pre-miRNA Information
pre-miRNA hsa-mir-4708   
Genomic Coordinates chr14: 65335117 - 65335183
Description Homo sapiens miR-4708 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4708-5p
Sequence 9| AGAGAUGCCGCCUUGCUCCUU |29
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1017378847 9 dbSNP
rs750825813 10 dbSNP
rs1297395738 19 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TTC38   
Synonyms LL22NC03-5H6.5
Description tetratricopeptide repeat domain 38
Transcript NM_017931   
Expression
Putative miRNA Targets on TTC38
3'UTR of TTC38
(miRNA target sites are highlighted)
>TTC38|NM_017931|3'UTR
   1 GCCAGCCTGGCCGCCTCCACCCTGCAGAACCTCAGTGGTGGCGTCACTGCGTCCAGTCAGCTGCTCCACCGGGTTAGGGT
  81 CAGGAGACGGCCAGAGCCTGTTTGTTAGGGCTGTTAGAGGGTGATCTTCAGTTTTACAGGAAGTGGGTCACGGGTTAATT
 161 TTAAATGTGATTCCGAATCTCCTTTCAGTCCTCGAGAAGGGCCAATGAGCATTTTTCAGCAGTCACAGCCAGTGTGAGTG
 241 CTGCTCTTTCCACCTGCCTTGCAAATTCTGTTTCCCAGGGGAATGTGTCTACTGCCTGGTGGTTCAAAGGTTGGAAGGCA
 321 GGGCAGAGGTGGGGGCTGATTCTGCTGGGACAGGTCTTCCAGAGGCAGCCTCCCCCCACTGCCTGTCCCCGTCCCCACCA
 401 GGCTGCCCTTGGGATGGACCTTTTCATTCTTTTCTTTATATTCTAGACAGTCTCTGTTGTCTCATTGTGTTGCTGTCCCA
 481 TTTTTCAGGTGAGGGTACCGGGGTAGGGGAGTGGCCTGCCCAGGGTCACACTATGAGAGGCCCCCACCTGCTGCCTTTGG
 561 ACGCAGCCCCCTGCTGCTGCATCCACCACCCTTCTTACAGATCAGCGCGCACATGGGGTCCTTCTGCTGTCTCTGGGGCG
 641 AGTCTTGGAGCCCCCTGGGGGGCTCTGTTGGTGCTGATTTGGACCCGTTTCTCTTTTTAAACTGCACATCATAACAGGGC
 721 TTCATGTCGAGCATGATTTTAATCATAAATGCACTTCTGAGGTGCAAGGATTGAGCTCAGAGCTGCTCTGTTGTGGCAAA
 801 ACCCAAAGTGCTGTGATGTGTGGCTGTGACAAGCCTGGAGCGGGTCCTGTGAGCGCCGCCTCTGTCTCCTGCTTCCCCAC
 881 TGAACGCCTGCTGAATGTGCCGCTGACTCAGCTGTGCTGCTTTCAGCCCTCCTGTGAGGGGCGGTCCCAGTGCACAGATG
 961 TTTTTCAAGTTCCTCAGTTTGTACTGAAATTAGGGATTCATCAGGGCAGGAAGCAGGCAGGCCTCTCAGAAGGGAGAGGA
1041 GGCCTCCAAATCTATTGAGTCCCCACAGTTTGCTCAAGCCCAGGCAAATTTCTGTGATTAAAATGAATTCATCAGTTCCT
1121 CCAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uuCCUCGUUCCGCCGUAGAGa 5'
            | ||||:|  ||| |||| 
Target 5' agGAAGCAGGCAGGCCTCTCa 3'
1008 - 1028 135.00 -20.50
2
miRNA  3' uucCUCGUUCCG----C-CGUAGAGa 5'
             ||| |:|||    | ||||:|: 
Target 5' ctcGAGAAGGGCCAATGAGCATTTTt 3'
191 - 216 124.00 -13.30
3
miRNA  3' uuccuCGUUCCGCCGUAGAGa 5'
               |::|  | | ||||| 
Target 5' taaatGTGATTCCGAATCTCc 3'
162 - 182 116.00 -5.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30494112 7 COSMIC
COSN31497119 18 COSMIC
COSN31481911 34 COSMIC
COSN30111611 43 COSMIC
COSN13921217 44 COSMIC
COSN5865671 128 COSMIC
COSN26585690 146 COSMIC
COSN25091607 259 COSMIC
COSN24904650 387 COSMIC
COSN5993847 887 COSMIC
COSN8020299 944 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs776821650 5 dbSNP
rs1252568541 6 dbSNP
rs761928247 10 dbSNP
rs370159601 13 dbSNP
rs750681441 14 dbSNP
rs759350048 21 dbSNP
rs767439732 22 dbSNP
rs752640013 24 dbSNP
rs57993528 28 dbSNP
rs777121703 39 dbSNP
rs988374891 40 dbSNP
rs1376082846 42 dbSNP
rs577801335 43 dbSNP
rs374930102 44 dbSNP
rs1372225956 47 dbSNP
rs778468694 51 dbSNP
rs745532056 52 dbSNP
rs979557722 61 dbSNP
rs1040669617 65 dbSNP
rs543650298 69 dbSNP
rs185955357 70 dbSNP
rs573950872 71 dbSNP
rs991204562 72 dbSNP
rs1260146874 77 dbSNP
rs543316344 82 dbSNP
rs1165080413 85 dbSNP
rs949768716 90 dbSNP
rs1046950312 100 dbSNP
rs1424397531 101 dbSNP
rs111839774 105 dbSNP
rs994033052 107 dbSNP
rs1357134281 111 dbSNP
rs1332061815 114 dbSNP
rs1034934340 119 dbSNP
rs528113421 122 dbSNP
rs11556944 125 dbSNP
rs1289522347 127 dbSNP
rs941314003 132 dbSNP
rs1038200357 138 dbSNP
rs1386657092 139 dbSNP
rs551171044 143 dbSNP
rs1374775280 144 dbSNP
rs1475717048 145 dbSNP
rs899706324 148 dbSNP
rs148046728 152 dbSNP
rs763246864 153 dbSNP
rs1263126798 155 dbSNP
rs141739653 163 dbSNP
rs117945146 168 dbSNP
rs191676607 175 dbSNP
rs1463167652 176 dbSNP
rs1220519349 182 dbSNP
rs1009966158 191 dbSNP
rs1020984623 194 dbSNP
rs979222380 195 dbSNP
rs371392806 206 dbSNP
rs1481540881 218 dbSNP
rs923581909 227 dbSNP
rs968697310 229 dbSNP
rs376085308 237 dbSNP
rs1326943137 243 dbSNP
rs1297658265 246 dbSNP
rs1437286081 247 dbSNP
rs1386587030 252 dbSNP
rs1320083968 258 dbSNP
rs979694090 275 dbSNP
rs1161820466 285 dbSNP
rs41279833 285 dbSNP
rs959542375 292 dbSNP
rs1237563262 300 dbSNP
rs991172002 302 dbSNP
rs917003202 310 dbSNP
rs949851861 311 dbSNP
rs1447084179 328 dbSNP
rs1184950008 329 dbSNP
rs753136969 332 dbSNP
rs1385434762 334 dbSNP
rs982839481 344 dbSNP
rs1452974568 355 dbSNP
rs751991398 361 dbSNP
rs908233950 364 dbSNP
rs1339837762 365 dbSNP
rs1252962492 366 dbSNP
rs145958827 371 dbSNP
rs565907006 374 dbSNP
rs1356656326 375 dbSNP
rs942092766 376 dbSNP
rs535052289 378 dbSNP
rs1397693393 381 dbSNP
rs1170974162 391 dbSNP
rs1298103396 392 dbSNP
rs1398813937 403 dbSNP
rs897823995 413 dbSNP
rs921064290 414 dbSNP
rs1478733982 421 dbSNP
rs1244557446 427 dbSNP
rs932484952 432 dbSNP
rs1438139051 437 dbSNP
rs1253678387 441 dbSNP
rs1202809312 445 dbSNP
rs1341364109 447 dbSNP
rs1281022011 448 dbSNP
rs57866552 449 dbSNP
rs753360584 451 dbSNP
rs896372003 455 dbSNP
rs577763998 460 dbSNP
rs778849834 466 dbSNP
rs1408449836 468 dbSNP
rs1370428009 470 dbSNP
rs748098262 500 dbSNP
rs182088366 501 dbSNP
rs1171538740 504 dbSNP
rs979576245 512 dbSNP
rs1413804229 517 dbSNP
rs903857859 525 dbSNP
rs1227959893 529 dbSNP
rs1482613020 533 dbSNP
rs1257317048 534 dbSNP
rs1258057363 534 dbSNP
rs956448510 536 dbSNP
rs975715572 542 dbSNP
rs1276560065 546 dbSNP
rs187134197 548 dbSNP
rs1330074223 549 dbSNP
rs1290460516 551 dbSNP
rs1226876868 554 dbSNP
rs1204971074 562 dbSNP
rs953588481 563 dbSNP
rs1033907188 564 dbSNP
rs58980421 567 dbSNP
rs913671136 568 dbSNP
rs1390313344 569 dbSNP
rs746849141 571 dbSNP
rs909358733 576 dbSNP
rs1418329644 577 dbSNP
rs1179765293 578 dbSNP
rs771151654 583 dbSNP
rs1209440901 585 dbSNP
rs1465408190 589 dbSNP
rs1270209118 595 dbSNP
rs1207086285 599 dbSNP
rs1328807092 600 dbSNP
rs564682278 601 dbSNP
rs982590159 607 dbSNP
rs542926584 608 dbSNP
rs1377604248 609 dbSNP
rs528806788 610 dbSNP
rs1366776728 612 dbSNP
rs962378242 614 dbSNP
rs12165966 625 dbSNP
rs1318060416 634 dbSNP
rs1177168255 640 dbSNP
rs776748938 641 dbSNP
rs1445995792 651 dbSNP
rs560025443 656 dbSNP
rs1394810940 657 dbSNP
rs1403410299 657 dbSNP
rs919303410 657 dbSNP
rs1290840445 659 dbSNP
rs374803589 661 dbSNP
rs1450114828 662 dbSNP
rs1057031308 666 dbSNP
rs1382539374 670 dbSNP
rs1186799353 686 dbSNP
rs921200149 687 dbSNP
rs1224162710 688 dbSNP
rs9615938 688 dbSNP
rs1320297822 696 dbSNP
rs1051364694 702 dbSNP
rs1289739766 703 dbSNP
rs1229811912 707 dbSNP
rs912436996 712 dbSNP
rs1263147828 714 dbSNP
rs945414630 719 dbSNP
rs1042487074 721 dbSNP
rs903837029 723 dbSNP
rs114403288 729 dbSNP
rs1030849485 730 dbSNP
rs564967637 732 dbSNP
rs530572657 735 dbSNP
rs12166072 758 dbSNP
rs956416217 768 dbSNP
rs1055070320 772 dbSNP
rs1193348819 775 dbSNP
rs1166782931 780 dbSNP
rs1029984475 782 dbSNP
rs550703121 783 dbSNP
rs895387967 789 dbSNP
rs559057380 791 dbSNP
rs1193174964 802 dbSNP
rs1013823076 806 dbSNP
rs1487681568 820 dbSNP
rs953054351 834 dbSNP
rs1206359840 839 dbSNP
rs561029808 842 dbSNP
rs1226944880 843 dbSNP
rs1025559017 844 dbSNP
rs950915898 854 dbSNP
rs1302898340 855 dbSNP
rs192471290 856 dbSNP
rs1308407739 859 dbSNP
rs1412811372 860 dbSNP
rs972224789 863 dbSNP
rs1015354916 865 dbSNP
rs919438486 878 dbSNP
rs941150424 880 dbSNP
rs769778747 886 dbSNP
rs775909128 887 dbSNP
rs1431621157 890 dbSNP
rs1057166622 892 dbSNP
rs1338155053 900 dbSNP
rs1183331025 902 dbSNP
rs920966298 903 dbSNP
rs1250201648 907 dbSNP
rs915897686 909 dbSNP
rs1483895404 915 dbSNP
rs1257212624 918 dbSNP
rs1207495889 920 dbSNP
rs1311237968 924 dbSNP
rs1406616856 926 dbSNP
rs1288605664 929 dbSNP
rs1229930789 930 dbSNP
rs1348432571 943 dbSNP
rs948781481 955 dbSNP
rs953940794 958 dbSNP
rs986738812 969 dbSNP
rs1045383436 995 dbSNP
rs912353018 1002 dbSNP
rs945244033 1003 dbSNP
rs1304651347 1004 dbSNP
rs978561063 1008 dbSNP
rs1001205811 1011 dbSNP
rs925354741 1015 dbSNP
rs1473750599 1020 dbSNP
rs936784421 1023 dbSNP
rs1410189998 1024 dbSNP
rs1181596454 1032 dbSNP
rs1052246562 1034 dbSNP
rs1216940064 1039 dbSNP
rs1179551362 1040 dbSNP
rs1258953051 1040 dbSNP
rs1285786823 1040 dbSNP
rs1317090556 1042 dbSNP
rs1215447696 1044 dbSNP
rs1482646930 1053 dbSNP
rs1268323749 1055 dbSNP
rs1210234272 1058 dbSNP
rs1326697530 1059 dbSNP
rs546556752 1061 dbSNP
rs892329756 1064 dbSNP
rs997253854 1067 dbSNP
rs1055038549 1076 dbSNP
rs895188970 1084 dbSNP
rs949627151 1085 dbSNP
rs1316016794 1091 dbSNP
rs5768362 1093 dbSNP
rs1200661397 1096 dbSNP
rs1046650198 1097 dbSNP
rs1007187323 1109 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084044. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep3 HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084066. RNA binding protein: AGO2. Condition:CLIP_noemetine_SantaCruzAb HITS-CLIP data was present in GSM1084067. RNA binding protein: AGO2. Condition:CLIP_emetine_SantaCruzAb HITS-CLIP data was present in GSM1084068. RNA binding protein: AGO2. Condition:CLIP_noemetine_SigmaAb HITS-CLIP data was present in GSM1084069. RNA binding protein: AGO2. Condition:CLIP_emetine_SigmaAb HITS-CLIP data was present in GSM1084074. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep1_SantaCruzAb HITS-CLIP data was present in GSM1084079. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_AbnovaAb HITS-CLIP data was present in GSM1084080. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_SantaCruzAb HITS-CLIP data was present in GSM1084081. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_SantaCruzAb HITS-CLIP data was present in GSM1084082. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_SigmaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084044
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep3
Location of target site ENST00000381031.3 | 3UTR | CAAGGGAAAAAAAAAAAAAAGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000381031.3 | 3UTR | UCAAGGGAAAAAAAAAAAAAAGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084066
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_SantaCruzAb
Location of target site ENST00000381031.3 | 3UTR | UCAAGGGAAAAAAAAAAAAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1084067
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_SantaCruzAb
Location of target site ENST00000381031.3 | 3UTR | UCAAGGGAAAAAAAAAAAAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM1084068
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_SigmaAb
Location of target site ENST00000381031.3 | 3UTR | UCAAGGGAAAAAAAAAAAAAAGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM1084069
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_SigmaAb
Location of target site ENST00000381031.3 | 3UTR | AAGGGAAAAAAAAAAAAAAGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM1084074
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep1_SantaCruzAb
Location of target site ENST00000381031.3 | 3UTR | UCAAGGGAAAAAAAAAAAAAAGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM1084079
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_AbnovaAb
Location of target site ENST00000381031.3 | 3UTR | AAGGGAAAAAAAAAAAAAAGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 9 for dataset GSM1084081
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_SantaCruzAb
Location of target site ENST00000381031.3 | 3UTR | UCAAGGGAAAAAAAAAAAAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 10 for dataset GSM1084082
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep2_SigmaAb
Location of target site ENST00000381031.3 | 3UTR | AAGGGAAAAAAAAAAAAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
94 hsa-miR-4708-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT095681 RBM27 RNA binding motif protein 27 2 4
MIRT104033 USP42 ubiquitin specific peptidase 42 2 6
MIRT114773 CMPK1 cytidine/uridine monophosphate kinase 1 2 2
MIRT246923 CCND1 cyclin D1 2 2
MIRT392569 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT443949 LRIT3 leucine rich repeat, Ig-like and transmembrane domains 3 2 2
MIRT446695 PAPPA pappalysin 1 2 2
MIRT447383 VOPP1 vesicular, overexpressed in cancer, prosurvival protein 1 2 2
MIRT449321 FAM120AOS family with sequence similarity 120A opposite strand 2 2
MIRT449717 C1orf61 chromosome 1 open reading frame 61 2 2
MIRT449738 TAB2 TGF-beta activated kinase 1/MAP3K7 binding protein 2 2 2
MIRT450531 PGLS 6-phosphogluconolactonase 2 2
MIRT455650 YARS tyrosyl-tRNA synthetase 2 2
MIRT458036 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT463468 ZC3HAV1L zinc finger CCCH-type containing, antiviral 1 like 2 2
MIRT466677 TAF1D TATA-box binding protein associated factor, RNA polymerase I subunit D 2 4
MIRT467789 SLC2A14 solute carrier family 2 member 14 2 2
MIRT468167 SGPL1 sphingosine-1-phosphate lyase 1 2 2
MIRT468652 SECISBP2L SECIS binding protein 2 like 2 6
MIRT469380 RER1 retention in endoplasmic reticulum sorting receptor 1 2 2
MIRT470346 PPP2R5E protein phosphatase 2 regulatory subunit B'epsilon 2 2
MIRT472418 NCKAP1 NCK associated protein 1 2 2
MIRT474612 KLF3 Kruppel like factor 3 2 2
MIRT478703 CSRNP2 cysteine and serine rich nuclear protein 2 2 2
MIRT481008 BBC3 BCL2 binding component 3 2 4
MIRT483098 TFPI tissue factor pathway inhibitor 2 2
MIRT485113 SHISA6 shisa family member 6 2 2
MIRT497533 ZNF607 zinc finger protein 607 2 2
MIRT500644 TUBB2A tubulin beta 2A class IIa 2 6
MIRT500890 STRN striatin 2 4
MIRT501900 MED13 mediator complex subunit 13 2 2
MIRT506646 MAPK1 mitogen-activated protein kinase 1 2 4
MIRT512675 ENO4 enolase family member 4 2 2
MIRT516977 OR7D2 olfactory receptor family 7 subfamily D member 2 2 2
MIRT528754 RPS27 ribosomal protein S27 2 6
MIRT539670 ZBTB44 zinc finger and BTB domain containing 44 2 2
MIRT544129 PPIL1 peptidylprolyl isomerase like 1 2 2
MIRT546382 STOX2 storkhead box 2 2 4
MIRT562143 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT568713 TMEM30B transmembrane protein 30B 2 2
MIRT571029 CENPP centromere protein P 2 2
MIRT572781 ZNF277 zinc finger protein 277 2 2
MIRT573162 SLC30A9 solute carrier family 30 member 9 2 2
MIRT609126 NUDT3 nudix hydrolase 3 2 2
MIRT609284 OAS3 2'-5'-oligoadenylate synthetase 3 2 2
MIRT613430 GALNT6 polypeptide N-acetylgalactosaminyltransferase 6 2 2
MIRT613770 TTC38 tetratricopeptide repeat domain 38 2 2
MIRT616645 LRAT lecithin retinol acyltransferase 2 4
MIRT630892 SLC25A33 solute carrier family 25 member 33 2 2
MIRT636526 FAXC failed axon connections homolog 2 4
MIRT641394 NUBPL nucleotide binding protein like 2 2
MIRT641412 SCN2B sodium voltage-gated channel beta subunit 2 2 2
MIRT642528 CERS4 ceramide synthase 4 2 2
MIRT643186 HYPK huntingtin interacting protein K 2 2
MIRT647800 FRMD8 FERM domain containing 8 2 2
MIRT652150 TRIM71 tripartite motif containing 71 2 2
MIRT652602 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT661606 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT666339 SKAP2 src kinase associated phosphoprotein 2 2 2
MIRT670414 ELP2 elongator acetyltransferase complex subunit 2 2 2
MIRT671122 ZNF573 zinc finger protein 573 2 2
MIRT671155 ANKRD9 ankyrin repeat domain 9 2 2
MIRT671338 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT671869 ZNF429 zinc finger protein 429 2 2
MIRT671974 IKZF3 IKAROS family zinc finger 3 2 2
MIRT672064 KIAA0930 KIAA0930 2 2
MIRT672654 SLC25A16 solute carrier family 25 member 16 2 4
MIRT672673 GTF2H5 general transcription factor IIH subunit 5 2 2
MIRT672771 UBE2V2 ubiquitin conjugating enzyme E2 V2 2 2
MIRT672929 LRRC2 leucine rich repeat containing 2 2 2
MIRT673159 C1orf50 chromosome 1 open reading frame 50 2 2
MIRT673272 RUNDC1 RUN domain containing 1 2 2
MIRT673332 THAP1 THAP domain containing 1 2 2
MIRT673351 SLC35F6 solute carrier family 35 member F6 2 2
MIRT673667 ZNF440 zinc finger protein 440 2 2
MIRT673904 DCTN6 dynactin subunit 6 2 2
MIRT674096 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674401 MYCBP MYC binding protein 2 2
MIRT674525 PRR23A proline rich 23A 2 2
MIRT674793 NPR1 natriuretic peptide receptor 1 2 2
MIRT674833 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 2 2
MIRT675066 FGD6 FYVE, RhoGEF and PH domain containing 6 2 2
MIRT675080 CCR6 C-C motif chemokine receptor 6 2 2
MIRT675126 FSD2 fibronectin type III and SPRY domain containing 2 2 2
MIRT679401 IL10RB interleukin 10 receptor subunit beta 2 2
MIRT689229 RPS19 ribosomal protein S19 2 2
MIRT694008 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT699671 SFT2D2 SFT2 domain containing 2 2 2
MIRT706213 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT706548 GJD2 gap junction protein delta 2 2 2
MIRT707418 RRP7A ribosomal RNA processing 7 homolog A 2 2
MIRT710648 GLUL glutamate-ammonia ligase 2 2
MIRT719393 NPCA1 Nasopharyngeal carcinoma 1 2 2
MIRT720166 PNPO pyridoxamine 5'-phosphate oxidase 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4708-5p Fulvestrant 17756771 NSC719276 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-4708-5p Tamoxifen 2733525 NSC180973 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-4708-5p Tripterygium wilfordii Hook F sensitive tissue
hsa-miR-4708-5p Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-4708-5p Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-4708-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)

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