pre-miRNA Information
pre-miRNA hsa-mir-2115   
Genomic Coordinates chr3: 48316360 - 48316459
Description Homo sapiens miR-2115 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-2115-3p
Sequence 58| CAUCAGAAUUCAUGGAGGCUAG |79
Evidence Experimental
Experiments 454
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN31490809 22 COSMIC
COSN31579735 22 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs543123304 18 dbSNP
rs1450988157 21 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZNF621   
Synonyms -
Description zinc finger protein 621
Transcript NM_001098414   
Other Transcripts NM_198484   
Expression
Putative miRNA Targets on ZNF621
3'UTR of ZNF621
(miRNA target sites are highlighted)
>ZNF621|NM_001098414|3'UTR
   1 GCTTTATCTTGGCAGTCTTACGGCTCTTATGCCTAGCAAATCTCCAGCCTAATTTTATATATTTTTTTGAGAAAGGGTCT
  81 TGCTCTGTCACCCAGGCTAGAGTGCGGTGGTGTGATCTTGGCTCACTGCAACCTCCCCCTCCTGGGTTCAAGCGATTCTC
 161 CTCCTTCAGACTCTCGAATAGCTGGGATTACAGGCACGCCTCACCACGCCCAGCTAATTTCTGTATTTTTAGAAGAGATG
 241 GGGTTTCGCCATCTTGGCCAGGCTGGTCTCAAACACCTGACCTCAAGTGATCCGCCTGCCTTGGCCCCCCAAAGTGCTGG
 321 GATTACAGGAGTGAGCCACTGTGCCCAGCCTCCAACCTAATTTGAGTTTCATTTGTATTTTTTTCATCACCTTACATGTG
 401 TTAACAGCTGTTTCAACATAAACTCCATTATAATCTATATACATTTAAAGACCGTGTTTACATAATCTCTTCTGGGTAGA
 481 AAATGGAAATACTTAACCTTTGCATTGGTCCCTTTCAGGCTTGAACAACAGTGGCTGTATCTGCATCGTGGGGTTGCTGG
 561 TGGTAGAACACTTTGGTGTTAGGAAAGTTTGGAAAAGAGGATATCCCTGTATTAGGCCATTATGATTAGAGATAAGCAGC
 641 CTGGGAGAAACATACAAGACCTGTGGCTACTGGTAGAGAATTGGAATAAGCTTCCAACAATGGACTGTAGAGATTAATGG
 721 AGATTGTTTAGTGGGCCCATGGCTAGGTGGGGTATTAATACAGTTGAAGTTATGTTGCCCTTGGCACAGATCTTTGAGAA
 801 TCTCATACATCTGTGAAAAAGATAATGTGAAATAAACAGTAAAAAAAAAAAGTATGTTGATGGCAGTGAGAGTAATCATG
 881 TCTTTAAACGTGAAGTTTTTTTTTCTTTAGTTTTGCTCTTGATAGCTAGATGTTTCTTTTAACTTTTATTTCGTAAGTAA
 961 ATATACACAAAGGCATTCATCTTTGTTGAATCTGTTGTGCAGATTTTTCTTGATGAGCATTCTGTTTTTTTTTCTTTGTG
1041 AGCACTGGCTTCTATATTTTATTTCATATTTATGAATTATAAATATGAATTTAATTACTAAAGAAATAAAAATAATGGTG
1121 TAAAGCCAACTCGAGGGGAATCTGAATAAGCTTCCAAAATTTTTTTTTTTAAGAAATAAAGGGAGCTGTGTAGTGGGTCA
1201 GTGGCTAGGTAGGTTAGTGAAGTGGAATTTGGGGTTGCTCTTGGAAGTGGCCTTGATGAGGATCCTTTACAACTATTCAG
1281 AGGACTGTGTGAAGTAGTTACTGGAAAAAGAACTTGAATTATGCATTTATTGGCATTAATGTAAACAGTAAGTCCTAAGC
1361 TTTGATGGAAGGGTCCATACATTTTTTTTTTTTTTTTGCTGATGTTGCTATCTAGATGTTTCTCTATAGCAATTAATAGC
1441 AAAACCTTTACATTCTTGGTTTTTAAACTTTACCATGTGTCTGAATTACATAGTGTGCTTGTAAAAAGAAGAGTTTTCTC
1521 TCTTGCACAAATTCTGATTTTGGCTATCTGTGGTGATGGCCAGATCTTTAGCATGGACCATACTTTGAGAGATATGCTTC
1601 AAACAGAAAATGCCCACCCCTCCTCCTTTACCCAGCATAAACTCTATGGTTAATTCTTAAAATAATGCCTTACAGTCTCC
1681 ATTAACTCCCTTGCCCTTCTCTTGCTTTGTCATGCTCGCTTGGCAAAACCTCATCTCTGACTAAATGCAGTTCTTTGCCT
1761 TCTCTGTTCCTGCACCAAAAATGATCAGGAGAAAGCATATTACCAGGCTGAACTGTCACTTTAAATTCATGACCAGTAAC
1841 TTCATGGAGGCCCTTAACGTTTCCTGATGGTCATACTACAATTTTTGGAGTCCACTTAACTCCCCTGCTTTCCTAGGCCA
1921 CTACTTTATACTTTCTCTCTTCTGTAACTTCCAAAGCATCCCTCTCAGTTCTCATGCTCAGCTGATGGTTATGTTTCTGC
2001 CTTCGGCGAGAGAACAGCAAGCTCCAGAAAGTGGCTGCGCCTTCAGCCCCGTGCTAGAATGAGAACATATGGAGCCAACT
2081 TGAGTTCGGAAGGGCTGTGGCCACCTCGTTTCGCCCATCTACTTTTCACCTTGCCGTATCTGATTCTTCACCACCGTATT
2161 CTCAGTCACTTCCACTAAACAGTGCCAGTGTTTTAAGGTTCTGTCACACTCAGTAACCCACTTCTGGTTCCTCATTCCGT
2241 GTCAGTGATCAGCAGTAGACTGAAGAATCTACCTTAGATTTGCTCCATACTATTAATTAGCTTACAAAATGTCTAAGAGG
2321 AGCTAAGCTGGGATGCCACATAGGCAGAAGCCAGGAAAAATGACCAACCACAGAACCAAGTGGTTCCAGTGGAAACTCAG
2401 CAGCTGCTGGTGCCTGCTACTGGACTGCCACCCCCCATTGAAGAGACTGGACCACCAGGAAGGTCGTTTCACATTCTGTA
2481 GTAAAAATACCCCTACAATCATTTTGGTAGGGTCTTCTGTCTTCAGCCAGGGTGTACCTGCTCGGTGGGAGTTGGTTATA
2561 TATGTATGTCCAAGTTGCAGGGGCTTCTGGGAAATACAGGTTTTGGATTCTGCCTGGGAAGAGAGTCATAGTATGAAGAA
2641 GTCTGAAAATGGGGAAGGGATTTTCAGAATATGTTGAGCAGCTGTAAAATATCAGATACCCATTATAGGCATTGAAGGTT
2721 ACCTAAATGACAGAAGGATGCACTATATTCATGGGTAGGAAAGATTAGTTTCATCAAGATTTCAATTTTTATCAATTCAT
2801 AAATTAAAAACAATATAAAAATTCCAGAGGGGTGTGTGTATAGAGAGGCAAAGGACACAGAGTAGCTAACCTAGTTTTGA
2881 AGAACAAGATGGGGGGTTTTATGCTACCAGATATTATATACAATGATCATCAAACACAGAACAAAGCAAAAAACAAACTC
2961 CCCAAACCCAAGTTGAAACAAAAAAAACCCCCAGACTGTAATAGTATTATTATTATTTTTTAAGATGGAATCTTGCTCTG
3041 TTGCTCAGGCTGGAGTGCAGTGGTGCAATCTTGGCTCACTGCAACCTACACCTCCCGGGTTCAAGTGATTCTCTTGCCTC
3121 AGCCTCCTGAGTAGTGTGTGCCACCACGCCCAGCTAATTTTTTAATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCA
3201 GGCTGGTCTTGAACTCCTGGCAGCCTCAAGTGATCCACCCACCTCGGTCTCCCAAAGTGTTGGGATTACAGGCGTGAGCC
3281 ACTGCACCTGGCCTGTAACATGATTTGCTGAAATTTTTAAAAATCTTAAATAATGTACTGTTTAGAAATATACATATTTT
3361 ATACAAAATTATAAAGAAAGCATAGAGAGGTAAGCATTAGTGGCACAGCTGAGAAAATATAAAAGGTAGTTCTGTCTCTA
3441 TCCTGTCTCCTTTATTCTGCTACTGCTCTCATTCTGTCTCATCCCAGGAATCCAGTCCCAAGTGCTGCCTGCCAATCGTC
3521 CAGCACCCTCCACCTTTGCCACCTATTTCTTGTTGTAAAACAGATGTTTGTTTCTAAAATATAATGAATTAATGATTATC
3601 AAAGTACAGGCATACCTCATTTTATTGCAGTTTGTTTTATTGTGTCTTGCGGATATTGCATTTTTTACAAACTGAAGGTT
3681 TGTGGCAGGCCTGTGTTGAGCAAGACTATCAGTGCCATTTTTTTTCAACAGCATGTGCTCATTTCATTTTTCTGTGTCTT
3761 ACACAGAAACTTAAAATATTTCAAACTTTTCATTATATGTGTTTTGGTGATTAGTGACTTTTATGTTTCTATTGTAATTG
3841 TTTTGGGGTGCCACAGACTGCATCCATCTAAGACAGTGAGCTTAGTTGATGTGTGTGTGTGTGTTCTGATTACTCCACTA
3921 ACTGATGGTTCCCCATCTCTCTCCCTCTCCTCAGACCTCACTATTCTCTCAGACACAACAGTATTGAAATTAGACCAATT
4001 GATAACCTTACAAACACCTTTAAGTGTTTAAGTGAAAAAGTCACATGCCTCTCACTTTAAATCAAAAGCTAGAAATGATT
4081 AAGCTTAGTGAGGAAGGCTAATGTCAACAGCTGAGATAGGCCAAAAGCTAGACTGCTTCTGCCAAACAGTCAAGTTGTGA
4161 ATGCAAAAGAAAAGTTCTTGAAGGAAATGAAAAGTACTTCTCCAGGGAACACATGAACGATAATAAAGTGGCCAGGTGCA
4241 GTGGCTGACACCTAGAATCCCAGCACTTCGGGGAGCCAAAGCGGGAGGATCCCCTGAAGCCAGGAGTCCGAGACCAGCTT
4321 GGGCCACAAAGTGAGACCCCTGTCTCTACAAAAAATTAAAAATTTAGCTGGGTGTGGTTGTGCATGCCTGTAGTCCGATC
4401 TACTTGGGAGGCTGAAGTGAGAGGATCCCTTTAGCCAGGGAGTTCGAGACTGCAGTGAGCTATGATTGTGCCACTGCACT
4481 CTAGCCTGTGTGACAGAATGAAACCAAAAAAAGTGAAACAGCATTATTACTGATATGGAGAAAGTTTTAGGGGTCTGGAT
4561 CAAACCAACCACAAATTCCCTTAAGCCAAAACCTAATCCAGAGCAAGGCCATAACTGCCATTGTATGAAGGCTGAGAGAA
4641 GTGAGGAAGCTGCAGGAAAGTTTGAAGCTAGCAGAGGTTGGTTCATGAGGTTTAAGAAGTCATCTTATCATAAAAGTGCA
4721 AGGTGAAGCAGCAAGTGCTGGTGTAGAAGCTGTAGCAATTTATCCAGATCTAGCTAAGTTAATTGATGAAGTTGCTACAC
4801 CACGAGATTTTCAGTGTATTCCAAACAGCCTTCTTTTGGAAGAAGAAACCATCTAGGACTTTCATGGAGAAGAGAAGTTA
4881 ATCCCTGGCTTAAAAGCATCAAAGGACAGCTCGTCTCTCTTGTTAGGGGTTCATGCAGCTGGTAACTTTAAGTTGAAGCC
4961 AATGCTCATTTACCATTCAGAAAATCCTAGGGCCCATAAGAATTATGCTAAATCCACTCTGCCTGTGCTCTAGAAATGGA
5041 AGATCAAAGCCTGGATGACAGCACATCTGTTTACAGCATGGATTACTGAATATTTTAAGCCCACTGTTGAGACCTACTAA
5121 ATATTAGGAAAAAAGAATTCTGTCAGGTGTGGTGGCTCACACTTGTAATCCCAACACTTTGGGAGGCCAAGGCAGGTGGA
5201 TCAGTTGAGGTCAGGAGTTTGAGACCAGCCTGACCAACATGGAGAAACCCTATCTCTACTAAAAATACAAAAATTAGCTG
5281 GATGTGGTGGTGTGTGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAATCCAGAGGCAGAGGTT
5361 GCAGTGAGCTGAGGTTGCACCACTGTGCTTCAGCCTGGGTAACAGAGTGAGACTGTCTCAAAAAAAAAAAAAATTTAGTT
5441 CCAAATATTACTGCTCGTTGATAATGTGTCTGGTCACCCAAGAGTTCTGATGGAGATGTACAAAGAGATTAATGTTTTTA
5521 TGTCTGCTAAACAACATCCATTCTGCAGGATCCATTACTCCATGGGTCAAGGAGTAATTTTGACTTTCAAGTATTATTTA
5601 AGGAATACATTTTGTAAGGCTGTGGCTGCCATAGTGGTTGTTCTGTACAAAGTAACTTGAAAACCTTCTGGAAAGGATTC
5681 ATCATTCTAGATGCCATTAAGGACATTTGTGATTCATGGGAGAAGGTCAAAATATCAACATTAACAGGAGTTCAGAAGAC
5761 ATTGACCTCAACCCTGATGGATGATCTTGAGGGGTTCAAGACTTCAGTGGACGAAGTAACTGCAGATGTGGTGGAAATAG
5841 CAAGATAACTAGACTTAGAAGTGGAACCTGCATATGTGACTGAATTGCTGCAATCTCATGATAAAACGTGAACAAATGAG
5921 GAGTTGCTTCTAATATAAGAGCCACAAAAGTGGTTTCTTGAGATGGAAACTACTCCTGGTGAAGATCCTGTGACCATTGT
6001 TGAAATGACAACAAAGGACTTAGAATATTACATAAACTTAGTTGATAAAACAGCAGCAGAGTTTGAGAGGATTGACTTCA
6081 ATTTTGAAGAATGTTCCACTGTGGGTAAAAGGCTATCCAACAGCAACACATGCTACAGATAAATCTTTCGGAAAGGAAGA
6161 GTCAGTTGATGTTGCAGCCTTCCTTGTTGTCTCATTTAAAGAAATCTCTAGAGCCACACTAACCTTCAGCAACCACCACA
6241 CCGATCATTCAGCAGCCATCAACAGTGAGGCAAGACTGTCTTCCAGCAACAAAGACTCACTGAAGACTTAGATTATCGTT
6321 AACATCTTTTAGCAATAAAATATTTTTAAATTAAAGTATGTACATTGTCAGATATAATGCTATTGCAAACTTAATAGACT
6401 ATAATATAGATTAAACATAACTTTTATAGGTACTGGAAAATAAAAATAATTGTGTGACTCCCTTTATTGTGTTAAACATT
6481 TTATTACAGTTGTCTGGAAGCAAACCTGCAATATCTCCAAGATATGCCTGTATTTTTCAAAATGTGGTCTTTTAACATTG
6561 CTATGAAGTTTATCAGTAATAATATCTTATTTCATGGTTGTCCAGAAGTTACATAACTTGTCTTAATCTAAAAATCATAT
6641 CATTTAAAAAGCCTGATGATTTAATATTTTTCATAAAGAAAACTTTTGACAATTTGTTTTTAAG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gaUCGG-AGGUACUUAAGACUAc 5'
            :|:|  ||| ||:||||||| 
Target 5' ctGGTCACCCAAGAGTTCTGATg 3'
5470 - 5492 164.00 -24.40
2
miRNA  3' gaucGGAGGUACUUAAGACUAc 5'
              |:| ||  ||||||||| 
Target 5' ctctCTTGCACAAATTCTGATt 3'
1518 - 1539 162.00 -11.90
3
miRNA  3' gauCGGAGGUACUUAAGACUAc 5'
             |: | ::|| :||||||| 
Target 5' tgtGTGTGTGTGTGTTCTGATt 3'
3890 - 3911 155.00 -9.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30534455 52 COSMIC
COSN30126687 106 COSMIC
COSN22623795 156 COSMIC
COSN9550839 179 COSMIC
COSN29327665 356 COSMIC
COSN1949385 455 COSMIC
COSN31521880 810 COSMIC
COSN29045774 852 COSMIC
COSN8489211 892 COSMIC
COSN29710543 905 COSMIC
COSN31563433 921 COSMIC
COSN26072195 947 COSMIC
COSN26640737 979 COSMIC
COSN22821945 1034 COSMIC
COSN9550840 1161 COSMIC
COSN20098329 1398 COSMIC
COSN22081762 1690 COSMIC
COSN30232931 2054 COSMIC
COSN32102261 2108 COSMIC
COSN28202065 2539 COSMIC
COSN19107792 2567 COSMIC
COSN29635394 3904 COSMIC
COSN8925590 4612 COSMIC
COSN22216704 4827 COSMIC
COSN28314958 5287 COSMIC
COSN7608715 5518 COSMIC
COSN15235362 5892 COSMIC
COSN26242921 5909 COSMIC
COSN32173303 6060 COSMIC
COSN20855616 6151 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs771115131 2 dbSNP
rs1472253811 4 dbSNP
rs1160999685 7 dbSNP
rs1335513825 8 dbSNP
rs1425110295 12 dbSNP
rs1435662227 13 dbSNP
rs1465653573 14 dbSNP
rs907052737 16 dbSNP
rs1156645064 20 dbSNP
rs754801804 20 dbSNP
rs1397947649 21 dbSNP
rs1397564646 22 dbSNP
rs754808040 23 dbSNP
rs1340155717 24 dbSNP
rs774449224 26 dbSNP
rs1280296012 27 dbSNP
rs780989307 31 dbSNP
rs1218033298 47 dbSNP
rs566743791 59 dbSNP
rs1420103435 62 dbSNP
rs893204478 73 dbSNP
rs1207205604 77 dbSNP
rs930475252 86 dbSNP
rs1266409256 90 dbSNP
rs1161872099 92 dbSNP
rs538593099 99 dbSNP
rs1376386851 100 dbSNP
rs1319578663 101 dbSNP
rs879263155 106 dbSNP
rs551947553 107 dbSNP
rs1375526411 108 dbSNP
rs1367240361 109 dbSNP
rs1318519525 110 dbSNP
rs185912718 111 dbSNP
rs1391093257 116 dbSNP
rs1159646345 121 dbSNP
rs903177210 125 dbSNP
rs778888534 136 dbSNP
rs568859511 138 dbSNP
rs1040268716 139 dbSNP
rs750292452 140 dbSNP
rs999497114 144 dbSNP
rs13086983 154 dbSNP
rs575136514 155 dbSNP
rs190721563 156 dbSNP
rs975582924 158 dbSNP
rs533768778 159 dbSNP
rs1205237613 160 dbSNP
rs138966355 161 dbSNP
rs969592221 162 dbSNP
rs982733025 171 dbSNP
rs1331630640 174 dbSNP
rs577464000 176 dbSNP
rs1384915000 177 dbSNP
rs529063529 179 dbSNP
rs1430651942 195 dbSNP
rs971746443 195 dbSNP
rs920337592 197 dbSNP
rs373342345 198 dbSNP
rs1350214128 199 dbSNP
rs546183444 208 dbSNP
rs560820795 209 dbSNP
rs940341019 211 dbSNP
rs1251009186 214 dbSNP
rs1481098876 225 dbSNP
rs1179269018 248 dbSNP
rs1271793845 249 dbSNP
rs910336873 252 dbSNP
rs1345605648 257 dbSNP
rs1265725654 260 dbSNP
rs981792832 264 dbSNP
rs944573265 269 dbSNP
rs1344564056 271 dbSNP
rs1040241124 276 dbSNP
rs903138513 277 dbSNP
rs1395149225 282 dbSNP
rs1326900006 292 dbSNP
rs935317080 293 dbSNP
rs76551182 294 dbSNP
rs576727313 295 dbSNP
rs1462201983 297 dbSNP
rs1473343852 305 dbSNP
rs780121591 305 dbSNP
rs1011376823 307 dbSNP
rs184243754 310 dbSNP
rs562140539 311 dbSNP
rs1257670281 312 dbSNP
rs1003742100 313 dbSNP
rs1268484490 313 dbSNP
rs1230049256 317 dbSNP
rs1331453613 319 dbSNP
rs1035250619 322 dbSNP
rs1278059771 328 dbSNP
rs527816427 333 dbSNP
rs1008217272 337 dbSNP
rs1373246538 339 dbSNP
rs547761115 340 dbSNP
rs1226224100 344 dbSNP
rs962325547 356 dbSNP
rs1406028708 362 dbSNP
rs779882479 366 dbSNP
rs564368729 372 dbSNP
rs1459210758 391 dbSNP
rs75289541 397 dbSNP
rs997431458 403 dbSNP
rs1472930231 407 dbSNP
rs1369643588 424 dbSNP
rs1206894024 430 dbSNP
rs1027289557 431 dbSNP
rs1460794396 438 dbSNP
rs1264047453 443 dbSNP
rs187572578 453 dbSNP
rs1027143392 454 dbSNP
rs72866458 455 dbSNP
rs1283300236 456 dbSNP
rs754526926 458 dbSNP
rs1448241445 460 dbSNP
rs986260469 463 dbSNP
rs910314530 466 dbSNP
rs1418168036 470 dbSNP
rs1243916720 477 dbSNP
rs565787990 498 dbSNP
rs1172158153 502 dbSNP
rs537629831 508 dbSNP
rs981109577 512 dbSNP
rs1318101033 513 dbSNP
rs1326366955 521 dbSNP
rs1392485647 536 dbSNP
rs61569592 538 dbSNP
rs568140989 542 dbSNP
rs1390706047 546 dbSNP
rs958618540 548 dbSNP
rs537811530 549 dbSNP
rs751215144 552 dbSNP
rs553682296 560 dbSNP
rs1452370631 567 dbSNP
rs914448317 573 dbSNP
rs570363643 575 dbSNP
rs145904059 586 dbSNP
rs934612277 588 dbSNP
rs1358740455 594 dbSNP
rs1216537530 600 dbSNP
rs947186621 602 dbSNP
rs1360529733 603 dbSNP
rs1310909127 605 dbSNP
rs1269948918 611 dbSNP
rs1334583168 614 dbSNP
rs1054310164 620 dbSNP
rs1234242475 624 dbSNP
rs1300979354 638 dbSNP
rs1423610189 641 dbSNP
rs915190177 646 dbSNP
rs754627515 649 dbSNP
rs1169956290 653 dbSNP
rs1275470593 655 dbSNP
rs1408098703 657 dbSNP
rs1463891403 661 dbSNP
rs192779530 670 dbSNP
rs1191530245 683 dbSNP
rs944038318 685 dbSNP
rs369671696 687 dbSNP
rs1045529455 696 dbSNP
rs1197472445 699 dbSNP
rs1485935489 700 dbSNP
rs1490255444 701 dbSNP
rs1187870193 707 dbSNP
rs539850531 716 dbSNP
rs1474688885 727 dbSNP
rs1306248974 731 dbSNP
rs1272997482 741 dbSNP
rs1003709030 744 dbSNP
rs1220171363 745 dbSNP
rs879140526 751 dbSNP
rs1165305011 753 dbSNP
rs1326014251 762 dbSNP
rs1419768138 773 dbSNP
rs899823096 781 dbSNP
rs1317627706 784 dbSNP
rs763374826 789 dbSNP
rs1439451674 793 dbSNP
rs1048606187 806 dbSNP
rs898000962 811 dbSNP
rs182876432 814 dbSNP
rs1355010755 819 dbSNP
rs1426887210 822 dbSNP
rs1027924414 827 dbSNP
rs1175487859 830 dbSNP
rs1415645075 838 dbSNP
rs1295491856 840 dbSNP
rs1014646156 841 dbSNP
rs1480217202 841 dbSNP
rs570182445 841 dbSNP
rs1232375582 856 dbSNP
rs1211363949 867 dbSNP
rs542425926 876 dbSNP
rs747682284 890 dbSNP
rs546375842 891 dbSNP
rs1329394572 895 dbSNP
rs1308767348 896 dbSNP
rs547685929 896 dbSNP
rs951771825 897 dbSNP
rs137868968 898 dbSNP
rs1017754149 905 dbSNP
rs1319283327 905 dbSNP
rs965861454 906 dbSNP
rs1254792781 910 dbSNP
rs1485102076 911 dbSNP
rs991429343 913 dbSNP
rs1188299946 916 dbSNP
rs572495849 919 dbSNP
rs762293766 925 dbSNP
rs1457627085 933 dbSNP
rs1468456147 935 dbSNP
rs144367531 937 dbSNP
rs1408578453 953 dbSNP
rs767565102 954 dbSNP
rs541166949 962 dbSNP
rs773290949 966 dbSNP
rs1407282443 976 dbSNP
rs1182547022 980 dbSNP
rs1463022268 993 dbSNP
rs1241885248 996 dbSNP
rs955877366 1004 dbSNP
rs1465578284 1011 dbSNP
rs990004427 1011 dbSNP
rs187053996 1020 dbSNP
rs946687867 1024 dbSNP
rs1312774200 1025 dbSNP
rs944170040 1025 dbSNP
rs977238580 1026 dbSNP
rs1247602809 1030 dbSNP
rs533186464 1031 dbSNP
rs932628535 1033 dbSNP
rs1435728944 1034 dbSNP
rs1315062634 1035 dbSNP
rs1334315957 1039 dbSNP
rs1286920225 1044 dbSNP
rs1451840669 1049 dbSNP
rs1344871271 1067 dbSNP
rs1441879636 1078 dbSNP
rs1446581172 1080 dbSNP
rs867544609 1081 dbSNP
rs1383918858 1101 dbSNP
rs1183458209 1111 dbSNP
rs1450663651 1116 dbSNP
rs926690830 1120 dbSNP
rs543442107 1121 dbSNP
rs1485330337 1129 dbSNP
rs149452681 1133 dbSNP
rs1056564406 1136 dbSNP
rs1224069812 1155 dbSNP
rs1356562417 1158 dbSNP
rs1328156797 1160 dbSNP
rs888673342 1160 dbSNP
rs897971437 1160 dbSNP
rs1293132701 1161 dbSNP
rs1381488583 1175 dbSNP
rs1361512266 1180 dbSNP
rs1304050970 1189 dbSNP
rs993677971 1190 dbSNP
rs1426805691 1194 dbSNP
rs1217981097 1198 dbSNP
rs1049763788 1202 dbSNP
rs1277569711 1206 dbSNP
rs940197265 1210 dbSNP
rs531541194 1217 dbSNP
rs888060428 1254 dbSNP
rs1007635782 1255 dbSNP
rs1282072451 1261 dbSNP
rs1435751631 1262 dbSNP
rs547978862 1280 dbSNP
rs191826951 1283 dbSNP
rs1267503269 1286 dbSNP
rs1205298394 1296 dbSNP
rs997185724 1303 dbSNP
rs1249603546 1314 dbSNP
rs4264703 1316 dbSNP
rs527342223 1332 dbSNP
rs779632245 1349 dbSNP
rs1226412673 1351 dbSNP
rs1031403631 1353 dbSNP
rs1312486122 1357 dbSNP
rs1284984802 1369 dbSNP
rs955846187 1376 dbSNP
rs990030210 1380 dbSNP
rs1343917509 1381 dbSNP
rs1491300977 1381 dbSNP
rs1166598828 1382 dbSNP
rs1491511296 1382 dbSNP
rs397875965 1382 dbSNP
rs5848568 1382 dbSNP
rs869121463 1382 dbSNP
rs1012559785 1384 dbSNP
rs1394530434 1386 dbSNP
rs1179068372 1393 dbSNP
rs1479232414 1398 dbSNP
rs1435457668 1399 dbSNP
rs1175633477 1400 dbSNP
rs1394539349 1402 dbSNP
rs1409620659 1403 dbSNP
rs1329884457 1405 dbSNP
rs1356710310 1407 dbSNP
rs1439326999 1408 dbSNP
rs1303380900 1427 dbSNP
rs1247806987 1430 dbSNP
rs1195095135 1441 dbSNP
rs914470677 1453 dbSNP
rs1264737941 1457 dbSNP
rs143897202 1468 dbSNP
rs1321661243 1476 dbSNP
rs3924444 1481 dbSNP
rs1276132895 1486 dbSNP
rs977326447 1488 dbSNP
rs926602416 1491 dbSNP
rs1031540584 1492 dbSNP
rs1326955078 1494 dbSNP
rs1391278497 1500 dbSNP
rs539416686 1505 dbSNP
rs1339076259 1510 dbSNP
rs1468621467 1519 dbSNP
rs556227075 1521 dbSNP
rs992214563 1536 dbSNP
rs1158718165 1538 dbSNP
rs976891459 1545 dbSNP
rs919368732 1546 dbSNP
rs929440378 1547 dbSNP
rs184375779 1549 dbSNP
rs1445146002 1556 dbSNP
rs1049270755 1579 dbSNP
rs888019853 1585 dbSNP
rs1460657717 1588 dbSNP
rs943600091 1589 dbSNP
rs1205894866 1590 dbSNP
rs754754741 1594 dbSNP
rs536197544 1596 dbSNP
rs1238478919 1604 dbSNP
rs1384163249 1606 dbSNP
rs910144065 1610 dbSNP
rs1451102066 1623 dbSNP
rs555882485 1627 dbSNP
rs1195513356 1632 dbSNP
rs574215032 1636 dbSNP
rs906728403 1643 dbSNP
rs1031370968 1644 dbSNP
rs891584470 1646 dbSNP
rs1168772028 1647 dbSNP
rs1181619423 1658 dbSNP
rs1443961181 1670 dbSNP
rs758284334 1672 dbSNP
rs939503857 1674 dbSNP
rs1195108489 1687 dbSNP
rs572561166 1688 dbSNP
rs1448931008 1701 dbSNP
rs1282488365 1710 dbSNP
rs1011814995 1713 dbSNP
rs1056898029 1718 dbSNP
rs894193651 1719 dbSNP
rs1244354922 1723 dbSNP
rs541480444 1725 dbSNP
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rs1271115209 1730 dbSNP
rs970296396 1734 dbSNP
rs557949855 1736 dbSNP
rs76485302 1738 dbSNP
rs1035619721 1745 dbSNP
rs1324318128 1749 dbSNP
rs746546604 1754 dbSNP
rs1405198812 1760 dbSNP
rs756865456 1770 dbSNP
rs1031993026 1776 dbSNP
rs965253667 1779 dbSNP
rs1420196419 1784 dbSNP
rs1169412706 1785 dbSNP
rs919339599 1786 dbSNP
rs1324246850 1789 dbSNP
rs929410829 1793 dbSNP
rs985288195 1796 dbSNP
rs909343299 1799 dbSNP
rs1271090004 1800 dbSNP
rs553635081 1810 dbSNP
rs954095951 1817 dbSNP
rs543403478 1823 dbSNP
rs563389717 1824 dbSNP
rs1274406545 1825 dbSNP
rs1319590723 1830 dbSNP
rs1337794898 1835 dbSNP
rs780966109 1841 dbSNP
rs1405139159 1853 dbSNP
rs909925312 1858 dbSNP
rs376100550 1859 dbSNP
rs973040446 1860 dbSNP
rs928179997 1861 dbSNP
rs1418466809 1878 dbSNP
rs902134626 1879 dbSNP
rs932972197 1888 dbSNP
rs796432915 1904 dbSNP
rs1480874277 1905 dbSNP
rs1431797171 1907 dbSNP
rs1215555695 1919 dbSNP
rs939555257 1924 dbSNP
rs1488160769 1928 dbSNP
rs79964768 1929 dbSNP
rs1207186857 1934 dbSNP
rs891468422 1940 dbSNP
rs1011283282 1943 dbSNP
rs1021808561 1945 dbSNP
rs905667053 1946 dbSNP
rs1257792026 1957 dbSNP
rs189082783 1965 dbSNP
rs1325224435 1966 dbSNP
rs1281052009 1974 dbSNP
rs1035587031 1981 dbSNP
rs959983748 1983 dbSNP
rs777510278 1989 dbSNP
rs771332737 1990 dbSNP
rs992152032 1993 dbSNP
rs146843407 1994 dbSNP
rs1439881533 2005 dbSNP
rs1353899322 2006 dbSNP
rs1042807527 2008 dbSNP
rs1026286443 2009 dbSNP
rs774583047 2011 dbSNP
rs1403643304 2012 dbSNP
rs748629843 2013 dbSNP
rs776779288 2022 dbSNP
rs1432846101 2029 dbSNP
rs1408762104 2030 dbSNP
rs113034592 2035 dbSNP
rs1381120254 2039 dbSNP
rs1469031646 2040 dbSNP
rs964895413 2045 dbSNP
rs151037785 2047 dbSNP
rs771559764 2047 dbSNP
rs998038902 2050 dbSNP
rs974907597 2051 dbSNP
rs923515854 2052 dbSNP
rs933539903 2060 dbSNP
rs1053299951 2067 dbSNP
rs912874082 2070 dbSNP
rs1315568499 2071 dbSNP
rs1454527350 2073 dbSNP
rs961374207 2075 dbSNP
rs947053938 2079 dbSNP
rs1335300563 2080 dbSNP
rs1346068685 2081 dbSNP
rs1042798855 2088 dbSNP
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rs551410199 2099 dbSNP
rs772488966 2103 dbSNP
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rs193091903 2105 dbSNP
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rs533098224 2112 dbSNP
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rs1399548900 5233 dbSNP
rs1468321747 5240 dbSNP
rs1276372341 5244 dbSNP
rs1314518162 5252 dbSNP
rs1234560758 5253 dbSNP
rs1206208967 5255 dbSNP
rs1255876672 5266 dbSNP
rs1435522207 5274 dbSNP
rs974194122 5276 dbSNP
rs1343336536 5277 dbSNP
rs1219170329 5279 dbSNP
rs1271723895 5286 dbSNP
rs920056822 5291 dbSNP
rs552559089 5297 dbSNP
rs780183960 5302 dbSNP
rs985650119 5315 dbSNP
rs1233213024 5324 dbSNP
rs554218160 5337 dbSNP
rs912846483 5339 dbSNP
rs1377386043 5348 dbSNP
rs1314199390 5362 dbSNP
rs1444677151 5374 dbSNP
rs943713218 5386 dbSNP
rs1352808193 5406 dbSNP
rs141121230 5413 dbSNP
rs1257838326 5418 dbSNP
rs1381352451 5420 dbSNP
rs77552991 5420 dbSNP
rs796522089 5420 dbSNP
rs917431066 5420 dbSNP
rs74744508 5421 dbSNP
rs1319195311 5422 dbSNP
rs923637720 5434 dbSNP
rs950186129 5435 dbSNP
rs537309109 5438 dbSNP
rs936377456 5445 dbSNP
rs1239433902 5449 dbSNP
rs1210294328 5454 dbSNP
rs550876722 5455 dbSNP
rs1486370101 5456 dbSNP
rs1046195126 5457 dbSNP
rs1487246985 5458 dbSNP
rs1354106018 5478 dbSNP
rs926318503 5479 dbSNP
rs769021853 5482 dbSNP
rs1267562458 5488 dbSNP
rs1371528124 5490 dbSNP
rs1279191844 5491 dbSNP
rs1448772267 5494 dbSNP
rs1357466035 5496 dbSNP
rs937667558 5507 dbSNP
rs1168194422 5508 dbSNP
rs1361545242 5530 dbSNP
rs567481043 5539 dbSNP
rs796511087 5542 dbSNP
rs186819491 5549 dbSNP
rs893469484 5550 dbSNP
rs1406707224 5555 dbSNP
rs1182101476 5563 dbSNP
rs894952394 5569 dbSNP
rs1254817754 5571 dbSNP
rs945308442 5575 dbSNP
rs766361196 5581 dbSNP
rs1262261238 5585 dbSNP
rs1213468393 5590 dbSNP
rs1316132729 5592 dbSNP
rs79947432 5600 dbSNP
rs906488881 5616 dbSNP
rs1336996573 5623 dbSNP
rs1017646392 5629 dbSNP
rs1363351875 5632 dbSNP
rs900562738 5633 dbSNP
rs1002869520 5637 dbSNP
rs1015977804 5640 dbSNP
rs897158337 5641 dbSNP
rs995975226 5647 dbSNP
rs1369930871 5648 dbSNP
rs1028111447 5657 dbSNP
rs1414996064 5660 dbSNP
rs1027042371 5672 dbSNP
rs191624435 5676 dbSNP
rs538348949 5678 dbSNP
rs1019813887 5685 dbSNP
rs1485397155 5690 dbSNP
rs1341567055 5692 dbSNP
rs1247105313 5693 dbSNP
rs371595507 5694 dbSNP
rs1220976317 5696 dbSNP
rs1470038808 5697 dbSNP
rs1024533570 5703 dbSNP
rs1232679337 5708 dbSNP
rs1308168571 5721 dbSNP
rs1298309858 5749 dbSNP
rs182838609 5751 dbSNP
rs1361660767 5752 dbSNP
rs35999080 5756 dbSNP
rs1220099390 5758 dbSNP
rs34898442 5759 dbSNP
rs971556611 5768 dbSNP
rs1442635682 5770 dbSNP
rs1489247684 5777 dbSNP
rs1391922528 5778 dbSNP
rs1324811857 5782 dbSNP
rs1462005626 5795 dbSNP
rs1191144122 5798 dbSNP
rs530940472 5799 dbSNP
rs965978256 5804 dbSNP
rs12520 5807 dbSNP
rs574907087 5813 dbSNP
rs150087526 5814 dbSNP
rs561604806 5821 dbSNP
rs1195340313 5826 dbSNP
rs1466972417 5835 dbSNP
rs916357223 5839 dbSNP
rs1213329046 5843 dbSNP
rs1423188751 5847 dbSNP
rs947866479 5848 dbSNP
rs1480977812 5850 dbSNP
rs1046297192 5851 dbSNP
rs914919759 5852 dbSNP
rs1203014808 5855 dbSNP
rs533307463 5857 dbSNP
rs906372789 5860 dbSNP
rs1165556173 5862 dbSNP
rs1369267498 5873 dbSNP
rs1302184062 5875 dbSNP
rs1351758635 5877 dbSNP
rs1391650826 5882 dbSNP
rs1397978662 5892 dbSNP
rs1296004559 5898 dbSNP
rs759377428 5899 dbSNP
rs1042715007 5908 dbSNP
rs767409123 5909 dbSNP
rs1036302029 5917 dbSNP
rs1452291237 5918 dbSNP
rs1394286292 5929 dbSNP
rs944551122 5936 dbSNP
rs1402194078 5937 dbSNP
rs1038879156 5953 dbSNP
rs1419950106 5954 dbSNP
rs897121360 5965 dbSNP
rs1252745090 5966 dbSNP
rs140729073 5967 dbSNP
rs1379005070 5970 dbSNP
rs900341760 5976 dbSNP
rs995551567 5980 dbSNP
rs1281601801 5985 dbSNP
rs28793091 5986 dbSNP
rs1346126833 5987 dbSNP
rs1312799647 5992 dbSNP
rs1280126751 5998 dbSNP
rs1323037648 6002 dbSNP
rs1239293082 6016 dbSNP
rs1027011277 6017 dbSNP
rs1304420438 6018 dbSNP
rs889899124 6023 dbSNP
rs1488418133 6026 dbSNP
rs138384197 6038 dbSNP
rs1314605051 6046 dbSNP
rs1027727474 6047 dbSNP
rs1374603306 6057 dbSNP
rs1158994128 6062 dbSNP
rs1454503590 6070 dbSNP
rs1365691591 6073 dbSNP
rs1179948789 6075 dbSNP
rs886454844 6082 dbSNP
rs540810842 6085 dbSNP
rs1019699763 6097 dbSNP
rs1182419116 6099 dbSNP
rs1190662424 6102 dbSNP
rs1416026550 6112 dbSNP
rs1437852018 6114 dbSNP
rs965591504 6118 dbSNP
rs574169955 6119 dbSNP
rs1206021542 6121 dbSNP
rs1353303445 6121 dbSNP
rs1031280398 6124 dbSNP
rs1334889809 6125 dbSNP
rs1381079678 6125 dbSNP
rs971672677 6132 dbSNP
rs957923204 6133 dbSNP
rs980346004 6134 dbSNP
rs1354820462 6136 dbSNP
rs989185620 6147 dbSNP
rs1034540437 6149 dbSNP
rs76374089 6150 dbSNP
rs552719698 6151 dbSNP
rs1157011824 6156 dbSNP
rs1456957643 6160 dbSNP
rs969093563 6165 dbSNP
rs1449355349 6179 dbSNP
rs981860742 6180 dbSNP
rs927765641 6181 dbSNP
rs945039323 6184 dbSNP
rs1194543593 6188 dbSNP
rs187484215 6190 dbSNP
rs1307919345 6201 dbSNP
rs531717640 6202 dbSNP
rs1204164204 6215 dbSNP
rs755798954 6219 dbSNP
rs1276208168 6221 dbSNP
rs1230857728 6228 dbSNP
rs1441682960 6230 dbSNP
rs1210583093 6231 dbSNP
rs1333544172 6242 dbSNP
rs1270649796 6243 dbSNP
rs149260132 6244 dbSNP
rs1048345669 6252 dbSNP
rs567544470 6257 dbSNP
rs1006904191 6259 dbSNP
rs765752849 6261 dbSNP
rs930467235 6270 dbSNP
rs1049632609 6271 dbSNP
rs139345260 6277 dbSNP
rs1456390487 6279 dbSNP
rs886489862 6281 dbSNP
rs1390146111 6284 dbSNP
rs1041123270 6291 dbSNP
rs1168969368 6292 dbSNP
rs193188023 6302 dbSNP
rs1045799573 6305 dbSNP
rs1238927809 6306 dbSNP
rs999722029 6308 dbSNP
rs546725097 6318 dbSNP
rs759151391 6319 dbSNP
rs9828141 6323 dbSNP
rs1415364918 6324 dbSNP
rs756667901 6327 dbSNP
rs1178697080 6328 dbSNP
rs1023267531 6333 dbSNP
rs73827433 6335 dbSNP
rs1446774111 6357 dbSNP
rs1197468369 6359 dbSNP
rs57510662 6365 dbSNP
rs1377048001 6374 dbSNP
rs1443900184 6377 dbSNP
rs1234677240 6383 dbSNP
rs1272668753 6385 dbSNP
rs1011706495 6386 dbSNP
rs927766546 6388 dbSNP
rs1439032473 6391 dbSNP
rs1349351712 6404 dbSNP
rs1329689458 6406 dbSNP
rs1343890874 6407 dbSNP
rs1219521711 6409 dbSNP
rs1412128318 6422 dbSNP
rs539194490 6428 dbSNP
rs767988385 6431 dbSNP
rs1142464 6433 dbSNP
rs1435676862 6437 dbSNP
rs966520573 6437 dbSNP
rs1198003304 6442 dbSNP
rs1477523977 6443 dbSNP
rs1232945655 6448 dbSNP
rs537432000 6454 dbSNP
rs1435582729 6455 dbSNP
rs755391406 6464 dbSNP
rs1211546024 6470 dbSNP
rs756656363 6484 dbSNP
rs1459181619 6485 dbSNP
rs911583204 6488 dbSNP
rs779948500 6493 dbSNP
rs1196871964 6505 dbSNP
rs1367251240 6512 dbSNP
rs1280364685 6514 dbSNP
rs920429164 6516 dbSNP
rs1246282419 6526 dbSNP
rs1415986368 6529 dbSNP
rs1377636633 6530 dbSNP
rs1172234637 6548 dbSNP
rs1414261727 6558 dbSNP
rs930520563 6566 dbSNP
rs974646283 6577 dbSNP
rs554308101 6581 dbSNP
rs1250480435 6584 dbSNP
rs1188540201 6586 dbSNP
rs1486645578 6591 dbSNP
rs1050320776 6592 dbSNP
rs1422015502 6594 dbSNP
rs911191611 6595 dbSNP
rs188924873 6597 dbSNP
rs1172080461 6602 dbSNP
rs1225719735 6606 dbSNP
rs1285162170 6606 dbSNP
rs1048918190 6614 dbSNP
rs781510854 6620 dbSNP
rs1287871502 6627 dbSNP
rs540579948 6638 dbSNP
rs1357836695 6647 dbSNP
rs1311603492 6654 dbSNP
rs1411113076 6657 dbSNP
rs1447695053 6659 dbSNP
rs901296280 6665 dbSNP
rs1319846317 6667 dbSNP
rs1321016070 6672 dbSNP
rs940808149 6675 dbSNP
rs1165101642 6683 dbSNP
rs1436827743 6685 dbSNP
rs1000094609 6690 dbSNP
rs1415507026 6691 dbSNP
rs749408957 6693 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084044. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep3 HITS-CLIP data was present in GSM1084047. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep4 HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb HITS-CLIP data was present in GSM1084068. RNA binding protein: AGO2. Condition:CLIP_noemetine_SigmaAb HITS-CLIP data was present in GSM1084073. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep1_AbnovaAb HITS-CLIP data was present in GSM1084076. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep1_SigmaAb HITS-CLIP data was present in GSM1084077. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep1_SigmaAb HITS-CLIP data was present in GSM1084078. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_AbnovaAb HITS-CLIP data was present in GSM1084082. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_SigmaAb HITS-CLIP data was present in GSM1084083. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_SigmaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084044
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep3
Location of target site ENST00000339296.5 | 3UTR | AGUUGAUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084047
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep4
Location of target site ENST00000339296.5 | 3UTR | AGUUGAUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000339296.5 | 3UTR | GACAGUGAGCUUAGUUGAUGUGUGUGUGUGUGUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000339296.5 | 3UTR | AGUUGAUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM1084068
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_SigmaAb
Location of target site ENST00000339296.5 | 3UTR | AGUUGAUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM1084073
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep1_AbnovaAb
Location of target site ENST00000339296.5 | 3UTR | AGUUGAUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM1084076
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep1_SigmaAb
Location of target site ENST00000339296.5 | 3UTR | UGAUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM1084077
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep1_SigmaAb
Location of target site ENST00000339296.5 | 3UTR | AGUUGAUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 9 for dataset GSM1084078
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep2_AbnovaAb
Location of target site ENST00000339296.5 | 3UTR | UUGAUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 10 for dataset GSM1084082
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep2_SigmaAb
Location of target site ENST00000339296.5 | 3UTR | AGUUGAUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 11 for dataset GSM1084083
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_SigmaAb
Location of target site ENST00000339296.5 | 3UTR | AGUUGAUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
LIHC -0.642 0.18 -0.800 0.1 4 Click to see details
BRCA -0.092 0.31 -0.052 0.39 31 Click to see details
STAD -0.396 0.37 -0.500 0.33 3 Click to see details
BLCA -0.069 0.45 0.029 0.48 6 Click to see details
LUSC -0.023 0.47 0.039 0.45 15 Click to see details
UCEC -0.077 0.48 -0.500 0.33 3 Click to see details
HNSC 0.018 0.48 -0.222 0.22 14 Click to see details
HNSC 0.018 0.48 -0.222 0.22 14 Click to see details
HNSC 0.018 0.48 -0.222 0.22 14 Click to see details
HNSC 0.018 0.48 -0.222 0.22 14 Click to see details
HNSC 0.018 0.48 -0.222 0.22 14 Click to see details
HNSC 0.018 0.48 -0.222 0.22 14 Click to see details
HNSC 0.018 0.48 -0.222 0.22 14 Click to see details
80 hsa-miR-2115-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057089 DDIT4 DNA damage inducible transcript 4 2 2
MIRT071216 FCF1 FCF1, rRNA-processing protein 2 2
MIRT226901 RAD23B RAD23 homolog B, nucleotide excision repair protein 2 2
MIRT235961 BACH1 BTB domain and CNC homolog 1 2 2
MIRT294569 ZNF460 zinc finger protein 460 2 4
MIRT321046 RAC1 Rac family small GTPase 1 2 4
MIRT359666 NUS1 NUS1 dehydrodolichyl diphosphate synthase subunit 2 8
MIRT366451 KLHL15 kelch like family member 15 2 2
MIRT405375 ZBTB18 zinc finger and BTB domain containing 18 2 2
MIRT441794 TCEAL5 transcription elongation factor A like 5 2 2
MIRT443295 TCEAL3 transcription elongation factor A like 3 2 2
MIRT455275 DDX39B DExD-box helicase 39B 2 2
MIRT458523 C5orf22 chromosome 5 open reading frame 22 2 2
MIRT464960 TWIST1 twist family bHLH transcription factor 1 2 2
MIRT466848 STX6 syntaxin 6 2 2
MIRT469252 RHOB ras homolog family member B 2 2
MIRT469825 RAB14 RAB14, member RAS oncogene family 2 4
MIRT470047 PTGFRN prostaglandin F2 receptor inhibitor 2 2
MIRT471420 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT472024 NPM1 nucleophosmin 1 2 2
MIRT484156 CENPN centromere protein N 2 2
MIRT485490 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT490462 PROSER2 proline and serine rich 2 2 2
MIRT493069 MTCH1 mitochondrial carrier 1 2 2
MIRT493573 HSP90AA1 heat shock protein 90 alpha family class A member 1 2 8
MIRT494919 NDUFC2-KCTD14 NDUFC2-KCTD14 readthrough 2 2
MIRT500439 ZMAT3 zinc finger matrin-type 3 2 2
MIRT500931 SRPR SRP receptor alpha subunit 2 4
MIRT501551 POC1B-GALNT4 POC1B-GALNT4 readthrough 2 2
MIRT501809 NEURL1B neuralized E3 ubiquitin protein ligase 1B 2 2
MIRT502415 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 2 2
MIRT506504 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 2
MIRT507861 CCNE2 cyclin E2 2 2
MIRT510511 YOD1 YOD1 deubiquitinase 2 6
MIRT516073 RAB42 RAB42, member RAS oncogene family 2 2
MIRT519030 KYNU kynureninase 2 6
MIRT521762 PPIL1 peptidylprolyl isomerase like 1 2 4
MIRT522898 KCNJ3 potassium voltage-gated channel subfamily J member 3 2 4
MIRT527370 MGARP mitochondria localized glutamic acid rich protein 2 2
MIRT530691 C8orf46 chromosome 8 open reading frame 46 2 2
MIRT530867 TRUB1 TruB pseudouridine synthase family member 1 2 2
MIRT531832 MTPAP mitochondrial poly(A) polymerase 2 4
MIRT533035 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT533165 WIPF2 WAS/WASL interacting protein family member 2 2 2
MIRT533464 TRIM71 tripartite motif containing 71 2 2
MIRT534331 SHCBP1 SHC binding and spindle associated 1 2 2
MIRT539372 ADSS adenylosuccinate synthase 2 6
MIRT545951 ZBTB10 zinc finger and BTB domain containing 10 2 2
MIRT553283 TSR1 TSR1, ribosome maturation factor 2 2
MIRT553532 TMEM185B transmembrane protein 185B 2 4
MIRT556480 LIPA lipase A, lysosomal acid type 2 2
MIRT556975 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT557697 GATA6 GATA binding protein 6 2 2
MIRT558901 CCDC58 coiled-coil domain containing 58 2 2
MIRT559224 BLMH bleomycin hydrolase 2 2
MIRT559827 SLPI secretory leukocyte peptidase inhibitor 2 2
MIRT563435 SLC3A2 solute carrier family 3 member 2 2 2
MIRT569270 PCDH11X protocadherin 11 X-linked 2 2
MIRT571386 JKAMP JNK1/MAPK8-associated membrane protein 2 2
MIRT572567 AFF1 AF4/FMR2 family member 1 2 2
MIRT610400 AR androgen receptor 2 2
MIRT611058 ZNF621 zinc finger protein 621 2 2
MIRT635118 TMEM233 transmembrane protein 233 2 2
MIRT641617 DEFB118 defensin beta 118 2 2
MIRT642146 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT647295 C8orf33 chromosome 8 open reading frame 33 2 2
MIRT648155 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT652780 TENM3 teneurin transmembrane protein 3 2 2
MIRT657356 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 2 2
MIRT658718 ELN elastin 2 2
MIRT662441 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT665302 ZBTB38 zinc finger and BTB domain containing 38 2 2
MIRT699898 RUNX1 runt related transcription factor 1 2 2
MIRT700921 PDS5A PDS5 cohesin associated factor A 2 2
MIRT700992 PDE3A phosphodiesterase 3A 2 2
MIRT707397 DCAF4L1 DDB1 and CUL4 associated factor 4 like 1 2 2
MIRT711895 INSIG2 insulin induced gene 2 2 2
MIRT712072 XRCC5 X-ray repair cross complementing 5 2 2
MIRT716121 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT724470 SMAD2 SMAD family member 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-2115 Docetaxel+Cisplatin+5-Fluorouracil sensitive tissue (hypopharyngeal squamous cell carcinoma)
hsa-mir-2115 Decitabine 451668 approved sensitive tissue (esopheageal cancer)
hsa-miR-2115-3p Imatinib 5291 NSC743414 approved resistant High Chronic Myelogenous Leukemia cell line (K562)
hsa-miR-2115-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-2115-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-2115-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-miR-2115-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-2115-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-2115-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)

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