pre-miRNA Information
pre-miRNA hsa-mir-4419b   
Genomic Coordinates chr12: 128244506 - 128244573
Description Homo sapiens miR-4419b stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4419b
Sequence 42| GAGGCUGAAGGAAGAUGG |59
Evidence Experimental
Experiments Illumina
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ARSA   
Synonyms MLD
Description arylsulfatase A
Transcript NM_000487   
Other Transcripts NM_001085425 , NM_001085426 , NM_001085427 , NM_001085428   
Expression
Putative miRNA Targets on ARSA
3'UTR of ARSA
(miRNA target sites are highlighted)
>ARSA|NM_000487|3'UTR
   1 GGGCCCCTCGGCTGGCCTGGGCATGTGATGGCTCCTCACTGGGAGCCTGTGGGGGAGGCTCAGGTGTCTGGAGGGGGTTT
  81 GTGCCTGATAACGTAATAACACCAGTGGAGACTTGCAGATGTGACAATTCGTCCAATCCTGGGGTAATGCTGTGTGCTGG
 161 TGCCGGTCCCCTGTGGTACGAATGAGGAAACTGAGGTGCAGAGAGGTTCAGGACTTGTACAAGATCACCCAGCCAGAAAG
 241 AGGTTGGGCTGGGATTTGAACCCTGGTGTCGTGGCTCTGGAAGCTGCCCTGGCGCCTTGGTGATCTGCGTGGGTCAGTGC
 321 ACACAGGCACACGTCAGCCTCAAGGACATGGGCACATCTGTTCACAGGAGCAGCGCCACGTGCCTTTGAGTGCCAGGAAC
 401 GGGGTGGGAGGGTGGGAGGGTGTGAGGGCCAGAAGACTCAGAAGATGCAAAGTGCCTGAGAGAGACGGGATATTCCCCCA
 481 GAAGAAGCATTCTTAGAGACACAGGCACTGGACCTCCTTGGTTCTTATAAGAAACCTGTCTGAAGCTGGGTGATGAGTTG
 561 CACACTCCAGGTGGGGCTAAGGGGCCTGGAGCCCCTGCTGGCTCCTAGGAAGGCACAGCAGCAGGCCCTGAGACGGCTCC
 641 TCTGGGGCCCCTCCACCCTCCCAGGCCTCTGCATTTCACCTGTGCCCACACTTCTGTCTCCTGCCTTCACCTTTTGACCC
 721 ACTACTAACGATTCTCCACCCAGCAGACAAAGTGATCTCTTAAAAATATCTGTTGGCTGGGCACGGTGGCTCACGCCTGT
 801 AATCCCAGCACTTTAGGAAGCCGAGGCGGGTGGATCACCTGAGGTCGGGAGTTCGAGACCAGCCTGACCAACATGGAGAA
 881 ACCCCATCTCTACTAAAAATACAAAATTAGCCAGGTGTAGTGGTGCATCCCTGTAATCCCAGCTACTTGGGAGTCTGAGG
 961 CTGGAGAATCACTTGAACCTGGGAGGCGGTGGTTGCAGTGAGCCGAGATCGCACCATTGCACTCCAGCCTGGGCAACAAG
1041 AGAAAAACTCTGTCTCAAAAAACAAAAAATCTGTTAGGCTGCACACGGCGATTCACTCCTGTATTCCCAGTGCTTTGGGA
1121 GGCTGAGGTGAGAGGATGCCTGAGGCCAGGAATTCAGACCAGCCTGGGCAACATAGTGAGACCCCAGCTCTAAAGATTTG
1201 TTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTAGAG
1281 TGCAGTGGTACCATCTCCGCTCACTGCAACCTCCGCCTCCCGGGTTCCAGGGATTCTCCTGCCTCAGCCTCCCTAGTAGC
1361 TGGAACTACAGGTGTGTGCTGCCATGCCCAGCTAATTTTTTTTTATTTAATAGAGACAAGATTTCACCATGTTGGCCAGG
1441 CTGGTCTCAAACTCCTGACCTCAGGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAACCACCAC
1521 ACCTGGCCAACAATATTTGTTTTAATTAGCCAGGCGTGGTAGCATTTGTCCTAGCAATTTGGGAGGTTGAGGTGGGAGAA
1601 TCACTTCAGCCCACTAGGTCGAGGCTGTAGTGAGCTATAATTGTACCACTGCACTCCAGCCTCGGGGACAGAGTGAGACC
1681 CTGTCTGCAAATAAACAAATAAAACATCAGGCTGGGCTTGAGCATCTATTCCTGCTCAAAATTTCGCAGGCTTCTCAGAA
1761 GAAAATCCAAACCCCTTACAGTGACCCAGTTTGCCCTTGAGGCCTCCACCCACACCCCCTTCCCCCCAGTCTTAGGGGGT
1841 GGCCTGGCTGTTCCCTTCAACGGCAACGCTCTGCCTCCATTGTTGGCCTCCTCTGCAGGGAGGGACTGTCTGAGCACCTG
1921 CCCGTGTCTGTGCAGCATGGCACACTGACGTCAGGCCCACGTGCATGCCCAGGTGGCCAGTCACACGCCAGGTGCTCCCT
2001 CAGTGTTGGCCAAGTGAGAGGAGCACACCTTCCGGGCGTTCAGACACCTCCCCGTGGCAGACACCGTTCGTTGCTACCAA
2081 ACAGCCACCTCCTTCCTAATGGGCTCCCATTTTTCAGTGCTGGGCAAAGGTCCCTTGATCTTGGAGTTGCAGCCTCTTTC
2161 TCTCCAAGGAGGGCGGTGACCAGCCTGAGCCAGTCAATCCAGTGATTGGTTCAGGAGTAGCCTGTGACCAGGAGTCCTGG
2241 TAGTGAACGACTGGGGCAGCCCTGGGGGTGAGGACCTTGCGCAGCCGTCACAGGCCCTGATTGGACACTGGGCAGCTGCT
2321 AACCCAGTGTCTCCAGCTGCCTACCTGGAGAGCTCCAAGCGTAAGAAAATAAACCCTGCCTGTTGAAGCCAAAAAAAAAA
2401 A
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ggUAGAAGGA---AGUCGGAg 5'
            ||: ||||   ||||||| 
Target 5' ggATTCTCCTGCCTCAGCCTc 3'
1331 - 1351 156.00 -17.50
2
miRNA  3' ggUAGAAG---GAAGUCGGAg 5'
            |||  |   | ||||||| 
Target 5' tgATCCACCCGCCTCAGCCTc 3'
1466 - 1486 144.00 -19.20
3
miRNA  3' gguagaagGAAGUCGGAg 5'
                  | ||||||| 
Target 5' caggcacaCGTCAGCCTc 3'
324 - 341 142.00 -13.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
900840 10 ClinVar
900839 15 ClinVar
1195892 73 ClinVar
3049 96 ClinVar
342233 103 ClinVar
342232 125 ClinVar
900838 127 ClinVar
342231 130 ClinVar
899695 165 ClinVar
342230 191 ClinVar
342229 293 ClinVar
342228 332 ClinVar
342227 340 ClinVar
342226 342 ClinVar
899694 380 ClinVar
903298 389 ClinVar
903297 413 ClinVar
903296 466 ClinVar
903295 479 ClinVar
342225 503 ClinVar
903294 527 ClinVar
903293 624 ClinVar
342224 625 ClinVar
342223 635 ClinVar
342222 643 ClinVar
342221 682 ClinVar
342220 729 ClinVar
342219 741 ClinVar
342218 777 ClinVar
342217 794 ClinVar
342216 855 ClinVar
342215 874 ClinVar
342214 919 ClinVar
900765 992 ClinVar
342213 1012 ClinVar
900764 1049 ClinVar
342212 1063 ClinVar
900763 1073 ClinVar
342211 1076 ClinVar
899630 1157 ClinVar
899629 1171 ClinVar
342210 1206 ClinVar
899628 1207 ClinVar
342209 1212 ClinVar
342208 1213 ClinVar
342207 1238 ClinVar
342206 1267 ClinVar
342205 1351 ClinVar
342204 1369 ClinVar
342202 1372 ClinVar
342203 1372 ClinVar
342201 1405 ClinVar
342200 1475 ClinVar
342199 1476 ClinVar
903232 1477 ClinVar
342198 1522 ClinVar
342197 1570 ClinVar
342196 1576 ClinVar
342195 1617 ClinVar
342194 1627 ClinVar
342193 1629 ClinVar
902372 1712 ClinVar
902371 1714 ClinVar
342192 1746 ClinVar
342191 1769 ClinVar
900693 1825 ClinVar
900692 1969 ClinVar
342190 1987 ClinVar
342189 2023 ClinVar
900691 2037 ClinVar
900690 2065 ClinVar
342188 2094 ClinVar
899552 2134 ClinVar
342187 2205 ClinVar
342186 2259 ClinVar
899551 2283 ClinVar
342185 2301 ClinVar
342184 2316 ClinVar
899550 2368 ClinVar
342183 2374 ClinVar
COSN26439856 79 COSMIC
COSN29751061 92 COSMIC
rs6151429 96 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs201846218 2 dbSNP
rs1232073126 3 dbSNP
rs1330935097 7 dbSNP
rs775857149 9 dbSNP
rs772710219 10 dbSNP
rs759058860 14 dbSNP
rs377187248 15 dbSNP
rs981169628 17 dbSNP
rs1047241241 22 dbSNP
rs770665890 23 dbSNP
rs1171101253 28 dbSNP
rs1465715862 31 dbSNP
rs1364208694 34 dbSNP
rs748857964 37 dbSNP
rs1437539637 38 dbSNP
rs1005640475 44 dbSNP
rs777528466 51 dbSNP
rs1169660508 56 dbSNP
rs535795733 61 dbSNP
rs998027946 64 dbSNP
rs1249333443 66 dbSNP
rs1210082345 71 dbSNP
rs1416351524 72 dbSNP
rs1291233851 75 dbSNP
rs1320982910 78 dbSNP
rs1038594113 81 dbSNP
rs1263167338 87 dbSNP
rs941712158 90 dbSNP
rs1336945960 92 dbSNP
rs942357377 93 dbSNP
rs6151429 96 dbSNP
rs1186189075 97 dbSNP
rs1257271445 102 dbSNP
rs146160737 103 dbSNP
rs762361933 105 dbSNP
rs914050036 110 dbSNP
rs1174372525 113 dbSNP
rs1377452263 119 dbSNP
rs747415278 119 dbSNP
rs1433107855 120 dbSNP
rs1302175164 121 dbSNP
rs534778672 122 dbSNP
rs886057656 125 dbSNP
rs977218325 127 dbSNP
rs886057655 130 dbSNP
rs981088096 131 dbSNP
rs1303526503 134 dbSNP
rs1460836418 139 dbSNP
rs1349519442 141 dbSNP
rs1389338497 143 dbSNP
rs1021498685 153 dbSNP
rs570738587 158 dbSNP
rs969758651 159 dbSNP
rs1011467730 164 dbSNP
rs144366706 165 dbSNP
rs1194275343 171 dbSNP
rs1396970616 172 dbSNP
rs1451291617 179 dbSNP
rs1363021574 180 dbSNP
rs537362532 191 dbSNP
rs951477609 195 dbSNP
rs1025711705 196 dbSNP
rs1382627837 200 dbSNP
rs769079150 212 dbSNP
rs1434291091 217 dbSNP
rs1250575884 228 dbSNP
rs1303498974 229 dbSNP
rs907280534 232 dbSNP
rs1372618707 235 dbSNP
rs1047293204 236 dbSNP
rs997955935 240 dbSNP
rs139724334 244 dbSNP
rs1241564054 247 dbSNP
rs150845594 251 dbSNP
rs965222807 266 dbSNP
rs1018600698 270 dbSNP
rs1464984621 271 dbSNP
rs1254951389 273 dbSNP
rs1467234469 280 dbSNP
rs1006816186 289 dbSNP
rs1408930696 290 dbSNP
rs1270528151 292 dbSNP
rs886057654 293 dbSNP
rs547877758 294 dbSNP
rs1456631128 299 dbSNP
rs1207404009 302 dbSNP
rs1326557584 303 dbSNP
rs1038647863 306 dbSNP
rs1438029499 307 dbSNP
rs942955205 308 dbSNP
rs910235874 309 dbSNP
rs1310713950 316 dbSNP
rs749686164 323 dbSNP
rs1050093520 326 dbSNP
rs1056927881 328 dbSNP
rs780413907 332 dbSNP
rs376145489 333 dbSNP
rs5741862 340 dbSNP
rs182635438 342 dbSNP
rs1220862492 348 dbSNP
rs1233535135 352 dbSNP
rs1383962165 353 dbSNP
rs1173002340 364 dbSNP
rs909843209 374 dbSNP
rs1386992338 375 dbSNP
rs984124291 377 dbSNP
rs1467235395 379 dbSNP
rs1249327412 380 dbSNP
rs1472167395 385 dbSNP
rs547501508 389 dbSNP
rs1392839499 396 dbSNP
rs1172655597 397 dbSNP
rs1449481184 398 dbSNP
rs914376896 400 dbSNP
rs1336700873 401 dbSNP
rs990500895 401 dbSNP
rs918667687 402 dbSNP
rs1431477695 405 dbSNP
rs1354677063 406 dbSNP
rs1329988233 409 dbSNP
rs986551305 413 dbSNP
rs1350219883 414 dbSNP
rs1452059981 416 dbSNP
rs1188811703 417 dbSNP
rs1448642931 417 dbSNP
rs1202592001 418 dbSNP
rs1415736438 418 dbSNP
rs1482498997 419 dbSNP
rs1212127341 421 dbSNP
rs976838886 423 dbSNP
rs1228322839 424 dbSNP
rs1273792776 427 dbSNP
rs965150074 428 dbSNP
rs1344322267 429 dbSNP
rs958630370 430 dbSNP
rs1295576560 431 dbSNP
rs1486134637 437 dbSNP
rs1188322462 444 dbSNP
rs1034801104 453 dbSNP
rs1007197573 466 dbSNP
rs1181265537 466 dbSNP
rs532219851 467 dbSNP
rs1411192988 473 dbSNP
rs781175254 477 dbSNP
rs565093599 479 dbSNP
rs1434960387 488 dbSNP
rs1315094642 501 dbSNP
rs141494339 503 dbSNP
rs994225202 517 dbSNP
rs1311827347 526 dbSNP
rs898694289 527 dbSNP
rs576409397 528 dbSNP
rs1348790637 536 dbSNP
rs561282603 542 dbSNP
rs752590601 549 dbSNP
rs1282180793 564 dbSNP
rs890038141 565 dbSNP
rs1056896983 567 dbSNP
rs1051753248 573 dbSNP
rs933006189 576 dbSNP
rs1476361777 590 dbSNP
rs901491790 595 dbSNP
rs1041460003 601 dbSNP
rs1186053300 604 dbSNP
rs542548595 611 dbSNP
rs1454442029 616 dbSNP
rs778826401 625 dbSNP
rs948248365 626 dbSNP
rs1414227918 630 dbSNP
rs574809707 634 dbSNP
rs5770953 635 dbSNP
rs937289080 636 dbSNP
rs1429246235 640 dbSNP
rs886057653 643 dbSNP
rs929970654 644 dbSNP
rs1371889085 651 dbSNP
rs1236741991 657 dbSNP
rs1301574500 658 dbSNP
rs1344618763 660 dbSNP
rs1218372535 662 dbSNP
rs927239872 664 dbSNP
rs1484191126 679 dbSNP
rs7288338 682 dbSNP
rs1195266151 688 dbSNP
rs1246860021 690 dbSNP
rs1468569353 691 dbSNP
rs1194992730 693 dbSNP
rs1375526801 694 dbSNP
rs1477499614 696 dbSNP
rs976765406 697 dbSNP
rs1410704159 709 dbSNP
rs1357172891 710 dbSNP
rs971401400 719 dbSNP
rs576890881 724 dbSNP
rs1395267900 726 dbSNP
rs191335867 729 dbSNP
rs148714527 730 dbSNP
rs911018499 737 dbSNP
rs962785181 740 dbSNP
rs8142033 741 dbSNP
rs968981639 742 dbSNP
rs1292512046 757 dbSNP
rs1410034972 775 dbSNP
rs115593886 777 dbSNP
rs988764005 778 dbSNP
rs1408807720 780 dbSNP
rs1390837615 783 dbSNP
rs377653996 784 dbSNP
rs757016119 785 dbSNP
rs1029933381 788 dbSNP
rs1234938032 792 dbSNP
rs886057652 794 dbSNP
rs1181947151 795 dbSNP
rs905598672 796 dbSNP
rs185687558 800 dbSNP
rs531061882 804 dbSNP
rs1390190275 811 dbSNP
rs1041344962 814 dbSNP
rs1331178812 816 dbSNP
rs1348901060 820 dbSNP
rs1407717394 822 dbSNP
rs1287510493 823 dbSNP
rs1355934483 827 dbSNP
rs1231348255 828 dbSNP
rs1017110438 831 dbSNP
rs1263154275 836 dbSNP
rs181688569 838 dbSNP
rs892879697 840 dbSNP
rs1274624421 844 dbSNP
rs1481881251 847 dbSNP
rs1054579181 854 dbSNP
rs7288050 855 dbSNP
rs1258655290 863 dbSNP
rs1476468552 873 dbSNP
rs886057651 874 dbSNP
rs1186117708 877 dbSNP
rs1292205354 880 dbSNP
rs927094381 887 dbSNP
rs1169747721 893 dbSNP
rs1368889930 910 dbSNP
rs1429353437 913 dbSNP
rs1215474626 917 dbSNP
rs5770805 919 dbSNP
rs1397693213 922 dbSNP
rs949930045 923 dbSNP
rs1228734004 925 dbSNP
rs1352118434 926 dbSNP
rs1187605132 930 dbSNP
rs190569857 933 dbSNP
rs1339547687 939 dbSNP
rs1204080438 949 dbSNP
rs531577148 965 dbSNP
rs1486884577 978 dbSNP
rs1331174971 983 dbSNP
rs1041037288 987 dbSNP
rs962671474 988 dbSNP
rs376910590 992 dbSNP
rs1160584853 996 dbSNP
rs542936316 1004 dbSNP
rs985927504 1005 dbSNP
rs954248328 1010 dbSNP
rs947235041 1011 dbSNP
rs886057650 1012 dbSNP
rs1395424621 1013 dbSNP
rs1030228692 1016 dbSNP
rs1406247778 1030 dbSNP
rs1300886635 1034 dbSNP
rs1401333841 1040 dbSNP
rs1176832511 1041 dbSNP
rs868511268 1049 dbSNP
rs1248508777 1050 dbSNP
rs1321966828 1052 dbSNP
rs1191875672 1054 dbSNP
rs914400530 1061 dbSNP
rs763817529 1063 dbSNP
rs1252241776 1067 dbSNP
rs902768858 1071 dbSNP
rs185955658 1073 dbSNP
rs114833506 1076 dbSNP
rs1211190010 1077 dbSNP
rs559823796 1083 dbSNP
rs769346960 1086 dbSNP
rs540985424 1087 dbSNP
rs970163882 1090 dbSNP
rs1001680534 1101 dbSNP
rs1304948468 1103 dbSNP
rs905721014 1106 dbSNP
rs1045588549 1127 dbSNP
rs1321733998 1128 dbSNP
rs949982672 1147 dbSNP
rs1161344711 1148 dbSNP
rs775298785 1157 dbSNP
rs1385767390 1158 dbSNP
rs1027122692 1167 dbSNP
rs918518184 1171 dbSNP
rs1343796397 1176 dbSNP
rs373166731 1178 dbSNP
rs1369201453 1182 dbSNP
rs897392834 1184 dbSNP
rs1036913242 1188 dbSNP
rs941362159 1195 dbSNP
rs1415228515 1196 dbSNP
rs1427482198 1197 dbSNP
rs1317953271 1198 dbSNP
rs1462318706 1200 dbSNP
rs867069706 1206 dbSNP
rs985590155 1207 dbSNP
rs1214333500 1208 dbSNP
rs954250562 1209 dbSNP
rs1487623034 1210 dbSNP
rs922832756 1211 dbSNP
rs1428762046 1212 dbSNP
rs868201030 1212 dbSNP
rs886057649 1213 dbSNP
rs1184114461 1214 dbSNP
rs145604351 1215 dbSNP
rs143372047 1216 dbSNP
rs1296351031 1217 dbSNP
rs1351174322 1218 dbSNP
rs1452882291 1219 dbSNP
rs1360443345 1220 dbSNP
rs1331611332 1221 dbSNP
rs1412008589 1222 dbSNP
rs1414471136 1222 dbSNP
rs1008219144 1223 dbSNP
rs1170893055 1224 dbSNP
rs1234505035 1225 dbSNP
rs1428164571 1227 dbSNP
rs1389817735 1229 dbSNP
rs1184481642 1230 dbSNP
rs111495898 1232 dbSNP
rs1473885320 1232 dbSNP
rs1235861681 1237 dbSNP
rs1440119278 1238 dbSNP
rs6010033 1238 dbSNP
rs1186924497 1239 dbSNP
rs1441772219 1240 dbSNP
rs1275191275 1243 dbSNP
rs1207058983 1245 dbSNP
rs1339754433 1246 dbSNP
rs1163491159 1247 dbSNP
rs1182428893 1247 dbSNP
rs1206949005 1247 dbSNP
rs1249433637 1247 dbSNP
rs1306553130 1247 dbSNP
rs131716 1247 dbSNP
rs1354693353 1247 dbSNP
rs1415297989 1247 dbSNP
rs1421504774 1247 dbSNP
rs1472216486 1247 dbSNP
rs1484168176 1247 dbSNP
rs1262072256 1251 dbSNP
rs1228593519 1252 dbSNP
rs1286507085 1259 dbSNP
rs576925562 1260 dbSNP
rs889822354 1263 dbSNP
rs1049793621 1264 dbSNP
rs1446575768 1265 dbSNP
rs886057648 1267 dbSNP
rs1242780274 1268 dbSNP
rs1482631801 1271 dbSNP
rs1210599592 1273 dbSNP
rs1239084605 1277 dbSNP
rs1351673239 1281 dbSNP
rs947463721 1282 dbSNP
rs1011089676 1285 dbSNP
rs35519140 1286 dbSNP
rs957072421 1290 dbSNP
rs1033074679 1298 dbSNP
rs1001331166 1299 dbSNP
rs905600964 1305 dbSNP
rs1164590882 1306 dbSNP
rs1045476818 1309 dbSNP
rs558671596 1314 dbSNP
rs1389906620 1315 dbSNP
rs896968736 1321 dbSNP
rs182142919 1322 dbSNP
rs1414375706 1332 dbSNP
rs934511221 1345 dbSNP
rs537135226 1346 dbSNP
rs131717 1351 dbSNP
rs969712128 1356 dbSNP
rs1297096237 1364 dbSNP
rs866107366 1368 dbSNP
rs76841085 1369 dbSNP
rs536970617 1371 dbSNP
rs190478606 1372 dbSNP
rs932783496 1379 dbSNP
rs922686046 1385 dbSNP
rs1248077039 1386 dbSNP
rs539755962 1389 dbSNP
rs994281549 1392 dbSNP
rs1019820283 1405 dbSNP
rs6010032 1405 dbSNP
rs746677403 1405 dbSNP
rs961557305 1405 dbSNP
rs1414381145 1410 dbSNP
rs1160607240 1415 dbSNP
rs1405941650 1417 dbSNP
rs1419735265 1419 dbSNP
rs914042222 1420 dbSNP
rs1432933059 1421 dbSNP
rs1185585547 1422 dbSNP
rs1319990550 1427 dbSNP
rs1050210397 1428 dbSNP
rs1438955381 1447 dbSNP
rs1474778164 1452 dbSNP
rs1252028395 1454 dbSNP
rs538685392 1459 dbSNP
rs1276376510 1461 dbSNP
rs34969940 1466 dbSNP
rs8137818 1470 dbSNP
rs1054366118 1472 dbSNP
rs184515588 1475 dbSNP
rs8142531 1476 dbSNP
rs369110718 1491 dbSNP
rs1222927466 1500 dbSNP
rs893214383 1507 dbSNP
rs35005618 1508 dbSNP
rs34367180 1510 dbSNP
rs1267014054 1516 dbSNP
rs772326666 1517 dbSNP
rs1337645945 1519 dbSNP
rs6009939 1522 dbSNP
rs1245315243 1531 dbSNP
rs969713793 1533 dbSNP
rs928456555 1536 dbSNP
rs1045618289 1540 dbSNP
rs1233012394 1541 dbSNP
rs1158510979 1548 dbSNP
rs1391613150 1549 dbSNP
rs1407268181 1551 dbSNP
rs548869576 1555 dbSNP
rs374960048 1556 dbSNP
rs897020943 1562 dbSNP
rs79823940 1570 dbSNP
rs886057647 1576 dbSNP
rs1352183520 1578 dbSNP
rs1226561610 1587 dbSNP
rs1005504967 1590 dbSNP
rs1372685039 1594 dbSNP
rs984845349 1598 dbSNP
rs180894081 1602 dbSNP
rs886057646 1617 dbSNP
rs1211144325 1618 dbSNP
rs1287247776 1619 dbSNP
rs188667066 1619 dbSNP
rs918998369 1620 dbSNP
rs1254496905 1621 dbSNP
rs886057645 1627 dbSNP
rs886057644 1629 dbSNP
rs532409168 1630 dbSNP
rs1473794529 1632 dbSNP
rs1460679307 1640 dbSNP
rs961484427 1641 dbSNP
rs559335241 1651 dbSNP
rs932646453 1652 dbSNP
rs1019747040 1657 dbSNP
rs1416993144 1661 dbSNP
rs1249180325 1663 dbSNP
rs1191308352 1664 dbSNP
rs1469443205 1671 dbSNP
rs1328055933 1672 dbSNP
rs1251621972 1680 dbSNP
rs1008448225 1681 dbSNP
rs1355207499 1700 dbSNP
rs1228757566 1704 dbSNP
rs1213630772 1705 dbSNP
rs1330240384 1712 dbSNP
rs183937648 1714 dbSNP
rs1257419911 1716 dbSNP
rs1444649452 1718 dbSNP
rs1185425482 1720 dbSNP
rs1368037767 1721 dbSNP
rs1450302565 1722 dbSNP
rs1237125988 1728 dbSNP
rs543533956 1745 dbSNP
rs73172277 1746 dbSNP
rs1443136454 1751 dbSNP
rs1011986501 1754 dbSNP
rs1368891804 1768 dbSNP
rs56788262 1769 dbSNP
rs1381464849 1770 dbSNP
rs1440161337 1780 dbSNP
rs1031723258 1783 dbSNP
rs990048034 1785 dbSNP
rs1299302410 1788 dbSNP
rs7290199 1790 dbSNP
rs753609696 1793 dbSNP
rs926872775 1794 dbSNP
rs1256956695 1799 dbSNP
rs191548826 1803 dbSNP
rs201842530 1805 dbSNP
rs1362818339 1809 dbSNP
rs970142832 1811 dbSNP
rs1455148458 1812 dbSNP
rs998949007 1816 dbSNP
rs1023965984 1822 dbSNP
rs554355241 1828 dbSNP
rs1392797332 1832 dbSNP
rs572598507 1833 dbSNP
rs1193546376 1835 dbSNP
rs992600065 1836 dbSNP
rs1378053184 1837 dbSNP
rs554547051 1840 dbSNP
rs961113058 1842 dbSNP
rs1264265226 1845 dbSNP
rs1170784306 1850 dbSNP
rs1203719398 1852 dbSNP
rs779664630 1856 dbSNP
rs540559806 1860 dbSNP
rs755968556 1861 dbSNP
rs1028677465 1862 dbSNP
rs780138805 1867 dbSNP
rs1045993643 1868 dbSNP
rs1381368088 1873 dbSNP
rs749980062 1893 dbSNP
rs1302396706 1894 dbSNP
rs1333232162 1895 dbSNP
rs901210236 1898 dbSNP
rs948604171 1902 dbSNP
rs1302841983 1910 dbSNP
rs1263012279 1912 dbSNP
rs894370211 1920 dbSNP
rs1041022775 1923 dbSNP
rs1049004965 1924 dbSNP
rs945498972 1948 dbSNP
rs142795679 1949 dbSNP
rs1320242141 1960 dbSNP
rs1434644382 1961 dbSNP
rs1380263511 1963 dbSNP
rs556167510 1969 dbSNP
rs936855740 1970 dbSNP
rs537962107 1974 dbSNP
rs981460898 1981 dbSNP
rs949599463 1986 dbSNP
rs886057643 1987 dbSNP
rs992485433 1988 dbSNP
rs751184854 1991 dbSNP
rs1172520568 1994 dbSNP
rs567207529 1999 dbSNP
rs1475474479 2002 dbSNP
rs960995118 2003 dbSNP
rs1028992159 2005 dbSNP
rs908289342 2008 dbSNP
rs1385397093 2021 dbSNP
rs886057642 2023 dbSNP
rs983863720 2024 dbSNP
rs952666824 2025 dbSNP
rs1286511551 2030 dbSNP
rs1191686805 2032 dbSNP
rs1428223078 2033 dbSNP
rs36019124 2034 dbSNP
rs764662787 2034 dbSNP
rs1028143701 2035 dbSNP
rs568146327 2037 dbSNP
rs138604864 2038 dbSNP
rs756282512 2048 dbSNP
rs1019457759 2053 dbSNP
rs1024422201 2054 dbSNP
rs34290947 2054 dbSNP
rs375820158 2062 dbSNP
rs776085194 2065 dbSNP
rs1205909218 2066 dbSNP
rs566319290 2069 dbSNP
rs1054296040 2070 dbSNP
rs1373273668 2074 dbSNP
rs1271799901 2077 dbSNP
rs1000945488 2085 dbSNP
rs886057641 2094 dbSNP
rs905384900 2098 dbSNP
rs551293439 2099 dbSNP
rs765476304 2104 dbSNP
rs1290729164 2108 dbSNP
rs1416210960 2114 dbSNP
rs944407222 2116 dbSNP
rs1231048303 2117 dbSNP
rs1480271787 2118 dbSNP
rs1181937204 2119 dbSNP
rs759948844 2120 dbSNP
rs1442374224 2124 dbSNP
rs1311922003 2125 dbSNP
rs1409987284 2127 dbSNP
rs1162583936 2129 dbSNP
rs1398018616 2130 dbSNP
rs1166662050 2131 dbSNP
rs1431958816 2131 dbSNP
rs1167111230 2133 dbSNP
rs911625206 2134 dbSNP
rs868563536 2140 dbSNP
rs776657291 2141 dbSNP
rs939685458 2150 dbSNP
rs1461971039 2152 dbSNP
rs1449488635 2156 dbSNP
rs1304644857 2160 dbSNP
rs985939585 2161 dbSNP
rs908173751 2166 dbSNP
rs771199875 2175 dbSNP
rs932775511 2197 dbSNP
rs1298547554 2199 dbSNP
rs1344599230 2204 dbSNP
rs886057640 2205 dbSNP
rs866632623 2220 dbSNP
rs921451364 2225 dbSNP
rs1474447433 2228 dbSNP
rs747086621 2240 dbSNP
rs957628457 2248 dbSNP
rs924880869 2249 dbSNP
rs533032899 2254 dbSNP
rs187444411 2259 dbSNP
rs1450947261 2264 dbSNP
rs975225709 2279 dbSNP
rs1185136780 2280 dbSNP
rs1419320495 2281 dbSNP
rs1271051987 2286 dbSNP
rs772162276 2287 dbSNP
rs1024806977 2291 dbSNP
rs1273771722 2294 dbSNP
rs1234853780 2296 dbSNP
rs1332435356 2299 dbSNP
rs534387866 2301 dbSNP
rs543415092 2302 dbSNP
rs956736493 2305 dbSNP
rs1326331854 2312 dbSNP
rs531837553 2313 dbSNP
rs117951552 2316 dbSNP
rs1219623333 2326 dbSNP
rs1440878562 2331 dbSNP
rs543099774 2334 dbSNP
rs749142708 2339 dbSNP
rs1167765183 2340 dbSNP
rs1268284281 2341 dbSNP
rs780046258 2344 dbSNP
rs994687658 2353 dbSNP
rs1213271470 2360 dbSNP
rs1241860008 2361 dbSNP
rs570115432 2368 dbSNP
rs11704557 2374 dbSNP
rs1036628481 2379 dbSNP
rs528805290 2388 dbSNP
rs780708677 2390 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb HITS-CLIP data was present in GSM1084083. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_SigmaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ggUAGAAGGA---AGUCGGAg 5'
            ||: ||||   ||||||| 
Target 5' ggAUUCUCCUGCCUCAGCCUc 3'
5 - 25
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM4903829
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / CTLTD_shCTL_a
Location of target site NM_000487 | 3UTR | GCUGGUCUCAAACUCCUGACCUCAGGUGAUCCACCCGCCUCAGCCUCCCAAAGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903830
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / CTLTD_shCTL_b
Location of target site NM_000487 | 3UTR | GCUGGUCUCAAACUCCUGACCUCAGGUGAUCCACCCGCCUCAGCCUCCCAAAGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903831
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / 124TD_shELAVL3_a
Location of target site NM_000487 | 3UTR | UCCUGACCUCAGGUGAUCCACCCGCCUCAGCCUCCCAAAGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903832
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / 124TD_shELAVL3_b
Location of target site NM_001085428 | 3UTR | CUCAGGUGAUCCACCCGCCUCAGCCUCCCAAAGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_001085428 | 3UTR | ACAAGAUUUCACCAUGUUGGCCAGGCUGGUCUCAAACUCCUGACCUCAGGUGAUCCACCCGCCUCAGCCUCCCAAAGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_000487 | 3UTR | UUCACCAUGUUGGCCAGGCUGGUCUCAAACUCCUGACCUCAGGUGAUCCACCCGCCUCAGCCUCCCAAAGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_000487 | 3UTR | CAUGUUGGCCAGGCUGGUCUCAAACUCCUGACCUCAGGUGAUCCACCCGCCUCAGCCUCCCAAAGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_000487 | 3UTR | AGAGACAAGAUUUCACCAUGUUGGCCAGGCUGGUCUCAAACUCCUGACCUCAGGUGAUCCACCCGCCUCAGCCUCCCAAAGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 9 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_001085427 | 3UTR | UUCACCAUGUUGGCCAGGCUGGUCUCAAACUCCUGACCUCAGGUGAUCCACCCGCCUCAGCCUCCCAAAGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 10 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_001085426 | 3UTR | UUUCACCAUGUUGGCCAGGCUGGUCUCAAACUCCUGACCUCAGGUGAUCCACCCGCCUCAGCCUCCCAAAGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 11 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000356098.5 | 3UTR | CCAGGGAUUCUCCUGCCUCAGCCUCCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 12 for dataset GSM1084083
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_SigmaAb
Location of target site ENST00000356098.5 | 3UTR | CCAGGGAUUCUCCUGCCUCAGCCUCCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
390 hsa-miR-4419b Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061343 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT072743 GLCE glucuronic acid epimerase 2 2
MIRT180549 TXNIP thioredoxin interacting protein 2 2
MIRT186147 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT271044 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT334761 PPP1R15B protein phosphatase 1 regulatory subunit 15B 2 6
MIRT443279 TSPAN15 tetraspanin 15 2 2
MIRT447047 ZNF439 zinc finger protein 439 2 2
MIRT447351 KIF6 kinesin family member 6 2 2
MIRT448925 CKS1B CDC28 protein kinase regulatory subunit 1B 2 2
MIRT452899 PSD4 pleckstrin and Sec7 domain containing 4 2 2
MIRT453087 SUMF2 sulfatase modifying factor 2 2 2
MIRT454071 SLC35E3 solute carrier family 35 member E3 2 2
MIRT456216 LIX1L limb and CNS expressed 1 like 2 6
MIRT456951 LRP10 LDL receptor related protein 10 2 2
MIRT458025 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT459999 RFT1 RFT1 homolog 2 2
MIRT460046 CDCP1 CUB domain containing protein 1 2 2
MIRT460982 STK17B serine/threonine kinase 17b 2 2
MIRT464405 URM1 ubiquitin related modifier 1 2 2
MIRT466256 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 2
MIRT466536 TBXA2R thromboxane A2 receptor 2 2
MIRT470922 PLD5 phospholipase D family member 5 2 8
MIRT472835 MTMR10 myotubularin related protein 10 2 6
MIRT473352 MEMO1 mediator of cell motility 1 2 2
MIRT475504 HSP90B1 heat shock protein 90 beta family member 1 2 2
MIRT478862 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT480898 BCL9L B-cell CLL/lymphoma 9 like 2 2
MIRT482686 NXN nucleoredoxin 2 4
MIRT484128 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT486172 TLE3 transducin like enhancer of split 3 2 4
MIRT486539 CLCN7 chloride voltage-gated channel 7 2 2
MIRT486588 ZNF619 zinc finger protein 619 2 2
MIRT495475 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT495536 TXNRD2 thioredoxin reductase 2 2 2
MIRT495566 UNC5C unc-5 netrin receptor C 2 2
MIRT495719 PADI1 peptidyl arginine deiminase 1 2 2
MIRT495890 CLOCK clock circadian regulator 2 2
MIRT495932 SLC7A5P2 solute carrier family 7 member 5 pseudogene 2 2 2
MIRT496026 ZBED3 zinc finger BED-type containing 3 2 2
MIRT496216 PAX6 paired box 6 2 2
MIRT496349 VAMP1 vesicle associated membrane protein 1 2 2
MIRT496354 PPY pancreatic polypeptide 2 2
MIRT496400 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT496416 PARVB parvin beta 2 2
MIRT496458 N6AMT1 N-6 adenine-specific DNA methyltransferase 1 2 2
MIRT496519 GINS2 GINS complex subunit 2 2 2
MIRT496562 SLC39A9 solute carrier family 39 member 9 2 2
MIRT498605 KRT8 keratin 8 2 2
MIRT503434 SLC25A45 solute carrier family 25 member 45 2 6
MIRT503573 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT503847 ATP13A4 ATPase 13A4 2 4
MIRT504247 LHPP phospholysine phosphohistidine inorganic pyrophosphate phosphatase 2 4
MIRT505606 SLC35F1 solute carrier family 35 member F1 2 2
MIRT507749 CERS2 ceramide synthase 2 2 4
MIRT508411 C1orf210 chromosome 1 open reading frame 210 2 6
MIRT508508 RSRC1 arginine and serine rich coiled-coil 1 2 6
MIRT508944 AK4 adenylate kinase 4 2 4
MIRT509460 ZNF587 zinc finger protein 587 2 6
MIRT509862 ZNF641 zinc finger protein 641 2 4
MIRT511397 IKZF3 IKAROS family zinc finger 3 2 6
MIRT512517 BTBD19 BTB domain containing 19 2 2
MIRT513507 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 6
MIRT514155 TMEM145 transmembrane protein 145 2 4
MIRT514486 SLPI secretory leukocyte peptidase inhibitor 2 4
MIRT514521 SHISA9 shisa family member 9 2 2
MIRT514970 KLLN killin, p53-regulated DNA replication inhibitor 2 4
MIRT515030 IRAK4 interleukin 1 receptor associated kinase 4 2 6
MIRT515963 C9orf156 tRNA methyltransferase O 2 2
MIRT516092 ZBTB8OS zinc finger and BTB domain containing 8 opposite strand 2 4
MIRT517223 PRIM1 DNA primase subunit 1 2 4
MIRT517459 PEX26 peroxisomal biogenesis factor 26 2 4
MIRT517790 EFCAB11 EF-hand calcium binding domain 11 2 2
MIRT517979 DSCR3 DSCR3 arrestin fold containing 2 2
MIRT519458 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT519599 ZNF805 zinc finger protein 805 2 2
MIRT520339 UBXN2A UBX domain protein 2A 2 2
MIRT521345 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT521571 PTPLB 3-hydroxyacyl-CoA dehydratase 2 1 1
MIRT523382 GSG2 histone H3 associated protein kinase 2 8
MIRT524106 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT524886 ARHGAP11A Rho GTPase activating protein 11A 2 4
MIRT528772 CD1D CD1d molecule 2 2
MIRT530665 TRIM56 tripartite motif containing 56 2 2
MIRT531107 PEX13 peroxisomal biogenesis factor 13 2 2
MIRT531575 ILDR1 immunoglobulin like domain containing receptor 1 2 2
MIRT535173 PLEKHB2 pleckstrin homology domain containing B2 2 4
MIRT544168 HEYL hes related family bHLH transcription factor with YRPW motif-like 2 2
MIRT550582 SLC2A5 solute carrier family 2 member 5 2 2
MIRT551039 GDE1 glycerophosphodiester phosphodiesterase 1 2 4
MIRT551295 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT551339 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT552092 SLFN12L schlafen family member 12 like 2 6
MIRT555403 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT557087 HOXB3 homeobox B3 2 2
MIRT559388 ATP11C ATPase phospholipid transporting 11C 2 2
MIRT560305 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT561028 LIN7C lin-7 homolog C, crumbs cell polarity complex component 2 2
MIRT562460 COX6B1 cytochrome c oxidase subunit 6B1 2 4
MIRT562982 PARK7 Parkinsonism associated deglycase 2 2
MIRT563548 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT564412 EMILIN2 elastin microfibril interfacer 2 2 4
MIRT569437 PCGF3 polycomb group ring finger 3 2 2
MIRT572097 EXOC8 exocyst complex component 8 2 2
MIRT575571 Cd99 CD99 antigen 2 2
MIRT575789 Tnfrsf10b tumor necrosis factor receptor superfamily, member 10b 2 2
MIRT576975 Lmtk2 lemur tyrosine kinase 2 2 2
MIRT610864 ARSA arylsulfatase A 2 2
MIRT614061 NTPCR nucleoside-triphosphatase, cancer-related 2 2
MIRT614141 THAP1 THAP domain containing 1 2 6
MIRT615235 BROX BRO1 domain and CAAX motif containing 2 2
MIRT617429 ANP32E acidic nuclear phosphoprotein 32 family member E 2 4
MIRT618882 MBL2 mannose binding lectin 2 2 2
MIRT618984 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619196 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620323 AQP6 aquaporin 6 2 2
MIRT621960 STX7 syntaxin 7 2 2
MIRT622057 SSBP2 single stranded DNA binding protein 2 2 2
MIRT624930 FBXW2 F-box and WD repeat domain containing 2 2 2
MIRT624986 ZNF665 zinc finger protein 665 2 4
MIRT625463 ZNF681 zinc finger protein 681 2 4
MIRT625497 SMAD9 SMAD family member 9 2 2
MIRT625599 KLHL23 kelch like family member 23 2 2
MIRT625668 C2orf48 chromosome 2 open reading frame 48 2 2
MIRT625888 INADL PATJ, crumbs cell polarity complex component 2 2
MIRT626161 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT626238 ZNF749 zinc finger protein 749 2 2
MIRT626631 SLC30A6 solute carrier family 30 member 6 2 2
MIRT626994 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627898 OLFML2A olfactomedin like 2A 2 2
MIRT627988 NDRG3 NDRG family member 3 2 2
MIRT628324 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT628549 ZNF701 zinc finger protein 701 2 2
MIRT629464 WIZ widely interspaced zinc finger motifs 2 2
MIRT630527 BAZ2A bromodomain adjacent to zinc finger domain 2A 2 2
MIRT631487 KLHL21 kelch like family member 21 2 2
MIRT631957 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632178 CCL22 C-C motif chemokine ligand 22 2 2
MIRT632282 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT632321 TMEM185B transmembrane protein 185B 2 2
MIRT632853 IGF1 insulin like growth factor 1 2 2
MIRT632862 HSPA2 heat shock protein family A (Hsp70) member 2 2 2
MIRT633322 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT633398 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633930 DNAH9 dynein axonemal heavy chain 9 2 2
MIRT634785 CBFA2T2 CBFA2/RUNX1 translocation partner 2 2 2
MIRT634851 ABCF1 ATP binding cassette subfamily F member 1 2 2
MIRT636370 OGFRL1 opioid growth factor receptor like 1 2 2
MIRT637219 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT637690 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT639196 TRAPPC2 trafficking protein particle complex 2 2 2
MIRT639599 CD3EAP CD3e molecule associated protein 2 2
MIRT639681 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640669 ARSK arylsulfatase family member K 2 2
MIRT642377 ZNF581 zinc finger protein 581 2 2
MIRT642403 ZNF556 zinc finger protein 556 2 2
MIRT645079 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646475 ZNF669 zinc finger protein 669 2 2
MIRT647325 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT647490 ZNF639 zinc finger protein 639 2 2
MIRT647989 PDE12 phosphodiesterase 12 2 2
MIRT648196 CENPN centromere protein N 2 2
MIRT649006 MRPL49 mitochondrial ribosomal protein L49 2 2
MIRT650457 ZNF141 zinc finger protein 141 2 2
MIRT650533 CCDC77 coiled-coil domain containing 77 2 2
MIRT650999 ZNF770 zinc finger protein 770 2 2
MIRT653832 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 4
MIRT655734 NRXN3 neurexin 3 2 2
MIRT657577 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT658610 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 2
MIRT658633 ENAH ENAH, actin regulator 2 2
MIRT659820 CASP16 caspase 16, pseudogene 2 2
MIRT661142 ZNF43 zinc finger protein 43 2 2
MIRT661201 MPPE1 metallophosphoesterase 1 2 2
MIRT661436 MANSC1 MANSC domain containing 1 2 2
MIRT661498 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661682 ZNF623 zinc finger protein 623 2 2
MIRT661796 NLRC3 NLR family CARD domain containing 3 2 2
MIRT661808 NUP85 nucleoporin 85 2 2
MIRT661861 ZNF766 zinc finger protein 766 2 2
MIRT661889 EXOSC6 exosome component 6 2 2
MIRT662291 SLC29A4 solute carrier family 29 member 4 2 2
MIRT662515 ANGPT4 angiopoietin 4 2 2
MIRT662682 LRRC47 leucine rich repeat containing 47 2 2
MIRT662716 C10orf111 chromosome 10 open reading frame 111 2 4
MIRT662834 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT662890 PCDHA6 protocadherin alpha 6 2 2
MIRT663134 ULBP3 UL16 binding protein 3 2 2
MIRT663710 ABHD17B abhydrolase domain containing 17B 2 2
MIRT663869 MUC20 mucin 20, cell surface associated 2 2
MIRT664267 NMUR1 neuromedin U receptor 1 2 2
MIRT664510 POLR3K RNA polymerase III subunit K 2 2
MIRT664659 TRIM65 tripartite motif containing 65 2 2
MIRT664849 HUS1 HUS1 checkpoint clamp component 2 2
MIRT664944 CARD6 caspase recruitment domain family member 6 2 4
MIRT665348 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 2
MIRT665514 UTP15 UTP15, small subunit processome component 2 2
MIRT665648 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT665668 TRAF1 TNF receptor associated factor 1 2 2
MIRT665692 TNPO3 transportin 3 2 2
MIRT665741 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665850 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT665940 TBC1D19 TBC1 domain family member 19 2 4
MIRT666005 SYNJ2BP synaptojanin 2 binding protein 2 2
MIRT666172 SNX27 sorting nexin family member 27 2 4
MIRT666373 SHOX short stature homeobox 2 2
MIRT667004 PDPN podoplanin 2 4
MIRT667185 NR2F6 nuclear receptor subfamily 2 group F member 6 2 4
MIRT667603 LIPC lipase C, hepatic type 2 2
MIRT667828 IRGQ immunity related GTPase Q 2 2
MIRT667862 IPCEF1 interaction protein for cytohesin exchange factors 1 2 2
MIRT668296 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 4
MIRT668463 FAM208A family with sequence similarity 208 member A 2 2
MIRT668580 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 4
MIRT669012 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669103 CDK19 cyclin dependent kinase 19 2 2
MIRT670073 ZNF783 zinc finger family member 783 2 2
MIRT670326 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT670756 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670964 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT670985 MED17 mediator complex subunit 17 2 2
MIRT671195 ZNF891 zinc finger protein 891 2 2
MIRT672423 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672495 YIPF4 Yip1 domain family member 4 2 2
MIRT672537 MGAM maltase-glucoamylase 2 2
MIRT672749 ZNF585B zinc finger protein 585B 2 4
MIRT673390 ZNF124 zinc finger protein 124 2 2
MIRT673452 ZNF583 zinc finger protein 583 2 2
MIRT673917 DCTN6 dynactin subunit 6 2 2
MIRT673952 ZNF500 zinc finger protein 500 2 2
MIRT674102 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674167 BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 2 2
MIRT674206 FUT2 fucosyltransferase 2 2 2
MIRT674452 PURB purine rich element binding protein B 2 4
MIRT674687 PLCE1 phospholipase C epsilon 1 2 2
MIRT674701 TMEM59 transmembrane protein 59 2 2
MIRT674800 NPR1 natriuretic peptide receptor 1 2 4
MIRT675247 MAK male germ cell associated kinase 2 2
MIRT676012 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676374 APTX aprataxin 2 2
MIRT676834 TNFSF15 TNF superfamily member 15 2 2
MIRT678193 CRCP CGRP receptor component 2 2
MIRT678293 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT679532 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679669 RABAC1 Rab acceptor 1 2 2
MIRT679850 GPR75 G protein-coupled receptor 75 2 2
MIRT680533 PRIM2 DNA primase subunit 2 2 2
MIRT680563 ZNF584 zinc finger protein 584 2 2
MIRT680577 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT680849 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680888 MAPK1IP1L mitogen-activated protein kinase 1 interacting protein 1 like 2 2
MIRT680940 EVC EvC ciliary complex subunit 1 2 2
MIRT680964 SLC15A1 solute carrier family 15 member 1 2 4
MIRT681017 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681065 PAQR7 progestin and adipoQ receptor family member 7 2 2
MIRT681209 ZNF638 zinc finger protein 638 2 2
MIRT681291 RFC2 replication factor C subunit 2 2 2
MIRT681366 BRI3BP BRI3 binding protein 2 2
MIRT681517 STAT2 signal transducer and activator of transcription 2 2 2
MIRT681549 ZNF738 zinc finger protein 738 2 2
MIRT681574 ABHD15 abhydrolase domain containing 15 2 2
MIRT681597 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT681806 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681912 SLC11A2 solute carrier family 11 member 2 2 2
MIRT681953 SLC19A3 solute carrier family 19 member 3 2 2
MIRT682037 AGXT2 alanine--glyoxylate aminotransferase 2 2 4
MIRT682111 ITGA3 integrin subunit alpha 3 2 4
MIRT682190 SLC38A7 solute carrier family 38 member 7 2 2
MIRT682247 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682394 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682554 EXOSC2 exosome component 2 2 2
MIRT682665 CASP8 caspase 8 2 2
MIRT683283 ZNF99 zinc finger protein 99 2 2
MIRT683359 SCARF1 scavenger receptor class F member 1 2 2
MIRT683453 ACOT2 acyl-CoA thioesterase 2 2 2
MIRT683596 GSTCD glutathione S-transferase C-terminal domain containing 2 2
MIRT683661 ZNF695 zinc finger protein 695 2 2
MIRT683770 CPE carboxypeptidase E 2 2
MIRT683807 NOTO notochord homeobox 2 2
MIRT684462 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684525 C1orf174 chromosome 1 open reading frame 174 2 2
MIRT684985 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685012 CXorf56 chromosome X open reading frame 56 2 2
MIRT685072 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685115 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685477 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT685831 SLC27A1 solute carrier family 27 member 1 2 2
MIRT686032 UMPS uridine monophosphate synthetase 2 2
MIRT686559 TPM3 tropomyosin 3 2 2
MIRT687287 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT687309 OTUD7B OTU deubiquitinase 7B 2 2
MIRT688085 GLUL glutamate-ammonia ligase 2 2
MIRT688168 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT688584 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT688601 CYCS cytochrome c, somatic 2 2
MIRT688921 C11orf84 chromosome 11 open reading frame 84 2 2
MIRT689285 C5AR2 complement component 5a receptor 2 2 2
MIRT689622 AKAP6 A-kinase anchoring protein 6 2 2
MIRT690051 C6orf141 chromosome 6 open reading frame 141 2 2
MIRT690224 C5orf45 MRN complex interacting protein 2 2
MIRT690272 CAMLG calcium modulating ligand 2 2
MIRT690331 MRPS30 mitochondrial ribosomal protein S30 2 2
MIRT690480 ZNF33A zinc finger protein 33A 2 2
MIRT690526 ZNF566 zinc finger protein 566 2 2
MIRT690581 MICA MHC class I polypeptide-related sequence A 2 2
MIRT690675 RPF2 ribosome production factor 2 homolog 2 2
MIRT690790 ZNF589 zinc finger protein 589 2 2
MIRT690873 PLEKHG2 pleckstrin homology and RhoGEF domain containing G2 2 2
MIRT691142 HJURP Holliday junction recognition protein 2 2
MIRT691158 APOL6 apolipoprotein L6 2 2
MIRT691288 CENPM centromere protein M 2 2
MIRT691435 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT691749 IKBKG inhibitor of nuclear factor kappa B kinase subunit gamma 2 2
MIRT691833 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT691885 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT691947 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT692047 PAK1IP1 PAK1 interacting protein 1 2 2
MIRT692668 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692767 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT692859 ZSWIM1 zinc finger SWIM-type containing 1 2 2
MIRT693122 SCNM1 sodium channel modifier 1 2 2
MIRT693514 MOB3A MOB kinase activator 3A 2 2
MIRT693648 ACBD7 acyl-CoA binding domain containing 7 2 2
MIRT693688 MXRA7 matrix remodeling associated 7 2 2
MIRT694078 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT694163 SLC36A2 solute carrier family 36 member 2 2 2
MIRT694262 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT694506 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694556 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT694639 MRI1 methylthioribose-1-phosphate isomerase 1 2 2
MIRT694710 CD300LG CD300 molecule like family member g 2 2
MIRT694753 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT694896 ZNF417 zinc finger protein 417 2 2
MIRT695158 BTD biotinidase 2 2
MIRT695275 CD209 CD209 molecule 2 2
MIRT695434 TCF23 transcription factor 23 2 2
MIRT695817 SRD5A1 steroid 5 alpha-reductase 1 2 2
MIRT696008 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT696345 SLC35D2 solute carrier family 35 member D2 2 2
MIRT696368 EIF2S3 eukaryotic translation initiation factor 2 subunit gamma 2 2
MIRT696533 C3 complement C3 2 2
MIRT696779 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT697075 PSMC4 proteasome 26S subunit, ATPase 4 2 2
MIRT697498 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT697630 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT697931 TXNDC16 thioredoxin domain containing 16 2 2
MIRT697966 TSPYL1 TSPY like 1 2 2
MIRT698237 TMEM216 transmembrane protein 216 2 2
MIRT698643 TES testin LIM domain protein 2 2
MIRT698661 TERF2 telomeric repeat binding factor 2 2 2
MIRT698974 SPAST spastin 2 2
MIRT699047 SOAT1 sterol O-acyltransferase 1 2 2
MIRT699193 SLX4IP SLX4 interacting protein 2 2
MIRT699586 SIKE1 suppressor of IKBKE 1 2 2
MIRT699759 SEPHS1 selenophosphate synthetase 1 2 2
MIRT700350 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700402 RAB13 RAB13, member RAS oncogene family 2 2
MIRT700418 QDPR quinoid dihydropteridine reductase 2 2
MIRT700546 PTBP2 polypyrimidine tract binding protein 2 2 2
MIRT700774 PLA2G4A phospholipase A2 group IVA 2 2
MIRT700875 PER2 period circadian clock 2 2 2
MIRT700952 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT701077 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT701172 PACS2 phosphofurin acidic cluster sorting protein 2 2 2
MIRT701479 NEK9 NIMA related kinase 9 2 2
MIRT701661 MYH9 myosin heavy chain 9 2 2
MIRT701779 MSL2 MSL complex subunit 2 2 2
MIRT702137 MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5 2 2
MIRT702494 KIAA1328 KIAA1328 2 2
MIRT703058 GTPBP10 GTP binding protein 10 2 2
MIRT703224 GOLGA3 golgin A3 2 2
MIRT703620 FBXO45 F-box protein 45 2 2
MIRT703657 FAM60A SIN3-HDAC complex associated factor 2 2
MIRT703765 FAM118A family with sequence similarity 118 member A 2 2
MIRT703832 EVI5 ecotropic viral integration site 5 2 2
MIRT703862 ERN1 endoplasmic reticulum to nucleus signaling 1 2 2
MIRT704664 CLCC1 chloride channel CLIC like 1 2 2
MIRT704812 CDC73 cell division cycle 73 2 2
MIRT705608 APAF1 apoptotic peptidase activating factor 1 2 2
MIRT705625 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 2
MIRT705682 ANKRD40 ankyrin repeat domain 40 2 2
MIRT705813 AKNA AT-hook transcription factor 2 2
MIRT706238 SYT15 synaptotagmin 15 2 2
MIRT706567 EIF2AK2 eukaryotic translation initiation factor 2 alpha kinase 2 2 2
MIRT709657 DFFB DNA fragmentation factor subunit beta 2 2
MIRT710609 ZNF555 zinc finger protein 555 2 2
MIRT711717 IREB2 iron responsive element binding protein 2 2 2
MIRT714122 TMED9 transmembrane p24 trafficking protein 9 2 2
MIRT715204 FKTN fukutin 2 2
MIRT718260 ZDHHC8 zinc finger DHHC-type containing 8 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4419b Fluorouracil 3385 NSC19893 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-4419b Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-4419b Cisplatin + Decitabine resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-mir-4419b Androstenedione+Anastrozole sensitive cell line (MCF-7)

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