pre-miRNA Information
pre-miRNA hsa-mir-4282   
Genomic Coordinates chr6: 72967687 - 72967753
Description Homo sapiens miR-4282 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4282
Sequence 40| UAAAAUUUGCAUCCAGGA |57
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN32074657 13 COSMIC
COSN6331413 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1195771339 5 dbSNP
rs755058572 6 dbSNP
rs1245753664 11 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ADAT1   
Synonyms HADAT1
Description adenosine deaminase, tRNA specific 1
Transcript NM_012091   
Expression
Putative miRNA Targets on ADAT1
3'UTR of ADAT1
(miRNA target sites are highlighted)
>ADAT1|NM_012091|3'UTR
   1 GAAGGAAATGTTTGCTCTGGTAGCAGGACCCTTCATCCTGAACTGCCTTCCTCCACGCAGGACAAGTCTTAGCTTTTTTG
  81 GTAGTTAAATCAGGGAACATTCTTTCTGAGCTTTGCATCTCTGTTGTGTAATACAGATGGAATCTGGAACTTAGAGCAAG
 161 CTATACTTGATTGAAGTAGCTCTCTGCTAAAATGGCATCTCACTAATGACCTCACTATCTGACTTCCATTGTGTTTTATT
 241 GCTTCTCTAAAATATGAAATCAGAGTTTGGAACATGATGCTTTGAAAGTACTCTGCAGCAGCTCTGTTTTATGGGTTCCT
 321 ACATTGATTCAGCAAATATTTATTGAGCTGAAATGATGTTTGACGCTCTGCAAGTTTTACAGCTTTGCCTAGCATAGCGA
 401 ATATATATTTTGTATTCCCAGCCTTTCTTTCTTCAGGGAGCCATTCTTTTCCCATTCTTCAGTGATCCTGCTCTGTGCCT
 481 CAGACTTGGCTGAAGCTAACCTTACTCCCTGGCTCTAGGAATAGCCTGTGAGCCAGCCCTGGACTGCCCTGGACTTGTTC
 561 TCAGAGGTATCAGGAAAGGCTTTCTGTTTTGATCTGGAGCTGTAAGGGTCACATAATCATGGGACTGCCGGTGGCCATCT
 641 TTTCCTACTACCTAGAGAAAGCCAGCAAAGAATGAAGGCAACAAAGGAAACAGCCAAGAGAATCAAAGATCTAGTAACAC
 721 TGTTTAGATGTCTCAATTATGTGAGACAGATTCCTGTTGTTATTTTGATTAAGCCTGTTTGTGTTGGTTTTCTGACTTAC
 801 AATTGAAAGAGTTCTGTCCAAAAAGCCAAAAGGTGGCCAGGCTTGGTGGCTCAGGCCTGTAATCCCAGCACTTTGGGAAG
 881 CCCAGGCAGGCAGATCACTTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACCTGGTGAAACCCTGTCTCTACTAAAAAT
 961 GCAAAAACTAGCCGGGCATGGTGGCGCACACCTGTAATCCTAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACC
1041 CAGGAGGCGGAGGTAGTGGTGAGCAAAGATCGTACCGCTGCACTCCAGCCTGGGTGATAGAGCAAGACCCTATCTCAAAA
1121 AAAAAAAAAAAAAAAAAAAAAGAAGCCAAAAGGCCCTGCAGCAAATCAGCAATAGACCCAGCAGCCAATCCTGTTTTAAC
1201 ATCGAATGTTTAACACTCAACTTCAGACCTTGAATGATTGACTGAAAATGGAAGCTCCCATGTTGGGGTTACTCAAGGTC
1281 CTTATTGGTTCTTCAGCATTTTGTGGCTATAAATATTTTTAAATAACAGTTGTATTGAGATATAATTCACAGACCATAAA
1361 ATTCACCCAACTAAAGTATACATTTTAAAAGTTTTTAGGCCGGGCACGGTGGCTTACGCCTGTAATTCCAACACTTTGGG
1441 AGGCTGAGGCAGGCAGATCACCTGAGGTCAGGAGTTCGAGACCAGTCTGGCCAACATGATGAAACCCCGTCTCTGCTAAA
1521 AATACAAAAATTAGCCGGGCATGGTGGTGCACGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCACTTGA
1601 ACCTGGGAGGCGGAGGTTGCAGTGAGTCAAGATCATGCCATTGCACTCCAGCCTGGGTGACAGAGTGAGATCCTGTCTCA
1681 AAAAAAAAAAAAAAAAATTTTTTTAGTATATCCACAGAGTTGTGCAACCATCAATTTTAGAACATTTTCATCACAAATTT
1761 TGTGCCTGTAATAGTTTCCTAGAGCTGTTTCTTAACGAAGTACCACAAGCTGGGTGGCTTAAGACAACAGAAATGTATTC
1841 CTGGCCGGGTGCAGTGGCTCACGCCTGTAATCCCAACACTTTAGGAGGCCGAGGTGGGCAGATCACGACGTCAGGAGATC
1921 AAGACCATCCTGGCCAACATGGTGAAGCCCCTTTCTACTAAAAATACAAAAATTAGCCAGGTGTATTGGCGCACGCCTAT
2001 AGTCCCAACTACTCAGGAGGCTGAGGCAGAAGAATCTCTCAAACCCAGGAGGTGGAGGTTGCAGTGAGCCAGGATCGTGC
2081 CACTGCACTCTAGCCTGGGTGACAGAGCAAGACTCCATCTCAAAAAATAAGAAGAAAAGACTGTATCCCCTTTCAGTTCT
2161 GGAGGCTAGAAGTCCAAACAGGTTGTTGGTGGGGCTTCTGCTTCCTCTAAAAGCTTTAGGGCAGGGGCCCCCAGCCCCAG
2241 AGCCACAGACCATTACTTGTCTGTGGCCTGTCAGGAACAAGGTCACACAGCAGGAGATAAGTAACAGGTGAGCACTTGAA
2321 GTTTCATCTGTATTTATGGCTGCCCCCCATCGCTCACATTTCTGCCGTAGCTCCTCCTCCTGTCATACCAGCAGTGGCAT
2401 TAGATTCTCATAGGAGCGTGAATCCTATTGTGAACTGTGCATGCAAGGGATCTAGGTTGCACACTCCTTATGAGAATATA
2481 ATGCCTGATGATCTGTCAGTGTCTTCCATAACCCCCATATGGGACTGTCTAGTTGCAGGAAAACAAGCTCAGGGCTCCTA
2561 CTGATTCTACCTTATGGTGAGTTGTATAATTATTTCATCATGTATTACGATGTAATAATAATAGAAATACAGTGCACAGT
2641 AAATGTAATTCACTTCAGTCATCCCGAAACTATCCCCCTATCCCCACCCCGGATCTGTGGAAAAATTATCTTCCATGAAA
2721 CCAGTCCCTGGTGCCAAAAAGGTTGGGGACTGCTGCTCTAAGGAAGACTTTTTCGTGCCTTGGGGACTGCTGCTCTGAAG
2801 AAGACTCTTTCATGCTTCCTCCTTAGCTTCTGATGGCTCCTGGCAGTCCTTGGCTTGTGGCTGCATCACTTCAGTTTCTC
2881 CCTCCGTCTTCACATGGCCTTCTGTGTCTGTGTCTCGCATGGCCTTCTTCCCTGTGTCTGTGTCTTTCCATGGCCTACTT
2961 ATAAGGACCCCAGTAATTGGATTTAGGGCCTGCCCTAATCCAGTCTGATTTCATCTTAACTAACTAGATCTGCAAAGACT
3041 CTATTTCCAACTAAAGTCACATTCTGAGGTTTCAGGTAGACATGAAGTTTTGGGGGACACCACTCAACCCATTGCAGAAC
3121 CCATTAGCAGTCACTTCCCGTTCCTCAACGCCCCCTACCCCAGGGCAATCAGTAATCTACTTTCTGTCTGTTTGGATTTG
3201 TCTATTCTGAACATTTCATATAAATGGAATCATAGAATATGTGGTCTTTTGTGACTGGCTTCTTTCACTTAACATGTTTT
3281 CAAGATTTATGTTGTAGCATGAATCAGTACTTTATTACTATTTATGGAATAAAAATC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' aggaccuacGUUUAAAAu 5'
                   |||||||| 
Target 5' ttttcatcaCAAATTTTg 3'
1745 - 1762 145.00 -5.80
2
miRNA  3' aggaccuACGUUUAAAAu 5'
                 |||||:|||| 
Target 5' gacgctcTGCAAGTTTTa 3'
362 - 379 139.00 -8.60
3
miRNA  3' aggaccuacguuUAAAAu 5'
                      ||||| 
Target 5' attcctgttgttATTTTg 3'
750 - 767 100.00 -8.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31573980 17 COSMIC
COSN28771060 41 COSMIC
COSN30462192 47 COSMIC
COSN26965157 55 COSMIC
COSN30193122 55 COSMIC
COSN26965158 57 COSMIC
COSN30192292 63 COSMIC
COSN15662680 80 COSMIC
COSN30155240 91 COSMIC
COSN30107707 94 COSMIC
COSN30487587 95 COSMIC
COSN8865885 100 COSMIC
COSN20078433 102 COSMIC
COSN30190462 123 COSMIC
COSN31496920 125 COSMIC
COSN31526096 144 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1378675819 5 dbSNP
rs780700881 7 dbSNP
rs1451319365 15 dbSNP
rs1045017615 19 dbSNP
rs1048401322 20 dbSNP
rs947650968 24 dbSNP
rs368333664 27 dbSNP
rs751180473 28 dbSNP
rs188035836 29 dbSNP
rs758877887 37 dbSNP
rs183340050 41 dbSNP
rs374182720 42 dbSNP
rs1381180384 46 dbSNP
rs192344395 48 dbSNP
rs187371565 56 dbSNP
rs533140643 57 dbSNP
rs1162057234 61 dbSNP
rs1453460389 79 dbSNP
rs1196845877 80 dbSNP
rs1244917870 83 dbSNP
rs1453664445 93 dbSNP
rs1159050276 94 dbSNP
rs1461947433 97 dbSNP
rs1381895037 98 dbSNP
rs565047008 99 dbSNP
rs7206481 100 dbSNP
rs974645373 102 dbSNP
rs1406666256 106 dbSNP
rs572922387 117 dbSNP
rs1331043822 121 dbSNP
rs1448098850 123 dbSNP
rs963313434 128 dbSNP
rs559289943 144 dbSNP
rs766588225 149 dbSNP
rs542993630 150 dbSNP
rs1015937911 154 dbSNP
rs925553479 155 dbSNP
rs113851556 156 dbSNP
rs1004587152 166 dbSNP
rs978366145 170 dbSNP
rs950423256 176 dbSNP
rs1198798337 181 dbSNP
rs1179722266 182 dbSNP
rs574279384 187 dbSNP
rs1460526860 189 dbSNP
rs1208151805 190 dbSNP
rs1268240461 193 dbSNP
rs150868091 199 dbSNP
rs1002643471 213 dbSNP
rs763225156 215 dbSNP
rs905996261 217 dbSNP
rs998378269 221 dbSNP
rs1437655148 223 dbSNP
rs183315164 229 dbSNP
rs1368691070 236 dbSNP
rs1473541672 237 dbSNP
rs578189909 238 dbSNP
rs773536992 243 dbSNP
rs1044595152 259 dbSNP
rs879228084 274 dbSNP
rs1015460475 278 dbSNP
rs1446518792 279 dbSNP
rs1313813756 280 dbSNP
rs1342036391 284 dbSNP
rs1342510073 296 dbSNP
rs369291132 298 dbSNP
rs557891781 314 dbSNP
rs1318757632 315 dbSNP
rs1310893938 319 dbSNP
rs1004067103 321 dbSNP
rs888334951 323 dbSNP
rs375768086 324 dbSNP
rs893429325 333 dbSNP
rs1256529299 337 dbSNP
rs534681174 338 dbSNP
rs1053039040 339 dbSNP
rs1425214979 339 dbSNP
rs1366135719 342 dbSNP
rs11546854 349 dbSNP
rs1416682773 350 dbSNP
rs555428762 356 dbSNP
rs912583771 362 dbSNP
rs1051588861 364 dbSNP
rs1461880380 365 dbSNP
rs1303824191 369 dbSNP
rs1046466064 370 dbSNP
rs1164341288 372 dbSNP
rs1312565192 380 dbSNP
rs932781662 391 dbSNP
rs1341355047 398 dbSNP
rs921743642 400 dbSNP
rs11149842 402 dbSNP
rs1230312517 403 dbSNP
rs1052525903 406 dbSNP
rs776929435 409 dbSNP
rs1256480805 413 dbSNP
rs371954594 414 dbSNP
rs1484138470 419 dbSNP
rs191053994 426 dbSNP
rs1256376079 433 dbSNP
rs983372470 441 dbSNP
rs1195246166 442 dbSNP
rs1260355964 451 dbSNP
rs35579488 451 dbSNP
rs141586000 454 dbSNP
rs1189955544 456 dbSNP
rs1035374026 457 dbSNP
rs532985204 461 dbSNP
rs1173329455 462 dbSNP
rs1361425339 470 dbSNP
rs570282232 473 dbSNP
rs1296452435 475 dbSNP
rs986387494 477 dbSNP
rs1003020427 479 dbSNP
rs141047834 481 dbSNP
rs1313818515 483 dbSNP
rs1231828210 490 dbSNP
rs1358259174 492 dbSNP
rs12600271 496 dbSNP
rs540146964 501 dbSNP
rs1260562185 506 dbSNP
rs893311873 510 dbSNP
rs559400190 516 dbSNP
rs1053260146 520 dbSNP
rs772603034 522 dbSNP
rs999077307 525 dbSNP
rs891109478 532 dbSNP
rs1051125713 533 dbSNP
rs1270101336 540 dbSNP
rs932726485 544 dbSNP
rs1431884287 549 dbSNP
rs111839691 552 dbSNP
rs1015363962 554 dbSNP
rs771606319 557 dbSNP
rs1421868941 559 dbSNP
rs1157131025 563 dbSNP
rs542703710 577 dbSNP
rs1458481330 578 dbSNP
rs1295308950 587 dbSNP
rs1324841354 591 dbSNP
rs529281163 594 dbSNP
rs1389060252 616 dbSNP
rs1389157082 624 dbSNP
rs1377430294 625 dbSNP
rs1242035942 629 dbSNP
rs745426364 630 dbSNP
rs952526574 635 dbSNP
rs1221678953 644 dbSNP
rs1266644889 647 dbSNP
rs941805841 652 dbSNP
rs909066039 653 dbSNP
rs1430738729 654 dbSNP
rs1487810233 655 dbSNP
rs1026901108 666 dbSNP
rs1390463795 673 dbSNP
rs563840259 677 dbSNP
rs1441992270 678 dbSNP
rs929267493 683 dbSNP
rs905177911 686 dbSNP
rs1407549700 689 dbSNP
rs1474163251 695 dbSNP
rs1046853998 698 dbSNP
rs746342597 699 dbSNP
rs544049747 701 dbSNP
rs1013604992 703 dbSNP
rs892518306 708 dbSNP
rs928268448 710 dbSNP
rs1400939205 711 dbSNP
rs981168468 713 dbSNP
rs1448727718 718 dbSNP
rs1453282960 725 dbSNP
rs372622821 727 dbSNP
rs1372184308 729 dbSNP
rs1266599749 732 dbSNP
rs970204706 734 dbSNP
rs1052477095 736 dbSNP
rs972778699 744 dbSNP
rs1022634249 755 dbSNP
rs1332090640 762 dbSNP
rs936841447 767 dbSNP
rs989860598 774 dbSNP
rs1459438595 779 dbSNP
rs1277088669 790 dbSNP
rs1202895020 794 dbSNP
rs1232628997 799 dbSNP
rs1050624360 800 dbSNP
rs1338928846 801 dbSNP
rs932251174 802 dbSNP
rs1424262205 810 dbSNP
rs1467072913 813 dbSNP
rs35371198 825 dbSNP
rs957507099 825 dbSNP
rs1275550545 828 dbSNP
rs1235427677 837 dbSNP
rs1031830600 841 dbSNP
rs1304283173 842 dbSNP
rs1353172763 849 dbSNP
rs1232153003 856 dbSNP
rs1278227041 857 dbSNP
rs999495693 857 dbSNP
rs891416536 858 dbSNP
rs1030071377 859 dbSNP
rs1212681000 863 dbSNP
rs1410898286 863 dbSNP
rs578230906 865 dbSNP
rs577343678 866 dbSNP
rs996827474 868 dbSNP
rs943724638 881 dbSNP
rs147321129 882 dbSNP
rs1476864219 883 dbSNP
rs982567114 886 dbSNP
rs143885648 889 dbSNP
rs1414890769 893 dbSNP
rs1137871 897 dbSNP
rs1177883054 898 dbSNP
rs1373252828 899 dbSNP
rs537534254 903 dbSNP
rs1413747994 906 dbSNP
rs1298401796 914 dbSNP
rs1026846163 919 dbSNP
rs1341886917 919 dbSNP
rs1172655285 920 dbSNP
rs1428029120 932 dbSNP
rs941437569 936 dbSNP
rs1478689867 937 dbSNP
rs1427202326 942 dbSNP
rs887595832 944 dbSNP
rs1137872 952 dbSNP
rs1198563521 955 dbSNP
rs1472826570 957 dbSNP
rs1137873 970 dbSNP
rs749042749 973 dbSNP
rs929209613 974 dbSNP
rs1217668581 976 dbSNP
rs980693796 978 dbSNP
rs928603355 985 dbSNP
rs981773197 986 dbSNP
rs572214793 988 dbSNP
rs1024901479 991 dbSNP
rs948373619 994 dbSNP
rs777439939 995 dbSNP
rs1137874 996 dbSNP
rs1137875 997 dbSNP
rs1433844076 1003 dbSNP
rs1013967327 1005 dbSNP
rs1158935675 1005 dbSNP
rs1279529677 1006 dbSNP
rs957144119 1007 dbSNP
rs555428533 1009 dbSNP
rs535113606 1010 dbSNP
rs1301837292 1012 dbSNP
rs1241304249 1013 dbSNP
rs751602421 1013 dbSNP
rs977653054 1016 dbSNP
rs1348725400 1022 dbSNP
rs1204642821 1026 dbSNP
rs1290620128 1033 dbSNP
rs756027835 1042 dbSNP
rs1031039846 1044 dbSNP
rs1215540390 1047 dbSNP
rs1251047308 1048 dbSNP
rs1283248875 1049 dbSNP
rs569586833 1051 dbSNP
rs1029877635 1072 dbSNP
rs1229524408 1075 dbSNP
rs997526645 1076 dbSNP
rs899807676 1077 dbSNP
rs1157512974 1085 dbSNP
rs1390875871 1086 dbSNP
rs1441848802 1088 dbSNP
rs143716428 1092 dbSNP
rs1016974366 1095 dbSNP
rs904011965 1099 dbSNP
rs1394388790 1100 dbSNP
rs1447989851 1102 dbSNP
rs1311842223 1104 dbSNP
rs1334222635 1109 dbSNP
rs539313366 1114 dbSNP
rs1334400472 1115 dbSNP
rs1415724834 1116 dbSNP
rs1403243200 1117 dbSNP
rs779851608 1117 dbSNP
rs1175029774 1133 dbSNP
rs1005619166 1139 dbSNP
rs1457733858 1140 dbSNP
rs1414006604 1141 dbSNP
rs1019703190 1142 dbSNP
rs1051010531 1142 dbSNP
rs1162091826 1142 dbSNP
rs1168382754 1142 dbSNP
rs1180702454 1142 dbSNP
rs1252360546 1142 dbSNP
rs1292701569 1142 dbSNP
rs1300297344 1142 dbSNP
rs1391167236 1142 dbSNP
rs1394848552 1142 dbSNP
rs1417790504 1142 dbSNP
rs1435832422 1142 dbSNP
rs1466554711 1142 dbSNP
rs1175282322 1143 dbSNP
rs376221923 1143 dbSNP
rs932183452 1144 dbSNP
rs1252976045 1145 dbSNP
rs1337267179 1145 dbSNP
rs1040631206 1146 dbSNP
rs902058798 1146 dbSNP
rs1238334395 1148 dbSNP
rs1185188572 1152 dbSNP
rs186417849 1152 dbSNP
rs1477850467 1153 dbSNP
rs1173238819 1161 dbSNP
rs1460076010 1165 dbSNP
rs1461801408 1166 dbSNP
rs1173468337 1169 dbSNP
rs943698964 1178 dbSNP
rs1262614292 1190 dbSNP
rs908241802 1191 dbSNP
rs1209391185 1195 dbSNP
rs1341259599 1197 dbSNP
rs1383980415 1199 dbSNP
rs887227068 1201 dbSNP
rs1226438499 1203 dbSNP
rs982512989 1204 dbSNP
rs865937200 1206 dbSNP
rs551236483 1209 dbSNP
rs547218690 1215 dbSNP
rs568618134 1220 dbSNP
rs1488371352 1221 dbSNP
rs773412861 1230 dbSNP
rs527480299 1238 dbSNP
rs1200065292 1239 dbSNP
rs1397318662 1242 dbSNP
rs548705519 1255 dbSNP
rs956692350 1259 dbSNP
rs1455412448 1268 dbSNP
rs1287132088 1270 dbSNP
rs565877274 1272 dbSNP
rs1030985490 1274 dbSNP
rs866903138 1276 dbSNP
rs948668354 1277 dbSNP
rs1390822249 1278 dbSNP
rs1304025806 1279 dbSNP
rs1372989271 1283 dbSNP
rs1231804469 1285 dbSNP
rs1302242800 1287 dbSNP
rs1156834545 1292 dbSNP
rs915560885 1295 dbSNP
rs549419450 1301 dbSNP
rs1000841682 1309 dbSNP
rs529277043 1310 dbSNP
rs1054088466 1312 dbSNP
rs1388022898 1313 dbSNP
rs1414221913 1322 dbSNP
rs1255424232 1323 dbSNP
rs935745700 1337 dbSNP
rs1164729707 1345 dbSNP
rs1193317330 1350 dbSNP
rs1381162149 1356 dbSNP
rs1029086001 1364 dbSNP
rs758529356 1364 dbSNP
rs1242685573 1396 dbSNP
rs531009945 1401 dbSNP
rs1466295723 1402 dbSNP
rs1240910751 1403 dbSNP
rs977578957 1405 dbSNP
rs138601834 1407 dbSNP
rs1396515089 1408 dbSNP
rs1215680027 1413 dbSNP
rs996708647 1415 dbSNP
rs1373651999 1417 dbSNP
rs750589528 1417 dbSNP
rs367726242 1418 dbSNP
rs1315869623 1420 dbSNP
rs975676165 1424 dbSNP
rs765492431 1431 dbSNP
rs1275599770 1432 dbSNP
rs1467479689 1434 dbSNP
rs1213483223 1437 dbSNP
rs374673644 1444 dbSNP
rs1041019296 1446 dbSNP
rs1005164479 1465 dbSNP
rs113188039 1477 dbSNP
rs182696945 1478 dbSNP
rs1016940488 1480 dbSNP
rs551921312 1482 dbSNP
rs1005587893 1483 dbSNP
rs919632347 1484 dbSNP
rs1164096028 1486 dbSNP
rs1354947721 1497 dbSNP
rs951367649 1505 dbSNP
rs1025687883 1506 dbSNP
rs528454826 1508 dbSNP
rs189672628 1509 dbSNP
rs776998032 1512 dbSNP
rs947875088 1515 dbSNP
rs1046000856 1525 dbSNP
rs1274294328 1534 dbSNP
rs1012784040 1536 dbSNP
rs1384908053 1537 dbSNP
rs564764862 1540 dbSNP
rs1486093716 1541 dbSNP
rs1190191989 1543 dbSNP
rs1054308517 1544 dbSNP
rs541682639 1547 dbSNP
rs140821237 1549 dbSNP
rs761133900 1552 dbSNP
rs58719566 1553 dbSNP
rs1167982658 1562 dbSNP
rs1353580005 1565 dbSNP
rs922775428 1568 dbSNP
rs541880352 1569 dbSNP
rs1489098063 1573 dbSNP
rs1413614210 1577 dbSNP
rs1271292861 1586 dbSNP
rs772619492 1590 dbSNP
rs1220795631 1593 dbSNP
rs1364631454 1599 dbSNP
rs1490288022 1602 dbSNP
rs1290634426 1604 dbSNP
rs1205398318 1610 dbSNP
rs1213203668 1611 dbSNP
rs575962377 1612 dbSNP
rs1349013343 1614 dbSNP
rs1213356630 1616 dbSNP
rs984373260 1618 dbSNP
rs1278445217 1622 dbSNP
rs1292861215 1634 dbSNP
rs556157152 1637 dbSNP
rs1193903015 1639 dbSNP
rs954566332 1647 dbSNP
rs1242643364 1651 dbSNP
rs951335435 1657 dbSNP
rs1019132082 1661 dbSNP
rs145556001 1663 dbSNP
rs1454533281 1671 dbSNP
rs1175187151 1675 dbSNP
rs1005071163 1677 dbSNP
rs1402940137 1678 dbSNP
rs1364712676 1679 dbSNP
rs1318352411 1680 dbSNP
rs1347497884 1691 dbSNP
rs1026079003 1696 dbSNP
rs539025842 1697 dbSNP
rs1205813357 1698 dbSNP
rs1236956151 1698 dbSNP
rs1301526718 1698 dbSNP
rs1372257699 1698 dbSNP
rs1445323159 1698 dbSNP
rs567204868 1698 dbSNP
rs1213614880 1705 dbSNP
rs1352915981 1705 dbSNP
rs971259975 1705 dbSNP
rs1169844950 1706 dbSNP
rs1195204144 1708 dbSNP
rs1392903046 1709 dbSNP
rs1477469449 1710 dbSNP
rs1049346986 1712 dbSNP
rs1409590232 1719 dbSNP
rs1398442034 1720 dbSNP
rs1318327252 1723 dbSNP
rs1395777232 1727 dbSNP
rs1427949004 1730 dbSNP
rs1024135929 1734 dbSNP
rs1300561937 1745 dbSNP
rs1324239664 1751 dbSNP
rs1370567879 1753 dbSNP
rs1012670561 1754 dbSNP
rs894317071 1768 dbSNP
rs1480341586 1770 dbSNP
rs1253013478 1777 dbSNP
rs542556627 1787 dbSNP
rs1348701055 1788 dbSNP
rs773733941 1796 dbSNP
rs1000085113 1797 dbSNP
rs1249197489 1800 dbSNP
rs1203273546 1802 dbSNP
rs553642689 1803 dbSNP
rs1312257209 1806 dbSNP
rs1264970130 1807 dbSNP
rs1221638653 1808 dbSNP
rs1182157174 1809 dbSNP
rs1041797188 1813 dbSNP
rs375329364 1814 dbSNP
rs1056198033 1817 dbSNP
rs1471920645 1838 dbSNP
rs933750827 1840 dbSNP
rs1463436077 1844 dbSNP
rs935174201 1846 dbSNP
rs114885203 1847 dbSNP
rs979355622 1849 dbSNP
rs1210903465 1850 dbSNP
rs186439327 1851 dbSNP
rs568204196 1853 dbSNP
rs942806213 1855 dbSNP
rs1192163115 1860 dbSNP
rs748912857 1862 dbSNP
rs1196096263 1863 dbSNP
rs1214211112 1865 dbSNP
rs1274698909 1875 dbSNP
rs1355536766 1876 dbSNP
rs1286428852 1882 dbSNP
rs1244860785 1883 dbSNP
rs1435662687 1889 dbSNP
rs549233164 1890 dbSNP
rs984343590 1891 dbSNP
rs921983960 1893 dbSNP
rs1285517444 1895 dbSNP
rs1448041549 1898 dbSNP
rs777003463 1899 dbSNP
rs1205218715 1904 dbSNP
rs777583553 1906 dbSNP
rs918594257 1907 dbSNP
rs1169950910 1908 dbSNP
rs755940667 1909 dbSNP
rs970761727 1910 dbSNP
rs1403877279 1913 dbSNP
rs1357516600 1920 dbSNP
rs1416142725 1922 dbSNP
rs1182536381 1923 dbSNP
rs1291371968 1929 dbSNP
rs1475097959 1930 dbSNP
rs1262425877 1937 dbSNP
rs181727776 1939 dbSNP
rs1489220123 1941 dbSNP
rs990884032 1944 dbSNP
rs1286550441 1946 dbSNP
rs748005753 1947 dbSNP
rs369857709 1948 dbSNP
rs1291518211 1950 dbSNP
rs116235317 1952 dbSNP
rs1338221777 1954 dbSNP
rs1027902564 1955 dbSNP
rs995118311 1958 dbSNP
rs1383265358 1960 dbSNP
rs1000052965 1967 dbSNP
rs1162853098 1969 dbSNP
rs1195917011 1974 dbSNP
rs769054356 1975 dbSNP
rs1449228570 1978 dbSNP
rs1174575399 1983 dbSNP
rs903136121 1984 dbSNP
rs1432960769 1986 dbSNP
rs1019937836 1990 dbSNP
rs1012340338 1991 dbSNP
rs1434689373 1992 dbSNP
rs140235534 1994 dbSNP
rs564776957 1995 dbSNP
rs1362834734 1999 dbSNP
rs1227387296 2000 dbSNP
rs1303695876 2012 dbSNP
rs1231468302 2014 dbSNP
rs900838321 2025 dbSNP
rs1039448443 2026 dbSNP
rs1334792592 2034 dbSNP
rs935162470 2038 dbSNP
rs1464734614 2041 dbSNP
rs902388456 2045 dbSNP
rs1043610982 2050 dbSNP
rs1452770474 2054 dbSNP
rs1175584780 2056 dbSNP
rs946678913 2059 dbSNP
rs1390089104 2062 dbSNP
rs942438755 2063 dbSNP
rs974741334 2064 dbSNP
rs944710941 2068 dbSNP
rs888602758 2069 dbSNP
rs1452131096 2074 dbSNP
rs778873869 2076 dbSNP
rs1384768858 2077 dbSNP
rs1300152567 2078 dbSNP
rs930236437 2082 dbSNP
rs983570607 2086 dbSNP
rs757454428 2090 dbSNP
rs1444872124 2091 dbSNP
rs918801159 2092 dbSNP
rs982388990 2095 dbSNP
rs1190886226 2097 dbSNP
rs1386649339 2098 dbSNP
rs1181285754 2107 dbSNP
rs1251507342 2112 dbSNP
rs1460482531 2114 dbSNP
rs1340677374 2119 dbSNP
rs1156938508 2122 dbSNP
rs949393147 2128 dbSNP
rs1456602025 2129 dbSNP
rs1165535193 2130 dbSNP
rs1396487352 2137 dbSNP
rs1434026156 2143 dbSNP
rs1292589278 2145 dbSNP
rs916595898 2148 dbSNP
rs1248611044 2149 dbSNP
rs990853052 2156 dbSNP
rs754040031 2164 dbSNP
rs1285868190 2166 dbSNP
rs546552794 2176 dbSNP
rs973588335 2179 dbSNP
rs548062766 2180 dbSNP
rs1259956652 2181 dbSNP
rs1023647697 2185 dbSNP
rs978596805 2189 dbSNP
rs1274285762 2195 dbSNP
rs764420413 2198 dbSNP
rs1020580135 2200 dbSNP
rs998130999 2211 dbSNP
rs1251237269 2219 dbSNP
rs533287750 2226 dbSNP
rs1188656882 2228 dbSNP
rs1419859019 2230 dbSNP
rs965386595 2232 dbSNP
rs1403410024 2233 dbSNP
rs1163752527 2235 dbSNP
rs1017982486 2236 dbSNP
rs1365978431 2238 dbSNP
rs1034723139 2239 dbSNP
rs999259739 2241 dbSNP
rs761009251 2244 dbSNP
rs1414858474 2246 dbSNP
rs888232932 2247 dbSNP
rs1377545141 2248 dbSNP
rs1228130993 2252 dbSNP
rs1296686527 2259 dbSNP
rs753123963 2259 dbSNP
rs994705998 2268 dbSNP
rs1486043304 2269 dbSNP
rs767940668 2276 dbSNP
rs1294506515 2290 dbSNP
rs1047059351 2297 dbSNP
rs949691694 2301 dbSNP
rs760046743 2303 dbSNP
rs1426935887 2307 dbSNP
rs1181182687 2308 dbSNP
rs1055090858 2313 dbSNP
rs911927153 2316 dbSNP
rs1166396717 2318 dbSNP
rs1369479887 2326 dbSNP
rs936748317 2330 dbSNP
rs1161250478 2342 dbSNP
rs1446908631 2343 dbSNP
rs925335015 2344 dbSNP
rs527908678 2347 dbSNP
rs773860813 2351 dbSNP
rs1194644605 2352 dbSNP
rs1226562825 2353 dbSNP
rs1297160279 2355 dbSNP
rs967590918 2364 dbSNP
rs913077750 2366 dbSNP
rs977060138 2367 dbSNP
rs1223023633 2371 dbSNP
rs562273257 2372 dbSNP
rs1289913425 2373 dbSNP
rs1242624394 2375 dbSNP
rs1466089514 2382 dbSNP
rs965312700 2382 dbSNP
rs1017950078 2387 dbSNP
rs529482877 2409 dbSNP
rs1006527437 2410 dbSNP
rs1422506437 2411 dbSNP
rs952360795 2414 dbSNP
rs1413405320 2416 dbSNP
rs1160474038 2418 dbSNP
rs1026712971 2422 dbSNP
rs993945887 2425 dbSNP
rs1320258327 2427 dbSNP
rs897302883 2430 dbSNP
rs1046585690 2431 dbSNP
rs1407189137 2435 dbSNP
rs1344491324 2437 dbSNP
rs1014253765 2443 dbSNP
rs895434001 2449 dbSNP
rs1055309266 2455 dbSNP
rs936635292 2456 dbSNP
rs1302875177 2459 dbSNP
rs781390926 2462 dbSNP
rs970635026 2471 dbSNP
rs1247229215 2476 dbSNP
rs1468732228 2480 dbSNP
rs1023216162 2492 dbSNP
rs1244553055 2493 dbSNP
rs1477415960 2499 dbSNP
rs1158588930 2502 dbSNP
rs1414875339 2508 dbSNP
rs925303938 2514 dbSNP
rs1395745432 2517 dbSNP
rs1396684997 2518 dbSNP
rs1042836283 2524 dbSNP
rs34179388 2524 dbSNP
rs945509073 2525 dbSNP
rs1330687865 2528 dbSNP
rs1443054175 2532 dbSNP
rs1460012892 2537 dbSNP
rs1348676243 2542 dbSNP
rs913038544 2544 dbSNP
rs1267414287 2546 dbSNP
rs976651323 2548 dbSNP
rs999163407 2550 dbSNP
rs376152375 2554 dbSNP
rs911102481 2568 dbSNP
rs985393718 2569 dbSNP
rs1182041324 2576 dbSNP
rs952329557 2585 dbSNP
rs1022008324 2589 dbSNP
rs1010699570 2596 dbSNP
rs1182169991 2596 dbSNP
rs1161777642 2597 dbSNP
rs542040752 2600 dbSNP
rs576116952 2604 dbSNP
rs570540225 2608 dbSNP
rs1368857453 2609 dbSNP
rs1198340674 2612 dbSNP
rs1438625723 2614 dbSNP
rs961195009 2618 dbSNP
rs1409214078 2623 dbSNP
rs1025558864 2624 dbSNP
rs1038938920 2624 dbSNP
rs1013671043 2625 dbSNP
rs1282249324 2630 dbSNP
rs188970882 2631 dbSNP
rs1047731781 2635 dbSNP
rs762562912 2636 dbSNP
rs1001083746 2638 dbSNP
rs920640684 2658 dbSNP
rs1038231866 2664 dbSNP
rs1258857282 2665 dbSNP
rs550405458 2666 dbSNP
rs1225911666 2674 dbSNP
rs1186011335 2675 dbSNP
rs1344130587 2678 dbSNP
rs372139653 2679 dbSNP
rs530620745 2683 dbSNP
rs1170793233 2687 dbSNP
rs1388489989 2688 dbSNP
rs1429211144 2690 dbSNP
rs1313515218 2691 dbSNP
rs916091709 2693 dbSNP
rs186599183 2695 dbSNP
rs533811111 2696 dbSNP
rs1332095783 2707 dbSNP
rs181477086 2709 dbSNP
rs1227802215 2715 dbSNP
rs554785535 2728 dbSNP
rs1339579557 2731 dbSNP
rs977693005 2733 dbSNP
rs146652840 2740 dbSNP
rs1483935533 2742 dbSNP
rs1199304597 2743 dbSNP
rs570170811 2745 dbSNP
rs1176456966 2746 dbSNP
rs112295104 2747 dbSNP
rs911072812 2760 dbSNP
rs747952801 2770 dbSNP
rs1190854037 2772 dbSNP
rs1246455477 2773 dbSNP
rs1449134564 2774 dbSNP
rs1427048137 2775 dbSNP
rs1351861043 2783 dbSNP
rs1165703814 2784 dbSNP
rs1409575033 2785 dbSNP
rs370907583 2792 dbSNP
rs1172897091 2797 dbSNP
rs931244605 2801 dbSNP
rs919585115 2802 dbSNP
rs1263733682 2804 dbSNP
rs539842437 2805 dbSNP
rs762784913 2809 dbSNP
rs1248207449 2810 dbSNP
rs775391831 2811 dbSNP
rs1017832587 2814 dbSNP
rs1008745629 2817 dbSNP
rs1243775508 2819 dbSNP
rs541540022 2832 dbSNP
rs1024685697 2838 dbSNP
rs1319229279 2838 dbSNP
rs1283151618 2843 dbSNP
rs1217867715 2844 dbSNP
rs991886160 2846 dbSNP
rs1294467387 2854 dbSNP
rs768658047 2856 dbSNP
rs189707781 2858 dbSNP
rs1441834330 2860 dbSNP
rs1211089792 2866 dbSNP
rs1335104721 2866 dbSNP
rs1398376699 2868 dbSNP
rs1333454730 2870 dbSNP
rs1466157856 2871 dbSNP
rs1424282189 2872 dbSNP
rs1464716057 2874 dbSNP
rs1175321741 2876 dbSNP
rs1431342575 2878 dbSNP
rs1263044421 2882 dbSNP
rs148629839 2885 dbSNP
rs372591758 2886 dbSNP
rs369568743 2894 dbSNP
rs1431520898 2896 dbSNP
rs1001053965 2897 dbSNP
rs1198195660 2899 dbSNP
rs993496229 2903 dbSNP
rs1280978529 2904 dbSNP
rs1457744604 2904 dbSNP
rs1161259648 2907 dbSNP
rs1386259726 2908 dbSNP
rs1439598613 2909 dbSNP
rs779013367 2910 dbSNP
rs1369224180 2912 dbSNP
rs899200362 2916 dbSNP
rs7192357 2919 dbSNP
rs1336822148 2932 dbSNP
rs1350542899 2934 dbSNP
rs1009531813 2936 dbSNP
rs372661888 2962 dbSNP
rs948837572 2965 dbSNP
rs571899247 2966 dbSNP
rs1328907153 2969 dbSNP
rs1214638849 2970 dbSNP
rs754002554 2973 dbSNP
rs1040431515 2988 dbSNP
rs76741263 2990 dbSNP
rs546162900 2999 dbSNP
rs889606307 3002 dbSNP
rs1049631288 3003 dbSNP
rs1473607293 3005 dbSNP
rs1409922354 3015 dbSNP
rs938860670 3018 dbSNP
rs931212191 3020 dbSNP
rs548811942 3027 dbSNP
rs1165167148 3033 dbSNP
rs977681613 3039 dbSNP
rs973060994 3040 dbSNP
rs939677385 3041 dbSNP
rs1292568030 3043 dbSNP
rs879540224 3045 dbSNP
rs1185557725 3046 dbSNP
rs1411054894 3047 dbSNP
rs917585381 3050 dbSNP
rs1287013544 3053 dbSNP
rs914916530 3060 dbSNP
rs989181095 3064 dbSNP
rs991854979 3066 dbSNP
rs144935382 3070 dbSNP
rs1244415232 3071 dbSNP
rs926789619 3074 dbSNP
rs753573532 3079 dbSNP
rs979603759 3083 dbSNP
rs1449187639 3087 dbSNP
rs1282633267 3092 dbSNP
rs1017361539 3093 dbSNP
rs968630063 3095 dbSNP
rs1223507219 3096 dbSNP
rs1352607128 3104 dbSNP
rs557270117 3106 dbSNP
rs545448434 3110 dbSNP
rs1247585862 3111 dbSNP
rs1390337434 3113 dbSNP
rs1431123252 3114 dbSNP
rs1010247604 3121 dbSNP
rs75354439 3125 dbSNP
rs1301704260 3128 dbSNP
rs1369373216 3130 dbSNP
rs1431436141 3137 dbSNP
rs1018981066 3139 dbSNP
rs1007648017 3140 dbSNP
rs184823899 3143 dbSNP
rs1049183763 3144 dbSNP
rs539829410 3146 dbSNP
rs1016652620 3148 dbSNP
rs191591188 3149 dbSNP
rs995310349 3150 dbSNP
rs554555737 3153 dbSNP
rs1012930579 3157 dbSNP
rs1210813486 3159 dbSNP
rs894517311 3163 dbSNP
rs1482159900 3165 dbSNP
rs1442904469 3168 dbSNP
rs868724362 3171 dbSNP
rs74738315 3172 dbSNP
rs1166313140 3175 dbSNP
rs1389082670 3186 dbSNP
rs879860797 3186 dbSNP
rs903394099 3190 dbSNP
rs535147545 3195 dbSNP
rs751976600 3199 dbSNP
rs188277783 3200 dbSNP
rs1379635595 3206 dbSNP
rs766957748 3212 dbSNP
rs943055298 3217 dbSNP
rs937753995 3219 dbSNP
rs149833607 3220 dbSNP
rs1433239019 3223 dbSNP
rs1224285984 3226 dbSNP
rs987255521 3229 dbSNP
rs1356779602 3231 dbSNP
rs1311398690 3232 dbSNP
rs539907563 3241 dbSNP
rs968216244 3251 dbSNP
rs954515768 3255 dbSNP
rs184933777 3268 dbSNP
rs1364059834 3269 dbSNP
rs1268586380 3273 dbSNP
rs971908207 3274 dbSNP
rs1268337576 3284 dbSNP
rs963595029 3285 dbSNP
rs1399206444 3288 dbSNP
rs988394254 3291 dbSNP
rs1192381072 3292 dbSNP
rs1304677138 3294 dbSNP
rs1233471142 3301 dbSNP
rs1414447934 3306 dbSNP
rs1160532627 3309 dbSNP
rs966735765 3324 dbSNP
rs774854463 3327 dbSNP
rs1018950474 3335 dbSNP
rs192390924 3338 dbSNP
rs953364666 3339 dbSNP
rs749717943 3343 dbSNP
rs772845532 3344 dbSNP
rs1411728359 3347 dbSNP
rs1418041741 3348 dbSNP
rs1366972943 3349 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084069. RNA binding protein: AGO2. Condition:CLIP_emetine_SigmaAb HITS-CLIP data was present in GSM1084082. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_SigmaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_012091 | 3UTR | CAUCAAUUUUAGAACAUUUUCAUCACAAAUUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084069
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_SigmaAb
Location of target site ENST00000307921.3 | 3UTR | UCAAAAAAAAAAAAAAAAAAUUUUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084082
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep2_SigmaAb
Location of target site ENST00000307921.3 | 3UTR | AAAAAAAAAAAAAAAAUUUUUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
280 hsa-miR-4282 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057628 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT060732 RPS3 ribosomal protein S3 2 2
MIRT063371 ETNK1 ethanolamine kinase 1 2 2
MIRT066257 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT070774 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT070871 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT078056 PCTP phosphatidylcholine transfer protein 2 2
MIRT078408 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT084059 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT093537 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT096072 SFXN1 sideroflexin 1 2 2
MIRT098316 REV3L REV3 like, DNA directed polymerase zeta catalytic subunit 2 2
MIRT100493 UHRF1BP1 UHRF1 binding protein 1 2 2
MIRT102254 HBP1 HMG-box transcription factor 1 2 4
MIRT105318 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT114143 MZT1 mitotic spindle organizing protein 1 2 4
MIRT114873 DICER1 dicer 1, ribonuclease III 2 2
MIRT134683 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT137640 RCOR1 REST corepressor 1 2 2
MIRT155449 CCNT2 cyclin T2 2 4
MIRT165656 DCTN4 dynactin subunit 4 2 2
MIRT177570 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 4
MIRT188514 E2F7 E2F transcription factor 7 2 10
MIRT193019 TMOD3 tropomodulin 3 2 4
MIRT195823 GADD45A growth arrest and DNA damage inducible alpha 2 2
MIRT195885 DEPDC1 DEP domain containing 1 2 6
MIRT206029 NUP50 nucleoporin 50 2 6
MIRT212148 CLCN3 chloride voltage-gated channel 3 2 2
MIRT213999 DCP2 decapping mRNA 2 2 2
MIRT214650 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT221568 CBX3 chromobox 3 2 2
MIRT224544 ZNF623 zinc finger protein 623 2 2
MIRT227654 SET SET nuclear proto-oncogene 2 2
MIRT229992 CHIC1 cysteine rich hydrophobic domain 1 2 2
MIRT238968 QKI QKI, KH domain containing RNA binding 2 2
MIRT239825 ACTB actin beta 2 2
MIRT241084 ZXDA zinc finger, X-linked, duplicated A 2 4
MIRT244852 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT264534 TARDBP TAR DNA binding protein 2 2
MIRT271438 SKI SKI proto-oncogene 2 2
MIRT271597 ENAH ENAH, actin regulator 2 2
MIRT294332 ZNF264 zinc finger protein 264 2 2
MIRT296341 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT301715 TEF TEF, PAR bZIP transcription factor 2 2
MIRT308549 ZNF654 zinc finger protein 654 2 2
MIRT313866 DEPDC1B DEP domain containing 1B 2 2
MIRT315529 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT321066 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT343777 NUTF2 nuclear transport factor 2 2 2
MIRT359109 MAP1B microtubule associated protein 1B 2 2
MIRT397393 GOLGA3 golgin A3 2 4
MIRT400822 CPEB2 cytoplasmic polyadenylation element binding protein 2 2 2
MIRT442171 DSEL dermatan sulfate epimerase-like 2 2
MIRT442777 JAG1 jagged 1 2 2
MIRT442862 SCARF1 scavenger receptor class F member 1 2 4
MIRT442919 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT444567 TRA2B transformer 2 beta homolog 2 2
MIRT444718 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT445018 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT445853 LRRC1 leucine rich repeat containing 1 2 2
MIRT446242 HELZ helicase with zinc finger 2 2
MIRT446542 GOLGA8B golgin A8 family member B 2 2
MIRT446643 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT446948 ZMAT3 zinc finger matrin-type 3 2 4
MIRT447061 KCNAB1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 2 2
MIRT447327 ZSCAN21 zinc finger and SCAN domain containing 21 2 2
MIRT447995 CDX1 caudal type homeobox 1 2 2
MIRT448543 RHEBP1 RHEB pseudogene 1 2 6
MIRT448752 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT448772 GOLGA8A golgin A8 family member A 2 2
MIRT449342 WDR26 WD repeat domain 26 2 2
MIRT450011 SLC16A6 solute carrier family 16 member 6 2 4
MIRT450229 PCNX pecanex homolog 1 2 2
MIRT450340 MRPL17 mitochondrial ribosomal protein L17 2 4
MIRT450381 MSI2 musashi RNA binding protein 2 2 2
MIRT450759 PGGT1B protein geranylgeranyltransferase type I subunit beta 2 2
MIRT450809 NRCAM neuronal cell adhesion molecule 2 2
MIRT450947 ATAD2 ATPase family, AAA domain containing 2 2 2
MIRT459095 CCPG1 cell cycle progression 1 2 2
MIRT462428 TWISTNB TWIST neighbor 2 2
MIRT465200 TROVE2 TROVE domain family member 2 2 4
MIRT467382 SON SON DNA binding protein 2 4
MIRT468546 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT471506 PDE4D phosphodiesterase 4D 2 2
MIRT471981 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT474478 KLHL11 kelch like family member 11 2 8
MIRT475011 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT480341 C5orf51 chromosome 5 open reading frame 51 2 2
MIRT482696 TEX9 testis expressed 9 2 6
MIRT483462 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 6
MIRT485623 FAM217B family with sequence similarity 217 member B 2 2
MIRT485714 CASP16 caspase 16, pseudogene 2 8
MIRT486279 SEC23A Sec23 homolog A, coat complex II component 2 2
MIRT491000 PEBP1 phosphatidylethanolamine binding protein 1 2 4
MIRT492594 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT493365 KIF5B kinesin family member 5B 2 2
MIRT494316 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT495208 EDN3 endothelin 3 2 2
MIRT497011 TCF15 transcription factor 15 2 2
MIRT498512 FRK fyn related Src family tyrosine kinase 2 2
MIRT498778 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT501045 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502939 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504806 VHL von Hippel-Lindau tumor suppressor 2 6
MIRT505656 SHMT1 serine hydroxymethyltransferase 1 2 6
MIRT505964 RAB5C RAB5C, member RAS oncogene family 2 6
MIRT506322 OTUD4 OTU deubiquitinase 4 2 4
MIRT506803 KLHL15 kelch like family member 15 2 6
MIRT506917 KBTBD8 kelch repeat and BTB domain containing 8 2 4
MIRT507400 EMC7 ER membrane protein complex subunit 7 2 8
MIRT507471 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 6
MIRT508058 ATP13A3 ATPase 13A3 2 4
MIRT508135 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT509895 RPS23 ribosomal protein S23 2 4
MIRT510881 RAN RAN, member RAS oncogene family 2 8
MIRT513766 PEX5L peroxisomal biogenesis factor 5 like 2 4
MIRT516898 COPS8 COP9 signalosome subunit 8 2 2
MIRT518703 TIMD4 T-cell immunoglobulin and mucin domain containing 4 2 4
MIRT520429 TTPAL alpha tocopherol transfer protein like 2 6
MIRT521843 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT522116 NUDT3 nudix hydrolase 3 2 4
MIRT525467 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT525583 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT525906 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT526072 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT526232 MTRNR2L5 MT-RNR2-like 5 2 4
MIRT526455 FAM71F2 family with sequence similarity 71 member F2 2 4
MIRT526515 POU5F1B POU class 5 homeobox 1B 2 2
MIRT528032 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT528422 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT528995 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 4
MIRT529311 ATRNL1 attractin like 1 2 2
MIRT529376 SKP1 S-phase kinase associated protein 1 2 4
MIRT530015 SRRM1 serine and arginine repetitive matrix 1 2 2
MIRT530089 FMN2 formin 2 2 2
MIRT530942 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 2
MIRT531229 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT533088 YTHDF3 YTH N6-methyladenosine RNA binding protein 3 2 2
MIRT533299 USP46 ubiquitin specific peptidase 46 2 2
MIRT533318 UNKL unkempt family like zinc finger 2 2
MIRT533721 TMEM30A transmembrane protein 30A 2 2
MIRT534096 AZF1 azoospermia factor 1 2 2
MIRT534188 SLC7A11 solute carrier family 7 member 11 2 2
MIRT534493 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT536077 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT536242 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT537524 FAM104A family with sequence similarity 104 member A 2 2
MIRT538088 DGKH diacylglycerol kinase eta 2 2
MIRT538475 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT538853 BTG1 BTG anti-proliferation factor 1 2 4
MIRT539075 GDNF glial cell derived neurotrophic factor 2 2
MIRT539480 ACVR2B activin A receptor type 2B 2 4
MIRT540210 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT541940 TSPAN2 tetraspanin 2 2 2
MIRT543812 COCH cochlin 2 2
MIRT545120 PDZRN4 PDZ domain containing ring finger 4 2 2
MIRT545571 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT545989 XKR4 XK related 4 2 2
MIRT547213 PANK3 pantothenate kinase 3 2 4
MIRT547740 KIAA1468 KIAA1468 2 2
MIRT548022 GRB2 growth factor receptor bound protein 2 2 4
MIRT548032 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548102 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 4
MIRT548217 FKBP1A FK506 binding protein 1A 2 2
MIRT548588 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT548953 CDC27 cell division cycle 27 2 2
MIRT549072 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT550368 INCENP inner centromere protein 2 6
MIRT550546 MYZAP myocardial zonula adherens protein 2 2
MIRT551491 TMEM192 transmembrane protein 192 2 4
MIRT553078 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT554104 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT555127 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT555477 POC1B-GALNT4 POC1B-GALNT4 readthrough 2 2
MIRT555978 NPTN neuroplastin 2 2
MIRT557011 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557706 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 2 2
MIRT558333 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558488 DBN1 drebrin 1 2 2
MIRT559942 ZNF567 zinc finger protein 567 2 2
MIRT561127 ATP2B1 ATPase plasma membrane Ca2+ transporting 1 2 2
MIRT561791 PAWR pro-apoptotic WT1 regulator 2 2
MIRT562438 EEF2 eukaryotic translation elongation factor 2 2 2
MIRT563102 PABPC4L poly(A) binding protein cytoplasmic 4 like 2 2
MIRT563212 ZNF813 zinc finger protein 813 2 2
MIRT563426 KIF3A kinesin family member 3A 2 2
MIRT563473 SPIN4 spindlin family member 4 2 2
MIRT564015 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT564117 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT564223 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT564503 CACNG1 calcium voltage-gated channel auxiliary subunit gamma 1 2 2
MIRT564515 DUSP3 dual specificity phosphatase 3 2 2
MIRT564811 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT565265 TPD52 tumor protein D52 2 2
MIRT566012 RHOB ras homolog family member B 2 2
MIRT566216 PTMA prothymosin, alpha 2 2
MIRT566638 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT566821 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT566948 LEPROT leptin receptor overlapping transcript 2 2
MIRT567290 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT567895 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT568731 MTRNR2L3 MT-RNR2-like 3 2 2
MIRT571263 ZNF239 zinc finger protein 239 2 2
MIRT572593 EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 2 2
MIRT573827 TGOLN2 trans-golgi network protein 2 2 2
MIRT576391 Fhl2 four and a half LIM domains 2 2 2
MIRT609901 SMS spermine synthase 2 2
MIRT613710 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 2
MIRT614406 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT615042 DCX doublecortin 2 2
MIRT617514 C5orf45 MRN complex interacting protein 2 2
MIRT619476 PRDM10 PR/SET domain 10 2 2
MIRT620349 TLN1 talin 1 2 2
MIRT620910 PLA2G7 phospholipase A2 group VII 2 2
MIRT622131 SP4 Sp4 transcription factor 2 2
MIRT622955 OTUD7B OTU deubiquitinase 7B 2 2
MIRT623351 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT623619 INTU inturned planar cell polarity protein 2 2
MIRT624409 CCDC171 coiled-coil domain containing 171 2 2
MIRT625171 CCS copper chaperone for superoxide dismutase 2 2
MIRT625685 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT625875 ALDH18A1 aldehyde dehydrogenase 18 family member A1 2 2
MIRT626002 FAM107A family with sequence similarity 107 member A 2 2
MIRT626872 HRH4 histamine receptor H4 2 4
MIRT628220 FKBP9 FK506 binding protein 9 2 2
MIRT628265 DIO2 iodothyronine deiodinase 2 2 2
MIRT628402 C8orf37 chromosome 8 open reading frame 37 2 2
MIRT630564 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT631577 RASSF9 Ras association domain family member 9 2 2
MIRT635730 CCDC58 coiled-coil domain containing 58 2 2
MIRT636224 SLC8A1 solute carrier family 8 member A1 2 2
MIRT636613 CLIC5 chloride intracellular channel 5 2 2
MIRT638899 CDK9 cyclin dependent kinase 9 2 2
MIRT640167 ATXN7L1 ataxin 7 like 1 2 2
MIRT642070 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT643034 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 2 2
MIRT644572 SPOP speckle type BTB/POZ protein 2 2
MIRT644954 IFNB1 interferon beta 1 2 2
MIRT645948 TTF2 transcription termination factor 2 2 2
MIRT646440 XRCC2 X-ray repair cross complementing 2 2 2
MIRT647896 EPN2 epsin 2 2 2
MIRT648276 ZNF582 zinc finger protein 582 2 2
MIRT649381 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 2 2
MIRT650254 CD68 CD68 molecule 2 2
MIRT650333 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT651707 VMP1 vacuole membrane protein 1 2 2
MIRT651774 VASP vasodilator stimulated phosphoprotein 2 2
MIRT653144 SRPK2 SRSF protein kinase 2 2 2
MIRT654112 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654161 RORB RAR related orphan receptor B 2 2
MIRT655716 MLF2 myeloid leukemia factor 2 2 2
MIRT657476 HDAC4 histone deacetylase 4 2 2
MIRT658095 FOXO1 forkhead box O1 2 2
MIRT658860 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT658988 DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 2 2
MIRT660767 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT661622 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661694 TFDP2 transcription factor Dp-2 2 2
MIRT662208 PLA2G4E phospholipase A2 group IVE 2 2
MIRT662443 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664422 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT687505 NECAB1 N-terminal EF-hand calcium binding protein 1 2 2
MIRT689910 SOD2 superoxide dismutase 2 2 2
MIRT690781 PLA2G2C phospholipase A2 group IIC 2 2
MIRT698488 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT699685 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT700926 PDS5A PDS5 cohesin associated factor A 2 2
MIRT702258 LMNB1 lamin B1 2 2
MIRT703166 GPR137C G protein-coupled receptor 137C 2 2
MIRT703242 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT704737 CENPQ centromere protein Q 2 2
MIRT707310 GLRX2 glutaredoxin 2 2 2
MIRT710021 KCNQ5 potassium voltage-gated channel subfamily Q member 5 2 2
MIRT712212 SCOC short coiled-coil protein 2 2
MIRT714742 SETBP1 SET binding protein 1 2 2
MIRT718268 ZNF749 zinc finger protein 749 2 2
MIRT720553 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT722248 RBM41 RNA binding motif protein 41 2 2
MIRT723767 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT723977 KIAA0146 scaffolding protein involved in DNA repair 1 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4282 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)

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