pre-miRNA Information
pre-miRNA hsa-mir-412   
Genomic Coordinates chr14: 101065447 - 101065537
Synonyms MIRN412, hsa-mir-412, MIR412
Description Homo sapiens miR-412 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-412-3p
Sequence 54| ACUUCACCUGGUCCACUAGCCGU |76
Evidence Not_experimental
Experiments
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
rs61992671 18 GWAS
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs369997462 1 dbSNP
rs1439693090 7 dbSNP
rs1301668924 11 dbSNP
rs534204576 13 dbSNP
rs775386036 14 dbSNP
rs762832140 15 dbSNP
rs1203323285 16 dbSNP
rs61992671 18 dbSNP
rs1022012324 19 dbSNP
rs1207609936 20 dbSNP
rs139967426 21 dbSNP
rs539487075 22 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SCN8A   
Synonyms BFIS5, CERIII, CIAT, EIEE13, MED, NaCh6, Nav1.6, PN4
Description sodium voltage-gated channel alpha subunit 8
Transcript NM_001177984   
Other Transcripts NM_014191   
Expression
Putative miRNA Targets on SCN8A
3'UTR of SCN8A
(miRNA target sites are highlighted)
>SCN8A|NM_001177984|3'UTR
   1 AGGAGAACAAAAATTCAGTATTATACAGATCTAAAACTCGCAAGTGAAAGATTGTTTACAAACTTCCTGAATATTATCAA
  81 TGCAGAACAGCTGTGGAGACTCTAACCTGAAGATCTATACCAAACGTCGTCTGCTTACCACGTAACACAGCTGCATCTTG
 161 AGCAGTGACCTGCCAAGGGCAAAGGACCCCGCTCCCTAGACTTACAGATTTTCTAATGCTTGGGCAGGTGGTTACTGCAT
 241 GTTCCACATCAGTCAATGCAACTTAGGACAAAACTAACCAGATACAGAAACAGAAGAGAGGCTGCCGGGACCAGCATATT
 321 TCCGTTGCAGCCAAATGGATTTTATTTTTTCATTTTATTGATTCTCAGAAGCAGAAAGCATCACTTTAAAAGTTCGTTTG
 401 TTCATGCAAACTATATTTGCATTCTTACATTAGTTAAGCTAAGCAGCAAAAAGAAAACACACACACACACTCACATTTAG
 481 CCCATGTCATTTAATTGTCAGTTTCTTTGACATAAAGCGCATCTTCTCCACATGGGCTTCACGTGGTTTGGAGATGGGTG
 561 GGGGAAAACAATCAGGTTTCTTCAGGCTGAGGAGGACTTGCTCAGGCCGATTCCAAACATTGTGCTCGTTCAATGCGTAG
 641 AAATGATTTGCATGATGGCATGCCGTGATCAGAAGTCATGCATGAGATCCATACACCACAGGACACTACTAATCTAGTCC
 721 CTTGCACTGGGTCAGCCTTTGGACAGGACCCAGCCCTGCACCGTTCACTGTATTTGGAGAAAATGGTAAGAGTTCCATAC
 801 CGGCTACAATTCTTTGAGTTCTTAAAAGTCCTTCATACACCTTCTGGGTAGGGAAACAACCAACTAATTGACTAACACCA
 881 CCAACAACAAAAAACAAACCCAATCCAACAAGCAGATGGATCCGTTGCGTGTATATGTTTAACAGACATCTCTAACATAC
 961 AGCCATTGTTGCACATTTTGCAAGATGAACTATTTAATGCTGCTCTGTGTCCAGTACATGGGGGAGACTTTGATCCCAAA
1041 TGGCTTGTACTATTTATGTCACTGTAAAACCAAATCCTAGGGCTAAAAAAAAAATTCATTTGTATCTTGCAATATTTATG
1121 ACGATCGTTTAGCCTTCATACTGGAGAATTGACACTTATTTGGGGTAGAGATAAAAGTGCTTTTCAAAGTAGCACCAGTT
1201 ATCTCTAGGGGTAATTTGGGGAACTTAAAATGACCTTTCATTGGGAGTTATGGGGTGCTCATTTCATTTCGTATCATGTC
1281 CTCTGCATTGTGGCTTTCTCCAGGCATGGGTCGATACCGCGAGGGGTTCAGATATTCTGAACTGACCTCTCTCTTCTGCA
1361 GAGGGGTCATCGCATACTCACACACTGCATGGCTCCCCCTGCCTCCATCACATTTCTCCACTGAGCAGGGCTTCCCTTGC
1441 CCACAGAGGTGGGTGAGGGTAGCAGCATTGGGGTTACGGCTGTGGTTTCTTTCACTTATTATTAGAATAATAGTCACTGG
1521 TGAGACCTGAGGTAGAGATGGAGCCGCCTCTGAACCAAGCCCACTTGGTTTCTTTACTGCACTGGTTTTCATGAGAAAGC
1601 AATTTAATATTAATTCTTTAGGATGTTCCAGCTTCCCTCAGTGCATTCCCTTGCAGCCAGTTTTGCTATCTGCTTAGCGA
1681 CCTGCCCATTGTCATTGAAGTGTGGCTTCTGGGGGAGCGTCATATCTTCCATTCCATCTCCTGCTTTAGGAAAGACAGTT
1761 TTTAGTCCAGGGGTTTCTCACCTAATGACTGGATTTCAAAGCCAAGATGCTGCAGTTGAATGTGTCAGGAAGTCTCTATA
1841 CAAAGAGTGAAAAGAGACTTTAGCATGTGAACCAAATCCAAATAAATTCTTCCTGAACCATACACTAGAGGGGGAAGAAG
1921 AACCAACCCATAATCAGACACACCGATCTGCCTTGCAGTAGAAGCACTTTGAAGGTAATTTCACAGTCCACCAGACTAGT
2001 TTTGCATAGAACAAACCACAGTAAGTCGGCAAGCAGAGCTTTCTATCTTGTTGGACCACTAGAAACTGTCCAGCTCTCTT
2081 AAGCCTGCTTCTGCAGCAGCATCCGTAGAATTTTTGTACTACACCCAATACCAGACTGGGAAGGCCTATCTTTCAGTGAC
2161 CCTGCTAACTGCTAGGATGAATGTATAGTAACATGTACAGGCTACATTGTAAACAGCACAAAACAGAAGCTGACATGTGT
2241 GGTTATTCTTTTTAAGAGAATTATAAATACTGTAATATATAATTTTATTTTATTGGCATGCCTTTTTGTAAATACAAATT
2321 ATTAACTTATTAAATAGGAAATGGCTTCTGGCTTATGCCATTGTCATGTTTATTTTTATTTTTTATACTTTTCTTTCTTC
2401 TTAGAACTTAGATGCTGTCAGCCAATGTACATCCCCAAACCAGACAGACAGACAAAAAATTTTTTATTGCTAATGGTCTT
2481 TTCCAAAACAACAAAAAATATATATTTTTGTTCCAATGTGCAATAAATTCTAACCACGTCTATGCAAGATTTGGCTAAAC
2561 TTAATAATTGTTCTTAGGTCTTGAGATGGGCAACAGAGCTGTAAGATCCCGCCAAGTACACCATGTGCTCATGCTAGTGA
2641 TGTCATTAAGCTACTAGGGCATAGTGATGAGATTTTTCTGAGATCTAACCGTTTCCCTCCGCTAGCTCCTGACCCCAGCC
2721 CAGCAGGCTGTCTCCTCAGTAACACATGGGCCTTGGTATCTGGCACCCATCAGCCAGCCTCATAGGAAAGAAGCCACCTC
2801 CGCTGTATTTGAAGTTTCACTTTTTAAAAAAAAAATGTTTCCCACCTTTTTATCCTTCACCCACTGTCCTTCCACCTGCT
2881 CACTCACTCACTCTCTCACCCATCCTGCTCCACACTTCTTTGGTAGTAAATGACACCATCACCAGCAGTTTACACCCGCA
2961 GTTAACAGGCATCGAACTGAAAGAATCAGTGATGACGTTTTTGTGCATCTTCGCTGAGTGGGTAAGTGGCAATGCTTTGC
3041 CAAATATTAACGAAGCCAATCAAAGAGCAGCGCAGCCACAGTATCACTGCACATATATATATAGATATATAAATATAATA
3121 TAAATATTTATTTTTTGTAGCCAGGTCCTTGGTGCAGTATTTATACTCCACAATCCACCTTTTAAAAAAAGGACAAAAAG
3201 CAAAAAGATGTGTGATGCTGTTAATAATTTAAAATGCAGAGCCAAAGCCACTGAGCAGCAGCTGACATGGTTGCTGGTTT
3281 GTGTGTGAAAAACATTTTCCCCCTCTTCTTTCCTTAACCTCCTTGTTGCTTAGGATGAGGAGACTCTGTAATTTAAAGCA
3361 GAGGACGAGAGGAGGAAGAAACTTCCATGTTAACATGGCCTACTCTCACTCCTTTCTAAACGAGCCACTTTTGGCGTCAG
3441 AAGTTGACTGGAGAGAGATAAACAAACTCCCAGTCAAAGCCCCTAAAGCGACAGTGCCCAGAGTTCTTTTATTTTTTGCT
3521 GCAACCAACGTAAACCTGTAAAAGACCAACAGTGAAGATTAGTGTATTAGTGAATGCATGGAGGCCAATGCTGCCCTAAT
3601 GAGACGTGATAAAAAGTCCATCACTCCTCTAAGCCAAAAGGAAACAAAATAAAAATGACCCTTTTTACTGTACAAGGGAA
3681 GCCTGTCTTGGTGTGTTTGTTGCTTGACTATCCCAATTCTTGAGTCCTGGGAGGGGTCTGGGAATTGGGACCTTAGCACA
3761 TTTGGGGAAAGGAGGGGAATAGAGGGAAGAGAAATCAAAGGGGCTCTCGCAAAGTTCTGGCTAAGAAGGAGAGATTGGAA
3841 GAAAAGCAAGGTCCTGACCCCCCCCAGATCCCCACTCACCCATTGCATGTGGCATTCCCCACTACTGGCCGGTGCTTAGA
3921 GGCCCATAAAACCTCTCTTCACCTAATCCACCTGGCAGAGCCCTCAGAGATGACGTCAGCCAACCCAGCTGGACTGGCCT
4001 TACTTCTGCCTTTTTCACCTGTATGTTAAAAAACAAAAACAAAAAAACCCTATCCCTGTGCCCCAAAGCTAGGGCATGTG
4081 CGATGCCCAACAGCCTCCACTCTGCAAGCTCATACTGGGCCCTGCCCTCCATCGCCCCAGACAGGCCCACAGACGAGGGC
4161 TGGTCTCCTTCACATTTGTGTGGGGGTGGGGGCACGCTTCCTCTTCCTTCTCTCCCTGTCCCCCTTTGGGGACATCCCTC
4241 TCTAGGCCTAGGCCATGTCTCCTGGTTCAGGAACACTCTCTCAGGAGGATCTCGAAGTGCCCACTCTAGTCCGCTCCAGT
4321 AGCTCCACTCTGGAGCGAGATGGCTGGTAGGTCAGTCCCCATCCTCCTCCCCTCGGCCCCCAGCCTCCAGGCCTGCTGTG
4401 GAGGTGAGATCGCCATGGGTCATGACTTTGTGACTTGAGTCCTGGGCATCTTCTGTAATGATGCCTCTTTCTTTTCTCAG
4481 ATGTTGCCCACAGTTTAGCAAAAAGCTTCGTTCATTTTCAGGTACTCCCCACCCCCTAAAGAATTGGCTGCAACTTGCCA
4561 GCCAGGGGGACATCAGGAGAGAAGAGGAAGTCTGGGTTGGGAGGGGCCCAAGTTTTGCAACAGAGTTTCCATTGTTCAGC
4641 TCTGTGCTTTCTTGGATTCCCTTTCCAAGATTACCAAGATTTCCTCCATTAAAACTCCTGAGGCACCCCCTGCCCCTGCC
4721 CCCCACTGCTGTTTGCTGTACATAGAGGCTAAGTGGGGTGGGGTGGGTGGGTGTGCACATGTGGTGTGTGTGTGTGTGTG
4801 TGAAGAATGTATATAGGTAAAGGGGAGTGTGGTCCAGTGGTTCCAGAAAAGGGACAGAACTGTGTTCTGTCCCTAGCTTG
4881 ACCGCTGGCTCGCTGTGTGGCCTTGGGCAAGTCACTTAACCTCTCTGTGCCTCAGTTTCCCCATCTGTAAAATGGGGATA
4961 ATAATACTGACCTACCTCACAGGGGTGTTGTGAGGCTTTAACTAAATGTTTTGTAAAGCGTTTTGAGATACAGAGGCAAA
5041 GGCGCTAGGGAAGGGCAAAGTATTATTGGACTTAAGGAAGCTGAAATGGTACCATAAATGCTGCTATTCTGAGAGCCATT
5121 TTAAACTGCACTGCTCCAACCACCCCCGCTTCTCATCACCAGGACAGCAGGTCGAGAAAATGTCTTTCCTTTCACTTGCT
5201 TCTGGGGTTTGTGATTATTCAAGACAATTTTTTCCCCTTGCTGTATCTCCTTCCCTCACCTCCTCGACTTGTTCCCTGTT
5281 CTGTTTATGCGGAAATGGCAGAAATGCTTGAGAAATGAGAATGTGTAAGTGGATTGGAAGTTTATAGTATGAAATTTCAA
5361 TTTTACTTTGTACTGTACATCTTTTTACTTTAGAATTTGCAATAAAGGGTTACGTCAATCTTGTTTTCAACTCTCAAAAA
5441 AAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugccgaUCACCUGGUCCACUUCa 5'
                || ||  ::|||||:| 
Target 5' gcccacAGAGG--TGGGTGAGGg 3'
1439 - 1459 133.00 -13.60
2
miRNA  3' ugCCGA-UCACCUGGUCCACUUCa 5'
            |||| |||||    ||||::| 
Target 5' gaGGCTAAGTGG----GGTGGGGt 3'
4745 - 4764 131.00 -21.20
3
miRNA  3' ugCCGAUCACCU-GGUCCACUUCa 5'
            ||:|  ||||  ::||||::| 
Target 5' gtGGTT--TGGAGATGGGTGGGGg 3'
543 - 564 125.00 -17.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
588279 6 ClinVar
448289 7 ClinVar
378564 9 ClinVar
309395 2235 ClinVar
309411 3706 ClinVar
309416 3913 ClinVar
309428 4784 ClinVar
309429 4784 ClinVar
309430 4784 ClinVar
309431 4784 ClinVar
COSN30511886 13 COSMIC
COSN30161463 17 COSMIC
COSN31525489 32 COSMIC
COSN30189913 40 COSMIC
COSN510565 47 COSMIC
COSN31960788 103 COSMIC
COSN8586288 118 COSMIC
COSN31540100 257 COSMIC
COSN19105476 372 COSMIC
COSN31603385 405 COSMIC
COSN31523274 416 COSMIC
COSN22823499 629 COSMIC
COSN27063076 651 COSMIC
COSN31595622 755 COSMIC
COSN28643807 763 COSMIC
COSN19663224 812 COSMIC
COSN19663019 815 COSMIC
COSN31591913 993 COSMIC
COSN32088097 1033 COSMIC
COSN29515636 1095 COSMIC
COSN29403686 1340 COSMIC
COSN22179028 1410 COSMIC
COSN7373509 1457 COSMIC
COSN21004141 1600 COSMIC
COSN22155855 1633 COSMIC
COSN16991153 1719 COSMIC
COSN5945972 1749 COSMIC
COSN7373510 1921 COSMIC
COSN21573461 2421 COSMIC
COSN1576039 2426 COSMIC
COSN22894557 2460 COSMIC
COSN1576040 2541 COSMIC
COSN21324440 2556 COSMIC
COSN16105385 2692 COSMIC
COSN31566394 2801 COSMIC
COSN31665433 2823 COSMIC
COSN31571848 2825 COSMIC
COSN30164959 2826 COSMIC
COSN31966908 2828 COSMIC
COSN20083792 2836 COSMIC
COSN31521584 2836 COSMIC
COSN31549760 2847 COSMIC
COSN26603231 2867 COSMIC
COSN29462675 2958 COSMIC
COSN31539804 2968 COSMIC
COSN30564569 3035 COSMIC
COSN30746670 3072 COSMIC
COSN30728928 3097 COSMIC
COSN2492747 3347 COSMIC
COSN7616706 3501 COSMIC
COSN28967387 4376 COSMIC
COSN2529242 4788 COSMIC
COSN23052205 4802 COSMIC
COSN6536568 5314 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1269728634 3 dbSNP
rs747815156 6 dbSNP
rs771414635 7 dbSNP
rs1057520364 9 dbSNP
rs777371488 17 dbSNP
rs746868733 19 dbSNP
rs1268499423 21 dbSNP
rs770947079 23 dbSNP
rs1184816518 25 dbSNP
rs776382787 37 dbSNP
rs1453685163 40 dbSNP
rs113507937 41 dbSNP
rs969849100 46 dbSNP
rs1393502070 47 dbSNP
rs768854817 49 dbSNP
rs1300718444 50 dbSNP
rs1205859567 53 dbSNP
rs1275913048 62 dbSNP
rs1267886997 63 dbSNP
rs1327415548 64 dbSNP
rs1017413060 76 dbSNP
rs928370658 85 dbSNP
rs1298763470 86 dbSNP
rs1218268273 91 dbSNP
rs1368125829 98 dbSNP
rs1304693300 100 dbSNP
rs1407968123 114 dbSNP
rs938422412 122 dbSNP
rs1210802233 126 dbSNP
rs1262569975 127 dbSNP
rs531602660 129 dbSNP
rs912873848 130 dbSNP
rs973355886 136 dbSNP
rs769696262 138 dbSNP
rs920510780 139 dbSNP
rs929312834 142 dbSNP
rs1158216467 143 dbSNP
rs1207849812 149 dbSNP
rs1409459088 156 dbSNP
rs983450066 165 dbSNP
rs917327564 166 dbSNP
rs1209040237 183 dbSNP
rs3195310 186 dbSNP
rs1312384803 187 dbSNP
rs548702483 190 dbSNP
rs7301577 191 dbSNP
rs1050276546 192 dbSNP
rs1159483095 193 dbSNP
rs891242907 197 dbSNP
rs1400989919 198 dbSNP
rs1412275854 199 dbSNP
rs1335543365 203 dbSNP
rs1302304336 208 dbSNP
rs866016175 212 dbSNP
rs1342851656 219 dbSNP
rs547735332 225 dbSNP
rs1415922774 236 dbSNP
rs1008725483 238 dbSNP
rs1157134806 241 dbSNP
rs886049586 244 dbSNP
rs1457058366 250 dbSNP
rs1015619681 251 dbSNP
rs1044451865 253 dbSNP
rs1288176800 255 dbSNP
rs755864278 256 dbSNP
rs878933991 257 dbSNP
rs1180792633 272 dbSNP
rs193021475 274 dbSNP
rs995434668 276 dbSNP
rs936155194 278 dbSNP
rs1230582520 279 dbSNP
rs1261554778 281 dbSNP
rs1328286798 286 dbSNP
rs1054662966 287 dbSNP
rs749324238 288 dbSNP
rs1026865685 294 dbSNP
rs892017672 304 dbSNP
rs534002233 307 dbSNP
rs185269212 325 dbSNP
rs1042016462 336 dbSNP
rs886049587 337 dbSNP
rs1385012099 339 dbSNP
rs890207087 344 dbSNP
rs1318856976 352 dbSNP
rs1008683312 365 dbSNP
rs570271876 383 dbSNP
rs1434644857 390 dbSNP
rs560001045 391 dbSNP
rs779857857 396 dbSNP
rs964562318 401 dbSNP
rs1181321694 406 dbSNP
rs1368426569 414 dbSNP
rs1166021243 422 dbSNP
rs1444728462 423 dbSNP
rs1244430931 425 dbSNP
rs1186354282 430 dbSNP
rs146762782 435 dbSNP
rs1248463894 439 dbSNP
rs1473462221 441 dbSNP
rs1206705258 447 dbSNP
rs1182184812 450 dbSNP
rs1353913830 455 dbSNP
rs1028005060 457 dbSNP
rs1323060700 457 dbSNP
rs397974598 457 dbSNP
rs947031876 457 dbSNP
rs1434712634 460 dbSNP
rs886049588 461 dbSNP
rs1366223844 465 dbSNP
rs979654583 467 dbSNP
rs1385456580 468 dbSNP
rs530373717 472 dbSNP
rs1173879299 473 dbSNP
rs932886420 483 dbSNP
rs917290914 490 dbSNP
rs891269949 500 dbSNP
rs1166148249 502 dbSNP
rs1448308764 507 dbSNP
rs971369017 511 dbSNP
rs1194807043 513 dbSNP
rs557112732 518 dbSNP
rs980180185 519 dbSNP
rs1037494006 520 dbSNP
rs1490815101 520 dbSNP
rs897176648 522 dbSNP
rs927366770 542 dbSNP
rs548365738 543 dbSNP
rs1272154909 560 dbSNP
rs886049589 560 dbSNP
rs1231317306 562 dbSNP
rs995473651 563 dbSNP
rs1026979833 569 dbSNP
rs936184695 573 dbSNP
rs1369197230 574 dbSNP
rs1407351003 579 dbSNP
rs1054605631 587 dbSNP
rs1369268061 601 dbSNP
rs1241407881 602 dbSNP
rs913476776 603 dbSNP
rs1428556779 609 dbSNP
rs1412083990 610 dbSNP
rs771554318 615 dbSNP
rs1308149906 623 dbSNP
rs1169356163 628 dbSNP
rs576031194 629 dbSNP
rs1376910049 630 dbSNP
rs1199914256 632 dbSNP
rs1231304109 635 dbSNP
rs535091463 637 dbSNP
rs115326650 638 dbSNP
rs1204459266 641 dbSNP
rs890163654 646 dbSNP
rs1483957402 653 dbSNP
rs1196230318 665 dbSNP
rs1275197836 666 dbSNP
rs147941345 670 dbSNP
rs1344552462 687 dbSNP
rs1035560195 691 dbSNP
rs149003511 696 dbSNP
rs960115778 702 dbSNP
rs560676564 703 dbSNP
rs61933771 707 dbSNP
rs886049590 709 dbSNP
rs1410971608 719 dbSNP
rs1335878039 731 dbSNP
rs1330288798 733 dbSNP
rs1019951403 737 dbSNP
rs900231136 741 dbSNP
rs1401097831 742 dbSNP
rs994677140 746 dbSNP
rs968361592 754 dbSNP
rs1027457736 757 dbSNP
rs1409466304 758 dbSNP
rs1166114213 760 dbSNP
rs1388928828 762 dbSNP
rs3741706 763 dbSNP
rs546522439 764 dbSNP
rs1004841551 768 dbSNP
rs563030320 775 dbSNP
rs1264004330 776 dbSNP
rs1390421792 778 dbSNP
rs1327610492 779 dbSNP
rs1267863465 783 dbSNP
rs1385413386 787 dbSNP
rs932941058 788 dbSNP
rs1282905388 790 dbSNP
rs886049591 792 dbSNP
rs531761007 802 dbSNP
rs1337046949 803 dbSNP
rs971401494 804 dbSNP
rs1371925018 805 dbSNP
rs1454240101 806 dbSNP
rs1386231948 810 dbSNP
rs3741705 812 dbSNP
rs927399451 819 dbSNP
rs1410111446 825 dbSNP
rs1161334157 834 dbSNP
rs1472543031 836 dbSNP
rs561712809 839 dbSNP
rs759790974 840 dbSNP
rs944178771 854 dbSNP
rs1463697355 857 dbSNP
rs1264681663 860 dbSNP
rs1487402953 864 dbSNP
rs1216999580 876 dbSNP
rs957411580 884 dbSNP
rs527789517 885 dbSNP
rs1288360460 886 dbSNP
rs1228235939 889 dbSNP
rs918709880 892 dbSNP
rs931382406 904 dbSNP
rs775602388 910 dbSNP
rs1391456668 912 dbSNP
rs1247778255 922 dbSNP
rs1430846693 923 dbSNP
rs370826322 923 dbSNP
rs1287883724 924 dbSNP
rs1431206615 925 dbSNP
rs188422745 926 dbSNP
rs1321588158 929 dbSNP
rs563270962 930 dbSNP
rs1051372331 933 dbSNP
rs912803872 934 dbSNP
rs1057410986 936 dbSNP
rs570363246 940 dbSNP
rs944374166 942 dbSNP
rs1487085633 954 dbSNP
rs1038681488 955 dbSNP
rs544628288 958 dbSNP
rs530454845 960 dbSNP
rs900263651 962 dbSNP
rs552654863 966 dbSNP
rs1224110324 970 dbSNP
rs1339361825 971 dbSNP
rs1395581725 972 dbSNP
rs1294476820 978 dbSNP
rs759803844 987 dbSNP
rs1049283580 988 dbSNP
rs1407197557 993 dbSNP
rs1157056554 1004 dbSNP
rs999881318 1016 dbSNP
rs771772564 1019 dbSNP
rs953132805 1025 dbSNP
rs1318677385 1048 dbSNP
rs1427923354 1054 dbSNP
rs1171478411 1055 dbSNP
rs1370009055 1055 dbSNP
rs1005112520 1058 dbSNP
rs867695939 1059 dbSNP
rs1423572995 1060 dbSNP
rs539249597 1068 dbSNP
rs907103332 1077 dbSNP
rs1311957465 1082 dbSNP
rs1203559086 1085 dbSNP
rs1481825238 1085 dbSNP
rs912766313 1085 dbSNP
rs574046137 1093 dbSNP
rs1250234903 1095 dbSNP
rs1204834936 1096 dbSNP
rs1319797809 1097 dbSNP
rs1001490640 1099 dbSNP
rs972936398 1102 dbSNP
rs1345842739 1104 dbSNP
rs1285172533 1105 dbSNP
rs1273563297 1110 dbSNP
rs569827638 1113 dbSNP
rs750357426 1123 dbSNP
rs535711270 1127 dbSNP
rs1463549217 1131 dbSNP
rs1206400215 1133 dbSNP
rs931416553 1139 dbSNP
rs1175887328 1141 dbSNP
rs1249453959 1142 dbSNP
rs957360489 1143 dbSNP
rs1485920995 1145 dbSNP
rs570715105 1150 dbSNP
rs1180696723 1156 dbSNP
rs1472537585 1165 dbSNP
rs1251807516 1168 dbSNP
rs1177303629 1180 dbSNP
rs143835005 1188 dbSNP
rs1235394366 1190 dbSNP
rs967600196 1196 dbSNP
rs1324096750 1199 dbSNP
rs181144372 1200 dbSNP
rs895753562 1202 dbSNP
rs1010103810 1203 dbSNP
rs535020426 1210 dbSNP
rs904351544 1211 dbSNP
rs912821871 1212 dbSNP
rs1376993528 1219 dbSNP
rs557883538 1220 dbSNP
rs879660283 1226 dbSNP
rs942896407 1229 dbSNP
rs999915312 1231 dbSNP
rs1453445176 1232 dbSNP
rs1157259562 1241 dbSNP
rs1364881334 1242 dbSNP
rs148173527 1248 dbSNP
rs1410984737 1252 dbSNP
rs546064047 1252 dbSNP
rs953075280 1253 dbSNP
rs1009014886 1258 dbSNP
rs753682999 1271 dbSNP
rs1206626421 1272 dbSNP
rs1376975707 1279 dbSNP
rs1485384383 1289 dbSNP
rs930288590 1310 dbSNP
rs563072187 1312 dbSNP
rs1241084146 1314 dbSNP
rs886049592 1318 dbSNP
rs754735424 1319 dbSNP
rs868556317 1320 dbSNP
rs1385300689 1321 dbSNP
rs1045499752 1322 dbSNP
rs553138061 1326 dbSNP
rs778723641 1332 dbSNP
rs1386110866 1333 dbSNP
rs907134317 1337 dbSNP
rs918773681 1340 dbSNP
rs1226289603 1347 dbSNP
rs952835224 1353 dbSNP
rs1001438322 1366 dbSNP
rs1269639895 1375 dbSNP
rs984209400 1380 dbSNP
rs927337639 1384 dbSNP
rs1427764448 1386 dbSNP
rs75849603 1396 dbSNP
rs141823772 1406 dbSNP
rs993275140 1411 dbSNP
rs867481054 1417 dbSNP
rs1253729351 1426 dbSNP
rs893159174 1427 dbSNP
rs1213610260 1428 dbSNP
rs1223324909 1428 dbSNP
rs1011978362 1435 dbSNP
rs1361605874 1436 dbSNP
rs945994067 1442 dbSNP
rs1020379462 1443 dbSNP
rs1258782415 1444 dbSNP
rs967828272 1450 dbSNP
rs1180400296 1458 dbSNP
rs986995647 1465 dbSNP
rs11829893 1469 dbSNP
rs964204154 1472 dbSNP
rs757879681 1473 dbSNP
rs1366880289 1476 dbSNP
rs561749585 1478 dbSNP
rs930341218 1479 dbSNP
rs201800406 1487 dbSNP
rs984838878 1507 dbSNP
rs1357466869 1509 dbSNP
rs907618702 1512 dbSNP
rs1313428687 1514 dbSNP
rs1369810666 1519 dbSNP
rs940398352 1527 dbSNP
rs1281066981 1540 dbSNP
rs1019055818 1546 dbSNP
rs535780131 1547 dbSNP
rs777292174 1553 dbSNP
rs73299772 1560 dbSNP
rs1284550359 1561 dbSNP
rs1218257025 1568 dbSNP
rs547529064 1571 dbSNP
rs994441586 1580 dbSNP
rs564411083 1591 dbSNP
rs937156898 1596 dbSNP
rs1408819757 1601 dbSNP
rs1396772094 1609 dbSNP
rs760712439 1617 dbSNP
rs1468088315 1632 dbSNP
rs1281687885 1643 dbSNP
rs1482978401 1669 dbSNP
rs1481362202 1675 dbSNP
rs138863728 1676 dbSNP
rs536767042 1678 dbSNP
rs1011580649 1679 dbSNP
rs1034519561 1683 dbSNP
rs1201995287 1686 dbSNP
rs1323358026 1703 dbSNP
rs1042077300 1711 dbSNP
rs1300366429 1715 dbSNP
rs1264111741 1716 dbSNP
rs553557202 1719 dbSNP
rs184095558 1720 dbSNP
rs569796090 1723 dbSNP
rs1440856220 1725 dbSNP
rs1019694092 1726 dbSNP
rs964236468 1727 dbSNP
rs1330549528 1731 dbSNP
rs535755337 1743 dbSNP
rs1405140757 1745 dbSNP
rs1174267193 1756 dbSNP
rs1389550254 1759 dbSNP
rs1470813140 1762 dbSNP
rs1405713480 1765 dbSNP
rs1427727791 1770 dbSNP
rs996990002 1774 dbSNP
rs1354866867 1781 dbSNP
rs549248535 1782 dbSNP
rs1027259996 1783 dbSNP
rs1182021641 1785 dbSNP
rs1461022225 1788 dbSNP
rs953035630 1794 dbSNP
rs1205972202 1799 dbSNP
rs886049593 1804 dbSNP
rs984479454 1811 dbSNP
rs907565616 1814 dbSNP
rs1435447531 1819 dbSNP
rs1350812592 1820 dbSNP
rs1291453780 1828 dbSNP
rs977311169 1829 dbSNP
rs925838527 1830 dbSNP
rs1381631792 1838 dbSNP
rs1336910772 1840 dbSNP
rs1234392517 1844 dbSNP
rs1296226588 1854 dbSNP
rs565726345 1862 dbSNP
rs117540380 1882 dbSNP
rs1317637450 1885 dbSNP
rs1401189192 1889 dbSNP
rs1387297662 1890 dbSNP
rs1444014067 1892 dbSNP
rs1386106693 1895 dbSNP
rs1050710065 1897 dbSNP
rs981180459 1899 dbSNP
rs1474667936 1900 dbSNP
rs557920405 1910 dbSNP
rs1217189365 1911 dbSNP
rs1449251449 1913 dbSNP
rs1275668019 1914 dbSNP
rs937187942 1915 dbSNP
rs1219629030 1916 dbSNP
rs188145756 1917 dbSNP
rs537115316 1924 dbSNP
rs1221217848 1940 dbSNP
rs1315380749 1946 dbSNP
rs914504347 1958 dbSNP
rs1359657081 1963 dbSNP
rs1269356044 1966 dbSNP
rs947327061 1967 dbSNP
rs746214452 1968 dbSNP
rs1431134707 1971 dbSNP
rs1041633214 1972 dbSNP
rs1245205180 1975 dbSNP
rs903206895 1996 dbSNP
rs1008221783 1998 dbSNP
rs1194409990 2000 dbSNP
rs753796040 2002 dbSNP
rs1165745985 2008 dbSNP
rs897499496 2009 dbSNP
rs1041166322 2013 dbSNP
rs899895943 2021 dbSNP
rs1187500269 2025 dbSNP
rs997021173 2028 dbSNP
rs545883014 2030 dbSNP
rs1027531510 2031 dbSNP
rs952900125 2041 dbSNP
rs371844541 2042 dbSNP
rs1004908912 2046 dbSNP
rs1490063713 2049 dbSNP
rs181031835 2056 dbSNP
rs59570241 2068 dbSNP
rs1271768944 2072 dbSNP
rs1034958321 2077 dbSNP
rs1342125468 2083 dbSNP
rs961715401 2090 dbSNP
rs1404222465 2092 dbSNP
rs1404566845 2094 dbSNP
rs1346282902 2100 dbSNP
rs770083586 2105 dbSNP
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rs1354169983 2108 dbSNP
rs564219190 2120 dbSNP
rs958414785 2123 dbSNP
rs1412056977 2129 dbSNP
rs142078760 2136 dbSNP
rs1176387547 2140 dbSNP
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rs983659888 4751 dbSNP
rs1272387018 4755 dbSNP
rs1445688160 4755 dbSNP
rs1336334489 4757 dbSNP
rs1330805615 4758 dbSNP
rs1394402107 4759 dbSNP
rs1341557922 4760 dbSNP
rs1313506618 4763 dbSNP
rs1232987536 4765 dbSNP
rs1291683321 4769 dbSNP
rs1337210448 4771 dbSNP
rs1470710460 4777 dbSNP
rs1366128275 4780 dbSNP
rs771787589 4781 dbSNP
rs1210580762 4783 dbSNP
rs1283420824 4784 dbSNP
rs1360474990 4784 dbSNP
rs371717199 4784 dbSNP
rs551030446 4784 dbSNP
rs763738786 4784 dbSNP
rs764890128 4784 dbSNP
rs886049604 4784 dbSNP
rs886049605 4784 dbSNP
rs997661166 4785 dbSNP
rs1030592746 4786 dbSNP
rs1015083974 4798 dbSNP
rs1281259532 4802 dbSNP
rs1242541135 4806 dbSNP
rs963826910 4807 dbSNP
rs953577022 4811 dbSNP
rs986394143 4826 dbSNP
rs1293988091 4835 dbSNP
rs1416635515 4838 dbSNP
rs1217889445 4839 dbSNP
rs973485873 4840 dbSNP
rs916589209 4849 dbSNP
rs1263760375 4860 dbSNP
rs1161777668 4861 dbSNP
rs1485223275 4861 dbSNP
rs948038633 4861 dbSNP
rs185877446 4862 dbSNP
rs189692735 4863 dbSNP
rs182594940 4864 dbSNP
rs1157540982 4865 dbSNP
rs1260639534 4865 dbSNP
rs1214602277 4870 dbSNP
rs1052242524 4884 dbSNP
rs1405196668 4889 dbSNP
rs893626685 4892 dbSNP
rs1207775781 4893 dbSNP
rs1334087213 4900 dbSNP
rs1293818529 4912 dbSNP
rs750947961 4914 dbSNP
rs962390439 4917 dbSNP
rs1401901824 4921 dbSNP
rs1269884316 4923 dbSNP
rs1431782466 4925 dbSNP
rs1320858235 4939 dbSNP
rs946471408 4944 dbSNP
rs150461009 4954 dbSNP
rs1395935114 4965 dbSNP
rs1311438709 4975 dbSNP
rs557310545 4977 dbSNP
rs1167690057 4978 dbSNP
rs899505436 4983 dbSNP
rs918304546 4985 dbSNP
rs1420864413 4988 dbSNP
rs756589354 4991 dbSNP
rs1357645961 4999 dbSNP
rs776768150 5009 dbSNP
rs780435995 5012 dbSNP
rs536790966 5014 dbSNP
rs1245765659 5021 dbSNP
rs553495636 5028 dbSNP
rs1050747567 5030 dbSNP
rs1467865801 5032 dbSNP
rs1273783201 5034 dbSNP
rs917839321 5038 dbSNP
rs947998007 5040 dbSNP
rs749658744 5042 dbSNP
rs1272421776 5056 dbSNP
rs1315937420 5056 dbSNP
rs755240559 5076 dbSNP
rs903875437 5079 dbSNP
rs1341758573 5088 dbSNP
rs1000845400 5089 dbSNP
rs1440675822 5091 dbSNP
rs1225468190 5104 dbSNP
rs1328283121 5105 dbSNP
rs1445256808 5110 dbSNP
rs1286665655 5111 dbSNP
rs1169151240 5113 dbSNP
rs1410026946 5114 dbSNP
rs1052540580 5123 dbSNP
rs892516087 5128 dbSNP
rs1421292472 5132 dbSNP
rs1170414220 5135 dbSNP
rs997693727 5140 dbSNP
rs1485294469 5148 dbSNP
rs1015518757 5149 dbSNP
rs1195191009 5158 dbSNP
rs1456407920 5171 dbSNP
rs1232179937 5183 dbSNP
rs115534804 5190 dbSNP
rs995330963 5194 dbSNP
rs1276848663 5197 dbSNP
rs1233865146 5202 dbSNP
rs1023688854 5210 dbSNP
rs889290192 5214 dbSNP
rs545170280 5221 dbSNP
rs1008251931 5228 dbSNP
rs145387245 5229 dbSNP
rs962704131 5235 dbSNP
rs1442386632 5236 dbSNP
rs1355758920 5238 dbSNP
rs1310479662 5244 dbSNP
rs1433717037 5246 dbSNP
rs1395264546 5259 dbSNP
rs761804966 5267 dbSNP
rs1437562797 5269 dbSNP
rs569034973 5272 dbSNP
rs748279489 5287 dbSNP
rs915077533 5299 dbSNP
rs1210204263 5306 dbSNP
rs772303065 5309 dbSNP
rs991861382 5310 dbSNP
rs1214960124 5315 dbSNP
rs917787106 5320 dbSNP
rs1470887349 5323 dbSNP
rs1308406562 5331 dbSNP
rs947894129 5335 dbSNP
rs1225988260 5336 dbSNP
rs773406339 5348 dbSNP
rs981125530 5352 dbSNP
rs1290934964 5361 dbSNP
rs925201614 5365 dbSNP
rs1375729425 5367 dbSNP
rs1314331276 5379 dbSNP
rs745844457 5396 dbSNP
rs1381547502 5401 dbSNP
rs921061735 5414 dbSNP
rs544136097 5415 dbSNP
rs560553428 5424 dbSNP
rs1172217268 5434 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084044. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep3 HITS-CLIP data was present in GSM1084045. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep3 HITS-CLIP data was present in GSM1084046. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep4 HITS-CLIP data was present in GSM1084047. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep4 HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb HITS-CLIP data was present in GSM1084066. RNA binding protein: AGO2. Condition:CLIP_noemetine_SantaCruzAb HITS-CLIP data was present in GSM1084067. RNA binding protein: AGO2. Condition:CLIP_emetine_SantaCruzAb HITS-CLIP data was present in GSM1084068. RNA binding protein: AGO2. Condition:CLIP_noemetine_SigmaAb HITS-CLIP data was present in GSM1084069. RNA binding protein: AGO2. Condition:CLIP_emetine_SigmaAb HITS-CLIP data was present in GSM1084072. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep1_AbnovaAb HITS-CLIP data was present in GSM1084074. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep1_SantaCruzAb HITS-CLIP data was present in GSM1084076. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep1_SigmaAb HITS-CLIP data was present in GSM1084077. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep1_SigmaAb HITS-CLIP data was present in GSM1084079. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_AbnovaAb HITS-CLIP data was present in GSM1084080. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_SantaCruzAb HITS-CLIP data was present in GSM1084081. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_SantaCruzAb HITS-CLIP data was present in GSM1084082. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_SigmaAb HITS-CLIP data was present in GSM1084083. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_SigmaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084044
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep3
Location of target site ENST00000354534.6 | 3UTR | ACAUGUGGUGUGUGUGUGUGUGUGUGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084045
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep3
Location of target site ENST00000354534.6 | 3UTR | CAUGUGGUGUGUGUGUGUGUGUGUGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084046
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep4
Location of target site ENST00000354534.6 | 3UTR | CACAUGUGGUGUGUGUGUGUGUGUGUGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1084047
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep4
Location of target site ENST00000354534.6 | 3UTR | ACAUGUGGUGUGUGUGUGUGUGUGUGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000354534.6 | 3UTR | GGGUGGGUGUGCACAUGUGGUGUGUGUGUGUGUGUGUGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000354534.6 | 3UTR | CACAUGUGGUGUGUGUGUGUGUGUGUGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM1084066
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_SantaCruzAb
Location of target site ENST00000354534.6 | 3UTR | AUGUGGUGUGUGUGUGUGUGUGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM1084067
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_SantaCruzAb
Location of target site ENST00000354534.6 | 3UTR | ACAUGUGGUGUGUGUGUGUGUGUGUGAAGAAUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 9 for dataset GSM1084068
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_SigmaAb
Location of target site ENST00000354534.6 | 3UTR | ACAUGUGGUGUGUGUGUGUGUGUGUGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 10 for dataset GSM1084069
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_SigmaAb
Location of target site ENST00000354534.6 | 3UTR | CACAUGUGGUGUGUGUGUGUGUGUGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 11 for dataset GSM1084072
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep1_AbnovaAb
Location of target site ENST00000354534.6 | 3UTR | CACAUGUGGUGUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 12 for dataset GSM1084074
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep1_SantaCruzAb
Location of target site ENST00000354534.6 | 3UTR | AUGUGGUGUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 13 for dataset GSM1084076
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep1_SigmaAb
Location of target site ENST00000354534.6 | 3UTR | ACAUGUGGUGUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 14 for dataset GSM1084077
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep1_SigmaAb
Location of target site ENST00000354534.6 | 3UTR | ACAUGUGGUGUGUGUGUGUGUGUGUGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 15 for dataset GSM1084079
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_AbnovaAb
Location of target site ENST00000354534.6 | 3UTR | CACAUGUGGUGUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 16 for dataset GSM1084081
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_SantaCruzAb
Location of target site ENST00000354534.6 | 3UTR | GCACAUGUGGUGUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 17 for dataset GSM1084082
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep2_SigmaAb
Location of target site ENST00000354534.6 | 3UTR | ACAUGUGGUGUGUGUGUGUGUGUGUGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 18 for dataset GSM1084083
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_SigmaAb
Location of target site ENST00000354534.6 | 3UTR | ACAUGUGGUGUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
Click to see details
Click to see details
138 hsa-miR-412-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT005780 ACVR1C activin A receptor type 1C 1 1
MIRT062013 YOD1 YOD1 deubiquitinase 2 2
MIRT345112 ATXN7L3 ataxin 7 like 3 2 2
MIRT383735 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 2
MIRT396956 CELF1 CUGBP Elav-like family member 1 2 2
MIRT439280 XIAP X-linked inhibitor of apoptosis 1 1
MIRT439313 VAT1 vesicle amine transport 1 1 1
MIRT439375 TUBA1A tubulin alpha 1a 1 1
MIRT439418 TMOD1 tropomodulin 1 1 1
MIRT439503 SURF4 surfeit 4 1 1
MIRT439563 SON SON DNA binding protein 1 1
MIRT439598 SLC3A2 solute carrier family 3 member 2 1 1
MIRT439670 SETD1B SET domain containing 1B 1 1
MIRT439767 RMND5A required for meiotic nuclear division 5 homolog A 1 1
MIRT439922 PPL periplakin 1 1
MIRT439947 PLEKHA6 pleckstrin homology domain containing A6 1 1
MIRT439952 PLCB4 phospholipase C beta 4 1 1
MIRT439961 PKD1 polycystin 1, transient receptor potential channel interacting 1 1
MIRT440005 PEG3 paternally expressed 3 1 1
MIRT440061 OSBPL8 oxysterol binding protein like 8 1 1
MIRT440166 MYH14 myosin heavy chain 14 1 1
MIRT440276 MAPK8IP1 mitogen-activated protein kinase 8 interacting protein 1 1 1
MIRT440437 IPO13 importin 13 1 1
MIRT440441 INTS3 integrator complex subunit 3 1 1
MIRT440448 INS insulin 1 1
MIRT440461 IGF2R insulin like growth factor 2 receptor 1 1
MIRT440472 IARS isoleucyl-tRNA synthetase 1 1
MIRT440530 GUCY1A3 guanylate cyclase 1 soluble subunit alpha 1 1
MIRT440542 GOLGA2 golgin A2 1 1
MIRT440569 GIGYF1 GRB10 interacting GYF protein 1 1 1
MIRT440608 FTSJD2 cap methyltransferase 1 1 1
MIRT440750 EEF1A2 eukaryotic translation elongation factor 1 alpha 2 1 1
MIRT440781 DOT1L DOT1 like histone lysine methyltransferase 1 1
MIRT440804 DNAJA4 DnaJ heat shock protein family (Hsp40) member A4 1 1
MIRT440867 CSDE1 cold shock domain containing E1 1 1
MIRT440890 CPEB4 cytoplasmic polyadenylation element binding protein 4 1 1
MIRT440917 COL1A1 collagen type I alpha 1 chain 1 1
MIRT440967 CDH22 cadherin 22 1 1
MIRT440968 CDH2 cadherin 2 1 1
MIRT441024 CALR calreticulin 1 1
MIRT441278 ACTB actin beta 1 1
MIRT448421 TNFAIP3 TNF alpha induced protein 3 2 2
MIRT462833 BCL3 B-cell CLL/lymphoma 3 2 2
MIRT465062 TSR1 TSR1, ribosome maturation factor 2 2
MIRT476050 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT485318 MZT1 mitotic spindle organizing protein 1 2 4
MIRT493584 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 6
MIRT494567 BAK1 BCL2 antagonist/killer 1 2 2
MIRT497393 RALY RALY heterogeneous nuclear ribonucleoprotein 2 2
MIRT503250 ZNF257 zinc finger protein 257 2 10
MIRT503656 ZNF138 zinc finger protein 138 2 10
MIRT505882 RNF219 ring finger protein 219 2 2
MIRT507525 DSTN destrin, actin depolymerizing factor 2 4
MIRT510663 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 4
MIRT514682 ZNF701 zinc finger protein 701 2 4
MIRT515370 ZNF208 zinc finger protein 208 2 6
MIRT525237 KCNJ12 potassium voltage-gated channel subfamily J member 12 2 2
MIRT527963 MTAP methylthioadenosine phosphorylase 2 2
MIRT528482 STAMBPL1 STAM binding protein like 1 2 2
MIRT529909 C1orf64 steroid receptor associated and regulated protein 2 4
MIRT531558 SRD5A1 steroid 5 alpha-reductase 1 2 2
MIRT532234 KLF2 Kruppel like factor 2 2 4
MIRT532480 HOXA13 homeobox A13 2 2
MIRT535544 P2RY2 purinergic receptor P2Y2 2 2
MIRT547311 NR1D2 nuclear receptor subfamily 1 group D member 2 2 2
MIRT551795 ZNF117 zinc finger protein 117 2 4
MIRT554939 RAP1A RAP1A, member of RAS oncogene family 2 2
MIRT558171 EIF5A2 eukaryotic translation initiation factor 5A2 2 2
MIRT568771 LY6K lymphocyte antigen 6 family member K 2 2
MIRT570766 ZNF99 zinc finger protein 99 2 2
MIRT572405 MRPS14 mitochondrial ribosomal protein S14 2 2
MIRT573396 DLC1 DLC1 Rho GTPase activating protein 2 2
MIRT610403 RXRB retinoid X receptor beta 2 2
MIRT610886 SCN8A sodium voltage-gated channel alpha subunit 8 2 2
MIRT611197 TMEM105 transmembrane protein 105 2 2
MIRT611244 ZNF550 zinc finger protein 550 2 2
MIRT615669 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 4
MIRT617974 DOCK4 dedicator of cytokinesis 4 2 2
MIRT619150 ZNF326 zinc finger protein 326 2 2
MIRT619608 MKKS McKusick-Kaufman syndrome 2 2
MIRT621053 DGKD diacylglycerol kinase delta 2 2
MIRT623665 HRK harakiri, BCL2 interacting protein 2 2
MIRT624883 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT624939 MARCH2 membrane associated ring-CH-type finger 2 2 2
MIRT634198 TMOD2 tropomodulin 2 2 4
MIRT636727 AGO2 argonaute 2, RISC catalytic component 2 2
MIRT637741 POLR3K RNA polymerase III subunit K 2 2
MIRT638002 ZC3H13 zinc finger CCCH-type containing 13 2 2
MIRT640395 ZNF785 zinc finger protein 785 2 2
MIRT640505 ANTXR1 anthrax toxin receptor 1 2 2
MIRT641293 SLAMF1 signaling lymphocytic activation molecule family member 1 2 2
MIRT641863 STOML1 stomatin like 1 2 2
MIRT642600 C14orf180 chromosome 14 open reading frame 180 2 2
MIRT642895 CASP1 caspase 1 2 2
MIRT643967 FHL2 four and a half LIM domains 2 2 4
MIRT645237 KCTD12 potassium channel tetramerization domain containing 12 2 2
MIRT646621 CENPL centromere protein L 2 2
MIRT648620 CYB561A3 cytochrome b561 family member A3 2 2
MIRT648908 ZNF551 zinc finger protein 551 2 2
MIRT649439 HIBADH 3-hydroxyisobutyrate dehydrogenase 2 2
MIRT650637 LTF lactotransferrin 2 2
MIRT650971 STARD3NL STARD3 N-terminal like 2 2
MIRT651067 ZNF518B zinc finger protein 518B 2 4
MIRT652384 TMEM55A phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 2 2
MIRT653958 SEPN1 selenoprotein N 2 2
MIRT656885 KIF1C kinesin family member 1C 2 2
MIRT657965 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT658080 FOXR2 forkhead box R2 2 2
MIRT662570 IL2RA interleukin 2 receptor subunit alpha 2 2
MIRT663089 METTL10 EEF1A lysine methyltransferase 2 2 2
MIRT683705 ZNF195 zinc finger protein 195 2 2
MIRT683835 ZNF682 zinc finger protein 682 2 2
MIRT706811 APOL4 apolipoprotein L4 2 2
MIRT707575 DYNC2LI1 dynein cytoplasmic 2 light intermediate chain 1 2 2
MIRT708606 ZNF260 zinc finger protein 260 2 2
MIRT708859 TMSB4X thymosin beta 4, X-linked 2 2
MIRT709861 PDIK1L PDLIM1 interacting kinase 1 like 2 2
MIRT709987 RBM41 RNA binding motif protein 41 2 2
MIRT710098 KPNA5 karyopherin subunit alpha 5 2 2
MIRT710211 ENAH ENAH, actin regulator 2 2
MIRT710868 B3GALNT1 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 2 2
MIRT710986 SUSD5 sushi domain containing 5 2 2
MIRT711460 RNF145 ring finger protein 145 2 2
MIRT712302 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT713609 SYTL4 synaptotagmin like 4 2 2
MIRT713789 MAK16 MAK16 homolog 2 2
MIRT715480 MYO9B myosin IXB 2 2
MIRT716328 POU5F1 POU class 5 homeobox 1 2 2
MIRT717252 TMEM246 transmembrane protein 246 2 2
MIRT718077 CLIC5 chloride intracellular channel 5 2 2
MIRT718463 EED embryonic ectoderm development 2 2
MIRT718645 NKPD1 NTPase KAP family P-loop domain containing 1 2 2
MIRT718982 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 2
MIRT721078 RPS9 ribosomal protein S9 2 2
MIRT721419 SEC24A SEC24 homolog A, COPII coat complex component 2 2
MIRT721863 CENPJ centromere protein J 2 2
MIRT722492 PNKD paroxysmal nonkinesigenic dyskinesia 2 2
MIRT723391 CALN1 calneuron 1 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-412 Gemcitabine approved 60750 Northern blot Mz-ChA-1 human cholangiocarcinoma cell lines 16762633 2006 down-regulated
miR-412 Progesterone approved 5994 Microarray Breast cancer 22330642 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-412 Androstenedione 6128 NSC9563 sensitive cell line (MCF-7)
hsa-mir-412 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-412-3p Verapamil 2520 NSC272366 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-412-3p Doxorubicin 31703 NSC123127 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive High Ovarian Cancer cell line (A2780)
hsa-miR-412-3p Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (RKO)
hsa-miR-412-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (HCT-116)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive High Ovarian Cancer cell line (A2780)
hsa-miR-412-3p Doxorubicin 31703 NSC123127 approved sensitive High Anaplastic Thyroid Cancer tissue
hsa-miR-412-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM36)
hsa-miR-412-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM47)
hsa-miR-412-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM43)
hsa-miR-412-3p Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-412-3p Paclitaxel 36314 NSC125973 approved sensitive cell line (SKOV3)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-412-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (Panc1-GR1)
hsa-miR-412-3p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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