pre-miRNA Information
pre-miRNA hsa-mir-4708   
Genomic Coordinates chr14: 65335117 - 65335183
Description Homo sapiens miR-4708 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4708-5p
Sequence 9| AGAGAUGCCGCCUUGCUCCUU |29
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1017378847 9 dbSNP
rs750825813 10 dbSNP
rs1297395738 19 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol GALNT6   
Synonyms GALNAC-T6, GalNAcT6
Description polypeptide N-acetylgalactosaminyltransferase 6
Transcript NM_007210   
Expression
Putative miRNA Targets on GALNT6
3'UTR of GALNT6
(miRNA target sites are highlighted)
>GALNT6|NM_007210|3'UTR
   1 GACCCAGATCATCCCCAGAGAGAGCCCCCACAAGCTCCTCAGGAAACAGGATTGCTGATGTCTGGGAACCTGATCACCAG
  81 CTTCTCTGGAGGCCGTAAAGATGGATTTCTAAACCCACTGGGTGGCAAGGCAGGACCTTCCTAATCCTTGCAACAACATT
 161 GGGCCCATTTTCTTTCCTTCACACCGATGGAAGAGACCATTAGGACATATATTTAGCCTAGCGTTTTCCTGTTCTAGAAA
 241 TAGAGGCTCCCAAAGTAGGGAAGGCAGCTGGGGGAGGGTTCAGGGCAGCAATGCTGAGTTCAAGAAAAGTACTTCAGGCT
 321 GGGCACAGTGGCTCATGCCTGAAATCCTAGCACTTTGGGAAGACAATGTGGGAGAATGGCTTGAGCCCAGGAGTTCAAGA
 401 CCGGCCTGAGCAACATAGTGAGGATCCCATCTCTACGCCCACCCTCCCCCCGGCAAAAAAAAAAAGCTGGGTATGGTGGC
 481 TTATGCCTGTAGTCGCAGCTACTCAGAAGGCTGAGGTGGGAGGATTGCTTGTTCCCCGGAGGTTGAAGCTACAGTGAGCC
 561 TTGATTGTGTCACTGCACTCCAGCCTGGGCAACAGGTAAGACTCTGTCTCAAAAAAAAACAAAAAAGAAGAAGAAAAGTA
 641 CTTCTACAGCCATGTCCTATTCCTTGATCATCCAAAGCACCTGCAGAGTCCAGTGAAATGATATATTCTGGCTGGGCACA
 721 GTGGCTCACACCTGTAATCCTAGCACTTTGGGAGGCCAAGGCAGGTGGATCACCTGAGGTCAGAAGTTTGAAACCAGCCT
 801 GGACTACATGGTGAAACTCCATCTCTACTAAAAGTACAAAAATTAGCTGGGCATGATGGCACGCACCTGCAGTCCCAGCT
 881 ACTTGGGAGGCTGAGGCAGGAGAATCACTCGAACCCAGGAGGCAGAGGTTGCAGTGAGCCAAGACAGCACCATTGCACCC
 961 CAGCCTGAGCAACAAGAGCGAAACTCCATCTCAGGAAAAAAAAAAAAAAAAAAAGTATATTCTAACAGACAGATCAGAGG
1041 TCTAAGAGATCCTCCCTTGCTATTATTACCTGAAGTCTGTAGAACTGTTTACAGATATCTCCTTGACAGGTGTCCTTTAT
1121 CTTACTTTATCTGTACAGTAATCCTGTGAGAAAGACAGGACAGAAACCACTGTGCCTATTTTACAGATACGAAAACTGAG
1201 ACACAGGTAAAGGGGCTTGTCTGTAGTCCCATAGCTAGCAGATGGCTGGAGCCAAGACTGAGGCTCGTTCTTCAATGCTG
1281 AGCCAGGGCTCCTTCCGCTGCACCACAAGAACGCTAGACCACTCGCCACCAGCCTTCTCATTCCCTCTTCCTCCATTCTA
1361 ATCATTTCTAGCTGGCTGGCCTCCACAGAGCATAGGAAAACAGCCAGGGCCGGGCACGGTGGCTCATGCCTGTAATCTCA
1441 ACACTCTGGGAGGCCGAGCCGGGTGGATAACCTGAGGTCAGGAATTCGAGACCAGCCTGGCCAACATGGTAAAACCCCAT
1521 CTCTACTAAAAATATAAAAATTAGCCAGGCATGGTGGCGCACACCTGTAATCCCAGCTACTCAAGAGGCTGAGGCAGGAG
1601 AATTGCTTAAATCTGGGAGGCGGAAGTTGCAGTGAGCCAAGATCGCGCCACTGAACTCCAGCCTAGGCAACAAGAGCAAA
1681 ACTCCATCTCCAAAAAAAAGAAAGGAAAAACAGGGCCAGGTAGCCATTGTGGAGAGAGCACACTTAGGAATCCTGGGATG
1761 TTAGTGTTAAAAGAAAGCTCCTGGAGCCAGTGATTCTCAGGTTTGTCCCAGAACCCTTTTTTCTAAGCCCCATATAAAAG
1841 GTAGATTAAAAAAACAAAGTAGCATGAGTGAAATTGAGAGAGGGACAGGTAATGCCTTCCAGCCCCTAACTTCTAACAAT
1921 CTGGAAGCACAACGTGAAAATCACGTAGCCCAACCCTATCATTTTCATATTATGAAACTGAGTCCAGGTAAGTGAATCTG
2001 TCCAAGGTCACCCAGCAAGGTATCAGTAGCCCTGAGGGTAAGGACTCTGATAAGGCTCGGGAGGGTCCTGGAAAGCCTGA
2081 GGCGGCAGGAAGAGTGTGCAGAGTTGAGCGTGTCTGGAAGGCTGATCCACTGCTGGGCCCACATCAAAGCCCCCATGGGG
2161 AGCAGACCCGACTGCACATGGCTCTTTTGCTGGAAGAAGAGCATGGCTGCGCAGAGGACTAAAATTTCATCTGGGAAGGC
2241 TTCTTTTGACTGTCAGTAGCAGGATGTCACCAGATGAGGGTGCTATGGGACCACAGCTGTCTTTGTTCCCATTGCAACTC
2321 AACCCTGCGG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uucCUCGUUCCGCCGUAGAGa 5'
             ||||||  |  |||||| 
Target 5' caaGAGCAAAACTCCATCTCc 3'
1671 - 1691 134.00 -13.40
2
miRNA  3' uucCUCGUUCCGCCGUAGAGa 5'
             ||||:|  |  |||||| 
Target 5' caaGAGCGAAACTCCATCTCa 3'
973 - 993 130.00 -13.00
3
miRNA  3' uuccUCGUUCC-GCCGUAGAGa 5'
              ||::||| :  |||||| 
Target 5' acatAGTGAGGATCCCATCTCt 3'
413 - 434 125.00 -14.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30483359 7 COSMIC
COSN30133392 12 COSMIC
COSN18737250 14 COSMIC
COSN30479211 15 COSMIC
COSN30512079 30 COSMIC
COSN19530668 60 COSMIC
COSN30123102 94 COSMIC
COSN25831726 95 COSMIC
COSN31515231 107 COSMIC
COSN30134452 115 COSMIC
COSN17078507 197 COSMIC
COSN23925327 342 COSMIC
COSN17259704 440 COSMIC
COSN17753484 452 COSMIC
COSN22097667 1535 COSMIC
COSN26721905 1549 COSMIC
COSN15788714 1587 COSMIC
COSN9751304 1875 COSMIC
COSN23848130 1958 COSMIC
COSN5323838 2284 COSMIC
COSN1575925 2285 COSMIC
COSN20352959 2983 COSMIC
COSN29752667 3076 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1400364430 1 dbSNP
rs1401110219 3 dbSNP
rs199920813 15 dbSNP
rs752073843 20 dbSNP
rs554881528 24 dbSNP
rs1203447095 25 dbSNP
rs1251597348 26 dbSNP
rs200103893 29 dbSNP
rs1477744172 30 dbSNP
rs765447729 31 dbSNP
rs759793808 35 dbSNP
rs773008554 40 dbSNP
rs771792428 41 dbSNP
rs575399959 42 dbSNP
rs925162869 45 dbSNP
rs979498020 47 dbSNP
rs774318636 48 dbSNP
rs745735458 49 dbSNP
rs768603963 50 dbSNP
rs1218083780 51 dbSNP
rs1235725451 69 dbSNP
rs1428138343 76 dbSNP
rs1020962521 82 dbSNP
rs972635855 86 dbSNP
rs962670431 91 dbSNP
rs558426601 94 dbSNP
rs368190948 95 dbSNP
rs1007385917 98 dbSNP
rs1270334806 99 dbSNP
rs1343815338 100 dbSNP
rs889912601 101 dbSNP
rs1284006536 102 dbSNP
rs1273492645 104 dbSNP
rs1030169778 114 dbSNP
rs572786981 118 dbSNP
rs1265811667 120 dbSNP
rs952299023 128 dbSNP
rs1193991024 137 dbSNP
rs1392149341 138 dbSNP
rs757262040 142 dbSNP
rs891988851 144 dbSNP
rs752700083 156 dbSNP
rs936267947 158 dbSNP
rs572975781 159 dbSNP
rs1043433080 167 dbSNP
rs796365650 176 dbSNP
rs148556634 182 dbSNP
rs1295085067 184 dbSNP
rs896871893 185 dbSNP
rs916292484 186 dbSNP
rs1320612758 194 dbSNP
rs1366679801 199 dbSNP
rs1225582499 200 dbSNP
rs1007820225 201 dbSNP
rs890813580 202 dbSNP
rs1050088790 207 dbSNP
rs772848524 210 dbSNP
rs779091435 216 dbSNP
rs925099424 222 dbSNP
rs564505117 223 dbSNP
rs1250471728 229 dbSNP
rs141244547 231 dbSNP
rs918445329 236 dbSNP
rs972603461 241 dbSNP
rs1243916985 246 dbSNP
rs12582216 249 dbSNP
rs1166610443 259 dbSNP
rs1366548227 263 dbSNP
rs1457237071 266 dbSNP
rs551301216 270 dbSNP
rs1464593510 271 dbSNP
rs1253724537 276 dbSNP
rs1215589087 277 dbSNP
rs537298004 294 dbSNP
rs571817694 307 dbSNP
rs1432186411 317 dbSNP
rs1319368436 319 dbSNP
rs992263591 323 dbSNP
rs1289719497 327 dbSNP
rs960974966 332 dbSNP
rs1215652967 334 dbSNP
rs761926231 369 dbSNP
rs926674244 370 dbSNP
rs370223684 377 dbSNP
rs963351921 383 dbSNP
rs954190311 388 dbSNP
rs993591174 389 dbSNP
rs1208173925 390 dbSNP
rs962198017 391 dbSNP
rs1484345742 400 dbSNP
rs1029723889 401 dbSNP
rs1015272568 402 dbSNP
rs1326038198 403 dbSNP
rs1422954730 410 dbSNP
rs1182640702 427 dbSNP
rs1414071113 428 dbSNP
rs1455635729 431 dbSNP
rs1007954480 436 dbSNP
rs776934242 437 dbSNP
rs551968208 439 dbSNP
rs59519264 444 dbSNP
rs1000440828 448 dbSNP
rs904740847 451 dbSNP
rs1045045290 452 dbSNP
rs185802714 454 dbSNP
rs1302611601 455 dbSNP
rs376788011 455 dbSNP
rs1253790012 456 dbSNP
rs1255567618 462 dbSNP
rs1483535911 463 dbSNP
rs766719056 465 dbSNP
rs11350640 466 dbSNP
rs1181304996 466 dbSNP
rs1435428368 466 dbSNP
rs398019564 466 dbSNP
rs56958722 466 dbSNP
rs1425829177 470 dbSNP
rs1434335013 473 dbSNP
rs560317087 474 dbSNP
rs1056201658 494 dbSNP
rs1487578816 495 dbSNP
rs1358205118 505 dbSNP
rs1430086459 512 dbSNP
rs939125823 517 dbSNP
rs117469523 528 dbSNP
rs1036861775 534 dbSNP
rs939486439 537 dbSNP
rs529734114 538 dbSNP
rs1217532636 540 dbSNP
rs941207867 542 dbSNP
rs1343096680 543 dbSNP
rs146552793 543 dbSNP
rs544505398 555 dbSNP
rs193071930 556 dbSNP
rs1203570612 560 dbSNP
rs1341031547 571 dbSNP
rs1247154359 586 dbSNP
rs1489457194 604 dbSNP
rs557248043 606 dbSNP
rs1220588272 610 dbSNP
rs1364962709 611 dbSNP
rs1387942064 616 dbSNP
rs962165351 620 dbSNP
rs140039738 621 dbSNP
rs1442861773 624 dbSNP
rs1019100245 631 dbSNP
rs986945987 636 dbSNP
rs955189567 641 dbSNP
rs1292989717 642 dbSNP
rs1028491033 649 dbSNP
rs1377078858 652 dbSNP
rs996498481 656 dbSNP
rs1295596169 667 dbSNP
rs564759914 670 dbSNP
rs750864441 673 dbSNP
rs1213759359 685 dbSNP
rs954044014 686 dbSNP
rs903537236 693 dbSNP
rs1219220075 695 dbSNP
rs60044798 698 dbSNP
rs1464902663 703 dbSNP
rs1189956589 707 dbSNP
rs976815152 716 dbSNP
rs956142500 720 dbSNP
rs1031767745 729 dbSNP
rs1474914343 732 dbSNP
rs1164164526 738 dbSNP
rs572688843 743 dbSNP
rs1000324659 744 dbSNP
rs969308915 745 dbSNP
rs1416470747 760 dbSNP
rs1403978694 761 dbSNP
rs747047421 765 dbSNP
rs1164646790 767 dbSNP
rs892296995 781 dbSNP
rs1056352834 782 dbSNP
rs1318688493 787 dbSNP
rs939183653 797 dbSNP
rs553092806 806 dbSNP
rs1284548793 809 dbSNP
rs1226403665 817 dbSNP
rs1272407969 820 dbSNP
rs905243330 821 dbSNP
rs1023186669 826 dbSNP
rs1013612669 834 dbSNP
rs1446040883 836 dbSNP
rs536346458 837 dbSNP
rs1238876782 844 dbSNP
rs1045569676 852 dbSNP
rs551856595 857 dbSNP
rs1177805579 862 dbSNP
rs1459347119 863 dbSNP
rs1003241468 867 dbSNP
rs1384413872 879 dbSNP
rs1250167222 886 dbSNP
rs1336326433 910 dbSNP
rs573980063 911 dbSNP
rs896878209 916 dbSNP
rs774862008 921 dbSNP
rs1357656467 926 dbSNP
rs941175478 947 dbSNP
rs1292515874 951 dbSNP
rs1350995153 953 dbSNP
rs1004961690 957 dbSNP
rs1230200670 970 dbSNP
rs972275214 971 dbSNP
rs1349287858 972 dbSNP
rs557031308 974 dbSNP
rs912058002 978 dbSNP
rs1049655002 979 dbSNP
rs932585320 980 dbSNP
rs987615825 992 dbSNP
rs1300024645 994 dbSNP
rs1335177237 995 dbSNP
rs922619531 996 dbSNP
rs1352270200 997 dbSNP
rs1174449027 998 dbSNP
rs1286441243 998 dbSNP
rs1409128429 999 dbSNP
rs1375878245 1001 dbSNP
rs1304349115 1006 dbSNP
rs1233324017 1015 dbSNP
rs1312019280 1015 dbSNP
rs1335113579 1015 dbSNP
rs1342403991 1015 dbSNP
rs1370883471 1015 dbSNP
rs139018827 1015 dbSNP
rs559283675 1015 dbSNP
rs56716510 1015 dbSNP
rs761145396 1015 dbSNP
rs780238043 1015 dbSNP
rs750648799 1016 dbSNP
rs771525230 1016 dbSNP
rs537761961 1017 dbSNP
rs1274941201 1018 dbSNP
rs571911968 1018 dbSNP
rs934649757 1021 dbSNP
rs571818063 1026 dbSNP
rs953677654 1028 dbSNP
rs1028052039 1029 dbSNP
rs975594949 1034 dbSNP
rs1452757949 1046 dbSNP
rs978851764 1048 dbSNP
rs967694488 1049 dbSNP
rs1453894125 1050 dbSNP
rs1409836975 1052 dbSNP
rs1022006380 1053 dbSNP
rs1475804398 1058 dbSNP
rs968900034 1062 dbSNP
rs1166001419 1063 dbSNP
rs1395678926 1065 dbSNP
rs1387326576 1071 dbSNP
rs1324934142 1075 dbSNP
rs1023575807 1079 dbSNP
rs991751318 1082 dbSNP
rs960604484 1095 dbSNP
rs1260075003 1108 dbSNP
rs1439565587 1110 dbSNP
rs1297797677 1115 dbSNP
rs189619918 1134 dbSNP
rs1226640184 1135 dbSNP
rs1251142450 1137 dbSNP
rs768114439 1143 dbSNP
rs762463121 1144 dbSNP
rs1035913347 1145 dbSNP
rs75409038 1158 dbSNP
rs1265917265 1163 dbSNP
rs1003349951 1165 dbSNP
rs1189312939 1168 dbSNP
rs1250120722 1178 dbSNP
rs1447963218 1183 dbSNP
rs1249514913 1185 dbSNP
rs373494494 1190 dbSNP
rs1372340838 1191 dbSNP
rs1458243946 1198 dbSNP
rs896845970 1200 dbSNP
rs546108858 1206 dbSNP
rs1460451650 1212 dbSNP
rs1320717431 1216 dbSNP
rs930751408 1218 dbSNP
rs1216048276 1219 dbSNP
rs1294433386 1234 dbSNP
rs899163880 1235 dbSNP
rs1247448049 1241 dbSNP
rs1271761158 1243 dbSNP
rs1036358472 1255 dbSNP
rs1209437061 1256 dbSNP
rs769554422 1262 dbSNP
rs1463698634 1263 dbSNP
rs912110749 1266 dbSNP
rs1005742667 1267 dbSNP
rs1424111166 1269 dbSNP
rs1189427362 1271 dbSNP
rs932152545 1273 dbSNP
rs745616591 1274 dbSNP
rs888268593 1275 dbSNP
rs1355959767 1277 dbSNP
rs1314650624 1278 dbSNP
rs1390140987 1282 dbSNP
rs1394003096 1285 dbSNP
rs1378741978 1288 dbSNP
rs1050064530 1290 dbSNP
rs781087443 1292 dbSNP
rs901046211 1296 dbSNP
rs914997183 1297 dbSNP
rs1398145827 1312 dbSNP
rs770650565 1313 dbSNP
rs1229601854 1314 dbSNP
rs546764154 1321 dbSNP
rs1003893225 1322 dbSNP
rs924633980 1324 dbSNP
rs978820667 1325 dbSNP
rs115251840 1338 dbSNP
rs916071689 1341 dbSNP
rs994877098 1343 dbSNP
rs992035935 1348 dbSNP
rs1163133740 1349 dbSNP
rs899214685 1356 dbSNP
rs1485234584 1362 dbSNP
rs1182763160 1370 dbSNP
rs577443847 1371 dbSNP
rs550279886 1372 dbSNP
rs1186782033 1375 dbSNP
rs1157807826 1382 dbSNP
rs972304534 1390 dbSNP
rs1467296678 1392 dbSNP
rs1465958136 1396 dbSNP
rs1245692588 1401 dbSNP
rs1311419082 1402 dbSNP
rs867845705 1408 dbSNP
rs1410866700 1409 dbSNP
rs1207511236 1411 dbSNP
rs140722428 1412 dbSNP
rs1052009575 1415 dbSNP
rs564872360 1417 dbSNP
rs1005299785 1418 dbSNP
rs1242505750 1425 dbSNP
rs544894304 1426 dbSNP
rs888227145 1427 dbSNP
rs572750657 1439 dbSNP
rs1437612250 1441 dbSNP
rs1028075169 1444 dbSNP
rs1319974440 1448 dbSNP
rs922122215 1453 dbSNP
rs1043578842 1454 dbSNP
rs997059776 1455 dbSNP
rs559072417 1456 dbSNP
rs1434421833 1459 dbSNP
rs1171322714 1460 dbSNP
rs1162044602 1461 dbSNP
rs35160930 1461 dbSNP
rs1457815631 1462 dbSNP
rs59535902 1469 dbSNP
rs574012954 1487 dbSNP
rs542136069 1488 dbSNP
rs998793576 1492 dbSNP
rs1369764497 1500 dbSNP
rs1438808601 1506 dbSNP
rs1450979751 1518 dbSNP
rs1387867369 1519 dbSNP
rs956340995 1520 dbSNP
rs903180468 1534 dbSNP
rs1043111994 1549 dbSNP
rs1468582392 1551 dbSNP
rs947419243 1558 dbSNP
rs915944319 1559 dbSNP
rs1208034880 1562 dbSNP
rs982042707 1575 dbSNP
rs1449738697 1577 dbSNP
rs1188629378 1583 dbSNP
rs1055904096 1588 dbSNP
rs938823014 1599 dbSNP
rs969749013 1600 dbSNP
rs1023553120 1606 dbSNP
rs557343744 1610 dbSNP
rs928837011 1621 dbSNP
rs184338063 1622 dbSNP
rs963194279 1628 dbSNP
rs578059072 1629 dbSNP
rs1366166104 1631 dbSNP
rs908210704 1642 dbSNP
rs12297911 1644 dbSNP
rs750732288 1645 dbSNP
rs375259663 1646 dbSNP
rs757702135 1647 dbSNP
rs996195837 1651 dbSNP
rs900717828 1653 dbSNP
rs1043342457 1655 dbSNP
rs1428155456 1662 dbSNP
rs947514062 1664 dbSNP
rs1240003995 1670 dbSNP
rs1475257104 1672 dbSNP
rs1167652960 1674 dbSNP
rs1478136626 1689 dbSNP
rs1474536720 1692 dbSNP
rs1164278046 1699 dbSNP
rs142781630 1700 dbSNP
rs913425108 1700 dbSNP
rs965187979 1704 dbSNP
rs1316412758 1705 dbSNP
rs1196073826 1711 dbSNP
rs1432526737 1712 dbSNP
rs1344849568 1715 dbSNP
rs1019495877 1721 dbSNP
rs1284637273 1723 dbSNP
rs998762586 1726 dbSNP
rs1052169464 1729 dbSNP
rs903066441 1732 dbSNP
rs1207191580 1735 dbSNP
rs1042983573 1736 dbSNP
rs1329155420 1750 dbSNP
rs935101836 1772 dbSNP
rs1481986824 1777 dbSNP
rs192524895 1784 dbSNP
rs376385620 1791 dbSNP
rs1446133513 1796 dbSNP
rs1211222387 1798 dbSNP
rs868420149 1807 dbSNP
rs555963541 1809 dbSNP
rs1484909641 1813 dbSNP
rs1273186491 1817 dbSNP
rs1413350473 1841 dbSNP
rs1232540075 1853 dbSNP
rs1336886535 1855 dbSNP
rs1407527935 1855 dbSNP
rs139866151 1860 dbSNP
rs1056271935 1862 dbSNP
rs1290813823 1864 dbSNP
rs947751961 1869 dbSNP
rs1350302202 1873 dbSNP
rs757689112 1883 dbSNP
rs916453585 1886 dbSNP
rs150965429 1887 dbSNP
rs1412701872 1893 dbSNP
rs928805726 1894 dbSNP
rs6580826 1899 dbSNP
rs541238741 1903 dbSNP
rs983499918 1908 dbSNP
rs1170307699 1910 dbSNP
rs954920706 1918 dbSNP
rs1349477687 1928 dbSNP
rs1219398489 1933 dbSNP
rs762116205 1934 dbSNP
rs1412053666 1936 dbSNP
rs1210637752 1944 dbSNP
rs752005512 1945 dbSNP
rs996551638 1948 dbSNP
rs900519660 1950 dbSNP
rs187042678 1955 dbSNP
rs1232322908 1957 dbSNP
rs985072952 1958 dbSNP
rs1011864220 1960 dbSNP
rs1393510719 1965 dbSNP
rs1432615098 1966 dbSNP
rs1172855125 1969 dbSNP
rs1397086321 1972 dbSNP
rs553161214 1981 dbSNP
rs764642150 1983 dbSNP
rs1053320217 1989 dbSNP
rs570910546 2005 dbSNP
rs1334620540 2007 dbSNP
rs938865915 2020 dbSNP
rs952469294 2025 dbSNP
rs551268631 2029 dbSNP
rs182408062 2030 dbSNP
rs920960632 2036 dbSNP
rs1275853515 2037 dbSNP
rs528326531 2041 dbSNP
rs373438922 2043 dbSNP
rs975562504 2045 dbSNP
rs1270062403 2048 dbSNP
rs1272924804 2051 dbSNP
rs780759002 2054 dbSNP
rs1350360051 2057 dbSNP
rs145154375 2058 dbSNP
rs1294326380 2059 dbSNP
rs1373385134 2061 dbSNP
rs1463361945 2062 dbSNP
rs1166020402 2070 dbSNP
rs192177366 2076 dbSNP
rs973288631 2080 dbSNP
rs1327414744 2081 dbSNP
rs941993238 2082 dbSNP
rs977214776 2083 dbSNP
rs967224073 2084 dbSNP
rs954581904 2085 dbSNP
rs1021934551 2087 dbSNP
rs1011523464 2092 dbSNP
rs1270111735 2098 dbSNP
rs139525914 2109 dbSNP
rs974879066 2110 dbSNP
rs965059126 2120 dbSNP
rs1011833252 2124 dbSNP
rs1388793708 2127 dbSNP
rs1264129429 2129 dbSNP
rs892013332 2133 dbSNP
rs1160674359 2135 dbSNP
rs1034393554 2139 dbSNP
rs1455603672 2142 dbSNP
rs1475519067 2145 dbSNP
rs1166443735 2164 dbSNP
rs1391593919 2168 dbSNP
rs1003422515 2169 dbSNP
rs775019394 2170 dbSNP
rs907385433 2174 dbSNP
rs1380879526 2179 dbSNP
rs1318118158 2184 dbSNP
rs1046551659 2187 dbSNP
rs764771901 2196 dbSNP
rs1235628445 2201 dbSNP
rs1292011622 2201 dbSNP
rs947865986 2202 dbSNP
rs1163638458 2209 dbSNP
rs1002906172 2210 dbSNP
rs907263570 2211 dbSNP
rs1260842207 2219 dbSNP
rs577239405 2225 dbSNP
rs1036422580 2229 dbSNP
rs1189892794 2232 dbSNP
rs1187156712 2246 dbSNP
rs940833239 2258 dbSNP
rs1159277718 2260 dbSNP
rs759176335 2268 dbSNP
rs1250010861 2278 dbSNP
rs563665488 2278 dbSNP
rs543887621 2279 dbSNP
rs1206863194 2283 dbSNP
rs552286792 2283 dbSNP
rs578104756 2285 dbSNP
rs933131912 2290 dbSNP
rs775901946 2305 dbSNP
rs1309298296 2308 dbSNP
rs975223103 2314 dbSNP
rs187288344 2315 dbSNP
rs762790434 2317 dbSNP
rs541762207 2318 dbSNP
rs1354731205 2319 dbSNP
rs369738309 2327 dbSNP
rs10516 2329 dbSNP
rs1177251008 2331 dbSNP
rs920918761 2336 dbSNP
rs1416823511 2337 dbSNP
rs1157828636 2340 dbSNP
rs11341 2341 dbSNP
rs1365422808 2345 dbSNP
rs1003148533 2346 dbSNP
rs1462990379 2349 dbSNP
rs971958563 2353 dbSNP
rs1371227730 2354 dbSNP
rs1023173754 2357 dbSNP
rs1432191987 2363 dbSNP
rs943686108 2367 dbSNP
rs3889974 2368 dbSNP
rs1236180144 2373 dbSNP
rs570223868 2375 dbSNP
rs1277981693 2376 dbSNP
rs1311412096 2378 dbSNP
rs1037426541 2379 dbSNP
rs1411421419 2380 dbSNP
rs1479338882 2387 dbSNP
rs977183735 2388 dbSNP
rs1177531321 2399 dbSNP
rs967193139 2403 dbSNP
rs1455339590 2410 dbSNP
rs369058228 2414 dbSNP
rs536704242 2433 dbSNP
rs1392188500 2438 dbSNP
rs147355512 2439 dbSNP
rs1173086695 2441 dbSNP
rs1353325472 2441 dbSNP
rs749350025 2443 dbSNP
rs1461537626 2444 dbSNP
rs933286101 2447 dbSNP
rs923094612 2451 dbSNP
rs1038826458 2456 dbSNP
rs1302987248 2472 dbSNP
rs2519 2473 dbSNP
rs1224489703 2480 dbSNP
rs1034689821 2496 dbSNP
rs1450340129 2499 dbSNP
rs528389943 2512 dbSNP
rs1297621548 2513 dbSNP
rs565663657 2515 dbSNP
rs1229509174 2517 dbSNP
rs549243665 2520 dbSNP
rs1469439585 2527 dbSNP
rs1014947240 2529 dbSNP
rs1225723435 2531 dbSNP
rs956005443 2537 dbSNP
rs1475936241 2543 dbSNP
rs142673669 2557 dbSNP
rs1417950199 2562 dbSNP
rs116165275 2565 dbSNP
rs971635933 2567 dbSNP
rs543555571 2571 dbSNP
rs932148260 2576 dbSNP
rs900712464 2581 dbSNP
rs1325405032 2584 dbSNP
rs1346074891 2593 dbSNP
rs554105649 2614 dbSNP
rs1431194937 2615 dbSNP
rs1290456423 2629 dbSNP
rs1359757324 2634 dbSNP
rs1430226859 2639 dbSNP
rs746064027 2641 dbSNP
rs564494885 2651 dbSNP
rs943658272 2655 dbSNP
rs912263374 2665 dbSNP
rs977152594 2668 dbSNP
rs562145519 2675 dbSNP
rs781275616 2676 dbSNP
rs541467211 2682 dbSNP
rs572456064 2683 dbSNP
rs3858627 2685 dbSNP
rs751987064 2689 dbSNP
rs542508559 2690 dbSNP
rs764552193 2691 dbSNP
rs1206481629 2692 dbSNP
rs1408947414 2695 dbSNP
rs1402711035 2700 dbSNP
rs1484279186 2703 dbSNP
rs971352599 2704 dbSNP
rs1343178005 2712 dbSNP
rs372802787 2713 dbSNP
rs114911725 2716 dbSNP
rs758950949 2717 dbSNP
rs1220391585 2724 dbSNP
rs1283140301 2728 dbSNP
rs1350788675 2738 dbSNP
rs556678992 2743 dbSNP
rs1365427880 2745 dbSNP
rs901724966 2751 dbSNP
rs1212119278 2752 dbSNP
rs1260224806 2759 dbSNP
rs1039376899 2773 dbSNP
rs1409438386 2781 dbSNP
rs536763345 2784 dbSNP
rs148703634 2789 dbSNP
rs1233480297 2790 dbSNP
rs566067960 2796 dbSNP
rs764760650 2820 dbSNP
rs1352148079 2837 dbSNP
rs892995893 2849 dbSNP
rs184176564 2850 dbSNP
rs117392395 2856 dbSNP
rs1178341150 2865 dbSNP
rs900683379 2874 dbSNP
rs1412632891 2876 dbSNP
rs1333461328 2877 dbSNP
rs564531480 2880 dbSNP
rs1040636942 2883 dbSNP
rs1335762968 2891 dbSNP
rs924693891 2893 dbSNP
rs546435755 2896 dbSNP
rs1277395455 2899 dbSNP
rs1375777595 2906 dbSNP
rs1235443063 2910 dbSNP
rs1282975725 2910 dbSNP
rs981434004 2915 dbSNP
rs1200348152 2918 dbSNP
rs1274331147 2920 dbSNP
rs1009179107 2932 dbSNP
rs916143799 2936 dbSNP
rs1237762626 2938 dbSNP
rs1424546731 2941 dbSNP
rs890795172 2942 dbSNP
rs1041439466 2946 dbSNP
rs1195754057 2947 dbSNP
rs369554954 2956 dbSNP
rs1473846444 2958 dbSNP
rs1424301919 2973 dbSNP
rs1476938189 2979 dbSNP
rs565660460 2994 dbSNP
rs376307365 2999 dbSNP
rs1397187353 3004 dbSNP
rs1411123496 3006 dbSNP
rs1181865225 3007 dbSNP
rs549053056 3011 dbSNP
rs962838803 3013 dbSNP
rs1017092329 3018 dbSNP
rs1305179678 3019 dbSNP
rs535693258 3029 dbSNP
rs950430756 3030 dbSNP
rs1026490012 3032 dbSNP
rs914288937 3033 dbSNP
rs901522242 3040 dbSNP
rs1211790027 3050 dbSNP
rs1309969809 3055 dbSNP
rs1257445648 3057 dbSNP
rs867700287 3058 dbSNP
rs1261939338 3072 dbSNP
rs1251398694 3075 dbSNP
rs1449633815 3082 dbSNP
rs937177170 3083 dbSNP
rs1017500214 3085 dbSNP
rs1373569146 3085 dbSNP
rs1228949906 3088 dbSNP
rs1422201226 3095 dbSNP
rs1461535415 3096 dbSNP
rs569760184 3104 dbSNP
rs191924092 3105 dbSNP
rs981321032 3107 dbSNP
rs1386528888 3113 dbSNP
rs1390546423 3115 dbSNP
rs533139433 3122 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084082. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_SigmaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' uuccucguuccgccGUAGAGa 5'
                        |||||| 
Target 5' --------aaacucCAUCUCa 3'
1 - 13
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM4903830
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / CTLTD_shCTL_b
Location of target site NM_007210 | 3UTR | CAGGAAAAAAAAAAAAAAAAAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903831
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / 124TD_shELAVL3_a
Location of target site NM_007210 | 3UTR | CAGGAAAAAAAAAAAAAAAAAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084082
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep2_SigmaAb
Location of target site ENST00000543196.2 | 3UTR | AAACUCCAUCUCAGGAAAAAAAAAAAAAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
94 hsa-miR-4708-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT095681 RBM27 RNA binding motif protein 27 2 4
MIRT104033 USP42 ubiquitin specific peptidase 42 2 6
MIRT114773 CMPK1 cytidine/uridine monophosphate kinase 1 2 2
MIRT246923 CCND1 cyclin D1 2 2
MIRT392569 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT443949 LRIT3 leucine rich repeat, Ig-like and transmembrane domains 3 2 2
MIRT446695 PAPPA pappalysin 1 2 2
MIRT447383 VOPP1 vesicular, overexpressed in cancer, prosurvival protein 1 2 2
MIRT449321 FAM120AOS family with sequence similarity 120A opposite strand 2 2
MIRT449717 C1orf61 chromosome 1 open reading frame 61 2 2
MIRT449738 TAB2 TGF-beta activated kinase 1/MAP3K7 binding protein 2 2 2
MIRT450531 PGLS 6-phosphogluconolactonase 2 2
MIRT455650 YARS tyrosyl-tRNA synthetase 2 2
MIRT458036 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT463468 ZC3HAV1L zinc finger CCCH-type containing, antiviral 1 like 2 2
MIRT466677 TAF1D TATA-box binding protein associated factor, RNA polymerase I subunit D 2 4
MIRT467789 SLC2A14 solute carrier family 2 member 14 2 2
MIRT468167 SGPL1 sphingosine-1-phosphate lyase 1 2 2
MIRT468652 SECISBP2L SECIS binding protein 2 like 2 6
MIRT469380 RER1 retention in endoplasmic reticulum sorting receptor 1 2 2
MIRT470346 PPP2R5E protein phosphatase 2 regulatory subunit B'epsilon 2 2
MIRT472418 NCKAP1 NCK associated protein 1 2 2
MIRT474612 KLF3 Kruppel like factor 3 2 2
MIRT478703 CSRNP2 cysteine and serine rich nuclear protein 2 2 2
MIRT481008 BBC3 BCL2 binding component 3 2 4
MIRT483098 TFPI tissue factor pathway inhibitor 2 2
MIRT485113 SHISA6 shisa family member 6 2 2
MIRT497533 ZNF607 zinc finger protein 607 2 2
MIRT500644 TUBB2A tubulin beta 2A class IIa 2 6
MIRT500890 STRN striatin 2 4
MIRT501900 MED13 mediator complex subunit 13 2 2
MIRT506646 MAPK1 mitogen-activated protein kinase 1 2 4
MIRT512675 ENO4 enolase family member 4 2 2
MIRT516977 OR7D2 olfactory receptor family 7 subfamily D member 2 2 2
MIRT528754 RPS27 ribosomal protein S27 2 6
MIRT539670 ZBTB44 zinc finger and BTB domain containing 44 2 2
MIRT544129 PPIL1 peptidylprolyl isomerase like 1 2 2
MIRT546382 STOX2 storkhead box 2 2 4
MIRT562143 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT568713 TMEM30B transmembrane protein 30B 2 2
MIRT571029 CENPP centromere protein P 2 2
MIRT572781 ZNF277 zinc finger protein 277 2 2
MIRT573162 SLC30A9 solute carrier family 30 member 9 2 2
MIRT609126 NUDT3 nudix hydrolase 3 2 2
MIRT609284 OAS3 2'-5'-oligoadenylate synthetase 3 2 2
MIRT613430 GALNT6 polypeptide N-acetylgalactosaminyltransferase 6 2 2
MIRT613770 TTC38 tetratricopeptide repeat domain 38 2 2
MIRT616645 LRAT lecithin retinol acyltransferase 2 4
MIRT630892 SLC25A33 solute carrier family 25 member 33 2 2
MIRT636526 FAXC failed axon connections homolog 2 4
MIRT641394 NUBPL nucleotide binding protein like 2 2
MIRT641412 SCN2B sodium voltage-gated channel beta subunit 2 2 2
MIRT642528 CERS4 ceramide synthase 4 2 2
MIRT643186 HYPK huntingtin interacting protein K 2 2
MIRT647800 FRMD8 FERM domain containing 8 2 2
MIRT652150 TRIM71 tripartite motif containing 71 2 2
MIRT652602 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT661606 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT666339 SKAP2 src kinase associated phosphoprotein 2 2 2
MIRT670414 ELP2 elongator acetyltransferase complex subunit 2 2 2
MIRT671122 ZNF573 zinc finger protein 573 2 2
MIRT671155 ANKRD9 ankyrin repeat domain 9 2 2
MIRT671338 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT671869 ZNF429 zinc finger protein 429 2 2
MIRT671974 IKZF3 IKAROS family zinc finger 3 2 2
MIRT672064 KIAA0930 KIAA0930 2 2
MIRT672654 SLC25A16 solute carrier family 25 member 16 2 4
MIRT672673 GTF2H5 general transcription factor IIH subunit 5 2 2
MIRT672771 UBE2V2 ubiquitin conjugating enzyme E2 V2 2 2
MIRT672929 LRRC2 leucine rich repeat containing 2 2 2
MIRT673159 C1orf50 chromosome 1 open reading frame 50 2 2
MIRT673272 RUNDC1 RUN domain containing 1 2 2
MIRT673332 THAP1 THAP domain containing 1 2 2
MIRT673351 SLC35F6 solute carrier family 35 member F6 2 2
MIRT673667 ZNF440 zinc finger protein 440 2 2
MIRT673904 DCTN6 dynactin subunit 6 2 2
MIRT674096 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674401 MYCBP MYC binding protein 2 2
MIRT674525 PRR23A proline rich 23A 2 2
MIRT674793 NPR1 natriuretic peptide receptor 1 2 2
MIRT674833 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 2 2
MIRT675066 FGD6 FYVE, RhoGEF and PH domain containing 6 2 2
MIRT675080 CCR6 C-C motif chemokine receptor 6 2 2
MIRT675126 FSD2 fibronectin type III and SPRY domain containing 2 2 2
MIRT679401 IL10RB interleukin 10 receptor subunit beta 2 2
MIRT689229 RPS19 ribosomal protein S19 2 2
MIRT694008 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT699671 SFT2D2 SFT2 domain containing 2 2 2
MIRT706213 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT706548 GJD2 gap junction protein delta 2 2 2
MIRT707418 RRP7A ribosomal RNA processing 7 homolog A 2 2
MIRT710648 GLUL glutamate-ammonia ligase 2 2
MIRT719393 NPCA1 Nasopharyngeal carcinoma 1 2 2
MIRT720166 PNPO pyridoxamine 5'-phosphate oxidase 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4708-5p Fulvestrant 17756771 NSC719276 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-4708-5p Tamoxifen 2733525 NSC180973 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-4708-5p Tripterygium wilfordii Hook F sensitive tissue
hsa-miR-4708-5p Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-4708-5p Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-4708-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)

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