pre-miRNA Information
pre-miRNA hsa-mir-4793   
Genomic Coordinates chr3: 48644194 - 48644280
Description Homo sapiens miR-4793 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4793-3p
Sequence 58| UCUGCACUGUGAGUUGGCUGGCU |80
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5899925 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs779602935 6 dbSNP
rs757908486 7 dbSNP
rs1422853760 15 dbSNP
rs377721296 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol NDUFA10   
Synonyms CI-42KD, CI-42k
Description NADH:ubiquinone oxidoreductase subunit A10
Transcript NM_004544   
Expression
Putative miRNA Targets on NDUFA10
3'UTR of NDUFA10
(miRNA target sites are highlighted)
>NDUFA10|NM_004544|3'UTR
   1 ACGGGCCGCCTTCTGCTCCAGCTGCATCACAGTGATGGCCAAGCTGCATCAGCCGCACTCTCCTGGACGCCATATAGCTT
  81 TAAGATCGGGGGAGGGTAAATAATGCAAAAATTGCACAGTGGAAGAAGGGGTCTCACAAAAAGCAATCCATCCTGTAGTA
 161 TAGGTAATGGAGTTGGGGGAAGCAGCTTCCATTCTGGATGTTTGGAACCCTTTAGCTTTGTTTTGGAATGGCCCACCATT
 241 CTCACTGGAAAACAGTGGTCTGCTGTGAAAGGCCAGCTCTCGGCAGCCCCTGTGGTTTCAGCGCTGCCGCTCTGTGTCAT
 321 TCAGGTTGTGCACATTGTTTTTCTTCTGACTTCCAGAAATAAAAGTGTTTCCATGGGAATTTCCCCATCGTACGTCTATG
 401 TGCGTGCGGGCACGTCGAAACTGCACACGTGCACACACGCTGCTCTGGGCCCTGTTTGGTGTGGTGTGGTTTAATTGAGG
 481 CTTACATTATGCTGAAGAGTTTTTCTAAAGGCCTACTGTATTTATTTTAGTAATGTGCTACATTAGAGTAGAAAAAATAA
 561 GAACGTGAAGAAGAAATAGCAAAAGGAGAAAATTACCACAGATTTACAGAACAATATGTTTTAAGAGAGACGTTGAGAAA
 641 GATTCACGTGGCCGTCCTCAGCGTCTCAAACTCCTTTGAAGGGAGATTTGAGCTTAGGCTGTTGATGACATAAGATGCAA
 721 AAGCAAAATAATATACTCTCTTTATTACCCAGAAAATCAAGTTGCCAGTCAAAACTGAGAAATGAGAAAGAAAATCAGAT
 801 TTCTTTATTCATCTCTGTTGAAGCCTAGAAAACCAAAACAAGCTGGTTGTGGTTCAGCATCATGGTTTAGGAATCAAGCT
 881 GTCAGTTGTGAGTCCTACTGAACTGTGGGTTTTCCACTGTAAAGCTCCACTGTGTCCATTAGGAATCAGGCTGCCAGTTG
 961 TGAGTCCTACTGAACTGTGGGTTTTCCACTGTAAAGCTCCACTGTGTCCAATATGGTAGCTCCTAGCCACATGTGGGTAT
1041 TGAAATTTAAATGAGCTAAAATGTAATAGAGTTTAAAATTGGGTTCCTTGGTTGCACTGGCCATAGTTCAGGCACTCCAC
1121 AGCCGCCTGTGGGCAGTAGTTCCAGTGCTGGTGCAGAGGACGATGCTCTGCTCCCCGCGGAAGCTCTACCAGGCCTCGCT
1201 GCTGCGGAGCATGCGAAGAAGATGCACACTCCTTCCCTCCTTGCGTCCGCCTGCCTTTTTCCCTCTCCCCTTCCTTCCCT
1281 CCTTCTTTCCTCCTCCTTCCCTCCCTTCCTTTCTTCCTTCCATCTGTCCTTGTTTTCCTCCCTTCCCTTCCTCCCTGCCT
1361 CTTTCCTTCCCTCCTTCTCTTCCTTCCTTCCGTCTGTCCTTGTTTTCCTCCCTGCCTCTTTCCTTCCCTCCTTCTCTTCC
1441 TTCCTTCCTTCCGTCTGTCCTTGTTTTCCTCCCTTCCCTTCCTCCCTGCCTCCTTCCTTGTTTTAAGAATTTGAAAATAA
1521 AGTTTCCCAGGAGTTTTGAATTGGAGTCGAGATTTAAGTGGCTGAAGTTTTGCATTTCACTAGGAAACCAACAGCTTTAA
1601 TCATGAAATGAAAGCACAGCTGGGCATTGGGCCAGTCACAGAGTGTCTTTTGCTCTGAGCACTTCACAAACCCATTGTGG
1681 AGGGGAGGAAAGAAAAAGAAAGCCATCTTTAATTATCTTAGCTGTTCCTAATGTCTTTGGCTGCAAAGAGCTAGCTGTTT
1761 CCTTCAACCTTGGTGGTTGCACGGGTAGTGTCCTCAGCAGTGAGAGGGCAGGTCTGCCCTGTGGTCAGGATTGCCCTTGT
1841 GAGGGGCAGAGCTCTCCAACCATGCAGGGCTCCGTGTCGGCATGGTGTGGACTCGGGTGCTCTGATCATCCCCTGTGTTT
1921 GCGTCTGACCCTGTGTGGTTGCATTCCCTTGATGGAGTGGGAAGTATGTAATTTGTAGTGCTGAGGACATTCGTCTGTTT
2001 GATTTTCTGGTGTTTTCAATGACATGCATGTTCAGCAGAGAAAGATGAATAAACACTGTCCAATTCTTCTCTCCACATAG
2081 AAGCCTCAAGAAGAGGTGAGGAGATGCCCCGATTTCCTTATTTCAGAGCAGTACATGCGTTCGTCTCACGAAAGCTCTTA
2161 CAACTAAAACAACAGCACCAACAAACCAGGATCAAAATAATCGTGCATTTTCCAGGATTCCATGTTGGACTTCTCAGTGC
2241 TTTGGAGATCAGGAAATAATCATGCTGTTGCAGCAGTATGGTTTTGTGTCTGGATTTTATTCATACAGGCATGTGTTTAC
2321 AGGCATGAGAATTCTGTATTGAAAAGAAAGTCCTTGTTTTTTTCTAACGTATCTTTCTGTTCCATCAACTGTTAAAACCA
2401 AATTGTTAAGAACATTGAGCTTCTTAGGAGAGATTACATGCAGCTACTTAGGACCACCTCAGCAAAATGGAGTTGCCTGG
2481 GTAGATAGCAGCAGCAGCTCACCAGCCCCACGCTGCCAGGCTGCTGGCTGCTGTCCACCAGGCAGCTGTGGAACCTCCAT
2561 GTTCTGCCTAGGTGTTGTGGCAAGAACAGCAGGGAAACAGGCGGCCGCCTCCAGGCCACAGGTGGACCCAGGGACCTTCA
2641 GTTACGCCGCTTCAATTGAATTCGTGGTGGTTTCTCTGCTACAGCAGAAGTGGAAGAAGCTCTTGTCTTGTTTGGCATTT
2721 GTCCCATTTTTTGGCTAATAATTGGCTTTGAATTTCTCTGTGCCCTGCTTACCAATTATAGCTTTCTGGATTGGCTGTTC
2801 TTAGCAGTGCAAATGTCAATGCAAAGAAGCAAGCAGGCGGCTACTTTCTGGGAAGAAGCATAGTCCGTGCTCACACTGGA
2881 TATAAATCTGCAAGATTTGGGGGTTTGGCAAAATAGGGGTGGAGGGAAAGCTGCCATGGCTGTCAGAAATTGGGGCTTTT
2961 TGAAGAAAAGCTTGTGTAGGCATCAGCCACTGGCTGGCCAGAATTCCATGAATGGAAGCAGGTGCCCGAGTGATCTGGGG
3041 CTTTACATGTGGATATAAATAGAAGCCGGGAGCCTGAGGCTTTGCTTTAGGAAAATCATGAGCCAGAAAACAGAGGAGGT
3121 GATTGTCAGTAGTCACCTCACGCCGCTAGTGTTTTCTAATACTCTCTCGAATTGTCAAAGCAAAGGACCTTATAACAGCA
3201 ACACGTGTGTGACTCGAAGCAGCGAGCTTCCCTTGGGAAAAGGAGCCTCTTCTCAGCAGAGGGTCCCAGCCTTTCTGTCC
3281 TTCCCCATCGGAATGCCAGGCTCTGTGAGTTTGGATGTTGGACATTGCCACCTGAATTCCAGGAGGCCGGGGAGCTCCAG
3361 TGATGGACTTGTCCCCAAAAGAGTGGTGCTGTTCTCAGAGCCATAAATGTTCCACTGAAAGTGTCTGTCCCCTGGCTCAC
3441 GCTGGCTGCGCTTGCTTGAAGGAGGCTGATTTAAGGGTTCTAATAGGAAGACAAATGAAACTGTCAAATTTTATCTTTAA
3521 GCATGTGAGTAAGTTTGCTCATTCGCTTTTACTATTGATGTATAGTTTTAAAATTCTTAATTTAAAAATTATTTTAATAG
3601 TAAATTTTTCACAAGTGAACACTTTTTATCTTTAAATTAAAATTCTGAAGCTCCCTAGTTAGTTAGATCCAATTGCTGGT
3681 TACATTTTGGGAAGCTCTCATTTTAGTGCTATGTAGTTTCATTGAATAAACATGTTTTTAATGAGAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucGGUCGGU-UGAGU-GUCACGUcu 5'
            :::||::  ||:| |||||||  
Target 5' gaTTGGCTGTTCTTAGCAGTGCAaa 3'
2789 - 2813 137.00 -14.00
2
miRNA  3' ucgGUC--GGUUGAGUGUCACGUCu 5'
             :||  |||:: | ::|||||| 
Target 5' cagTAGTTCCAGTGC-TGGTGCAGa 3'
1134 - 1157 137.00 -16.30
3
miRNA  3' ucggucgGUUGAGUGUCACGUCu 5'
                 :||:|:::||||| | 
Target 5' aagtatgTAATTTGTAGTGCTGa 3'
1962 - 1984 128.00 -15.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
138441 2 ClinVar
387759 3 ClinVar
389483 8 ClinVar
335199 105 ClinVar
895993 183 ClinVar
335198 308 ClinVar
335197 361 ClinVar
895992 372 ClinVar
335196 389 ClinVar
895707 396 ClinVar
335195 407 ClinVar
335194 412 ClinVar
335193 414 ClinVar
898689 428 ClinVar
898688 435 ClinVar
335192 438 ClinVar
898687 445 ClinVar
335191 489 ClinVar
335190 546 ClinVar
897538 548 ClinVar
335189 631 ClinVar
897057 632 ClinVar
335188 647 ClinVar
897056 679 ClinVar
897055 732 ClinVar
335187 740 ClinVar
895642 765 ClinVar
895641 804 ClinVar
895640 857 ClinVar
898628 861 ClinVar
335186 925 ClinVar
335185 1011 ClinVar
898627 1047 ClinVar
897471 1057 ClinVar
897470 1124 ClinVar
335184 1129 ClinVar
897469 1161 ClinVar
335183 1189 ClinVar
896985 1198 ClinVar
896984 1206 ClinVar
335182 1212 ClinVar
335181 1214 ClinVar
895578 1217 ClinVar
335180 1229 ClinVar
895577 1245 ClinVar
335179 1262 ClinVar
898574 1303 ClinVar
898573 1382 ClinVar
898572 1391 ClinVar
897411 1453 ClinVar
897410 1482 ClinVar
897409 1486 ClinVar
897408 1586 ClinVar
896906 1594 ClinVar
896905 1665 ClinVar
896904 1702 ClinVar
896903 1709 ClinVar
895504 1878 ClinVar
895503 1879 ClinVar
335178 1884 ClinVar
335177 1914 ClinVar
335176 1915 ClinVar
335175 1924 ClinVar
898494 1927 ClinVar
898493 1930 ClinVar
898492 1943 ClinVar
335174 1957 ClinVar
897336 1992 ClinVar
897335 2009 ClinVar
335173 2042 ClinVar
896840 2046 ClinVar
896839 2079 ClinVar
335172 2111 ClinVar
896838 2133 ClinVar
895441 2136 ClinVar
335171 2149 ClinVar
335170 2192 ClinVar
895440 2202 ClinVar
898430 2242 ClinVar
335169 2297 ClinVar
335168 2309 ClinVar
898429 2350 ClinVar
897254 2382 ClinVar
335167 2397 ClinVar
897253 2455 ClinVar
335166 2495 ClinVar
897252 2511 ClinVar
335165 2602 ClinVar
896775 2648 ClinVar
335164 2649 ClinVar
896774 2659 ClinVar
335163 2685 ClinVar
895372 2838 ClinVar
895371 2900 ClinVar
335162 2997 ClinVar
898350 3009 ClinVar
898349 3052 ClinVar
335161 3067 ClinVar
335160 3075 ClinVar
897183 3095 ClinVar
335159 3098 ClinVar
335158 3113 ClinVar
335157 3141 ClinVar
896711 3143 ClinVar
896710 3175 ClinVar
335156 3204 ClinVar
335155 3205 ClinVar
895291 3301 ClinVar
895290 3347 ClinVar
335154 3349 ClinVar
895289 3403 ClinVar
335153 3408 ClinVar
898284 3409 ClinVar
335152 3450 ClinVar
897122 3456 ClinVar
897121 3490 ClinVar
897120 3544 ClinVar
335151 3557 ClinVar
896661 3711 ClinVar
896660 3724 ClinVar
COSN30447391 3 COSMIC
COSN30460146 3 COSMIC
COSN13982405 8 COSMIC
COSN31555042 10 COSMIC
COSN26986178 19 COSMIC
COSN31614489 55 COSMIC
COSN30191091 60 COSMIC
COSN28891299 69 COSMIC
COSN30167835 87 COSMIC
COSN31554042 114 COSMIC
COSN31522956 116 COSMIC
COSN31526693 209 COSMIC
COSN6176280 275 COSMIC
COSN20903143 648 COSMIC
COSN32167348 667 COSMIC
COSN32063790 696 COSMIC
COSN54002 870 COSMIC
COSN26590262 1392 COSMIC
COSN24536291 1833 COSMIC
COSN4803398 1835 COSMIC
COSN32062354 1923 COSMIC
COSN31792676 2123 COSMIC
COSN5790651 2230 COSMIC
COSN1833235 2719 COSMIC
COSN23291436 3350 COSMIC
COSN8768165 3715 COSMIC
rs13424612 414 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs139926757 2 dbSNP
rs758335453 3 dbSNP
rs1028486833 5 dbSNP
rs1164582099 7 dbSNP
rs370647399 8 dbSNP
rs765215065 11 dbSNP
rs759719918 13 dbSNP
rs776821231 18 dbSNP
rs377448595 21 dbSNP
rs1194477516 22 dbSNP
rs948889161 24 dbSNP
rs1188021406 26 dbSNP
rs1420187859 28 dbSNP
rs749435666 30 dbSNP
rs751621613 33 dbSNP
rs1368801845 44 dbSNP
rs1037016964 46 dbSNP
rs1211805800 47 dbSNP
rs1357357055 49 dbSNP
rs916106145 54 dbSNP
rs373357333 55 dbSNP
rs745939274 60 dbSNP
rs538305440 68 dbSNP
rs1281119678 69 dbSNP
rs866125917 70 dbSNP
rs1442688327 72 dbSNP
rs1349427797 78 dbSNP
rs1210974572 84 dbSNP
rs146009897 87 dbSNP
rs774655263 88 dbSNP
rs1217445034 95 dbSNP
rs886055825 105 dbSNP
rs948621986 114 dbSNP
rs1186597921 120 dbSNP
rs1464210062 123 dbSNP
rs777726262 127 dbSNP
rs1455684218 130 dbSNP
rs1054733143 133 dbSNP
rs758629221 135 dbSNP
rs955399107 137 dbSNP
rs1030153362 138 dbSNP
rs201572182 142 dbSNP
rs900309146 146 dbSNP
rs1319216725 151 dbSNP
rs1017450915 157 dbSNP
rs1302100828 168 dbSNP
rs1006060188 171 dbSNP
rs1179414905 172 dbSNP
rs112660586 183 dbSNP
rs771276735 185 dbSNP
rs1237885387 187 dbSNP
rs954335913 191 dbSNP
rs1028429856 207 dbSNP
rs1254871040 217 dbSNP
rs1468837136 221 dbSNP
rs1047675074 234 dbSNP
rs1176412206 236 dbSNP
rs1246227666 238 dbSNP
rs928964380 256 dbSNP
rs1160518800 257 dbSNP
rs906894676 261 dbSNP
rs1469523829 265 dbSNP
rs567161544 268 dbSNP
rs1045874487 279 dbSNP
rs1457100288 280 dbSNP
rs1157355340 281 dbSNP
rs948517736 282 dbSNP
rs1273343295 283 dbSNP
rs1397088058 290 dbSNP
rs1442310544 302 dbSNP
rs916037891 305 dbSNP
rs8369 308 dbSNP
rs936199303 309 dbSNP
rs1443731152 310 dbSNP
rs924856078 314 dbSNP
rs1349479369 316 dbSNP
rs1226394062 318 dbSNP
rs1224203799 325 dbSNP
rs184710938 333 dbSNP
rs1274851562 334 dbSNP
rs563062402 338 dbSNP
rs16842575 343 dbSNP
rs1213007022 355 dbSNP
rs1287562324 358 dbSNP
rs778261754 361 dbSNP
rs1444924410 365 dbSNP
rs544512667 365 dbSNP
rs143693330 372 dbSNP
rs1180225165 373 dbSNP
rs148754803 373 dbSNP
rs1435882837 374 dbSNP
rs1348162149 375 dbSNP
rs1161924335 383 dbSNP
rs1163253272 387 dbSNP
rs539829771 389 dbSNP
rs1012835288 390 dbSNP
rs1380138894 391 dbSNP
rs1328914270 392 dbSNP
rs562540452 393 dbSNP
rs1006004699 394 dbSNP
rs73103629 396 dbSNP
rs1267638461 398 dbSNP
rs571297353 403 dbSNP
rs935812059 404 dbSNP
rs1487220803 406 dbSNP
rs74614612 407 dbSNP
rs1196263540 408 dbSNP
rs546052985 412 dbSNP
rs1203287055 413 dbSNP
rs13424612 414 dbSNP
rs911557145 416 dbSNP
rs1187252009 417 dbSNP
rs906840256 422 dbSNP
rs1045417498 426 dbSNP
rs557106858 428 dbSNP
rs761092348 432 dbSNP
rs371357946 434 dbSNP
rs1054245819 435 dbSNP
rs13396556 438 dbSNP
rs924803692 439 dbSNP
rs563264912 445 dbSNP
rs983262750 449 dbSNP
rs1401217255 454 dbSNP
rs112717235 456 dbSNP
rs1296695213 457 dbSNP
rs1024291221 458 dbSNP
rs1437004495 462 dbSNP
rs1041967962 464 dbSNP
rs1012948329 473 dbSNP
rs1486102157 477 dbSNP
rs111927644 478 dbSNP
rs1254541566 485 dbSNP
rs886055824 489 dbSNP
rs1194529274 493 dbSNP
rs1390097627 499 dbSNP
rs1033306083 500 dbSNP
rs1000127056 503 dbSNP
rs903010491 504 dbSNP
rs1041591910 505 dbSNP
rs550251314 505 dbSNP
rs922561525 509 dbSNP
rs944443018 512 dbSNP
rs1382567308 515 dbSNP
rs890233432 518 dbSNP
rs1362913811 519 dbSNP
rs1226322294 520 dbSNP
rs975441037 525 dbSNP
rs1487947950 532 dbSNP
rs1260973982 539 dbSNP
rs1312801952 540 dbSNP
rs192485848 546 dbSNP
rs909957646 549 dbSNP
rs1353375270 552 dbSNP
rs984198239 563 dbSNP
rs951861735 564 dbSNP
rs1026124256 566 dbSNP
rs1463912433 577 dbSNP
rs762663112 584 dbSNP
rs1038991498 587 dbSNP
rs941654939 597 dbSNP
rs1310663287 598 dbSNP
rs1173600561 599 dbSNP
rs534298146 606 dbSNP
rs971349516 607 dbSNP
rs1158099841 613 dbSNP
rs1386128973 614 dbSNP
rs1443045580 616 dbSNP
rs1219304112 617 dbSNP
rs566826310 618 dbSNP
rs971456756 621 dbSNP
rs1024354077 622 dbSNP
rs10933622 631 dbSNP
rs189306598 632 dbSNP
rs1054194611 633 dbSNP
rs1229440985 643 dbSNP
rs1267930487 644 dbSNP
rs116254382 647 dbSNP
rs903322345 653 dbSNP
rs1266537901 654 dbSNP
rs1487904007 659 dbSNP
rs1302627845 662 dbSNP
rs1000519962 663 dbSNP
rs745616036 669 dbSNP
rs1180941155 670 dbSNP
rs1041915794 674 dbSNP
rs374065697 679 dbSNP
rs922873486 681 dbSNP
rs1165650883 685 dbSNP
rs1008656320 692 dbSNP
rs1349218548 701 dbSNP
rs1457516296 708 dbSNP
rs1040392454 710 dbSNP
rs370644631 714 dbSNP
rs909908734 723 dbSNP
rs1190002975 727 dbSNP
rs1349086163 732 dbSNP
rs1235506700 733 dbSNP
rs1424315252 734 dbSNP
rs886055823 740 dbSNP
rs1050095780 743 dbSNP
rs1219954288 744 dbSNP
rs995889476 744 dbSNP
rs984147819 745 dbSNP
rs1483065194 760 dbSNP
rs930077031 761 dbSNP
rs144208727 765 dbSNP
rs756868551 771 dbSNP
rs1482428727 783 dbSNP
rs971877523 789 dbSNP
rs1037409819 796 dbSNP
rs753535269 796 dbSNP
rs1422021026 804 dbSNP
rs1172387962 810 dbSNP
rs1356355663 823 dbSNP
rs1307719146 824 dbSNP
rs971677162 827 dbSNP
rs1024217966 845 dbSNP
rs1199431572 847 dbSNP
rs1317388178 849 dbSNP
rs1303822860 857 dbSNP
rs1256221206 860 dbSNP
rs551167199 861 dbSNP
rs1227117684 876 dbSNP
rs780999956 877 dbSNP
rs958381569 878 dbSNP
rs1032690061 880 dbSNP
rs770794808 882 dbSNP
rs902936788 903 dbSNP
rs950171284 908 dbSNP
rs559125304 909 dbSNP
rs1394673339 911 dbSNP
rs1482113691 914 dbSNP
rs1188275717 916 dbSNP
rs1375935265 919 dbSNP
rs998354614 921 dbSNP
rs1168003470 923 dbSNP
rs149563558 925 dbSNP
rs958859250 928 dbSNP
rs1416401257 936 dbSNP
rs7581997 949 dbSNP
rs1358953766 952 dbSNP
rs7605695 954 dbSNP
rs1291206296 955 dbSNP
rs1039936753 969 dbSNP
rs942962657 976 dbSNP
rs1166462236 977 dbSNP
rs1349360870 990 dbSNP
rs779228422 993 dbSNP
rs1219465078 999 dbSNP
rs1458383879 1000 dbSNP
rs1277470418 1003 dbSNP
rs925929195 1010 dbSNP
rs575477219 1011 dbSNP
rs1248606807 1019 dbSNP
rs1367799758 1021 dbSNP
rs1464412026 1026 dbSNP
rs1186541884 1028 dbSNP
rs1246276978 1033 dbSNP
rs967797038 1037 dbSNP
rs1173446635 1039 dbSNP
rs541016943 1057 dbSNP
rs1238498926 1059 dbSNP
rs1161791519 1061 dbSNP
rs1389794707 1063 dbSNP
rs1179558054 1066 dbSNP
rs1008772249 1068 dbSNP
rs930024837 1071 dbSNP
rs1211689803 1078 dbSNP
rs1273927316 1081 dbSNP
rs1436552256 1081 dbSNP
rs1365009047 1086 dbSNP
rs538644801 1087 dbSNP
rs1225073744 1089 dbSNP
rs1268550273 1093 dbSNP
rs1328154740 1094 dbSNP
rs1206745900 1095 dbSNP
rs1274972095 1096 dbSNP
rs879404782 1106 dbSNP
rs1265404694 1118 dbSNP
rs1199645302 1120 dbSNP
rs918670909 1121 dbSNP
rs982638607 1123 dbSNP
rs754187471 1124 dbSNP
rs563484603 1125 dbSNP
rs886055822 1129 dbSNP
rs991391595 1130 dbSNP
rs1004521293 1132 dbSNP
rs868248208 1133 dbSNP
rs1310438365 1142 dbSNP
rs1405480681 1144 dbSNP
rs958619020 1150 dbSNP
rs184925264 1161 dbSNP
rs1347561308 1162 dbSNP
rs576867152 1164 dbSNP
rs967067161 1168 dbSNP
rs1327391546 1169 dbSNP
rs1386867737 1173 dbSNP
rs1389303228 1174 dbSNP
rs1161402488 1176 dbSNP
rs1020030582 1177 dbSNP
rs574644603 1178 dbSNP
rs901315870 1179 dbSNP
rs1018872746 1184 dbSNP
rs531407321 1185 dbSNP
rs66534347 1189 dbSNP
rs888702846 1190 dbSNP
rs750959347 1195 dbSNP
rs895986487 1197 dbSNP
rs143353868 1198 dbSNP
rs1370519722 1202 dbSNP
rs573407539 1205 dbSNP
rs192203978 1206 dbSNP
rs886055821 1212 dbSNP
rs546735567 1214 dbSNP
rs1424340430 1215 dbSNP
rs1489556544 1216 dbSNP
rs116403651 1217 dbSNP
rs1407809535 1223 dbSNP
rs55998047 1229 dbSNP
rs1351904022 1232 dbSNP
rs1243997485 1241 dbSNP
rs187916829 1245 dbSNP
rs937196617 1248 dbSNP
rs1230666669 1249 dbSNP
rs747945253 1261 dbSNP
rs759194775 1262 dbSNP
rs1482867849 1265 dbSNP
rs546433533 1269 dbSNP
rs1330060335 1274 dbSNP
rs1443287862 1279 dbSNP
rs1187543084 1281 dbSNP
rs978701150 1284 dbSNP
rs967014840 1290 dbSNP
rs1028763618 1292 dbSNP
rs974631724 1292 dbSNP
rs963555273 1298 dbSNP
rs575940810 1303 dbSNP
rs1173915238 1304 dbSNP
rs535746911 1307 dbSNP
rs1395237474 1313 dbSNP
rs139219798 1321 dbSNP
rs1396594014 1322 dbSNP
rs1298446886 1332 dbSNP
rs1024688576 1336 dbSNP
rs1225523668 1338 dbSNP
rs1257977622 1339 dbSNP
rs546808621 1346 dbSNP
rs528159890 1355 dbSNP
rs1007469382 1357 dbSNP
rs1200219463 1357 dbSNP
rs1466663963 1358 dbSNP
rs1189720641 1359 dbSNP
rs1246899118 1376 dbSNP
rs1447065479 1379 dbSNP
rs111337344 1382 dbSNP
rs1196808643 1388 dbSNP
rs552149779 1391 dbSNP
rs1170624211 1392 dbSNP
rs1319730214 1392 dbSNP
rs1457713116 1392 dbSNP
rs1364633017 1398 dbSNP
rs994402704 1400 dbSNP
rs1380589273 1407 dbSNP
rs1303741382 1408 dbSNP
rs1056071376 1409 dbSNP
rs530464876 1414 dbSNP
rs897139869 1416 dbSNP
rs111849093 1422 dbSNP
rs1281150257 1439 dbSNP
rs904692755 1440 dbSNP
rs1268048428 1443 dbSNP
rs1200743153 1448 dbSNP
rs182914384 1452 dbSNP
rs1432254362 1453 dbSNP
rs192964209 1453 dbSNP
rs371644364 1453 dbSNP
rs1196232425 1454 dbSNP
rs1413909192 1456 dbSNP
rs913232119 1472 dbSNP
rs1219955132 1481 dbSNP
rs1472793135 1481 dbSNP
rs557576958 1482 dbSNP
rs746931112 1486 dbSNP
rs1295395339 1489 dbSNP
rs921822194 1492 dbSNP
rs933224310 1492 dbSNP
rs1386437839 1496 dbSNP
rs1398011350 1500 dbSNP
rs1352790938 1501 dbSNP
rs975081466 1507 dbSNP
rs1288329279 1509 dbSNP
rs925797098 1527 dbSNP
rs1042969617 1548 dbSNP
rs559570999 1549 dbSNP
rs912864786 1552 dbSNP
rs963201887 1563 dbSNP
rs541253813 1564 dbSNP
rs976828657 1573 dbSNP
rs1415301731 1583 dbSNP
rs1483288404 1586 dbSNP
rs1181150194 1590 dbSNP
rs773071160 1594 dbSNP
rs1174485446 1595 dbSNP
rs950473001 1602 dbSNP
rs1024636112 1609 dbSNP
rs1457469637 1614 dbSNP
rs1193647280 1616 dbSNP
rs1477124606 1622 dbSNP
rs1239621002 1629 dbSNP
rs1372623669 1639 dbSNP
rs1410619767 1643 dbSNP
rs1188652717 1645 dbSNP
rs1371554837 1649 dbSNP
rs1013230689 1653 dbSNP
rs1314058965 1665 dbSNP
rs1320652588 1666 dbSNP
rs1243109838 1667 dbSNP
rs1442151351 1670 dbSNP
rs751441059 1680 dbSNP
rs1342472196 1683 dbSNP
rs1200063176 1691 dbSNP
rs1203937951 1693 dbSNP
rs894833109 1699 dbSNP
rs573283419 1700 dbSNP
rs1002202532 1703 dbSNP
rs1444143018 1707 dbSNP
rs562457080 1709 dbSNP
rs985205056 1710 dbSNP
rs952863841 1714 dbSNP
rs1430654965 1726 dbSNP
rs904681126 1730 dbSNP
rs1043657033 1734 dbSNP
rs772069337 1738 dbSNP
rs1450616123 1739 dbSNP
rs1010302275 1743 dbSNP
rs1447045920 1744 dbSNP
rs748134391 1746 dbSNP
rs891909500 1750 dbSNP
rs148009367 1751 dbSNP
rs779136730 1760 dbSNP
rs994351745 1767 dbSNP
rs933298033 1768 dbSNP
rs1210537536 1779 dbSNP
rs575499828 1783 dbSNP
rs941983829 1787 dbSNP
rs1450160425 1795 dbSNP
rs1186205729 1796 dbSNP
rs1025263989 1798 dbSNP
rs1013995479 1800 dbSNP
rs1401206166 1805 dbSNP
rs895176449 1808 dbSNP
rs1055597705 1809 dbSNP
rs1177286711 1814 dbSNP
rs1468713624 1816 dbSNP
rs1323062877 1819 dbSNP
rs1170018534 1824 dbSNP
rs1433699139 1825 dbSNP
rs1408765630 1829 dbSNP
rs1219409722 1839 dbSNP
rs1300343708 1840 dbSNP
rs548811696 1843 dbSNP
rs1321062860 1851 dbSNP
rs1416613544 1857 dbSNP
rs983719674 1862 dbSNP
rs1164299211 1872 dbSNP
rs1000966985 1874 dbSNP
rs80067639 1878 dbSNP
rs143421241 1879 dbSNP
rs945908663 1881 dbSNP
rs891704476 1883 dbSNP
rs886055820 1884 dbSNP
rs991912446 1887 dbSNP
rs1041000476 1894 dbSNP
rs943689107 1895 dbSNP
rs1162071659 1899 dbSNP
rs1001791063 1904 dbSNP
rs969400603 1907 dbSNP
rs1021780367 1910 dbSNP
rs1010330512 1915 dbSNP
rs144590599 1915 dbSNP
rs886055819 1915 dbSNP
rs1292576017 1916 dbSNP
rs377048112 1918 dbSNP
rs1196191049 1922 dbSNP
rs985154313 1923 dbSNP
rs138899326 1924 dbSNP
rs773325795 1924 dbSNP
rs997562256 1926 dbSNP
rs1227609332 1927 dbSNP
rs535714073 1930 dbSNP
rs1282264400 1936 dbSNP
rs1453331618 1940 dbSNP
rs1222676678 1941 dbSNP
rs148829605 1943 dbSNP
rs1449330367 1944 dbSNP
rs1489976851 1950 dbSNP
rs1377898081 1953 dbSNP
rs4854069 1957 dbSNP
rs961599813 1968 dbSNP
rs764838080 1970 dbSNP
rs941946977 1971 dbSNP
rs1405429775 1992 dbSNP
rs373034894 1992 dbSNP
rs992447019 1993 dbSNP
rs570521026 1995 dbSNP
rs370309206 2009 dbSNP
rs550532335 2010 dbSNP
rs534978507 2017 dbSNP
rs1000916715 2019 dbSNP
rs1285878997 2023 dbSNP
rs1383852930 2026 dbSNP
rs1160796440 2028 dbSNP
rs991901072 2030 dbSNP
rs903943478 2036 dbSNP
rs1291371070 2039 dbSNP
rs886055818 2042 dbSNP
rs1357600053 2044 dbSNP
rs748477582 2045 dbSNP
rs1207504617 2047 dbSNP
rs1253009764 2048 dbSNP
rs1338546526 2056 dbSNP
rs1437602296 2057 dbSNP
rs1379326344 2065 dbSNP
rs1239698954 2067 dbSNP
rs959148144 2072 dbSNP
rs1162409585 2083 dbSNP
rs1268319736 2086 dbSNP
rs1382798930 2093 dbSNP
rs757816596 2108 dbSNP
rs926291220 2110 dbSNP
rs752139055 2111 dbSNP
rs1168764407 2114 dbSNP
rs1010478209 2123 dbSNP
rs891655302 2127 dbSNP
rs6736791 2133 dbSNP
rs943989946 2136 dbSNP
rs889422856 2138 dbSNP
rs146745444 2139 dbSNP
rs764782541 2142 dbSNP
rs781664989 2143 dbSNP
rs570872300 2149 dbSNP
rs1252093639 2166 dbSNP
rs1287957056 2167 dbSNP
rs931018420 2168 dbSNP
rs1281116434 2170 dbSNP
rs1443519574 2173 dbSNP
rs1352653724 2175 dbSNP
rs1183454996 2185 dbSNP
rs187345323 2186 dbSNP
rs900616226 2188 dbSNP
rs886055817 2192 dbSNP
rs1017702652 2193 dbSNP
rs548223995 2194 dbSNP
rs1294193154 2195 dbSNP
rs1174140389 2197 dbSNP
rs77614498 2202 dbSNP
rs1364233761 2203 dbSNP
rs1235397498 2206 dbSNP
rs550306400 2207 dbSNP
rs918110143 2222 dbSNP
rs1047646456 2223 dbSNP
rs1404068629 2231 dbSNP
rs1420727673 2235 dbSNP
rs111969519 2242 dbSNP
rs896318219 2245 dbSNP
rs959655750 2250 dbSNP
rs541218728 2254 dbSNP
rs1326102675 2257 dbSNP
rs1033639224 2262 dbSNP
rs760338157 2264 dbSNP
rs1434532917 2265 dbSNP
rs1340616423 2271 dbSNP
rs1425309480 2278 dbSNP
rs1203660508 2292 dbSNP
rs1190099242 2294 dbSNP
rs773090030 2297 dbSNP
rs968075580 2302 dbSNP
rs1265286679 2305 dbSNP
rs1021037794 2306 dbSNP
rs1132778 2309 dbSNP
rs761329231 2311 dbSNP
rs979222543 2311 dbSNP
rs1214001234 2318 dbSNP
rs1314136811 2320 dbSNP
rs1302133787 2328 dbSNP
rs748108154 2335 dbSNP
rs182747766 2336 dbSNP
rs190524549 2347 dbSNP
rs1218747092 2350 dbSNP
rs1343674500 2352 dbSNP
rs1280655924 2364 dbSNP
rs1008530479 2368 dbSNP
rs545952285 2369 dbSNP
rs1457664175 2370 dbSNP
rs889704931 2371 dbSNP
rs1289543938 2382 dbSNP
rs575707167 2388 dbSNP
rs989013033 2389 dbSNP
rs1325768177 2394 dbSNP
rs886055816 2397 dbSNP
rs1346602278 2400 dbSNP
rs1223259232 2418 dbSNP
rs556923467 2422 dbSNP
rs1281974941 2433 dbSNP
rs1331884195 2441 dbSNP
rs1240330490 2442 dbSNP
rs1259646979 2446 dbSNP
rs995119468 2451 dbSNP
rs756778773 2455 dbSNP
rs1211340136 2470 dbSNP
rs1036716887 2472 dbSNP
rs1467302756 2475 dbSNP
rs753447621 2477 dbSNP
rs541851059 2489 dbSNP
rs78395168 2495 dbSNP
rs1174867591 2504 dbSNP
rs1413837530 2508 dbSNP
rs74540213 2511 dbSNP
rs1056636200 2512 dbSNP
rs112761679 2514 dbSNP
rs964927835 2523 dbSNP
rs764304148 2527 dbSNP
rs1165269960 2532 dbSNP
rs1018067242 2541 dbSNP
rs534996321 2547 dbSNP
rs926855426 2548 dbSNP
rs1352640499 2559 dbSNP
rs570909315 2568 dbSNP
rs979710703 2570 dbSNP
rs887767906 2577 dbSNP
rs1259450473 2580 dbSNP
rs537124993 2590 dbSNP
rs1246330280 2597 dbSNP
rs1291810363 2598 dbSNP
rs58261980 2602 dbSNP
rs547971310 2603 dbSNP
rs896432738 2604 dbSNP
rs529989286 2606 dbSNP
rs937818908 2607 dbSNP
rs1203197540 2616 dbSNP
rs1248287202 2623 dbSNP
rs186156782 2635 dbSNP
rs905025942 2638 dbSNP
rs1043831072 2643 dbSNP
rs183332592 2644 dbSNP
rs548203428 2645 dbSNP
rs1008052179 2646 dbSNP
rs953906857 2648 dbSNP
rs886055815 2649 dbSNP
rs1398266932 2653 dbSNP
rs923504400 2654 dbSNP
rs976308825 2655 dbSNP
rs1243392627 2658 dbSNP
rs559550890 2659 dbSNP
rs898137862 2661 dbSNP
rs547084457 2663 dbSNP
rs1036707853 2664 dbSNP
rs1401928413 2671 dbSNP
rs1484211921 2676 dbSNP
rs114807372 2685 dbSNP
rs896232541 2688 dbSNP
rs1465085702 2691 dbSNP
rs1444069285 2701 dbSNP
rs1182047074 2714 dbSNP
rs952187170 2720 dbSNP
rs1429293746 2722 dbSNP
rs1371291642 2727 dbSNP
rs746182318 2737 dbSNP
rs993466911 2738 dbSNP
rs1468043424 2740 dbSNP
rs938148732 2745 dbSNP
rs1337949377 2750 dbSNP
rs1424184690 2752 dbSNP
rs1404807701 2760 dbSNP
rs926802916 2763 dbSNP
rs1449794689 2767 dbSNP
rs547662754 2768 dbSNP
rs1362252407 2770 dbSNP
rs960714626 2779 dbSNP
rs1034894931 2786 dbSNP
rs1293180864 2791 dbSNP
rs1002132953 2795 dbSNP
rs530233436 2797 dbSNP
rs781625918 2800 dbSNP
rs1262425064 2808 dbSNP
rs1460956313 2809 dbSNP
rs1043603797 2819 dbSNP
rs1243881880 2824 dbSNP
rs1460149688 2829 dbSNP
rs1186092664 2830 dbSNP
rs532456176 2838 dbSNP
rs1177838888 2839 dbSNP
rs1429172780 2840 dbSNP
rs1199370075 2865 dbSNP
rs867707412 2866 dbSNP
rs946967597 2867 dbSNP
rs892188292 2876 dbSNP
rs1286739236 2890 dbSNP
rs6724163 2890 dbSNP
rs752124492 2900 dbSNP
rs1223859346 2908 dbSNP
rs1282349290 2909 dbSNP
rs1321369187 2913 dbSNP
rs933621107 2919 dbSNP
rs988164026 2922 dbSNP
rs1286450306 2929 dbSNP
rs1317579602 2930 dbSNP
rs922280043 2936 dbSNP
rs557316507 2944 dbSNP
rs966482464 2948 dbSNP
rs911967235 2949 dbSNP
rs190725249 2950 dbSNP
rs1200628527 2952 dbSNP
rs543634482 2960 dbSNP
rs1268575090 2980 dbSNP
rs530890398 2985 dbSNP
rs953854862 2986 dbSNP
rs563489107 2989 dbSNP
rs1399609271 2990 dbSNP
rs1156539858 2996 dbSNP
rs886055814 2997 dbSNP
rs1367023549 2999 dbSNP
rs1405140361 3006 dbSNP
rs1302317491 3008 dbSNP
rs985004649 3012 dbSNP
rs1411651862 3013 dbSNP
rs995348687 3023 dbSNP
rs1314788805 3024 dbSNP
rs962604340 3027 dbSNP
rs1015965099 3028 dbSNP
rs1282182816 3040 dbSNP
rs1331550693 3044 dbSNP
rs1003876097 3052 dbSNP
rs960660588 3057 dbSNP
rs1291520746 3060 dbSNP
rs1489957277 3060 dbSNP
rs564992184 3067 dbSNP
rs1233929745 3069 dbSNP
rs7588974 3075 dbSNP
rs1175009009 3087 dbSNP
rs754527785 3089 dbSNP
rs576198967 3095 dbSNP
rs905334704 3097 dbSNP
rs886055813 3098 dbSNP
rs946913739 3099 dbSNP
rs1162525852 3101 dbSNP
rs1363558503 3107 dbSNP
rs1022648227 3110 dbSNP
rs1329516946 3112 dbSNP
rs765908131 3112 dbSNP
rs886055812 3113 dbSNP
rs1053143966 3118 dbSNP
rs892305761 3123 dbSNP
rs1385007899 3125 dbSNP
rs944704086 3131 dbSNP
rs866306192 3137 dbSNP
rs144864637 3141 dbSNP
rs1314622727 3142 dbSNP
rs1357789210 3143 dbSNP
rs997925062 3144 dbSNP
rs1437324383 3145 dbSNP
rs1248491558 3149 dbSNP
rs1202970892 3156 dbSNP
rs1244509924 3158 dbSNP
rs772824070 3161 dbSNP
rs1212220513 3162 dbSNP
rs986201326 3168 dbSNP
rs1382983530 3169 dbSNP
rs900844343 3169 dbSNP
rs1168313547 3171 dbSNP
rs1395421938 3172 dbSNP
rs1039396507 3180 dbSNP
rs932075521 3189 dbSNP
rs921057223 3190 dbSNP
rs35091730 3202 dbSNP
rs973873355 3203 dbSNP
rs34277046 3204 dbSNP
rs886055811 3205 dbSNP
rs1338945161 3206 dbSNP
rs575041280 3212 dbSNP
rs1271157108 3213 dbSNP
rs761840542 3215 dbSNP
rs79933587 3216 dbSNP
rs1265510091 3217 dbSNP
rs983130324 3223 dbSNP
rs919432549 3229 dbSNP
rs972132672 3232 dbSNP
rs1193381794 3235 dbSNP
rs1237814534 3237 dbSNP
rs1253485692 3243 dbSNP
rs1474300710 3245 dbSNP
rs1178545116 3255 dbSNP
rs1429878215 3261 dbSNP
rs1333542767 3262 dbSNP
rs1469181257 3263 dbSNP
rs960817718 3266 dbSNP
rs1400090508 3270 dbSNP
rs1302764042 3285 dbSNP
rs1384197008 3289 dbSNP
rs1326254692 3298 dbSNP
rs553032509 3299 dbSNP
rs1285532681 3302 dbSNP
rs1324920688 3321 dbSNP
rs980769093 3324 dbSNP
rs1253753861 3330 dbSNP
rs1389948361 3331 dbSNP
rs558870774 3338 dbSNP
rs1301171102 3339 dbSNP
rs1260566411 3340 dbSNP
rs1421289815 3346 dbSNP
rs537694779 3347 dbSNP
rs569757648 3348 dbSNP
rs77216981 3349 dbSNP
rs141163533 3351 dbSNP
rs1376063140 3357 dbSNP
rs1022094622 3362 dbSNP
rs1455385958 3367 dbSNP
rs1159416442 3369 dbSNP
rs1011073077 3375 dbSNP
rs989813941 3387 dbSNP
rs1362175600 3398 dbSNP
rs886055810 3408 dbSNP
rs146483651 3409 dbSNP
rs1305346126 3413 dbSNP
rs1346480649 3418 dbSNP
rs371234933 3422 dbSNP
rs1030831731 3424 dbSNP
rs997874051 3426 dbSNP
rs1239108231 3431 dbSNP
rs1052676619 3440 dbSNP
rs1433797936 3441 dbSNP
rs900960337 3443 dbSNP
rs944963756 3449 dbSNP
rs7573892 3450 dbSNP
rs1220819323 3454 dbSNP
rs577196714 3471 dbSNP
rs1006533419 3473 dbSNP
rs1287180597 3480 dbSNP
rs1419552642 3482 dbSNP
rs558513098 3484 dbSNP
rs1204254463 3485 dbSNP
rs888113143 3486 dbSNP
rs1418115077 3487 dbSNP
rs1050388868 3495 dbSNP
rs1165689207 3498 dbSNP
rs1366653682 3507 dbSNP
rs1049279915 3513 dbSNP
rs932022934 3514 dbSNP
rs1399283022 3527 dbSNP
rs1201970164 3531 dbSNP
rs1305677357 3537 dbSNP
rs920670677 3541 dbSNP
rs114944621 3544 dbSNP
rs941186365 3545 dbSNP
rs571547896 3551 dbSNP
rs908390248 3552 dbSNP
rs1315278693 3555 dbSNP
rs149933652 3557 dbSNP
rs1344248933 3559 dbSNP
rs1219137850 3564 dbSNP
rs1252812513 3587 dbSNP
rs960917822 3592 dbSNP
rs939401952 3596 dbSNP
rs1237708125 3599 dbSNP
rs1437899436 3610 dbSNP
rs928049208 3615 dbSNP
rs1386069425 3620 dbSNP
rs1444181216 3622 dbSNP
rs1034654789 3627 dbSNP
rs1163153725 3635 dbSNP
rs769843920 3636 dbSNP
rs1356570997 3646 dbSNP
rs1462953134 3655 dbSNP
rs1298103182 3657 dbSNP
rs980432718 3658 dbSNP
rs1401749069 3660 dbSNP
rs1454101680 3661 dbSNP
rs1340967896 3667 dbSNP
rs769897331 3671 dbSNP
rs139727121 3672 dbSNP
rs1383102400 3682 dbSNP
rs1174496091 3683 dbSNP
rs1307847484 3689 dbSNP
rs1466622883 3711 dbSNP
rs762159888 3722 dbSNP
rs1256042908 3726 dbSNP
rs915264110 3732 dbSNP
rs1428613223 3734 dbSNP
rs746117958 3743 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084044. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep3 HITS-CLIP data was present in GSM1084045. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep3 HITS-CLIP data was present in GSM1084046. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep4 HITS-CLIP data was present in GSM1084047. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep4 HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb HITS-CLIP data was present in GSM1084066. RNA binding protein: AGO2. Condition:CLIP_noemetine_SantaCruzAb HITS-CLIP data was present in GSM1084067. RNA binding protein: AGO2. Condition:CLIP_emetine_SantaCruzAb HITS-CLIP data was present in GSM1084068. RNA binding protein: AGO2. Condition:CLIP_noemetine_SigmaAb HITS-CLIP data was present in GSM1084069. RNA binding protein: AGO2. Condition:CLIP_emetine_SigmaAb HITS-CLIP data was present in GSM1084072. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep1_AbnovaAb HITS-CLIP data was present in GSM1084073. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep1_AbnovaAb HITS-CLIP data was present in GSM1084074. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep1_SantaCruzAb HITS-CLIP data was present in GSM1084075. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep1_SantaCruzAb HITS-CLIP data was present in GSM1084076. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep1_SigmaAb HITS-CLIP data was present in GSM1084077. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep1_SigmaAb HITS-CLIP data was present in GSM1084078. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_AbnovaAb HITS-CLIP data was present in GSM1084079. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_AbnovaAb HITS-CLIP data was present in GSM1084080. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_SantaCruzAb HITS-CLIP data was present in GSM1084081. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_SantaCruzAb HITS-CLIP data was present in GSM1084082. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_SigmaAb HITS-CLIP data was present in GSM1084083. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_SigmaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Liver Tissue
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM2550605. RNA binding protein: AGO2. Condition:Patient 1 Normal 2 HITS-CLIP data was present in GSM2550607. RNA binding protein: AGO2. Condition:Patient 2 Normal 2 HITS-CLIP data was present in GSM2550611. RNA binding protein: AGO2. Condition:Patient 4 Normal 2 HITS-CLIP data was present in GSM2550613. RNA binding protein: AGO2. Condition:Patient 5 Normal 2 HITS-CLIP data was present in GSM2550619. RNA binding protein: AGO2. Condition:Patient 1 Tumor 2 HITS-CLIP data was present in GSM2550625. RNA binding protein: AGO2. Condition:Patient 4 Tumor 2 HITS-CLIP data was present in GSM2550627. RNA binding protein: AGO2. Condition:Patient 5 Tumor 2 HITS-CLIP data was present in GSM2550615. RNA binding protein: AGO2. Condition:Patient 7 Normal 1 HITS-CLIP data was present in GSM2550623. RNA binding protein: AGO2. Condition:Patient 3 Tumor 2 HITS-CLIP data was present in GSM2550609. RNA binding protein: AGO2. Condition:Patient 3 Normal 2 ...

- Luna JM; Barajas JM; Teng KY; Sun HL; Moore et al., 2017, Molecular cell.

Article - Luna JM; Barajas JM; Teng KY; Sun HL; Moore et al.
- Molecular cell, 2017
MicroRNA-122, an abundant and conserved liver-specific miRNA, regulates hepatic metabolism and functions as a tumor suppressor, yet systematic and direct biochemical elucidation of the miR-122 target network remains incomplete. To this end, we performed Argonaute crosslinking immunoprecipitation (Argonaute [Ago]-CLIP) sequencing in miR-122 knockout and control mouse livers, as well as in matched human hepatocellular carcinoma (HCC) and benign liver tissue to identify miRNA target sites transcriptome-wide in two species. We observed a majority of miR-122 binding on 3' UTRs and coding exons followed by extensive binding to other genic and non-genic sites. Motif analysis of miR-122-dependent binding revealed a G-bulged motif in addition to canonical motifs. A large number of miR-122 targets were found to be species specific. Upregulation of several common mouse and human targets, most notably BCL9, predicted survival in HCC patients. These results broadly define the molecular consequences of miR-122 downregulation in hepatocellular carcinoma.
LinkOut: [PMID: 28735896]
CLIP-seq Support 1 for dataset GSM1084044
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep3
Location of target site ENST00000252711.2 | 3UTR | GUGCAGAGGACGAUGCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084045
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep3
Location of target site ENST00000252711.2 | 3UTR | GUGCAGAGGACGAUGCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084046
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep4
Location of target site ENST00000252711.2 | 3UTR | GUGCAGAGGACGAUGCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1084047
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep4
Location of target site ENST00000252711.2 | 3UTR | GUGCAGAGGACGAUGCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000252711.2 | 3UTR | GUGCAGAGGACGAUGCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000252711.2 | 3UTR | GUGCAGAGGACGAUGCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM1084066
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_SantaCruzAb
Location of target site ENST00000252711.2 | 3UTR | GGUGCAGAGGACGAUGCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM1084067
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_SantaCruzAb
Location of target site ENST00000252711.2 | 3UTR | GUGCAGAGGACGAUGCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 9 for dataset GSM1084068
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_SigmaAb
Location of target site ENST00000252711.2 | 3UTR | GUGCAGAGGACGAUGCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 10 for dataset GSM1084069
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_SigmaAb
Location of target site ENST00000252711.2 | 3UTR | GGUGCAGAGGACGAUGCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 11 for dataset GSM1084072
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep1_AbnovaAb
Location of target site ENST00000252711.2 | 3UTR | GUGCAGAGGACGAUGCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 12 for dataset GSM1084073
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep1_AbnovaAb
Location of target site ENST00000252711.2 | 3UTR | GUGCAGAGGACGAUGCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 13 for dataset GSM1084074
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep1_SantaCruzAb
Location of target site ENST00000252711.2 | 3UTR | GUGCAGAGGACGAUGCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 14 for dataset GSM1084075
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep1_SantaCruzAb
Location of target site ENST00000252711.2 | 3UTR | GUGCAGAGGACGAUGCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 15 for dataset GSM1084076
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep1_SigmaAb
Location of target site ENST00000252711.2 | 3UTR | UGGUGCAGAGGACGAUGCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 16 for dataset GSM1084077
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep1_SigmaAb
Location of target site ENST00000252711.2 | 3UTR | UGGUGCAGAGGACGAUGCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 17 for dataset GSM1084078
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep2_AbnovaAb
Location of target site ENST00000252711.2 | 3UTR | GUGCAGAGGACGAUGCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 18 for dataset GSM1084079
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_AbnovaAb
Location of target site ENST00000252711.2 | 3UTR | UGGUGCAGAGGACGAUGCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 19 for dataset GSM1084081
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_SantaCruzAb
Location of target site ENST00000252711.2 | 3UTR | GUGCAGAGGACGAUGCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 20 for dataset GSM1084082
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep2_SigmaAb
Location of target site ENST00000252711.2 | 3UTR | GUGCAGAGGACGAUGCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 21 for dataset GSM1084083
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_SigmaAb
Location of target site ENST00000252711.2 | 3UTR | UGGUGCAGAGGACGAUGCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
296 hsa-miR-4793-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092332 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT131237 ATG2A autophagy related 2A 2 2
MIRT145926 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT206559 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT226455 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT337662 ZNF695 zinc finger protein 695 2 2
MIRT405828 SIX4 SIX homeobox 4 2 2
MIRT455113 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT456756 TMEM239 transmembrane protein 239 2 4
MIRT457974 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT458173 LYRM4 LYR motif containing 4 2 4
MIRT458245 SLC9A7 solute carrier family 9 member A7 2 2
MIRT466145 TMEM120B transmembrane protein 120B 2 2
MIRT474981 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT475601 HMGB2 high mobility group box 2 2 4
MIRT480759 BMP3 bone morphogenetic protein 3 2 4
MIRT481156 AVL9 AVL9 cell migration associated 2 2
MIRT482155 AK2 adenylate kinase 2 2 2
MIRT488386 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT496575 KIF18B kinesin family member 18B 2 2
MIRT498411 TXNDC16 thioredoxin domain containing 16 2 4
MIRT504547 ZNF417 zinc finger protein 417 2 6
MIRT505417 TCF7L2 transcription factor 7 like 2 2 2
MIRT509349 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 6
MIRT512164 CD164 CD164 molecule 2 6
MIRT517238 PRIM1 DNA primase subunit 1 2 2
MIRT518671 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT519298 MLH1 mutL homolog 1 2 2
MIRT523662 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT525452 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539847 ZNF766 zinc finger protein 766 2 2
MIRT540076 SSH3 slingshot protein phosphatase 3 2 2
MIRT540320 PIGR polymeric immunoglobulin receptor 2 2
MIRT540548 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT540759 UTP6 UTP6, small subunit processome component 2 2
MIRT541545 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT541553 SLC35E1 solute carrier family 35 member E1 2 2
MIRT541666 ATP8B3 ATPase phospholipid transporting 8B3 2 4
MIRT541722 TFDP2 transcription factor Dp-2 2 2
MIRT541800 DUSP28 dual specificity phosphatase 28 2 2
MIRT541816 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT541907 VWA7 von Willebrand factor A domain containing 7 2 2
MIRT542154 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT542207 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542233 FUT9 fucosyltransferase 9 2 2
MIRT542320 SERPING1 serpin family G member 1 2 2
MIRT542369 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542476 APOC3 apolipoprotein C3 2 2
MIRT542641 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542660 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT542749 PRRG4 proline rich and Gla domain 4 2 4
MIRT542789 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT545442 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT546206 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT552270 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552655 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT554134 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT556795 KIAA1958 KIAA1958 2 2
MIRT564762 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT569428 STX7 syntaxin 7 2 2
MIRT573245 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT607390 LANCL3 LanC like 3 2 2
MIRT607430 NOTCH2NL notch 2 N-terminal like 2 2
MIRT607452 ZNF543 zinc finger protein 543 2 2
MIRT607580 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT607748 ANGPT4 angiopoietin 4 2 2
MIRT607907 SPRYD4 SPRY domain containing 4 2 2
MIRT608703 GMPR guanosine monophosphate reductase 2 2
MIRT612127 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 2 2
MIRT612786 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT616692 LPL lipoprotein lipase 2 2
MIRT617045 ZNF610 zinc finger protein 610 2 2
MIRT617091 ZNF43 zinc finger protein 43 2 2
MIRT617314 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT617355 MELK maternal embryonic leucine zipper kinase 2 2
MIRT617486 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT617579 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT617669 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT617722 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617893 PTCHD3 patched domain containing 3 2 2
MIRT617982 ZNF234 zinc finger protein 234 2 4
MIRT618434 MYLK3 myosin light chain kinase 3 2 4
MIRT618732 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT619045 CASS4 Cas scaffolding protein family member 4 2 2
MIRT619573 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT619671 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT619887 ABHD17B abhydrolase domain containing 17B 2 2
MIRT620519 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT620535 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT620996 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT621304 YIPF4 Yip1 domain family member 4 2 2
MIRT622086 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622168 SMYD1 SET and MYND domain containing 1 2 2
MIRT622543 PXMP4 peroxisomal membrane protein 4 2 2
MIRT622761 PGM3 phosphoglucomutase 3 2 2
MIRT622885 PDCL3 phosducin like 3 2 4
MIRT623130 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 2 2
MIRT624840 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT625047 MBD3 methyl-CpG binding domain protein 3 2 2
MIRT625059 ZNF556 zinc finger protein 556 2 2
MIRT625508 PPAPDC1A phospholipid phosphatase 4 2 2
MIRT625573 ANKRD42 ankyrin repeat domain 42 2 2
MIRT626133 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT626327 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626765 CDC14B cell division cycle 14B 2 2
MIRT626798 CSE1L chromosome segregation 1 like 2 2
MIRT627212 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT627225 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT627256 XKR4 XK related 4 2 2
MIRT628190 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT628466 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT628627 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT629040 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT630847 ACACB acetyl-CoA carboxylase beta 2 2
MIRT631721 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT632264 USP1 ubiquitin specific peptidase 1 2 4
MIRT632571 POLQ DNA polymerase theta 2 2
MIRT633992 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635211 ZNF286A zinc finger protein 286A 2 4
MIRT635249 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635261 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT635283 GK5 glycerol kinase 5 (putative) 2 2
MIRT635663 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT636251 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT636564 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT636814 TBC1D24 TBC1 domain family member 24 2 2
MIRT637358 ZNF460 zinc finger protein 460 2 2
MIRT637473 DEFB105B defensin beta 105B 2 4
MIRT637505 DEFB105A defensin beta 105A 2 4
MIRT637861 SC5D sterol-C5-desaturase 2 2
MIRT638080 ZNF652 zinc finger protein 652 2 2
MIRT638096 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT638174 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT638201 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT638278 SH2B3 SH2B adaptor protein 3 2 2
MIRT638714 FUT11 fucosyltransferase 11 2 2
MIRT638852 CLMP CXADR like membrane protein 2 2
MIRT639815 TMED8 transmembrane p24 trafficking protein family member 8 2 2
MIRT640879 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT640937 FAM129A family with sequence similarity 129 member A 2 2
MIRT640971 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT641642 GNAZ G protein subunit alpha z 2 2
MIRT641931 SLC25A16 solute carrier family 25 member 16 2 2
MIRT642136 CRY2 cryptochrome circadian clock 2 2 2
MIRT643199 JAK3 Janus kinase 3 2 2
MIRT643256 ZNF566 zinc finger protein 566 2 2
MIRT643378 TRIM16L tripartite motif containing 16 like 2 2
MIRT643683 AMER3 APC membrane recruitment protein 3 2 2
MIRT643728 MCMDC2 minichromosome maintenance domain containing 2 2 2
MIRT643949 CCDC141 coiled-coil domain containing 141 2 2
MIRT644915 SERF1B small EDRK-rich factor 1B 2 2
MIRT645163 NOL9 nucleolar protein 9 2 2
MIRT645547 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT645550 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT645572 TACR2 tachykinin receptor 2 2 2
MIRT646697 SERF1A small EDRK-rich factor 1A 2 2
MIRT647806 FRMD8 FERM domain containing 8 2 2
MIRT647903 CIRH1A UTP4, small subunit processome component 2 2
MIRT648978 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT649907 SLFN12L schlafen family member 12 like 2 2
MIRT650224 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT651880 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT651935 UBN1 ubinuclein 1 2 2
MIRT652839 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT652994 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT654800 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655591 OTUD7B OTU deubiquitinase 7B 2 2
MIRT658760 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT659358 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT660717 AMER1 APC membrane recruitment protein 1 2 2
MIRT660737 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT661088 TMEM145 transmembrane protein 145 2 2
MIRT661176 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT662005 ZNF445 zinc finger protein 445 2 2
MIRT662178 KIAA1210 KIAA1210 2 2
MIRT662270 OR51E2 olfactory receptor family 51 subfamily E member 2 2 2
MIRT663046 SLC16A4 solute carrier family 16 member 4 2 2
MIRT663476 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT664039 RPL27A ribosomal protein L27a 2 2
MIRT664096 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT664109 FUT1 fucosyltransferase 1 (H blood group) 2 2
MIRT664317 CD209 CD209 molecule 2 2
MIRT664455 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT664595 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 4
MIRT664694 DBF4 DBF4 zinc finger 2 2
MIRT665162 SF3A1 splicing factor 3a subunit 1 2 2
MIRT665214 RBM22 RNA binding motif protein 22 2 2
MIRT665254 ZNF286B zinc finger protein 286B 2 2
MIRT665268 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT665606 TTC39A tetratricopeptide repeat domain 39A 2 2
MIRT665830 TIMELESS timeless circadian clock 2 2
MIRT666201 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT666546 RNF115 ring finger protein 115 2 2
MIRT666602 REEP3 receptor accessory protein 3 2 2
MIRT666862 POU2F3 POU class 2 homeobox 3 2 4
MIRT666886 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT667158 NRXN3 neurexin 3 2 2
MIRT667252 NEK9 NIMA related kinase 9 2 2
MIRT667419 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT667434 METTL8 methyltransferase like 8 2 2
MIRT668023 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT668062 GPR75 G protein-coupled receptor 75 2 2
MIRT668070 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT668607 EHD4 EH domain containing 4 2 4
MIRT668694 DNAL1 dynein axonemal light chain 1 2 2
MIRT668782 DAAM1 dishevelled associated activator of morphogenesis 1 2 2
MIRT669037 CHEK1 checkpoint kinase 1 2 2
MIRT669044 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT669156 CCNG1 cyclin G1 2 2
MIRT670090 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT670206 SLC24A4 solute carrier family 24 member 4 2 2
MIRT672488 FUS FUS RNA binding protein 2 2
MIRT673830 SLC11A2 solute carrier family 11 member 2 2 2
MIRT675481 VEGFC vascular endothelial growth factor C 2 2
MIRT675634 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT677913 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678420 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678626 OLFML2A olfactomedin like 2A 2 2
MIRT678791 NUPL2 nucleoporin like 2 2 2
MIRT679561 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT680743 CA5B carbonic anhydrase 5B 2 2
MIRT682481 LIX1L limb and CNS expressed 1 like 2 4
MIRT682701 PSMD9 proteasome 26S subunit, non-ATPase 9 2 2
MIRT682759 MDM2 MDM2 proto-oncogene 2 2
MIRT682811 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682847 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT682896 XIAP X-linked inhibitor of apoptosis 2 2
MIRT682916 FAM73A mitoguardin 1 2 2
MIRT682935 ZNF292 zinc finger protein 292 2 2
MIRT682953 RPL12 ribosomal protein L12 2 2
MIRT682972 NF2 neurofibromin 2 2 2
MIRT683033 SUSD5 sushi domain containing 5 2 2
MIRT683081 A1BG alpha-1-B glycoprotein 2 2
MIRT683105 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT686640 TMEM184C transmembrane protein 184C 2 2
MIRT687444 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688401 EMC8 ER membrane protein complex subunit 8 2 2
MIRT688886 C3orf70 chromosome 3 open reading frame 70 2 2
MIRT689148 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 2 2
MIRT689234 RPS19 ribosomal protein S19 2 2
MIRT689306 C5AR2 complement component 5a receptor 2 2 2
MIRT689364 ZNF101 zinc finger protein 101 2 2
MIRT689498 SCARF1 scavenger receptor class F member 1 2 2
MIRT689655 RBM23 RNA binding motif protein 23 2 2
MIRT689897 SOD2 superoxide dismutase 2 2 2
MIRT690150 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT690601 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690805 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT690946 GLG1 golgi glycoprotein 1 2 2
MIRT691388 ATP13A4 ATPase 13A4 2 2
MIRT691408 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT692175 LRRC3C leucine rich repeat containing 3C 2 2
MIRT692235 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693283 GINM1 glycoprotein integral membrane 1 2 2
MIRT693439 TPGS1 tubulin polyglutamylase complex subunit 1 2 2
MIRT693460 HIST1H2AG histone cluster 1 H2A family member g 2 2
MIRT693768 ZNF383 zinc finger protein 383 2 2
MIRT694018 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694236 ZNF749 zinc finger protein 749 2 2
MIRT694321 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694347 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT694430 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT695763 WDR35 WD repeat domain 35 2 2
MIRT696167 TIPIN TIMELESS interacting protein 2 2
MIRT696417 DOCK7 dedicator of cytokinesis 7 2 2
MIRT696543 C3 complement C3 2 2
MIRT696998 CCDC80 coiled-coil domain containing 80 2 2
MIRT697232 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697806 UBXN2A UBX domain protein 2A 2 2
MIRT697944 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT698161 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT698778 STK4 serine/threonine kinase 4 2 2
MIRT700259 RBM12B RNA binding motif protein 12B 2 2
MIRT700970 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT701251 NUP35 nucleoporin 35 2 2
MIRT701607 MYPN myopalladin 2 2
MIRT702457 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702613 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT702691 IRGQ immunity related GTPase Q 2 2
MIRT702934 HMX3 H6 family homeobox 3 2 2
MIRT702991 HERPUD2 HERPUD family member 2 2 2
MIRT703148 GPR137C G protein-coupled receptor 137C 2 2
MIRT703980 EMC1 ER membrane protein complex subunit 1 2 2
MIRT704569 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT705065 C4orf32 family with sequence similarity 241 member A 2 2
MIRT705447 ATL2 atlastin GTPase 2 2 2
MIRT705856 AFF3 AF4/FMR2 family member 3 2 2
MIRT705886 ADIPOR2 adiponectin receptor 2 2 2
MIRT714370 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT715784 PHF12 PHD finger protein 12 2 2
MIRT715864 KIAA0101 PCNA clamp associated factor 2 2
MIRT715947 NUP93 nucleoporin 93 2 2
MIRT716132 THOC5 THO complex 5 2 2
MIRT717084 EBF4 early B-cell factor 4 2 2
MIRT725424 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT736091 GREM1 gremlin 1, DAN family BMP antagonist 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4793 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4793-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4793-3p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4793-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

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