pre-miRNA Information
pre-miRNA hsa-mir-548t   
Genomic Coordinates chr4: 173268160 - 173268233
Description Homo sapiens miR-548t stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548t-3p
Sequence 46| AAAAACCACAAUUACUUUUGCACCA |70
Evidence Not_experimental
Experiments
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 2 4 + 173268206 29233923 MiREDiBase
A-to-I 3 4 + 173268207 29233923 MiREDiBase
A-to-I 4 4 + 173268208 29233923 MiREDiBase
A-to-I 10 4 + 173268214 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs73872515 5 dbSNP
rs1426966747 6 dbSNP
rs1158401109 21 dbSNP
rs943938928 24 dbSNP
Putative Targets

Gene Information
Gene Symbol EDIL3   
Synonyms DEL1
Description EGF like repeats and discoidin domains 3
Transcript NM_005711   
Expression
Putative miRNA Targets on EDIL3
3'UTR of EDIL3
(miRNA target sites are highlighted)
>EDIL3|NM_005711|3'UTR
   1 GGGGAGGCTACATTTCACAACCCTCTTCCCTATTTCCCTAAAAGTATCTCCATGGAATGAACTGTGCAAAATCTGTAGGA
  81 AACTGAATGGTTTTTTTTTTTTTTTCATGAAAAAGTGCTCAAATTATGGTAGGCAACTAACGGTGTTTTTAAGGGGGTCT
 161 AAGCCTGCCTTTTCAATGATTTAATTTGATTTTATTTTATCCGTCAAATCTCTTAAGTAACAACACATTAAGTGTGAATT
 241 ACTTTTCTCTCATTGTTTCCTGAATTATTCGCATTGGTAGAAATATATTAGGGAAAGAAAGTAGCCTTCTTTTTATAGCA
 321 AGAGTAAAAAAGTCTCAAAGTCATCAAATAAGAGCAAGAGTTGATAGAGCTTTTACAATCAATACTCACCTAATTCTGAT
 401 AAAAGGAATACTGCAATGTTAGCAATAAGTTTTTTTCTTCTGTAATGACTCTACGTTATCCTGTTTCCCTGTGCCTACCA
 481 AACACTGTCAATGTTTATTACAAAATTTTAAAGAAGAATATGTAACATGCAGTACTGATATTATAATTCTCATTTTACTT
 561 TCATTATTTCTAATAAGAGATTATGTGACTTCTTTTTCTTTTAGTTCTATTCTACATTCTTAATATTGTATATTACCTGA
 641 ATAATTCAATTTTTTTCTAATTGAATTTCCTATTAGTTGACTAAAAGAAGTGTCATGTTTACTCATATATGTAGAACATG
 721 ACTGCCTATCAGTAGATTGATCTGTATTTAATATTCGTTAATTAAATCTGCAGTTTTATTTTTGAAGGAAGCCATAACTA
 801 TTTAATTTCCAAATAATTGCTTCATAAAGAATCCCATACTCTCAGTTTGCACAAAAGAACAAAAAATATATATGTCTCTT
 881 TAAATTTAAATCTTCATTTAGATGGTAATTACATATCCTTATATTTACTTTAAAAAATCGGCTTATTTGTTTATTTTATA
 961 AAAAATTTAGCAAAGAAATATTAATATAGTGCTGCATAGTTTGGCCAAGCATACTCATCATTTCTTTGTTCAGCTCCACA
1041 TTTCCTGTGAAACTAACATCTTATTGAGATTTGAAACTGGTGGTAGTTTCCCAGGAAGGCACAGGTGGAGTTATTTGTGA
1121 GAAGCAAAGTGTTTACTAATGACAAAGTAGTAAACCATTTTCAAGATGAAAACTGATTTCTATTTATTTTGCTTCAAAGG
1201 TCCTGAAAAAATAAGCAATTATCATAACAATTTGTTATTGATACTGGAGGTTTCATTGACATGTCTCTCAAATTAAAGCT
1281 CACACTGCCTCCATAAAAGTCTTCAACATCTAATTTATAAGCTTTACAAGTATTTATTTTATAAGGCTTAGACAGAATTA
1361 TTGGAGTTTTAAATTAAGTGTATTGGAAAAGAAAGGATGGTATGTGTATGAAATGTTAAGATCCTACGCAACACTGCTAT
1441 TTTTTTCCTTTAATATTTGTGCTGCATAACAAAAGCCACTAGACTGTTACTGTCTTGTCTGTCCATGTGTTAACAGCATT
1521 TCTTAATGATGTATATATGGAGTGGTCTTCAATCATAGTGAAGAATTTAAAGAGAAAGTCAATTGTATTGGCATTTTTAA
1601 TAAGAACAAAATTAGTTCGTCTAAGGGGACTGGCTGGCCACATATTTGTTCCTTGCCCATATGCTTTCTACTTCTTGTTC
1681 TTATTATGAAATTATGAATTTGAAGCCTCTGAAATGGTGATCAGTTTTCAACATCTTTCAAAAACAAAATTACTATTTCC
1761 TCCATATTGCCTTTTTTAGATAACTTTAAAGTTAGGATTTTAAAATATTTGTAACTGGCTAAATTTTAAAGTCGTGACAA
1841 ATAATTACTTAGGTTCAGAAATATACACACACTTACTCTTTAGCCAGTTTCTTTCAAGGTTTACTGTCCCATCAGATATC
1921 TAGCCATTTTCCTTTGCAAATTACATACCTTCTTAAGAGTGTATTTTTAAGATTATTACTTACGCTTTATGATGATATAG
2001 TTTTTCAAAATTATTTATAGCTTCATATGATGTTTTGTAATTTTTTCTATTGATACCTGTTTTAAAAATATTTTCCAAGG
2081 AAGTTGATTAAAATTATATTTGTTACCTTTTAGAAAAAGCATTGAAATGAGTTTCTCTTGCTTTTTCATTTTCCCTCTGC
2161 TTTATATGCTCTTCGCAATACATCATGTCCAACGGGATACCTATTGTTCTCATGACACCCAAAATTGATGAGAGCAAAGG
2241 GGTCGCACCATATGGAAATGTTGAAAACTATTGTAAAGTAGTATTATGAAGTAGCTTTTGTGTCATTCATGTCGATGACA
2321 TGAAAGTGAAGTAAATTTATTCTATGTAAATTCACACTAAAACCAGTACAGTACCATAAGTAGAATACATGTAAGAATCA
2401 CCTAGTCTTCACTATATTGAGTAAATATAACATGCTAATTTTACAATTAATGAAACTAAACTTTTAAACATCTCCATTAT
2481 ATCTACATCCTTTTGAAGGTATTTATCATAGTTGCCAATTTTAATTTTAGGATTGACTTTCTCTTTCTGAATGACTTCAT
2561 AAAGTTTGGTGTGAATTTTGAAGACTTGGGTTACTAATGATTGTATCTTTGCTAGTCAACAACTTATGAAATATACTCAA
2641 TGCGTCTGATGTGTCATTAAGTGCAGAAATAACTAAGACACAAATAACCTTTGCAAACCTTCAAGCTGTGTAATATTCCA
2721 ATGTTGTTTTTTTCTTTGTATATATACTTATATCACGTAGGATGTAAAACCAGTATGACCTTGTCTAGTCTCCAAACTTA
2801 AAATAAACTTTTGAAAAGCTGGGAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acCACGUUUU---CA----UUAAC--ACCAAAAa 5'
            ||||||||   ||    || ||  ||||||| 
Target 5' ctGTGCAAAATCTGTAGGAAACTGAATGGTTTTt 3'
62 - 95 171.00 -13.80
2
miRNA  3' acCACGUUUUCA--UUAACACCAAAAa 5'
            |||:|| | |  || ||| ||||| 
Target 5' ctGTGTAATATTCCAA-TGTTGTTTTt 3'
2706 - 2731 140.00 -7.96
3
miRNA  3' accaCGUUUUCA-UUAAC---ACC--AAAAa 5'
              | :||||| |||||   |||  |||| 
Target 5' taaaGAGAAAGTCAATTGTATTGGCATTTTt 3'
1568 - 1598 133.00 -6.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26974525 8 COSMIC
COSN31613627 9 COSMIC
COSN26974524 13 COSMIC
COSN30477779 20 COSMIC
COSN30480736 37 COSMIC
COSN30472843 38 COSMIC
COSN30131302 45 COSMIC
COSN30471868 48 COSMIC
COSN30450213 59 COSMIC
COSN31514247 59 COSMIC
COSN30123189 66 COSMIC
COSN30449178 79 COSMIC
COSN30533299 79 COSMIC
COSN30166321 85 COSMIC
COSN29052924 90 COSMIC
COSN30112278 90 COSMIC
COSN1320023 91 COSMIC
COSN30189813 91 COSMIC
COSN31526555 114 COSMIC
COSN31962428 141 COSMIC
COSN31502589 156 COSMIC
COSN31572068 210 COSMIC
COSN20127294 238 COSMIC
COSN31599129 247 COSMIC
COSN30165466 358 COSMIC
COSN15209044 428 COSMIC
COSN30538676 481 COSMIC
COSN31488290 537 COSMIC
COSN31480198 586 COSMIC
COSN7581948 844 COSMIC
COSN9193309 1131 COSMIC
COSN4852295 1187 COSMIC
COSN16481891 1476 COSMIC
COSN6512164 1556 COSMIC
COSN22688569 1601 COSMIC
COSN2120150 1636 COSMIC
COSN15117079 1639 COSMIC
COSN6929066 1793 COSMIC
COSN7581947 1936 COSMIC
COSN19532205 1952 COSMIC
COSN6929065 1957 COSMIC
COSN2120149 1977 COSMIC
COSN9193308 2015 COSMIC
COSN2120148 2028 COSMIC
COSN22704919 2129 COSMIC
COSN30195656 2317 COSMIC
COSN16533659 2340 COSMIC
COSN2120147 2654 COSMIC
COSN23332848 2773 COSMIC
COSN8633521 2777 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1435167164 1 dbSNP
rs377681792 5 dbSNP
rs894115063 7 dbSNP
rs1191036221 11 dbSNP
rs777232885 17 dbSNP
rs771401941 18 dbSNP
rs747428055 20 dbSNP
rs1034051632 22 dbSNP
rs1003502296 25 dbSNP
rs866912366 28 dbSNP
rs778106654 32 dbSNP
rs758695469 34 dbSNP
rs911755557 40 dbSNP
rs764887294 44 dbSNP
rs748413355 46 dbSNP
rs369916818 48 dbSNP
rs777532240 57 dbSNP
rs1263130813 63 dbSNP
rs930139018 65 dbSNP
rs1191548082 66 dbSNP
rs955956626 67 dbSNP
rs1032897748 84 dbSNP
rs62364163 89 dbSNP
rs773088869 90 dbSNP
rs1435386228 91 dbSNP
rs1459465379 93 dbSNP
rs1260291203 94 dbSNP
rs1385626954 95 dbSNP
rs968039865 104 dbSNP
rs1486217679 105 dbSNP
rs1232794515 106 dbSNP
rs1261363470 106 dbSNP
rs1293309264 106 dbSNP
rs146077789 106 dbSNP
rs201546691 106 dbSNP
rs878911080 106 dbSNP
rs1262640365 107 dbSNP
rs1203928043 108 dbSNP
rs1201998420 110 dbSNP
rs565882694 112 dbSNP
rs1012368916 114 dbSNP
rs111566312 118 dbSNP
rs1474001579 120 dbSNP
rs1332656634 126 dbSNP
rs1363913022 126 dbSNP
rs898692328 133 dbSNP
rs1293309380 137 dbSNP
rs758546678 141 dbSNP
rs752699834 142 dbSNP
rs1321987163 145 dbSNP
rs942836426 153 dbSNP
rs1467841032 154 dbSNP
rs536496688 157 dbSNP
rs1307929909 167 dbSNP
rs1318816965 182 dbSNP
rs572147103 185 dbSNP
rs933197157 192 dbSNP
rs923209964 193 dbSNP
rs112770614 202 dbSNP
rs1295340699 203 dbSNP
rs186163750 208 dbSNP
rs1021438198 213 dbSNP
rs989849345 214 dbSNP
rs1250723485 217 dbSNP
rs958489028 219 dbSNP
rs1156311478 227 dbSNP
rs930888398 229 dbSNP
rs1435235787 233 dbSNP
rs1175385260 238 dbSNP
rs765555573 239 dbSNP
rs1002561584 240 dbSNP
rs1446933033 242 dbSNP
rs1298973263 249 dbSNP
rs571575203 252 dbSNP
rs761355294 255 dbSNP
rs1039095619 270 dbSNP
rs944494562 271 dbSNP
rs1278734472 273 dbSNP
rs182081090 279 dbSNP
rs994443090 285 dbSNP
rs898661211 300 dbSNP
rs1175022611 301 dbSNP
rs1237056940 305 dbSNP
rs1038584628 309 dbSNP
rs1454301577 315 dbSNP
rs1195428485 324 dbSNP
rs191948621 326 dbSNP
rs561447512 332 dbSNP
rs570702262 344 dbSNP
rs889882862 355 dbSNP
rs925865461 358 dbSNP
rs1460634322 363 dbSNP
rs759748326 366 dbSNP
rs970373298 367 dbSNP
rs1443125655 400 dbSNP
rs1301962606 405 dbSNP
rs1023666166 406 dbSNP
rs1215565916 412 dbSNP
rs1298161001 418 dbSNP
rs187630047 422 dbSNP
rs960796746 425 dbSNP
rs1256953663 428 dbSNP
rs1308009492 430 dbSNP
rs527369311 434 dbSNP
rs1468548029 435 dbSNP
rs1035039241 437 dbSNP
rs527611729 448 dbSNP
rs1005009611 453 dbSNP
rs1336947256 454 dbSNP
rs538221514 455 dbSNP
rs923973106 456 dbSNP
rs1041599163 460 dbSNP
rs1462888156 461 dbSNP
rs995128762 465 dbSNP
rs1392606688 466 dbSNP
rs768305215 467 dbSNP
rs900732383 468 dbSNP
rs1323941339 473 dbSNP
rs1444049393 476 dbSNP
rs1432140108 479 dbSNP
rs1386008726 485 dbSNP
rs1291106097 497 dbSNP
rs1189862910 498 dbSNP
rs946007354 501 dbSNP
rs944340632 506 dbSNP
rs1436305496 507 dbSNP
rs73141978 515 dbSNP
rs1195038411 519 dbSNP
rs1450486596 525 dbSNP
rs1216446294 527 dbSNP
rs1243722219 541 dbSNP
rs1052817608 543 dbSNP
rs1418905787 545 dbSNP
rs561860715 545 dbSNP
rs990000903 549 dbSNP
rs958675668 551 dbSNP
rs927077288 556 dbSNP
rs1243736564 558 dbSNP
rs1358102326 560 dbSNP
rs1315215760 561 dbSNP
rs1401291343 563 dbSNP
rs753991601 564 dbSNP
rs1343933038 566 dbSNP
rs532911675 569 dbSNP
rs1313836145 572 dbSNP
rs1355747115 579 dbSNP
rs562358920 581 dbSNP
rs1025351660 584 dbSNP
rs139780489 592 dbSNP
rs962965473 596 dbSNP
rs1355042857 602 dbSNP
rs1392306740 603 dbSNP
rs1223842838 604 dbSNP
rs573626085 607 dbSNP
rs1351382535 612 dbSNP
rs1215693614 614 dbSNP
rs1301827021 616 dbSNP
rs960655221 624 dbSNP
rs1486507258 625 dbSNP
rs555139258 632 dbSNP
rs1186081654 636 dbSNP
rs1007079670 646 dbSNP
rs1237060238 649 dbSNP
rs1470585472 650 dbSNP
rs889839407 651 dbSNP
rs1034981838 657 dbSNP
rs769332947 657 dbSNP
rs1385878527 660 dbSNP
rs1406475536 661 dbSNP
rs1419600378 666 dbSNP
rs559472470 677 dbSNP
rs950788624 679 dbSNP
rs1363461149 687 dbSNP
rs1027844786 690 dbSNP
rs995389778 691 dbSNP
rs539998739 693 dbSNP
rs1339506335 694 dbSNP
rs1442357023 696 dbSNP
rs900764749 701 dbSNP
rs572705167 706 dbSNP
rs1239376067 711 dbSNP
rs1280878234 714 dbSNP
rs375575798 715 dbSNP
rs998700844 716 dbSNP
rs902520703 717 dbSNP
rs1490170985 720 dbSNP
rs1042376778 724 dbSNP
rs1289894111 726 dbSNP
rs1211145520 730 dbSNP
rs1348043211 736 dbSNP
rs1439116905 738 dbSNP
rs12522953 742 dbSNP
rs914507442 752 dbSNP
rs1052765439 756 dbSNP
rs1172330026 757 dbSNP
rs1054668145 768 dbSNP
rs1054454706 788 dbSNP
rs937175548 792 dbSNP
rs927141211 794 dbSNP
rs146565284 800 dbSNP
rs1445328766 805 dbSNP
rs571601673 815 dbSNP
rs1304142387 819 dbSNP
rs1373089231 820 dbSNP
rs1404805397 823 dbSNP
rs1366768140 824 dbSNP
rs1274005271 826 dbSNP
rs1325550528 845 dbSNP
rs1042914888 849 dbSNP
rs1139750 857 dbSNP
rs1399003551 859 dbSNP
rs1139751 860 dbSNP
rs1457377502 860 dbSNP
rs180697565 868 dbSNP
rs948530816 869 dbSNP
rs538529760 870 dbSNP
rs189466208 871 dbSNP
rs918224892 872 dbSNP
rs1374023959 874 dbSNP
rs1384402910 874 dbSNP
rs1476556549 879 dbSNP
rs1159362490 892 dbSNP
rs993192760 892 dbSNP
rs1464707864 895 dbSNP
rs1325956495 896 dbSNP
rs1459075407 899 dbSNP
rs972397347 904 dbSNP
rs1413833850 905 dbSNP
rs1326806110 909 dbSNP
rs962934394 911 dbSNP
rs1197025068 919 dbSNP
rs1480048075 921 dbSNP
rs1317490948 933 dbSNP
rs1017201561 937 dbSNP
rs1234033988 938 dbSNP
rs1247243267 938 dbSNP
rs1007582233 940 dbSNP
rs954219655 942 dbSNP
rs927996168 949 dbSNP
rs376580358 951 dbSNP
rs772385633 952 dbSNP
rs1260639885 953 dbSNP
rs1208897615 960 dbSNP
rs998218395 966 dbSNP
rs1369725142 980 dbSNP
rs1261615247 985 dbSNP
rs1162600323 986 dbSNP
rs529294571 987 dbSNP
rs973602173 996 dbSNP
rs567089042 997 dbSNP
rs1296095704 1000 dbSNP
rs9293360 1002 dbSNP
rs1277090769 1003 dbSNP
rs1429325859 1004 dbSNP
rs10473880 1005 dbSNP
rs1261896150 1006 dbSNP
rs1010875253 1010 dbSNP
rs1425407356 1014 dbSNP
rs1214968420 1016 dbSNP
rs562481325 1019 dbSNP
rs1319082530 1022 dbSNP
rs1486180392 1025 dbSNP
rs561102376 1027 dbSNP
rs757285643 1030 dbSNP
rs1257759986 1041 dbSNP
rs1421603112 1049 dbSNP
rs1054357967 1056 dbSNP
rs1186214975 1061 dbSNP
rs1404231291 1064 dbSNP
rs937292441 1074 dbSNP
rs1364363259 1076 dbSNP
rs1390057122 1084 dbSNP
rs905686709 1087 dbSNP
rs567666466 1108 dbSNP
rs1045981186 1110 dbSNP
rs1359673286 1113 dbSNP
rs1469084537 1114 dbSNP
rs1425687270 1125 dbSNP
rs1174231035 1128 dbSNP
rs1474391420 1129 dbSNP
rs1304871037 1137 dbSNP
rs1377243904 1138 dbSNP
rs185354145 1149 dbSNP
rs1188675479 1150 dbSNP
rs777878937 1153 dbSNP
rs114819029 1155 dbSNP
rs1238648952 1164 dbSNP
rs1285846727 1165 dbSNP
rs1349060437 1167 dbSNP
rs866016459 1168 dbSNP
rs904286275 1175 dbSNP
rs1202685555 1178 dbSNP
rs972365020 1182 dbSNP
rs550686531 1187 dbSNP
rs940993523 1191 dbSNP
rs1250657770 1198 dbSNP
rs1176716062 1199 dbSNP
rs909563364 1205 dbSNP
rs1379600857 1211 dbSNP
rs780947413 1212 dbSNP
rs985729155 1213 dbSNP
rs954477542 1220 dbSNP
rs1313147324 1232 dbSNP
rs549146378 1236 dbSNP
rs1281239494 1240 dbSNP
rs1357690964 1243 dbSNP
rs1213267094 1261 dbSNP
rs1029790818 1262 dbSNP
rs1444578697 1263 dbSNP
rs894334151 1277 dbSNP
rs770882196 1283 dbSNP
rs1372353219 1289 dbSNP
rs1237006763 1293 dbSNP
rs966736253 1294 dbSNP
rs1311938414 1295 dbSNP
rs1232086739 1302 dbSNP
rs1056879905 1311 dbSNP
rs112727358 1317 dbSNP
rs1458756635 1317 dbSNP
rs1237536271 1321 dbSNP
rs1020981815 1322 dbSNP
rs1380741439 1328 dbSNP
rs908442147 1330 dbSNP
rs1422835719 1331 dbSNP
rs1432313941 1333 dbSNP
rs1047732274 1337 dbSNP
rs1336313089 1342 dbSNP
rs1426029073 1346 dbSNP
rs1010966972 1351 dbSNP
rs1464192845 1353 dbSNP
rs929272249 1358 dbSNP
rs540159934 1370 dbSNP
rs1439263407 1380 dbSNP
rs1359462406 1382 dbSNP
rs777816874 1383 dbSNP
rs1367365027 1395 dbSNP
rs1215513052 1397 dbSNP
rs1408101969 1397 dbSNP
rs964819198 1399 dbSNP
rs572668817 1414 dbSNP
rs144284328 1421 dbSNP
rs1418739485 1426 dbSNP
rs545463538 1427 dbSNP
rs369496223 1428 dbSNP
rs1488068500 1434 dbSNP
rs1186882674 1436 dbSNP
rs11951036 1437 dbSNP
rs1382926404 1439 dbSNP
rs1265665217 1449 dbSNP
rs1476950331 1456 dbSNP
rs1170192840 1462 dbSNP
rs1418672149 1464 dbSNP
rs1182586000 1467 dbSNP
rs1483380960 1474 dbSNP
rs866800206 1483 dbSNP
rs754895816 1484 dbSNP
rs1300415632 1489 dbSNP
rs181245129 1491 dbSNP
rs1397781824 1503 dbSNP
rs998530171 1505 dbSNP
rs376149433 1507 dbSNP
rs949879357 1510 dbSNP
rs1229524627 1514 dbSNP
rs1287722403 1515 dbSNP
rs1231314256 1518 dbSNP
rs1321014816 1531 dbSNP
rs1217129756 1533 dbSNP
rs1357350685 1534 dbSNP
rs897022412 1535 dbSNP
rs1036764091 1537 dbSNP
rs941129828 1543 dbSNP
rs1487148409 1547 dbSNP
rs751513559 1555 dbSNP
rs1021282585 1564 dbSNP
rs778967198 1572 dbSNP
rs985539820 1574 dbSNP
rs1449446553 1575 dbSNP
rs1381657676 1579 dbSNP
rs1401820906 1582 dbSNP
rs1056912366 1593 dbSNP
rs1285685272 1600 dbSNP
rs1419416435 1601 dbSNP
rs932895006 1606 dbSNP
rs1369760955 1611 dbSNP
rs1308559374 1615 dbSNP
rs922857749 1619 dbSNP
rs977000437 1627 dbSNP
rs966831250 1630 dbSNP
rs1281900817 1633 dbSNP
rs556515140 1637 dbSNP
rs1021116020 1640 dbSNP
rs1046923065 1644 dbSNP
rs989513100 1654 dbSNP
rs958369027 1656 dbSNP
rs1311296736 1657 dbSNP
rs1351309921 1660 dbSNP
rs1215622775 1661 dbSNP
rs1279659167 1668 dbSNP
rs1033645926 1670 dbSNP
rs1444325258 1670 dbSNP
rs1208227008 1677 dbSNP
rs1237011878 1680 dbSNP
rs931241811 1681 dbSNP
rs1162383023 1686 dbSNP
rs1378985431 1695 dbSNP
rs537807959 1706 dbSNP
rs1415543856 1708 dbSNP
rs1175172201 1721 dbSNP
rs1415840814 1738 dbSNP
rs1037696998 1740 dbSNP
rs527915038 1755 dbSNP
rs1253056591 1761 dbSNP
rs139731784 1762 dbSNP
rs1333360803 1766 dbSNP
rs531597792 1785 dbSNP
rs1239224777 1790 dbSNP
rs910616688 1795 dbSNP
rs1346815327 1798 dbSNP
rs1217691087 1805 dbSNP
rs1278106739 1816 dbSNP
rs969973555 1828 dbSNP
rs534509274 1831 dbSNP
rs1458315718 1833 dbSNP
rs567052792 1834 dbSNP
rs530877091 1838 dbSNP
rs754992845 1848 dbSNP
rs924859619 1849 dbSNP
rs896988250 1853 dbSNP
rs533043373 1854 dbSNP
rs1477212497 1864 dbSNP
rs968983765 1868 dbSNP
rs560180485 1871 dbSNP
rs1005268840 1875 dbSNP
rs888210453 1876 dbSNP
rs1222429083 1878 dbSNP
rs1465727539 1886 dbSNP
rs1021731520 1891 dbSNP
rs991146136 1893 dbSNP
rs1049373947 1894 dbSNP
rs958711590 1897 dbSNP
rs568900185 1900 dbSNP
rs1324055825 1906 dbSNP
rs1332619779 1913 dbSNP
rs932293930 1916 dbSNP
rs1035367174 1927 dbSNP
rs80239077 1931 dbSNP
rs1223499154 1945 dbSNP
rs1220596293 1952 dbSNP
rs1256260563 1956 dbSNP
rs886980190 1957 dbSNP
rs1288764617 1961 dbSNP
rs372574255 1966 dbSNP
rs1041278638 1973 dbSNP
rs1411513852 1979 dbSNP
rs1450313702 1981 dbSNP
rs1343600351 1982 dbSNP
rs10037615 1983 dbSNP
rs1267800711 1983 dbSNP
rs914037357 1984 dbSNP
rs1457952015 1991 dbSNP
rs561363503 1993 dbSNP
rs1156492151 1994 dbSNP
rs1456387138 1997 dbSNP
rs898395914 2000 dbSNP
rs1184822670 2017 dbSNP
rs766544113 2018 dbSNP
rs563593878 2019 dbSNP
rs958125239 2025 dbSNP
rs1192325039 2031 dbSNP
rs565360820 2032 dbSNP
rs926713924 2036 dbSNP
rs1215260536 2039 dbSNP
rs1267797967 2048 dbSNP
rs980908169 2049 dbSNP
rs761064324 2054 dbSNP
rs1268485381 2055 dbSNP
rs546475987 2056 dbSNP
rs1287232888 2057 dbSNP
rs1489438648 2064 dbSNP
rs750728266 2067 dbSNP
rs1195417897 2074 dbSNP
rs1230029852 2080 dbSNP
rs1260569250 2082 dbSNP
rs1051810141 2083 dbSNP
rs1187596073 2095 dbSNP
rs1321221277 2098 dbSNP
rs1456350358 2108 dbSNP
rs1300472905 2119 dbSNP
rs1360932417 2119 dbSNP
rs1387352915 2123 dbSNP
rs1025021317 2137 dbSNP
rs933389987 2147 dbSNP
rs1396727072 2165 dbSNP
rs1314973627 2166 dbSNP
rs374810214 2167 dbSNP
rs1244709511 2170 dbSNP
rs1014174221 2174 dbSNP
rs1388944000 2175 dbSNP
rs1160987504 2179 dbSNP
rs1214896072 2186 dbSNP
rs961293986 2193 dbSNP
rs141595354 2194 dbSNP
rs62364162 2199 dbSNP
rs376296879 2203 dbSNP
rs1049922793 2207 dbSNP
rs1035313649 2218 dbSNP
rs981188677 2221 dbSNP
rs370864671 2225 dbSNP
rs951124445 2228 dbSNP
rs1466775696 2230 dbSNP
rs774866590 2244 dbSNP
rs1040694430 2245 dbSNP
rs1451993808 2247 dbSNP
rs1332704295 2258 dbSNP
rs945592117 2265 dbSNP
rs898421812 2268 dbSNP
rs555806755 2275 dbSNP
rs769455287 2280 dbSNP
rs1309011541 2281 dbSNP
rs1018156962 2287 dbSNP
rs1257333046 2295 dbSNP
rs1202055915 2301 dbSNP
rs1202452430 2304 dbSNP
rs1007975987 2308 dbSNP
rs759081206 2314 dbSNP
rs1176661715 2327 dbSNP
rs776464058 2338 dbSNP
rs1053930866 2339 dbSNP
rs562791909 2344 dbSNP
rs1178583170 2363 dbSNP
rs1339813838 2364 dbSNP
rs933414481 2370 dbSNP
rs926835996 2376 dbSNP
rs1171442459 2385 dbSNP
rs1042291841 2391 dbSNP
rs1445256981 2407 dbSNP
rs1313907784 2411 dbSNP
rs770685996 2412 dbSNP
rs981261106 2416 dbSNP
rs1388873821 2426 dbSNP
rs1303010110 2436 dbSNP
rs970872854 2444 dbSNP
rs1292757312 2446 dbSNP
rs1056087633 2449 dbSNP
rs937585420 2450 dbSNP
rs1258180619 2453 dbSNP
rs1319311041 2454 dbSNP
rs917892383 2461 dbSNP
rs544736881 2462 dbSNP
rs1232223665 2464 dbSNP
rs928334664 2481 dbSNP
rs981056213 2499 dbSNP
rs1322131850 2508 dbSNP
rs1265592475 2529 dbSNP
rs1480243393 2532 dbSNP
rs1450084264 2533 dbSNP
rs1425879066 2545 dbSNP
rs574046653 2549 dbSNP
rs951155304 2549 dbSNP
rs1170429489 2551 dbSNP
rs1350969812 2555 dbSNP
rs750040403 2572 dbSNP
rs1292170961 2575 dbSNP
rs974322141 2576 dbSNP
rs1303796637 2585 dbSNP
rs555830543 2588 dbSNP
rs1371874354 2590 dbSNP
rs1403962750 2597 dbSNP
rs188677511 2605 dbSNP
rs1018523621 2607 dbSNP
rs1212294976 2614 dbSNP
rs1272249318 2617 dbSNP
rs1006843852 2622 dbSNP
rs573504010 2625 dbSNP
rs952648965 2627 dbSNP
rs1263484870 2628 dbSNP
rs765016365 2633 dbSNP
rs1030354169 2635 dbSNP
rs1181968508 2636 dbSNP
rs771832295 2640 dbSNP
rs1476920638 2643 dbSNP
rs1414566168 2644 dbSNP
rs184264995 2648 dbSNP
rs903275498 2650 dbSNP
rs1365360099 2657 dbSNP
rs539605637 2658 dbSNP
rs1420681070 2659 dbSNP
rs1298508260 2663 dbSNP
rs1041763504 2673 dbSNP
rs1200843402 2679 dbSNP
rs1127781 2680 dbSNP
rs1484138490 2688 dbSNP
rs1269098049 2691 dbSNP
rs1249512491 2698 dbSNP
rs1229962573 2699 dbSNP
rs1019215257 2702 dbSNP
rs1204429120 2706 dbSNP
rs1312757086 2716 dbSNP
rs1009202253 2721 dbSNP
rs148788452 2722 dbSNP
rs1056352321 2725 dbSNP
rs1215284421 2729 dbSNP
rs778773252 2729 dbSNP
rs1484245563 2734 dbSNP
rs199990942 2734 dbSNP
rs3184084 2734 dbSNP
rs1243238781 2737 dbSNP
rs1230812604 2738 dbSNP
rs937619812 2742 dbSNP
rs928869229 2743 dbSNP
rs1343819073 2746 dbSNP
rs1160798551 2751 dbSNP
rs1054428415 2752 dbSNP
rs1045388206 2756 dbSNP
rs550371369 2757 dbSNP
rs1359249870 2758 dbSNP
rs929612488 2761 dbSNP
rs1334693172 2778 dbSNP
rs1381907458 2787 dbSNP
rs936978263 2793 dbSNP
rs918335054 2794 dbSNP
rs1313822394 2800 dbSNP
rs1398135562 2806 dbSNP
rs1223444706 2808 dbSNP
rs762853057 2808 dbSNP
rs1279589920 2818 dbSNP
rs973888497 2820 dbSNP
rs962769773 2821 dbSNP
rs1243126229 2822 dbSNP
rs1307959131 2835 dbSNP
rs535208298 2836 dbSNP
rs567698763 2837 dbSNP
rs949411704 2840 dbSNP
rs1415722342 2854 dbSNP
rs1173603774 2860 dbSNP
rs1404671473 2862 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb HITS-CLIP data was present in GSM1084078. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_AbnovaAb HITS-CLIP data was present in GSM1084083. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_SigmaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000296591.5 | 3UTR | AAUGGUUUUUUUUUUUUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000296591.5 | 3UTR | AAUGGUUUUUUUUUUUUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084078
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep2_AbnovaAb
Location of target site ENST00000296591.5 | 3UTR | AAUGGUUUUUUUUUUUUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1084083
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_SigmaAb
Location of target site ENST00000296591.5 | 3UTR | GAAUGGUUUUUUUUUUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
168 hsa-miR-548t-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059365 ANP32E acidic nuclear phosphoprotein 32 family member E 2 2
MIRT072839 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 6
MIRT076945 PCGF2 polycomb group ring finger 2 2 6
MIRT083941 TFAP2C transcription factor AP-2 gamma 2 2
MIRT085401 ETS2 ETS proto-oncogene 2, transcription factor 2 2
MIRT109790 KLHL15 kelch like family member 15 2 2
MIRT114046 AKAP11 A-kinase anchoring protein 11 2 10
MIRT130165 TXNIP thioredoxin interacting protein 2 6
MIRT150013 MIDN midnolin 2 2
MIRT181258 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT205594 NCL nucleolin 2 2
MIRT222253 ACTB actin beta 2 4
MIRT245653 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT250947 CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 2 4
MIRT252497 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT271990 ARF1 ADP ribosylation factor 1 2 4
MIRT280804 RNF11 ring finger protein 11 2 2
MIRT293803 FEM1A fem-1 homolog A 2 2
MIRT318231 RREB1 ras responsive element binding protein 1 2 2
MIRT341455 ATP6V0B ATPase H+ transporting V0 subunit b 2 2
MIRT347413 CEBPG CCAAT/enhancer binding protein gamma 2 4
MIRT351860 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT357983 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT377094 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT407303 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT441564 LMOD3 leiomodin 3 2 2
MIRT442364 ZC3H12C zinc finger CCCH-type containing 12C 2 2
MIRT443228 ARL5B ADP ribosylation factor like GTPase 5B 2 2
MIRT443404 HMX3 H6 family homeobox 3 2 2
MIRT446055 NR5A2 nuclear receptor subfamily 5 group A member 2 2 2
MIRT448277 ZNF652 zinc finger protein 652 2 2
MIRT450822 KCNB1 potassium voltage-gated channel subfamily B member 1 2 2
MIRT453016 CCDC115 coiled-coil domain containing 115 2 17
MIRT454463 PPP2R2B protein phosphatase 2 regulatory subunit Bbeta 2 2
MIRT456360 CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 2 2
MIRT460007 DNALI1 dynein axonemal light intermediate chain 1 2 2
MIRT463154 ZNF385A zinc finger protein 385A 2 6
MIRT463766 YPEL2 yippee like 2 2 2
MIRT468310 SFT2D2 SFT2 domain containing 2 2 2
MIRT470668 POLR2D RNA polymerase II subunit D 2 4
MIRT478517 CTTN cortactin 2 2
MIRT480507 C11orf57 chromosome 11 open reading frame 57 2 2
MIRT484718 INHBA inhibin beta A subunit 2 12
MIRT485494 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT487302 SLC38A9 solute carrier family 38 member 9 2 2
MIRT487771 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 16
MIRT491876 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT494304 CEP120 centrosomal protein 120 2 2
MIRT495396 TRIM24 tripartite motif containing 24 2 2
MIRT495646 CDK1 cyclin dependent kinase 1 2 2
MIRT496665 TMEM237 transmembrane protein 237 2 2
MIRT496837 ZNF460 zinc finger protein 460 2 2
MIRT498638 CHD4 chromodomain helicase DNA binding protein 4 2 10
MIRT503928 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT506063 PPP2R2A protein phosphatase 2 regulatory subunit Balpha 2 2
MIRT506582 MIER3 MIER family member 3 2 4
MIRT506606 MAT2A methionine adenosyltransferase 2A 2 4
MIRT506844 KIF23 kinesin family member 23 2 6
MIRT508536 RPP14 ribonuclease P/MRP subunit p14 2 4
MIRT509669 ZNF354B zinc finger protein 354B 2 10
MIRT511170 MBNL3 muscleblind like splicing regulator 3 2 6
MIRT512147 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT512831 ID4 inhibitor of DNA binding 4, HLH protein 2 6
MIRT514558 XRCC3 X-ray repair cross complementing 3 2 4
MIRT515856 AJAP1 adherens junctions associated protein 1 2 4
MIRT521848 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT525364 SYNM synemin 2 2
MIRT527120 ARHGAP15 Rho GTPase activating protein 15 2 2
MIRT527271 FBLN2 fibulin 2 2 2
MIRT527439 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT527658 CD300E CD300e molecule 2 2
MIRT528334 TBC1D22B TBC1 domain family member 22B 2 2
MIRT529033 EXOC8 exocyst complex component 8 2 2
MIRT529321 PDE5A phosphodiesterase 5A 2 2
MIRT529677 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT529846 SMTN smoothelin 2 2
MIRT530385 ZNF431 zinc finger protein 431 2 2
MIRT530913 GPR85 G protein-coupled receptor 85 2 2
MIRT531794 KDR kinase insert domain receptor 2 2
MIRT532246 KLF2 Kruppel like factor 2 2 4
MIRT532658 CBX7 chromobox 7 2 2
MIRT533630 TMX3 thioredoxin related transmembrane protein 3 2 2
MIRT534811 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT534975 PSD3 pleckstrin and Sec7 domain containing 3 2 2
MIRT536588 ITPKB inositol-trisphosphate 3-kinase B 2 2
MIRT536779 HNRNPD heterogeneous nuclear ribonucleoprotein D 2 2
MIRT538764 CABLES1 Cdk5 and Abl enzyme substrate 1 2 2
MIRT539294 ANGEL2 angel homolog 2 2 2
MIRT539621 SHISA9 shisa family member 9 2 2
MIRT539651 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT540347 OPHN1 oligophrenin 1 2 2
MIRT540413 PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 2 2
MIRT541396 CDC27 cell division cycle 27 2 2
MIRT542916 HSBP1 heat shock factor binding protein 1 2 2
MIRT544710 EIF5A eukaryotic translation initiation factor 5A 2 4
MIRT544998 MFF mitochondrial fission factor 2 4
MIRT553289 TSPAN3 tetraspanin 3 2 2
MIRT553455 TNRC6C trinucleotide repeat containing 6C 2 2
MIRT553782 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT554656 ROBO1 roundabout guidance receptor 1 2 2
MIRT555104 PURB purine rich element binding protein B 2 2
MIRT557235 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT560861 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561545 SON SON DNA binding protein 2 2
MIRT561554 SLMO2 PRELI domain containing 3B 2 2
MIRT563764 ZNF678 zinc finger protein 678 2 2
MIRT565653 SIX4 SIX homeobox 4 2 2
MIRT568080 CELF2 CUGBP Elav-like family member 2 2 2
MIRT568759 MYBL1 MYB proto-oncogene like 1 2 2
MIRT569078 CADM2 cell adhesion molecule 2 2 2
MIRT569509 THYN1 thymocyte nuclear protein 1 2 2
MIRT571268 CDKN2AIP CDKN2A interacting protein 2 2
MIRT571809 PHF19 PHD finger protein 19 2 2
MIRT572554 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT573782 SLC24A4 solute carrier family 24 member 4 2 4
MIRT576441 Ccdc115 coiled-coil domain containing 115 2 10
MIRT576712 Slc30a3 solute carrier family 30 (zinc transporter), member 3 2 3
MIRT608377 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT608484 NKTR natural killer cell triggering receptor 2 6
MIRT610186 FAM49A family with sequence similarity 49 member A 2 2
MIRT611631 EDIL3 EGF like repeats and discoidin domains 3 2 2
MIRT613534 TRA2B transformer 2 beta homolog 2 2
MIRT616221 PTPN11 protein tyrosine phosphatase, non-receptor type 11 2 2
MIRT622370 SALL1 spalt like transcription factor 1 2 2
MIRT624371 CDK12 cyclin dependent kinase 12 2 2
MIRT624995 ZNF665 zinc finger protein 665 2 4
MIRT626875 AP3B1 adaptor related protein complex 3 beta 1 subunit 2 2
MIRT627737 RAP2B RAP2B, member of RAS oncogene family 2 4
MIRT628490 ADAT2 adenosine deaminase, tRNA specific 2 2 2
MIRT633647 PLEKHG7 pleckstrin homology and RhoGEF domain containing G7 2 4
MIRT634028 SLC30A3 solute carrier family 30 member 3 2 3
MIRT635923 GLTSCR2 NOP53 ribosome biogenesis factor 2 2
MIRT638287 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT641959 RNF115 ring finger protein 115 2 2
MIRT643573 CTNNA3 catenin alpha 3 2 2
MIRT645180 NOL9 nucleolar protein 9 2 4
MIRT647497 ZNF639 zinc finger protein 639 2 2
MIRT647682 PCK1 phosphoenolpyruvate carboxykinase 1 2 2
MIRT648422 MYOZ3 myozenin 3 2 2
MIRT650113 ZCCHC9 zinc finger CCHC-type containing 9 2 2
MIRT651076 ZNF518B zinc finger protein 518B 2 4
MIRT651415 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT651456 XKR4 XK related 4 2 2
MIRT653619 SLC30A4 solute carrier family 30 member 4 2 2
MIRT653637 SLC30A1 solute carrier family 30 member 1 2 2
MIRT654896 POU2F1 POU class 2 homeobox 1 2 2
MIRT656483 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT658016 GABRA4 gamma-aminobutyric acid type A receptor alpha4 subunit 2 2
MIRT658041 FZD10 frizzled class receptor 10 2 2
MIRT660093 BTBD3 BTB domain containing 3 2 2
MIRT663923 MAGEF1 MAGE family member F1 2 2
MIRT665882 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT669051 CEP128 centrosomal protein 128 2 2
MIRT669711 AAGAB alpha and gamma adaptin binding protein 2 2
MIRT686812 SNX2 sorting nexin 2 2 4
MIRT689883 SOD2 superoxide dismutase 2 2 2
MIRT693274 GLRX2 glutaredoxin 2 2 4
MIRT697056 BCAR1 BCAR1, Cas family scaffolding protein 2 2
MIRT703297 GID4 GID complex subunit 4 homolog 2 2
MIRT704087 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT707719 CDC6 cell division cycle 6 2 2
MIRT708136 GK5 glycerol kinase 5 (putative) 2 2
MIRT709212 KLHL30 kelch like family member 30 2 2
MIRT710062 RWDD2A RWD domain containing 2A 2 2
MIRT712770 POU6F2 POU class 6 homeobox 2 2 2
MIRT715073 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT715387 TADA3 transcriptional adaptor 3 2 2
MIRT717712 NCKAP1 NCK associated protein 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548t Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-548t Cisplatin 5460033 NSC119875 approved sensitive cell line (W1)
hsa-mir-548t Doxorubicin 31703 NSC123127 approved sensitive cell line (W1)
hsa-mir-548t Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-mir-548t Vincristine 5978 approved sensitive cell line (W1)
hsa-miR-548t-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (SW480, HCT-116)
hsa-miR-548t-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-548t-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)

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