGGGCTGGGGGACAGAGCTCAGGAGCAGCTGCAGTGGGCTCCAGGTGGGCCAGGAGCCTGCAGTGAGGGGATCTG
 561 AGACAGTTGGCATTGGGTCCTGTGTAAGGAAGGTCTTGCTAATGGTTGGAACTGCTGGTGGTGGGAGGGAGAAGCACTGC
 641 GTGGGCAGAAAGCGCCCTTGGGATACCAGCTCCCTTCCCTGTCACTCAGCCCTGGTCCTTGATGACCCCCCTCTAGGACA
 721 AGGCAACTCCCCAGGGCCCCGCCACCACTGACCACAGGAGCGGTGCCCAGCACCCAGGAGTTCCCCAAGGGTCCAGGTTT
 801 GTGCCACCCACACCCACACTCACACCCACACTCACACCCACACTCACACCCACACCCACACCCACACCCACACTCACACT
 881 CACACTCACACCCACACTCACACCCACACTCACACCCACACCCACACCCACACTCACACACACTCACACCCACACCCACA
 961 CTCACACCCACACACACTCACACCCACACACACCCACACTCATACTCACACTCACACCCACACTCACACCACACCCACAC
1041 TCACACTGACACCCACACTCACACCCACACTCACACTGACACCCACACTCACACCCACACTCATACTCACACTCACACCC
1121 ACACTCACACTCACACCCACACTCACACCACACTCACACCCACACACACCCACACTCATACTCACACCCACACCCACACT
1201 CATACTCACACACCCACACCCACACCCACACCCACACCCACACCCACACCCACACTCACACAGGCTCATGGAAGGCCACA
1281 CTTGTTTTGGTCTCTTTCCCCTCCAAACCCACAGTTTGAGCCAAAGCTGTGCGTGTGTTCAGAGCTCCTGAACAGCAGCC
1361 TCCTGTGTAAATTGAACCCTGCCCCACCCAGTTCCTTCTTAGGGATGGTATCTTTGTGAAGGACAAGGAGCCCCCAGTCA
1441 CTGGGAAGAGGAATTTTTTGGCCTCTGTACTCCTTAGAGGACCTAAGTGCCCCAGTCAGATGCCCTGAGTCTTTGTGGCA
1521 TCTGGGACTCCCTGGAGATGGAGACGTTGGTGGGGGGGGGGTACCCACCTTGTTGTTGATGGGGGTACCTATCTTCCCTG
1601 CATTTTGGGGGAGGGTGGGAGGGGTCCTTCCCAGGAAGAGAGTGGAGACAGGTTACTGTTACTTTGGAGTGGGACAGGCT
1681 GGTTTAGCAATCCTAAGCCCCAGCCACGCAGGTATTCCTGATCTGCCTGCAGGGCCCCTCACTGCAGCTGCCACCAGTGC
1761 TGGAAATGAGAGCAGGGCTCCTGACTGTCCCTAGAGCTGACTCATCATGGCCCTGCTGAAGAGTGAGGTGTGTGTGTGTG
1841 TGTGCGTGTGTGCGTAAGACAGAGAGGGAGGGAGAAGGAAGGAGGCGGGGGAACATGGAGAGAAGGAGCCAGGAGTTGGG
1921 ATAAACCTGGCCCTGGTCATATGTTTCATCAGCAGTGGCTCCTAACTCCACGTGCCATCTCTGCTGCTGCCCTCCACAAG
2001 CAGGTGAGCAGAGTGCCAGTTGTGTTGAAGGTGATGATGTCGCCTAACTAAACTCACAACCAACCCGCAATCTCTCTTGG
2081 GGGGACACTCCCCATAAGCAATACAATTAAAGAAGACCAGGAAAGGAAAATAAATTCCTTAGCTTATACATTTAAAAAGT
2161 ATCCCTTGAACCTATTTTAATAGAATGAAATGCTAAAAATAAAGACCAATATAACATACAT
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucgACAAGGACGACUu 5'
             ||  |||||||| 
Target 5' tcaTGGCCCTGCTGAa 3'
1805 - 1820 149.00 -15.30
2
miRNA  3' ucgacaAGGACGACuu 5'
                |:||||||  
Target 5' tggcccTTCTGCTGtg 3'
183 - 198 126.00 -10.70
3
miRNA  3' ucGACAAGGACGACUu 5'
            :||   ||||||: 
Target 5' ggTTGGAACTGCTGGt 3'
604 - 619 126.00 -14.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30616856 8 COSMIC
COSN30511209 22 COSMIC
COSN26976657 28 COSMIC
COSN8407177 31 COSMIC
COSN31510375 38 COSMIC
COSN13260773 56 COSMIC
COSN30496649 92 COSMIC
COSN32076164 127 COSMIC
COSN1114808 226 COSMIC
COSN15039061 282 COSMIC
COSN15006445 307 COSMIC
COSN20092258 339 COSMIC
COSN20226661 486 COSMIC
COSN1114809 547 COSMIC
COSN26030274 649 COSMIC
COSN24556517 738 COSMIC
COSN25682571 742 COSMIC
COSN20107770 839 COSMIC
COSN20092259 845 COSMIC
COSN32065607 851 COSMIC
COSN32062975 863 COSMIC
COSN14967020 869 COSMIC
COSN32063808 875 COSMIC
COSN32064665 888 COSMIC
COSN20370194 899 COSMIC
COSN31870633 911 COSMIC
COSN19250301 1019 COSMIC
COSN23946564 1049 COSMIC
COSN505733 1049 COSMIC
COSN32064310 1079 COSMIC
COSN23043262 1108 COSMIC
COSN23043095 1120 COSMIC
COSN17076100 1525 COSMIC
COSN21214407 1555 COSMIC
COSN27202045 1562 COSMIC
COSN27558405 1562 COSMIC
COSN6404557 1562 COSMIC
COSN32065522 1617 COSMIC
COSN24851234 1621 COSMIC
COSN26878006 1781 COSMIC
COSN23393165 1844 COSMIC
COSN17817607 1899 COSMIC
COSN20107771 1934 COSMIC
COSN32064479 1954 COSMIC
COSN23405337 2043 COSMIC
COSN16754994 2065 COSMIC
COSN15668423 2068 COSMIC
COSN29889757 2084 COSMIC
COSN29929847 2155 COSMIC
COSN5248374 2219 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs762613364 3 dbSNP
rs752988740 6 dbSNP
rs201656253 8 dbSNP
rs1340679104 11 dbSNP
rs764554847 12 dbSNP
rs1276105560 17 dbSNP
rs373131983 21 dbSNP
rs1199206719 23 dbSNP
rs757893269 24 dbSNP
rs1483003516 25 dbSNP
rs780826714 27 dbSNP
rs749992805 28 dbSNP
rs1486132299 29 dbSNP
rs755679560 32 dbSNP
rs376881710 34 dbSNP
rs1479001212 37 dbSNP
rs1171817847 38 dbSNP
rs748975491 39 dbSNP
rs768334353 42 dbSNP
rs533147899 46 dbSNP
rs551373207 56 dbSNP
rs1282152466 66 dbSNP
rs906226936 74 dbSNP
rs1001806315 77 dbSNP
rs1033417843 80 dbSNP
rs893548383 104 dbSNP
rs1011034813 107 dbSNP
rs912198027 108 dbSNP
rs1020794938 113 dbSNP
rs1445630713 118 dbSNP
rs966917400 124 dbSNP
rs1039638917 125 dbSNP
rs1264453732 126 dbSNP
rs1424572173 126 dbSNP
rs1470978975 126 dbSNP
rs914506991 127 dbSNP
rs1180622661 128 dbSNP
rs1477864160 129 dbSNP
rs1195161913 131 dbSNP
rs976716385 132 dbSNP
rs1029569516 134 dbSNP
rs1361798303 137 dbSNP
rs1358553917 141 dbSNP
rs1287502319 142 dbSNP
rs1041918296 143 dbSNP
rs569770508 152 dbSNP
rs1279231866 154 dbSNP
rs1408225141 155 dbSNP
rs534328434 156 dbSNP
rs750513664 160 dbSNP
rs985452363 161 dbSNP
rs896489652 162 dbSNP
rs910009010 163 dbSNP
rs1320722480 172 dbSNP
rs1401704369 181 dbSNP
rs1401952471 182 dbSNP
rs1407680796 201 dbSNP
rs941427522 210 dbSNP
rs144354907 215 dbSNP
rs1023827389 216 dbSNP
rs1430789685 218 dbSNP
rs963311804 221 dbSNP
rs1330559131 223 dbSNP
rs1887006 226 dbSNP
rs1217820877 227 dbSNP
rs1276812390 231 dbSNP
rs1351977025 234 dbSNP
rs918774238 235 dbSNP
rs950237891 237 dbSNP
rs1239787319 243 dbSNP
rs1287403044 245 dbSNP
rs7897930 246 dbSNP
rs951585963 248 dbSNP
rs112190337 255 dbSNP
rs1432108101 257 dbSNP
rs1344986871 261 dbSNP
rs1318870747 262 dbSNP
rs1455342516 264 dbSNP
rs1264735879 266 dbSNP
rs373558449 273 dbSNP
rs1176679664 292 dbSNP
rs571607993 295 dbSNP
rs1422437785 297 dbSNP
rs751786422 303 dbSNP
rs1188268346 304 dbSNP
rs142266253 305 dbSNP
rs1206546461 307 dbSNP
rs963698547 308 dbSNP
rs975100272 312 dbSNP
rs1203241479 328 dbSNP
rs1310588967 334 dbSNP
rs1297800648 335 dbSNP
rs1010670117 336 dbSNP
rs556997876 347 dbSNP
rs914262734 348 dbSNP
rs947263369 355 dbSNP
rs1021100386 359 dbSNP
rs575379918 362 dbSNP
rs1337059771 365 dbSNP
rs1291709001 370 dbSNP
rs1465219424 376 dbSNP
rs1178996084 381 dbSNP
rs200025677 383 dbSNP
rs1171825683 385 dbSNP
rs924402400 390 dbSNP
rs998416180 391 dbSNP
rs1387364444 396 dbSNP
rs1325776782 402 dbSNP
rs536359641 403 dbSNP
rs1243526457 405 dbSNP
rs1183285442 406 dbSNP
rs953943312 407 dbSNP
rs556344988 410 dbSNP
rs1482360028 413 dbSNP
rs896605445 414 dbSNP
rs1205241666 415 dbSNP
rs1306966330 416 dbSNP
rs1016952839 418 dbSNP
rs1273155702 422 dbSNP
rs770898280 424 dbSNP
rs1045020258 428 dbSNP
rs1265314783 436 dbSNP
rs574153479 444 dbSNP
rs1395097439 451 dbSNP
rs1355048014 452 dbSNP
rs541305485 467 dbSNP
rs1442364298 468 dbSNP
rs146383820 471 dbSNP
rs577922615 479 dbSNP
rs569562124 483 dbSNP
rs981566817 484 dbSNP
rs1456210407 487 dbSNP
rs879407203 488 dbSNP
rs927588578 493 dbSNP
rs937603528 494 dbSNP
rs1177963173 497 dbSNP
rs1249695111 498 dbSNP
rs1177596062 503 dbSNP
rs1225384592 506 dbSNP
rs1360712756 512 dbSNP
rs1243007605 514 dbSNP
rs1319084106 516 dbSNP
rs1019359901 517 dbSNP
rs963766936 519 dbSNP
rs114288088 528 dbSNP
rs893491636 531 dbSNP
rs530846062 547 dbSNP
rs946357019 553 dbSNP
rs1042170732 555 dbSNP
rs369502881 565 dbSNP
rs549435948 568 dbSNP
rs902255331 582 dbSNP
rs1456231721 589 dbSNP
rs72843154 593 dbSNP
rs748175441 600 dbSNP
rs1050920843 606 dbSNP
rs528278081 607 dbSNP
rs1409852789 615 dbSNP
rs1201637353 623 dbSNP
rs1490663285 630 dbSNP
rs1267327418 633 dbSNP
rs1208546268 637 dbSNP
rs1487095353 641 dbSNP
rs1458504568 648 dbSNP
rs889588077 653 dbSNP
rs546825792 654 dbSNP
rs1216085574 655 dbSNP
rs571518948 656 dbSNP
rs538953769 669 dbSNP
rs1224867912 675 dbSNP
rs540740964 682 dbSNP
rs748413933 682 dbSNP
rs1016834721 688 dbSNP
rs1045161717 692 dbSNP
rs1289162781 693 dbSNP
rs1379589949 696 dbSNP
rs1456945049 698 dbSNP
rs72843155 702 dbSNP
rs1312670684 706 dbSNP
rs1377139709 706 dbSNP
rs931369562 706 dbSNP
rs1430757362 707 dbSNP
rs1262876396 711 dbSNP
rs568818109 712 dbSNP
rs1463805429 714 dbSNP
rs887386443 715 dbSNP
rs1265894022 717 dbSNP
rs1008503394 718 dbSNP
rs1345183287 719 dbSNP
rs1019766318 722 dbSNP
rs1230979738 727 dbSNP
rs900010180 730 dbSNP
rs1434161069 734 dbSNP
rs1362731688 739 dbSNP
rs535895760 741 dbSNP
rs996558190 742 dbSNP
rs1197691503 744 dbSNP
rs774954138 744 dbSNP
rs1170827993 746 dbSNP
rs1464009188 749 dbSNP
rs1258242224 753 dbSNP
rs554642374 759 dbSNP
rs981452244 762 dbSNP
rs572862303 763 dbSNP
rs1245339730 765 dbSNP
rs1255416171 768 dbSNP
rs1424378358 779 dbSNP
rs535176095 783 dbSNP
rs958842209 787 dbSNP
rs990385158 789 dbSNP
rs1465116052 790 dbSNP
rs914796047 793 dbSNP
rs183802124 794 dbSNP
rs1402673909 795 dbSNP
rs1227570130 797 dbSNP
rs1464875288 798 dbSNP
rs1316826542 800 dbSNP
rs1302679583 803 dbSNP
rs1332526916 804 dbSNP
rs1042447742 805 dbSNP
rs1332406113 805 dbSNP
rs1393252564 809 dbSNP
rs1397290713 810 dbSNP
rs1164561617 815 dbSNP
rs188019964 815 dbSNP
rs933741598 818 dbSNP
rs867289113 820 dbSNP
rs1050801360 821 dbSNP
rs1439115528 821 dbSNP
rs200354099 821 dbSNP
rs1204370969 823 dbSNP
rs1481996642 825 dbSNP
rs889640295 826 dbSNP
rs1006707419 827 dbSNP
rs1355336291 827 dbSNP
rs201050610 827 dbSNP
rs577883103 828 dbSNP
rs200777360 829 dbSNP
rs1276846970 831 dbSNP
rs1337798403 832 dbSNP
rs1367949696 832 dbSNP
rs1405182838 833 dbSNP
rs1412074171 833 dbSNP
rs199648022 833 dbSNP
rs200321064 833 dbSNP
rs879834498 833 dbSNP
rs1470928483 835 dbSNP
rs1217418643 836 dbSNP
rs1412075244 837 dbSNP
rs1491151064 837 dbSNP
rs1491335268 838 dbSNP
rs3890093 839 dbSNP
rs1308846102 840 dbSNP
rs1287394783 841 dbSNP
rs563668593 841 dbSNP
rs1207123249 842 dbSNP
rs1287833608 843 dbSNP
rs1330039915 843 dbSNP
rs1226704789 844 dbSNP
rs1255234898 844 dbSNP
rs1436374912 845 dbSNP
rs376142940 845 dbSNP
rs1348516213 846 dbSNP
rs1483447174 846 dbSNP
rs1212951898 848 dbSNP
rs1260853740 849 dbSNP
rs1320619586 849 dbSNP
rs1458519978 850 dbSNP
rs1477553732 850 dbSNP
rs370193337 851 dbSNP
rs1194412111 852 dbSNP
rs1425837426 853 dbSNP
rs1157933335 854 dbSNP
rs1430766248 855 dbSNP
rs1455245580 855 dbSNP
rs1491108710 855 dbSNP
rs1491529564 856 dbSNP
rs566733412 857 dbSNP
rs1431697907 861 dbSNP
rs1887005 863 dbSNP
rs1325828462 864 dbSNP
rs1175618267 867 dbSNP
rs1272316475 869 dbSNP
rs1437447856 869 dbSNP
rs376380105 869 dbSNP
rs71032597 869 dbSNP
rs1491494292 873 dbSNP
rs1319537929 874 dbSNP
rs1364913484 874 dbSNP
rs1491539746 874 dbSNP
rs145402415 875 dbSNP
rs879181914 875 dbSNP
rs1360170836 877 dbSNP
rs1169544087 879 dbSNP
rs1467852690 879 dbSNP
rs765652512 880 dbSNP
rs61873029 881 dbSNP
rs753015891 882 dbSNP
rs1462772800 883 dbSNP
rs1360407477 884 dbSNP
rs1398874311 885 dbSNP
rs1298332598 886 dbSNP
rs1275774892 887 dbSNP
rs374476869 887 dbSNP
rs879055465 887 dbSNP
rs1363415203 891 dbSNP
rs1295769805 893 dbSNP
rs61873030 893 dbSNP
rs1432484029 895 dbSNP
rs1380825195 897 dbSNP
rs368529806 897 dbSNP
rs1217186885 898 dbSNP
rs1309841322 899 dbSNP
rs1356925366 899 dbSNP
rs61873031 899 dbSNP
rs1300094761 900 dbSNP
rs1312561091 901 dbSNP
rs1236170811 902 dbSNP
rs1166444245 903 dbSNP
rs1430265239 903 dbSNP
rs1414864523 905 dbSNP
rs61873032 905 dbSNP
rs1181469831 906 dbSNP
rs1482348778 907 dbSNP
rs1283824412 909 dbSNP
rs1272960869 911 dbSNP
rs1482990596 911 dbSNP
rs4440944 911 dbSNP
rs1487948683 913 dbSNP
rs1217204510 914 dbSNP
rs1248687348 915 dbSNP
rs113783779 917 dbSNP
rs1227370993 920 dbSNP
rs1376359833 921 dbSNP
rs867777829 923 dbSNP
rs1243980454 925 dbSNP
rs1487541262 926 dbSNP
rs1306085024 927 dbSNP
rs1491118742 927 dbSNP
rs1491413487 928 dbSNP
rs1157467823 929 dbSNP
rs1182925328 929 dbSNP
rs1350251800 929 dbSNP
rs1414318915 929 dbSNP
rs1422209594 929 dbSNP
rs1472291717 930 dbSNP
rs1455881208 931 dbSNP
rs1225360702 932 dbSNP
rs1157182237 933 dbSNP
rs1380053523 934 dbSNP
rs1228525237 935 dbSNP
rs1289707974 935 dbSNP
rs1319511466 935 dbSNP
rs1380380156 935 dbSNP
rs1349308143 937 dbSNP
rs1420879188 937 dbSNP
rs575591632 938 dbSNP
rs1292687936 939 dbSNP
rs1388383728 939 dbSNP
rs1456601179 939 dbSNP
rs1391170140 941 dbSNP
rs1456839643 941 dbSNP
rs1201665483 943 dbSNP
rs1409831643 943 dbSNP
rs1189796538 945 dbSNP
rs1434194960 945 dbSNP
rs1300581536 947 dbSNP
rs1466515439 947 dbSNP
rs1346469539 949 dbSNP
rs542695635 950 dbSNP
rs1208964411 951 dbSNP
rs561391683 953 dbSNP
rs1235362710 954 dbSNP
rs1331558491 955 dbSNP
rs1367085667 955 dbSNP
rs1491068770 955 dbSNP
rs5788867 955 dbSNP
rs750871230 955 dbSNP
rs1174351569 956 dbSNP
rs1321536404 956 dbSNP
rs1386551909 956 dbSNP
rs1434571912 956 dbSNP
rs1451799506 957 dbSNP
rs910644396 957 dbSNP
rs1188805755 958 dbSNP
rs1292615273 958 dbSNP
rs1367807339 959 dbSNP
rs1464127593 962 dbSNP
rs1259078732 963 dbSNP
rs1255407644 968 dbSNP
rs1227983406 969 dbSNP
rs1336378489 969 dbSNP
rs1344057692 969 dbSNP
rs1363231340 969 dbSNP
rs1396720038 969 dbSNP
rs193052956 969 dbSNP
rs528580720 970 dbSNP
rs1301669966 971 dbSNP
rs1306855144 972 dbSNP
rs1391198960 972 dbSNP
rs1168296192 973 dbSNP
rs1442550489 973 dbSNP
rs200302371 973 dbSNP
rs1040360533 974 dbSNP
rs1254793383 975 dbSNP
rs376075441 975 dbSNP
rs1240853730 976 dbSNP
rs1286194569 977 dbSNP
rs201779782 979 dbSNP
rs1286245178 980 dbSNP
rs1245783832 981 dbSNP
rs766905395 981 dbSNP
rs868198812 982 dbSNP
rs1310610111 983 dbSNP
rs1220883994 984 dbSNP
rs1164649884 985 dbSNP
rs1371765253 985 dbSNP
rs1393308656 985 dbSNP
rs1412244339 985 dbSNP
rs915708139 986 dbSNP
rs1247537559 987 dbSNP
rs1367414622 987 dbSNP
rs1204347924 988 dbSNP
rs1355841917 989 dbSNP
rs1435925413 989 dbSNP
rs999092413 989 dbSNP
rs1271477903 990 dbSNP
rs1055127659 991 dbSNP
rs1230365681 991 dbSNP
rs1440563252 992 dbSNP
rs1324564013 993 dbSNP
rs1333206121 993 dbSNP
rs1470033737 995 dbSNP
rs546788827 995 dbSNP
rs1162318089 997 dbSNP
rs1176970626 998 dbSNP
rs1181365773 999 dbSNP
rs1412056025 999 dbSNP
rs1199361770 1000 dbSNP
rs1248280818 1000 dbSNP
rs1238024939 1001 dbSNP
rs138643365 1001 dbSNP
rs1440686708 1003 dbSNP
rs1167953776 1004 dbSNP
rs1267522153 1004 dbSNP
rs1275929224 1004 dbSNP
rs138033006 1004 dbSNP
rs142934583 1004 dbSNP
rs1436266357 1005 dbSNP
rs1369218220 1006 dbSNP
rs1160803340 1007 dbSNP
rs1323556178 1007 dbSNP
rs1412209722 1009 dbSNP
rs139969455 1010 dbSNP
rs1163518068 1011 dbSNP
rs1398427176 1011 dbSNP
rs1427249582 1011 dbSNP
rs1173080184 1012 dbSNP
rs1394531393 1012 dbSNP
rs1190772093 1013 dbSNP
rs1465475558 1013 dbSNP
rs5788868 1013 dbSNP
rs1462748193 1014 dbSNP
rs1328850778 1015 dbSNP
rs565089388 1016 dbSNP
rs1219151659 1017 dbSNP
rs1346170687 1017 dbSNP
rs1300197628 1018 dbSNP
rs11018291 1019 dbSNP
rs1230184990 1019 dbSNP
rs1287905168 1019 dbSNP
rs1428115981 1020 dbSNP
rs1375900807 1021 dbSNP
rs868347400 1024 dbSNP
rs1473854090 1025 dbSNP
rs200596733 1025 dbSNP
rs60885751 1025 dbSNP
rs1238055597 1027 dbSNP
rs1210042529 1028 dbSNP
rs1281247684 1029 dbSNP
rs1341885290 1029 dbSNP
rs1484946724 1029 dbSNP
rs1294494522 1030 dbSNP
rs191265791 1030 dbSNP
rs1376829672 1031 dbSNP
rs1227653427 1032 dbSNP
rs1284227044 1034 dbSNP
rs1414127018 1035 dbSNP
rs11018292 1036 dbSNP
rs1430232229 1037 dbSNP
rs1353702137 1038 dbSNP
rs1425719616 1038 dbSNP
rs1414652323 1039 dbSNP
rs569101744 1040 dbSNP
rs56762017 1042 dbSNP
rs11018293 1043 dbSNP
rs201911546 1043 dbSNP
rs1249919711 1046 dbSNP
rs1323106469 1048 dbSNP
rs61178873 1048 dbSNP
rs1353006977 1049 dbSNP
rs61248142 1049 dbSNP
rs1290209158 1050 dbSNP
rs1257589501 1052 dbSNP
rs11018294 1054 dbSNP
rs1350720482 1054 dbSNP
rs1164466920 1055 dbSNP
rs866190036 1056 dbSNP
rs1458518119 1057 dbSNP
rs1160572330 1058 dbSNP
rs1414194261 1058 dbSNP
rs1418957141 1059 dbSNP
rs11018295 1060 dbSNP
rs1193324587 1060 dbSNP
rs1246982849 1061 dbSNP
rs58078601 1061 dbSNP
rs1212675626 1063 dbSNP
rs1332035448 1065 dbSNP
rs11018296 1066 dbSNP
rs1388344562 1067 dbSNP
rs1472779624 1067 dbSNP
rs201332753 1067 dbSNP
rs1368039883 1068 dbSNP
rs1182943863 1069 dbSNP
rs1325485167 1069 dbSNP
rs1418016507 1070 dbSNP
rs1159953805 1072 dbSNP
rs1453108577 1072 dbSNP
rs59602907 1072 dbSNP
rs11018297 1073 dbSNP
rs1462503846 1073 dbSNP
rs547881891 1074 dbSNP
rs566537359 1075 dbSNP
rs1410347804 1076 dbSNP
rs1330704861 1077 dbSNP
rs1192632604 1078 dbSNP
rs1466821708 1078 dbSNP
rs56699365 1078 dbSNP
rs1205243805 1079 dbSNP
rs61020887 1079 dbSNP
rs1485244524 1080 dbSNP
rs1258963985 1081 dbSNP
rs1312573150 1083 dbSNP
rs11018298 1084 dbSNP
rs1381781848 1084 dbSNP
rs1491299927 1084 dbSNP
rs1305116658 1085 dbSNP
rs1491454170 1085 dbSNP
rs1466949840 1086 dbSNP
rs1414047527 1087 dbSNP
rs1391679672 1088 dbSNP
rs1193434804 1089 dbSNP
rs11018299 1090 dbSNP
rs200411159 1091 dbSNP
rs1279486153 1093 dbSNP
rs1485935975 1093 dbSNP
rs1208523914 1095 dbSNP
rs11018300 1096 dbSNP
rs1226887043 1096 dbSNP
rs1314878976 1096 dbSNP
rs1324774182 1096 dbSNP
rs1344023426 1096 dbSNP
rs1357182701 1099 dbSNP
rs1355425161 1100 dbSNP
rs1447291113 1101 dbSNP
rs1432073764 1102 dbSNP
rs58745852 1102 dbSNP
rs879291655 1102 dbSNP
rs1284694417 1103 dbSNP
rs769155531 1103 dbSNP
rs1370879398 1104 dbSNP
rs1461131241 1104 dbSNP
rs1491488724 1104 dbSNP
rs11018301 1105 dbSNP
rs1185706848 1105 dbSNP
rs1256792668 1105 dbSNP
rs1402163588 1105 dbSNP
rs1483915679 1105 dbSNP
rs1357461488 1106 dbSNP
rs1216831605 1107 dbSNP
rs1241068884 1108 dbSNP
rs1293679893 1108 dbSNP
rs1354883405 1108 dbSNP
rs1277829151 1109 dbSNP
rs1412162210 1110 dbSNP
rs1318930477 1111 dbSNP
rs1295203975 1112 dbSNP
rs1328557722 1112 dbSNP
rs1393945179 1112 dbSNP
rs1164625441 1113 dbSNP
rs1197742568 1113 dbSNP
rs11018302 1114 dbSNP
rs1162720441 1114 dbSNP
rs1180868498 1114 dbSNP
rs1233273793 1114 dbSNP
rs1308282352 1114 dbSNP
rs1277028023 1115 dbSNP
rs1435841378 1116 dbSNP
rs1442191356 1116 dbSNP
rs1211448917 1118 dbSNP
rs11018303 1120 dbSNP
rs1230810256 1120 dbSNP
rs1352091878 1120 dbSNP
rs796971307 1120 dbSNP
rs1260150293 1124 dbSNP
rs1279466600 1124 dbSNP
rs1237411696 1125 dbSNP
rs1333187357 1125 dbSNP
rs1458329558 1126 dbSNP
rs1491330777 1126 dbSNP
rs751770574 1126 dbSNP
rs867651731 1126 dbSNP
rs1491589347 1127 dbSNP
rs1190818788 1128 dbSNP
rs1408686337 1128 dbSNP
rs1468467246 1129 dbSNP
rs1379082862 1131 dbSNP
rs1422262077 1131 dbSNP
rs11018304 1132 dbSNP
rs1468174522 1132 dbSNP
rs1475561254 1133 dbSNP
rs1447643092 1134 dbSNP
rs1169281975 1136 dbSNP
rs1222499624 1137 dbSNP
rs1422872826 1137 dbSNP
rs11018305 1138 dbSNP
rs1234609991 1138 dbSNP
rs1300773532 1138 dbSNP
rs1432349997 1138 dbSNP
rs113553345 1140 dbSNP
rs1313440494 1141 dbSNP
rs1317561603 1141 dbSNP
rs1398833549 1142 dbSNP
rs199669292 1142 dbSNP
rs1377144332 1143 dbSNP
rs1393565740 1144 dbSNP
rs1404127574 1144 dbSNP
rs1453554489 1144 dbSNP
rs1190749001 1145 dbSNP
rs1475786581 1146 dbSNP
rs1214302331 1147 dbSNP
rs1241534063 1147 dbSNP
rs1277826702 1148 dbSNP
rs1444593164 1148 dbSNP
rs1269041820 1149 dbSNP
rs1428006261 1149 dbSNP
rs71032599 1149 dbSNP
rs1313398863 1150 dbSNP
rs1357347634 1150 dbSNP
rs1433940202 1151 dbSNP
rs1172825930 1153 dbSNP
rs1373323985 1153 dbSNP
rs1184898672 1155 dbSNP
rs1278237255 1155 dbSNP
rs1456123834 1155 dbSNP
rs1258893703 1156 dbSNP
rs558265147 1158 dbSNP
rs1187851656 1159 dbSNP
rs571486117 1160 dbSNP
rs1206223886 1161 dbSNP
rs201094411 1161 dbSNP
rs866641565 1161 dbSNP
rs1398043347 1162 dbSNP
rs1336299537 1163 dbSNP
rs1297702048 1165 dbSNP
rs1353355208 1165 dbSNP
rs200782289 1165 dbSNP
rs11524783 1167 dbSNP
rs1354215799 1168 dbSNP
rs1168583912 1169 dbSNP
rs1463137530 1169 dbSNP
rs1229960365 1170 dbSNP
rs1164848178 1171 dbSNP
rs1418578145 1171 dbSNP
rs1253252467 1173 dbSNP
rs1178191748 1174 dbSNP
rs1273237440 1175 dbSNP
rs1480505806 1175 dbSNP
rs1232022762 1177 dbSNP
rs1469430962 1177 dbSNP
rs1273216568 1178 dbSNP
rs1344752611 1179 dbSNP
rs1177657507 1180 dbSNP
rs1296669612 1180 dbSNP
rs1372335208 1180 dbSNP
rs139205746 1180 dbSNP
rs1443301746 1180 dbSNP
rs57840951 1180 dbSNP
rs773595692 1180 dbSNP
rs1491063408 1181 dbSNP
rs767007926 1182 dbSNP
rs11018306 1183 dbSNP
rs1366121229 1183 dbSNP
rs796123839 1183 dbSNP
rs1176420698 1184 dbSNP
rs1418868129 1184 dbSNP
rs1212154097 1185 dbSNP
rs868617859 1185 dbSNP
rs1212574991 1187 dbSNP
rs1253203439 1187 dbSNP
rs11018307 1189 dbSNP
rs1474669803 1189 dbSNP
rs1220141486 1191 dbSNP
rs61315231 1193 dbSNP
rs117713511 1195 dbSNP
rs1316130789 1197 dbSNP
rs1487624218 1198 dbSNP
rs1216487065 1199 dbSNP
rs1302938895 1201 dbSNP
rs1387151156 1201 dbSNP
rs201653726 1201 dbSNP
rs1261925470 1203 dbSNP
rs1289982189 1203 dbSNP
rs1453616836 1203 dbSNP
rs1447067389 1204 dbSNP
rs796705779 1204 dbSNP
rs1194898267 1205 dbSNP
rs1244554334 1206 dbSNP
rs1395364771 1207 dbSNP
rs1477587071 1207 dbSNP
rs568734713 1207 dbSNP
rs12413422 1208 dbSNP
rs1283773726 1209 dbSNP
rs1418411780 1209 dbSNP
rs1485479028 1209 dbSNP
rs796809826 1209 dbSNP
rs557221871 1211 dbSNP
rs1417856548 1212 dbSNP
rs575855306 1213 dbSNP
rs1328300754 1214 dbSNP
rs1157957970 1215 dbSNP
rs1360547226 1219 dbSNP
rs1491419915 1219 dbSNP
rs1491465450 1220 dbSNP
rs1169968566 1221 dbSNP
rs796538754 1221 dbSNP
rs1375149879 1223 dbSNP
rs1172636343 1224 dbSNP
rs1464184125 1225 dbSNP
rs11594501 1227 dbSNP
rs1427398342 1230 dbSNP
rs1261031017 1231 dbSNP
rs1330698086 1233 dbSNP
rs1485886789 1234 dbSNP
rs1441892010 1235 dbSNP
rs1256482880 1237 dbSNP
rs1198981106 1238 dbSNP
rs1306141337 1238 dbSNP
rs1226861532 1239 dbSNP
rs1313463905 1239 dbSNP
rs80149489 1239 dbSNP
rs1351959069 1240 dbSNP
rs1240136867 1241 dbSNP
rs772352372 1241 dbSNP
rs1295660757 1243 dbSNP
rs1491237612 1243 dbSNP
rs1355245222 1244 dbSNP
rs1491346385 1244 dbSNP
rs4992328 1245 dbSNP
rs1398260494 1250 dbSNP
rs1168134324 1251 dbSNP
rs1420766445 1253 dbSNP
rs1461051575 1253 dbSNP
rs1428445542 1257 dbSNP
rs1475471877 1257 dbSNP
rs542960995 1257 dbSNP
rs1185207691 1260 dbSNP
rs1439323816 1261 dbSNP
rs1206333977 1262 dbSNP
rs554687696 1263 dbSNP
rs573252334 1265 dbSNP
rs74399298 1266 dbSNP
rs540712560 1268 dbSNP
rs971394052 1274 dbSNP
rs948557166 1276 dbSNP
rs1193872552 1277 dbSNP
rs1334806559 1282 dbSNP
rs188581724 1283 dbSNP
rs1329149103 1292 dbSNP
rs1437525400 1292 dbSNP
rs1390418576 1295 dbSNP
rs981260962 1303 dbSNP
rs75488244 1307 dbSNP
rs1364265359 1309 dbSNP
rs1393720591 1313 dbSNP
rs1455435233 1314 dbSNP
rs1471041718 1317 dbSNP
rs1364101128 1318 dbSNP
rs568280171 1319 dbSNP
rs990271813 1321 dbSNP
rs914870786 1322 dbSNP
rs968039081 1326 dbSNP
rs1214449635 1329 dbSNP
rs1047080282 1330 dbSNP
rs977669662 1333 dbSNP
rs1462228696 1334 dbSNP
rs1328157150 1342 dbSNP
rs1351877395 1344 dbSNP
rs1279300826 1346 dbSNP
rs1375165610 1348 dbSNP
rs1238395194 1355 dbSNP
rs923614000 1359 dbSNP
rs1441087640 1360 dbSNP
rs1308377057 1361 dbSNP
rs770321939 1364 dbSNP
rs1321518460 1372 dbSNP
rs944239005 1373 dbSNP
rs933619760 1380 dbSNP
rs879031787 1390 dbSNP
rs986569727 1392 dbSNP
rs145206244 1396 dbSNP
rs997060800 1403 dbSNP
rs1397178649 1404 dbSNP
rs942543578 1413 dbSNP
rs1194432977 1422 dbSNP
rs1038608542 1431 dbSNP
rs1195994659 1431 dbSNP
rs1448124634 1432 dbSNP
rs1284159709 1434 dbSNP
rs904297656 1435 dbSNP
rs1282023640 1437 dbSNP
rs898288039 1440 dbSNP
rs1366311958 1445 dbSNP
rs1272532206 1452 dbSNP
rs1333506434 1461 dbSNP
rs959705009 1466 dbSNP
rs1014084528 1467 dbSNP
rs1022876250 1475 dbSNP
rs929889482 1484 dbSNP
rs1046952241 1485 dbSNP
rs149128927 1493 dbSNP
rs1423295663 1495 dbSNP
rs1169779692 1496 dbSNP
rs973288033 1501 dbSNP
rs1456298262 1503 dbSNP
rs1192043472 1504 dbSNP
rs919985866 1505 dbSNP
rs1258592947 1507 dbSNP
rs1002816203 1508 dbSNP
rs1197722372 1512 dbSNP
rs548137701 1519 dbSNP
rs867780971 1520 dbSNP
rs145059622 1526 dbSNP
rs1277506928 1536 dbSNP
rs1398019186 1539 dbSNP
rs1357169943 1542 dbSNP
rs1185329726 1546 dbSNP
rs944059335 1547 dbSNP
rs1011580099 1548 dbSNP
rs1475543535 1549 dbSNP
rs201654102 1551 dbSNP
rs1022220239 1552 dbSNP
rs113088444 1552 dbSNP
rs755701600 1552 dbSNP
rs763670415 1552 dbSNP
rs878905329 1552 dbSNP
rs1398329863 1553 dbSNP
rs1482472864 1557 dbSNP
rs967541487 1558 dbSNP
rs544982830 1559 dbSNP
rs1256825445 1560 dbSNP
rs1216220540 1566 dbSNP
rs1030561142 1569 dbSNP
rs1336925004 1570 dbSNP
rs1293821029 1573 dbSNP
rs932795462 1579 dbSNP
rs1376617058 1581 dbSNP
rs1043209009 1583 dbSNP
rs1394859819 1583 dbSNP
rs1312558923 1584 dbSNP
rs1443137525 1584 dbSNP
rs1354271153 1585 dbSNP
rs904700983 1589 dbSNP
rs12571121 1597 dbSNP
rs1329436237 1599 dbSNP
rs1294768224 1603 dbSNP
rs1044530118 1607 dbSNP
rs1283136048 1607 dbSNP
rs1315735174 1609 dbSNP
rs1203342865 1612 dbSNP
rs907404336 1613 dbSNP
rs1251745560 1614 dbSNP
rs1003272765 1617 dbSNP
rs998579059 1620 dbSNP
rs1035195959 1621 dbSNP
rs1178609934 1621 dbSNP
rs1052803597 1622 dbSNP
rs1196279248 1623 dbSNP
rs116666968 1624 dbSNP
rs1273747395 1627 dbSNP
rs1013909653 1634 dbSNP
rs1220667930 1638 dbSNP
rs955051711 1644 dbSNP
rs1256635661 1651 dbSNP
rs1224095966 1652 dbSNP
rs1376497106 1656 dbSNP
rs1486058700 1665 dbSNP
rs986456775 1666 dbSNP
rs897457279 1684 dbSNP
rs1190097118 1690 dbSNP
rs1307332139 1691 dbSNP
rs1443282280 1693 dbSNP
rs71474223 1694 dbSNP
rs1421532974 1705 dbSNP
rs1293483654 1707 dbSNP
rs1477655389 1708 dbSNP
rs1171379961 1709 dbSNP
rs1022823983 1711 dbSNP
rs1347432681 1714 dbSNP
rs570253672 1721 dbSNP
rs911013888 1723 dbSNP
rs970022561 1725 dbSNP
rs372285990 1730 dbSNP
rs538806167 1734 dbSNP
rs1176330007 1736 dbSNP
rs1455205737 1743 dbSNP
rs1464796645 1750 dbSNP
rs560439805 1751 dbSNP
rs1267375905 1764 dbSNP
rs942427415 1769 dbSNP
rs1487485586 1771 dbSNP
rs1262395079 1782 dbSNP
rs973814604 1784 dbSNP
rs919773181 1785 dbSNP
rs1284151984 1792 dbSNP
rs950610808 1798 dbSNP
rs557274144 1807 dbSNP
rs1385132046 1808 dbSNP
rs1364772818 1809 dbSNP
rs1289966109 1811 dbSNP
rs929808098 1812 dbSNP
rs1314220111 1818 dbSNP
rs1047452043 1821 dbSNP
rs907122614 1824 dbSNP
rs1399789806 1828 dbSNP
rs142402926 1828 dbSNP
rs908661881 1828 dbSNP
rs982884476 1828 dbSNP
rs1337772202 1829 dbSNP
rs572290866 1830 dbSNP
rs1295774985 1831 dbSNP
rs1309045122 1832 dbSNP
rs1230742649 1833 dbSNP
rs1212715758 1842 dbSNP
rs1260717807 1842 dbSNP
rs1055727021 1844 dbSNP
rs1279551146 1844 dbSNP
rs894449569 1846 dbSNP
rs1348550816 1851 dbSNP
rs965360994 1852 dbSNP
rs1233884261 1853 dbSNP
rs1012090271 1854 dbSNP
rs1021686831 1855 dbSNP
rs1338940779 1858 dbSNP
rs921286791 1860 dbSNP
rs1402538440 1861 dbSNP
rs1415752325 1861 dbSNP
rs1301891861 1865 dbSNP
rs1464108682 1884 dbSNP
rs138841367 1887 dbSNP
rs999018790 1893 dbSNP
rs1043707519 1898 dbSNP
rs1485551125 1900 dbSNP
rs1477478805 1916 dbSNP
rs1187331466 1921 dbSNP
rs11428259 1931 dbSNP
rs397687500 1931 dbSNP
rs200610506 1935 dbSNP
rs1442786146 1937 dbSNP
rs926101781 1939 dbSNP
rs536559951 1942 dbSNP
rs1398841471 1944 dbSNP
rs1481673053 1953 dbSNP
rs1052794444 1954 dbSNP
rs1198051469 1959 dbSNP
rs1316646472 1967 dbSNP
rs555275132 1972 dbSNP
rs1340175196 1981 dbSNP
rs1311587766 1997 dbSNP
rs895597494 1998 dbSNP
rs954938267 1999 dbSNP
rs986340958 2000 dbSNP
rs140605628 2009 dbSNP
rs1157374332 2012 dbSNP
rs963679531 2016 dbSNP
rs1028024927 2018 dbSNP
rs1367629433 2019 dbSNP
rs1185732103 2020 dbSNP
rs1429334355 2023 dbSNP
rs779703677 2025 dbSNP
rs1421147170 2040 dbSNP
rs1238995547 2042 dbSNP
rs886267343 2043 dbSNP
rs1004749216 2045 dbSNP
rs1384695353 2047 dbSNP
rs974253540 2049 dbSNP
rs1302491669 2054 dbSNP
rs919672690 2060 dbSNP
rs74159083 2067 dbSNP
rs577420799 2068 dbSNP
rs928433502 2069 dbSNP
rs145832367 2071 dbSNP
rs1309526005 2082 dbSNP
rs1445411354 2087 dbSNP
rs562559567 2088 dbSNP
rs1028287997 2097 dbSNP
rs1327875711 2104 dbSNP
rs954185584 2109 dbSNP
rs1055610424 2110 dbSNP
rs1455136695 2110 dbSNP
rs529936611 2118 dbSNP
rs926230207 2119 dbSNP
rs1262543761 2121 dbSNP
rs947388213 2126 dbSNP
rs1437918123 2131 dbSNP
rs1254912573 2139 dbSNP
rs934832334 2142 dbSNP
rs1451588464 2145 dbSNP
rs1043562235 2155 dbSNP
rs1207334341 2158 dbSNP
rs1193241288 2160 dbSNP
rs72843157 2165 dbSNP
rs1286307122 2172 dbSNP
rs1455815769 2180 dbSNP
rs1350911729 2183 dbSNP
rs999468039 2191 dbSNP
rs1177320013 2200 dbSNP
rs1044128604 2201 dbSNP
rs1051935485 2212 dbSNP
rs1401619933 2214 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084044. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep3 HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb HITS-CLIP data was present in GSM1084069. RNA binding protein: AGO2. Condition:CLIP_emetine_SigmaAb HITS-CLIP data was present in GSM1084072. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep1_AbnovaAb HITS-CLIP data was present in GSM1084073. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep1_AbnovaAb HITS-CLIP data was present in GSM1084076. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep1_SigmaAb HITS-CLIP data was present in GSM1084077. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep1_SigmaAb HITS-CLIP data was present in GSM1084078. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_AbnovaAb HITS-CLIP data was present in GSM1084079. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_AbnovaAb HITS-CLIP data was present in GSM1084081. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_SantaCruzAb HITS-CLIP data was present in GSM1084083. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_SigmaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084044
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep3
Location of target site ENST00000388920.4 | 3UTR | AGAGUGAGGUGUGUGUGUGUGUGUGCGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000388920.4 | 3UTR | UGAAGAGUGAGGUGUGUGUGUGUGUGUGCGUGUGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000388920.4 | 3UTR | UGAAGAGUGAGGUGUGUGUGUGUGUGUGCGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1084069
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_SigmaAb
Location of target site ENST00000388920.4 | 3UTR | AAGAGUGAGGUGUGUGUGUGUGUGUGCGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM1084072
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep1_AbnovaAb
Location of target site ENST00000388920.4 | 3UTR | AAGAGUGAGGUGUGUGUGUGUGUGUGCGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM1084073
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep1_AbnovaAb
Location of target site ENST00000388920.4 | 3UTR | CUGAAGAGUGAGGUGUGUGUGUGUGUGUGCGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM1084076
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep1_SigmaAb
Location of target site ENST00000388920.4 | 3UTR | AAGAGUGAGGUGUGUGUGUGUGUGUGCGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM1084077
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep1_SigmaAb
Location of target site ENST00000388920.4 | 3UTR | UGAAGAGUGAGGUGUGUGUGUGUGUGUGCGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 9 for dataset GSM1084078
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep2_AbnovaAb
Location of target site ENST00000388920.4 | 3UTR | UGAAGAGUGAGGUGUGUGUGUGUGUGUGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 10 for dataset GSM1084079
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_AbnovaAb
Location of target site ENST00000388920.4 | 3UTR | UGAAGAGUGAGGUGUGUGUGUGUGUGUGCGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 11 for dataset GSM1084081
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_SantaCruzAb
Location of target site ENST00000388920.4 | 3UTR | UGAAGAGUGAGGUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 12 for dataset GSM1084083
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_SigmaAb
Location of target site ENST00000388920.4 | 3UTR | UGAAGAGUGAGGUGUGUGUGUGUGUGUGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
82 hsa-miR-4291 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT102445 CALU calumenin 2 4
MIRT108677 ZBTB33 zinc finger and BTB domain containing 33 2 4
MIRT125969 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 6
MIRT179018 PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 2 4
MIRT379033 CDK6 cyclin dependent kinase 6 2 6
MIRT442473 CPEB4 cytoplasmic polyadenylation element binding protein 4 2 2
MIRT442910 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT442979 ZNF736 zinc finger protein 736 2 2
MIRT445663 TNFSF15 TNF superfamily member 15 2 2
MIRT446237 FZD6 frizzled class receptor 6 2 2
MIRT448860 FAM49B family with sequence similarity 49 member B 2 2
MIRT455559 TRAF1 TNF receptor associated factor 1 2 2
MIRT459704 ZNF641 zinc finger protein 641 2 2
MIRT460608 FEM1A fem-1 homolog A 2 2
MIRT462251 LAMA4 laminin subunit alpha 4 2 2
MIRT462469 FIZ1 FLT3 interacting zinc finger 1 2 2
MIRT466656 TAF1D TATA-box binding protein associated factor, RNA polymerase I subunit D 2 6
MIRT466841 STX6 syntaxin 6 2 2
MIRT471403 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT471517 PCGF3 polycomb group ring finger 3 2 2
MIRT471681 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT472858 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT474813 KIAA0226 RUN and cysteine rich domain containing beclin 1 interacting protein 2 2
MIRT474931 KCTD15 potassium channel tetramerization domain containing 15 2 2
MIRT475814 HDGF heparin binding growth factor 2 2
MIRT480434 C17orf49 chromosome 17 open reading frame 49 2 2
MIRT480903 BCL2L2-PABPN1 BCL2L2-PABPN1 readthrough 2 2
MIRT481478 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT484982 UBE2V1 ubiquitin conjugating enzyme E2 V1 2 8
MIRT485019 TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough 2 8
MIRT485036 TMEM189 transmembrane protein 189 2 8
MIRT495074 HEYL hes related family bHLH transcription factor with YRPW motif-like 2 2
MIRT496004 CD180 CD180 molecule 2 2
MIRT500675 TRIM37 tripartite motif containing 37 2 2
MIRT504544 ZNF417 zinc finger protein 417 2 6
MIRT506782 KLHL15 kelch like family member 15 2 6
MIRT507256 FGF2 fibroblast growth factor 2 2 6
MIRT507386 EN2 engrailed homeobox 2 2 2
MIRT512505 BTBD19 BTB domain containing 19 2 2
MIRT516903 CTSB cathepsin B 2 2
MIRT528124 PPP1R10 protein phosphatase 1 regulatory subunit 10 2 2
MIRT528874 ATF3 activating transcription factor 3 2 2
MIRT536091 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT541079 RLIM ring finger protein, LIM domain interacting 2 2
MIRT541099 RAF1 Raf-1 proto-oncogene, serine/threonine kinase 2 2
MIRT545360 LIN7C lin-7 homolog C, crumbs cell polarity complex component 2 2
MIRT545831 ZNF367 zinc finger protein 367 2 4
MIRT547115 PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 2 2
MIRT547312 NPTN neuroplastin 2 2
MIRT547959 HIGD1A HIG1 hypoxia inducible domain family member 1A 2 4
MIRT549943 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT550749 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT565145 TUBB2A tubulin beta 2A class IIa 2 2
MIRT571050 POLQ DNA polymerase theta 2 2
MIRT571361 ZNF45 zinc finger protein 45 2 2
MIRT610133 FOXI2 forkhead box I2 2 2
MIRT613145 DSE dermatan sulfate epimerase 2 2
MIRT613379 ABCC12 ATP binding cassette subfamily C member 12 2 2
MIRT615752 C6 complement C6 2 2
MIRT616460 ADRA2B adrenoceptor alpha 2B 2 2
MIRT616719 FEM1B fem-1 homolog B 2 2
MIRT618312 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT631491 RASSF4 Ras association domain family member 4 2 2
MIRT643134 PLCXD2 phosphatidylinositol specific phospholipase C X domain containing 2 2 2
MIRT643482 DISC1 disrupted in schizophrenia 1 2 2
MIRT649715 TWSG1 twisted gastrulation BMP signaling modulator 1 2 2
MIRT653542 SLC38A7 solute carrier family 38 member 7 2 2
MIRT666307 SLC22A3 solute carrier family 22 member 3 2 2
MIRT692005 NAP1L4 nucleosome assembly protein 1 like 4 2 2
MIRT696838 ARL2BP ADP ribosylation factor like GTPase 2 binding protein 2 2
MIRT698204 TMEM248 transmembrane protein 248 2 2
MIRT703316 GDPD5 glycerophosphodiester phosphodiesterase domain containing 5 2 2
MIRT709376 FAM13A family with sequence similarity 13 member A 2 2
MIRT710112 MED23 mediator complex subunit 23 2 2
MIRT711975 HOMER2 homer scaffolding protein 2 2 2
MIRT712275 PPIP5K2 diphosphoinositol pentakisphosphate kinase 2 2 2
MIRT714108 TMED9 transmembrane p24 trafficking protein 9 2 2
MIRT719113 MAML1 mastermind like transcriptional coactivator 1 2 2
MIRT719727 SLC39A11 solute carrier family 39 member 11 2 2
MIRT720018 TFAP2C transcription factor AP-2 gamma 2 2
MIRT720358 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT720372 NUDT3 nudix hydrolase 3 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4291 Platinum-based doublet chemotherapy resistant High Lung Adenocarcinoma tissue
hsa-miR-4291 Platinum 23939 resistant High Ovarian Cancer tissue
hsa-miR-4291 Paclitaxel 36314 NSC125973 approved resistant High Prostate Cancer cell line (DU-145, PC-3)
hsa-miR-4291 Doxorubicin 31703 NSC123127 approved resistant High Chronic Myelogenous Leukemia cell line (K562)
hsa-miR-4291 Radioactivity Iodine resistant High Papillary Thyroid Cancer tissue
hsa-miR-4291 Cisplatin 5460033 NSC119875 approved resistant High Hypopharyngeal Cancer cell line (FaDu)
hsa-miR-4291 Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-4291 Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-4291 Cisplatin 5460033 NSC119875 approved sensitive cell line (CAL-27) (cytosolic RNA)
hsa-miR-4291 Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-4291 Platinum-based doublet chemotherapy resistant tissue (lung adenocarcinoma)
hsa-miR-4291 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4291 Gemcitabine 60750 NSC613327 approved resistant cell line (Panc1-GR3)
hsa-miR-4291 Gemcitabine 60750 NSC613327 approved resistant cell line (Panc1-GR4)

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