pre-miRNA Information
pre-miRNA hsa-mir-4419b   
Genomic Coordinates chr12: 128244506 - 128244573
Description Homo sapiens miR-4419b stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4419b
Sequence 42| GAGGCUGAAGGAAGAUGG |59
Evidence Experimental
Experiments Illumina
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol BROX   
Synonyms C1orf58
Description BRO1 domain and CAAX motif containing
Transcript NM_144695   
Expression
Putative miRNA Targets on BROX
3'UTR of BROX
(miRNA target sites are highlighted)
>BROX|NM_144695|3'UTR
   1 AATACAACTTGCACTTAGAATTTCTCTAGCAGTAAATAAGATAAACCACAGAATTTCAGTTCTTATTTCTCAAAATGATT
  81 TCTCTGAAGCTTGTAGAATAACTATTATATTCAGAGGGTTATCTGCCTTCAGCTTACTTGTTCTTAATTTTTAATACAGC
 161 GGAGATGTTTCTTGCTTTGTTTTCAGACTCTCCTTTTTAATCAGGACAACATTTGAAAGATTTTATTGTGCCTCTAAAGG
 241 GTATATTTGGGGGTTGGGTCTTTTTGTTAAACTCTGGATAGTAATAAGTTTCAGGTCAGTATAGGCCCGAATCATGTGGT
 321 TTCAGGTATGTTTTTCTTTTTTCTTTTTCTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTGAGGTGGAGTCTCCCTC
 401 TGTTGCCCAGGCTGGAGTGCAGTGGCATGATCTCGGCTCACTGCAACCCTCCACCTCCTGAATTAAAGTGATTCTCCTGC
 481 CTCAGCCTCCCGAGTAGCTGGGATTACAGGCACGCACCACTACACCCAGATAATTTTTGTATTTTTAGTAGAGACGTGAT
 561 TTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGCTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATT
 641 ACAGGCGTGATCCACTGCACCTGGCCTCAGGTATGTTTTTCTATCTACACACAAAAAGTTTATTTTCCTTCCTCTTATTT
 721 GATATCAGAAGAATGACAGGAATCAGTTTTTAACAGAGATAGTTTTTCCGTTTCTCCATTGTGTTAATCAGAGCGCAGAC
 801 TTACATTCTCAGTCATTTATCTTTTCTGGTGGAGAATAAAAAGTCACTTATAGTTAAAGATCAGAAAATTATCACACCAA
 881 ATCCATTACATATGTTAGAATCAATAATTTACTCAAAAATCAGCTTTTATAGGTATGTTGGCACCTTATCCAAGAACTTA
 961 TCCCTGTTCCAGTACCCCTGTGCTTCATTCAGTATCAGTAACCCTGCAATGATTTTTACAAATATCTTTTTCTAGTGGGT
1041 TTTTTACTTAGAGGAAAGAACTTTGTAATAGCTCTTAATGTTTATATATAAGAGAAGACAGAATGGAAAATGTTTTTTGA
1121 AGTCAAATATTGCATGATGTAAAGAAAAAACTTTAAACTTAAATGAGTAGGTTGTCCTGAATTACACTGGTAACTCTCTA
1201 CTTCTTTATTAAAGAAGTTATAGTAAGATGCCTTTGTTACCTGATTTCAGTGTACATTGTTTTTATGTGGTTTTCTGATA
1281 ATGTCCTGTCAGAATTGTATTGGTTTAGGCCAAAGGCCATAGCAAAAACATAGAGAACAAATATGATCTTAAAAATAGAT
1361 TGTAACATTTTAAACAATTAGTTTAGTAATTTGGGAAATAGTGGATGCATAATACTTTAACAGAAGTCACACATCTGTAG
1441 GTTTATCTTTTGATTATTCTCCTGAGGCATTAGATAGTTTTTCTATTATAAGTGACAGATTGACTCACTTAATATAAATA
1521 AGTAGCATACACTAAAAGCTTACTATGTGCCAGATACTGTGCTGGACACTTACATAGATAAGCCATTGAATCCACACAGC
1601 AGCCCTGTAAGAAATAAGTAAAATCTGCATAAAGTGTTGAAATAGGAATATACATTTCATTATGAAAAATGAATAGATTA
1681 TGCCTATCTGAATCAATATTGCATTCAAATAAGTGATTACTTAAATCATATATCATAGTTTACACTCCTTAAAAAAAGGT
1761 ACATAAATTCAGTGAGGTTTTTTTCTTAACATACAGAAGTACTAAATACTGCTTGCAGTATAATATTGATATTGGAAGCT
1841 GCAGTTTCCAGAATAAGTGGAGTAATAACTAAACAGACATTTAATTTTATTTCAATATCTATGGAAAAAACACTTATTAA
1921 ATCTCCCTGTATTTTATGTTGTCTTTATTACAGAATCACTTGTCTGTTTGTTGTGTGCCACTTACTGACAAAACTTTAAA
2001 CAGTACTTGATGCCAGCTCTCTACTCTGTGGCTGTGGGACCTGTTTCTTTTAGGTACTTGTGCTTATTAATCTACTTACT
2081 AAATTTTCACATTGACATTTTTGGGGATGATACTACCATATACGAAATGGAAAATGTAATATGCTCAGTGCTTCTGTAAA
2161 ATGCAGCAATACTGGTATTACTTTACATCAGTAGGCATCTTTGACATGAGCATATAAATATTTTGTTGACTCAGCAAAGG
2241 TGACACTTTGTGACTAAAGTATCCCATTATATATAATGTTTTTTGAAATGTTGGAAATTTTGGGGAATTATCAAATGTAT
2321 AGAAGTTGCATGAAGGTTATAGAGAGGTGTAACTGTTTGTTAACTATTACATGGATTTCATACTAGGCAGTGACAACTAA
2401 CATGTTACTTCAACTAAAAGTGTATAATGGGTTGTCTTTTTATTTATGAAAATAAAAGTAATTTTACTTACAATTTCATT
2481 GA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ggUAGAAGGAAGUCGGAg 5'
            |||| ||||||||:| 
Target 5' ttATCTGCCTTCAGCTTa 3'
119 - 136 156.00 -19.30
2
miRNA  3' ggUAGAAGGA---AGUCGGAg 5'
            ||: ||||   ||||||| 
Target 5' tgATTCTCCTGCCTCAGCCTc 3'
469 - 489 156.00 -17.50
3
miRNA  3' ggUAGAAGGA------AGUCGGAg 5'
            | :|| ||      |||||:| 
Target 5' atAATTTACTCAAAAATCAGCTTt 3'
904 - 927 126.00 -7.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31484810 27 COSMIC
COSN30122843 47 COSMIC
COSN31578169 52 COSMIC
COSN1433290 105 COSMIC
COSN30105476 162 COSMIC
COSN7205413 307 COSMIC
COSN27279862 350 COSMIC
COSN8435322 552 COSMIC
COSN17726000 701 COSMIC
COSN23347935 706 COSMIC
COSN17317737 781 COSMIC
COSN6024668 1056 COSMIC
COSN16933278 1083 COSMIC
COSN1098498 1410 COSMIC
COSN7205415 1413 COSMIC
COSN17913118 2068 COSMIC
COSN5166538 2095 COSMIC
COSN21526687 2354 COSMIC
COSN22885807 2359 COSMIC
COSN30353018 2428 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs991300043 3 dbSNP
rs1181677260 6 dbSNP
rs1362449064 8 dbSNP
rs770846086 14 dbSNP
rs776603337 19 dbSNP
rs373931794 22 dbSNP
rs761459323 22 dbSNP
rs759292345 25 dbSNP
rs112469321 26 dbSNP
rs1215134893 32 dbSNP
rs1459995980 33 dbSNP
rs199674355 39 dbSNP
rs1299945469 52 dbSNP
rs183063133 57 dbSNP
rs377331553 60 dbSNP
rs558623443 67 dbSNP
rs1021970446 75 dbSNP
rs917216982 75 dbSNP
rs1207996858 76 dbSNP
rs574545249 83 dbSNP
rs968659907 86 dbSNP
rs977532942 90 dbSNP
rs1227263104 103 dbSNP
rs778371692 105 dbSNP
rs1294781235 114 dbSNP
rs769787681 118 dbSNP
rs1380415492 119 dbSNP
rs987231164 126 dbSNP
rs910277599 132 dbSNP
rs542338907 139 dbSNP
rs1223048865 142 dbSNP
rs930461067 161 dbSNP
rs1409794559 162 dbSNP
rs1047630095 163 dbSNP
rs1424591437 169 dbSNP
rs749708967 193 dbSNP
rs1039839019 195 dbSNP
rs898776376 208 dbSNP
rs563617270 211 dbSNP
rs931579061 212 dbSNP
rs368882953 217 dbSNP
rs1207991000 222 dbSNP
rs1326487326 231 dbSNP
rs1009252243 235 dbSNP
rs531001262 237 dbSNP
rs12043288 239 dbSNP
rs1394670032 248 dbSNP
rs1057150054 268 dbSNP
rs74943767 277 dbSNP
rs1321840787 281 dbSNP
rs1480567039 304 dbSNP
rs1197637579 306 dbSNP
rs77420252 309 dbSNP
rs1021457671 310 dbSNP
rs969061375 315 dbSNP
rs967807890 316 dbSNP
rs998767144 320 dbSNP
rs1430121396 325 dbSNP
rs1248360172 326 dbSNP
rs1031562946 327 dbSNP
rs1463467693 329 dbSNP
rs1417704549 331 dbSNP
rs954377064 331 dbSNP
rs1304717766 337 dbSNP
rs796252390 337 dbSNP
rs1365905757 340 dbSNP
rs987093903 340 dbSNP
rs1263316140 342 dbSNP
rs1229103978 343 dbSNP
rs372700180 343 dbSNP
rs1298763900 344 dbSNP
rs369101624 344 dbSNP
rs1386432387 346 dbSNP
rs1228362405 350 dbSNP
rs1390058757 350 dbSNP
rs1491486733 350 dbSNP
rs372818118 350 dbSNP
rs796814438 350 dbSNP
rs1491319826 351 dbSNP
rs1299419414 352 dbSNP
rs1463702203 353 dbSNP
rs1337635728 354 dbSNP
rs1410429216 356 dbSNP
rs1239820352 357 dbSNP
rs1447648977 357 dbSNP
rs1279553325 359 dbSNP
rs1352126684 360 dbSNP
rs1225292816 361 dbSNP
rs1396830221 361 dbSNP
rs868117877 362 dbSNP
rs1204871063 363 dbSNP
rs1275881047 363 dbSNP
rs1340407236 363 dbSNP
rs1450568308 363 dbSNP
rs200745349 363 dbSNP
rs550811790 363 dbSNP
rs1292965511 365 dbSNP
rs1234547059 367 dbSNP
rs1490276945 368 dbSNP
rs1032282296 369 dbSNP
rs1264802417 370 dbSNP
rs1159251965 371 dbSNP
rs1307592223 373 dbSNP
rs1427588501 374 dbSNP
rs1181901929 375 dbSNP
rs1379678670 376 dbSNP
rs1437768260 377 dbSNP
rs1165325121 380 dbSNP
rs1385672519 382 dbSNP
rs201432516 384 dbSNP
rs1456007543 385 dbSNP
rs1292041816 386 dbSNP
rs1398898650 387 dbSNP
rs1392090562 388 dbSNP
rs1183347726 389 dbSNP
rs1472747283 391 dbSNP
rs1250629935 395 dbSNP
rs1179483833 399 dbSNP
rs1330774898 401 dbSNP
rs1201571499 402 dbSNP
rs1344920217 416 dbSNP
rs1374672345 420 dbSNP
rs1230325148 435 dbSNP
rs149847057 436 dbSNP
rs956252711 444 dbSNP
rs1316284304 447 dbSNP
rs1342091617 461 dbSNP
rs562756493 466 dbSNP
rs1413900964 468 dbSNP
rs1399962242 474 dbSNP
rs1160168924 477 dbSNP
rs1457313536 490 dbSNP
rs964485463 492 dbSNP
rs1179633066 493 dbSNP
rs976025403 498 dbSNP
rs920093440 499 dbSNP
rs931445050 509 dbSNP
rs776202187 514 dbSNP
rs529449596 515 dbSNP
rs1442149208 521 dbSNP
rs970008200 525 dbSNP
rs980138683 527 dbSNP
rs1047322136 533 dbSNP
rs551118190 547 dbSNP
rs920670063 550 dbSNP
rs144691720 552 dbSNP
rs908760111 556 dbSNP
rs759215918 557 dbSNP
rs199864686 561 dbSNP
rs930743993 561 dbSNP
rs1237040138 564 dbSNP
rs1447030170 568 dbSNP
rs1047576913 569 dbSNP
rs907676672 576 dbSNP
rs1435696719 578 dbSNP
rs1185373580 580 dbSNP
rs938694256 587 dbSNP
rs569673315 588 dbSNP
rs867052447 592 dbSNP
rs1057054356 595 dbSNP
rs1414088459 595 dbSNP
rs766952319 601 dbSNP
rs1472695392 609 dbSNP
rs1367040165 614 dbSNP
rs1043404502 620 dbSNP
rs28433094 631 dbSNP
rs537095733 645 dbSNP
rs1043308004 646 dbSNP
rs904366898 647 dbSNP
rs999210585 648 dbSNP
rs1182247352 651 dbSNP
rs998664248 656 dbSNP
rs1354019894 660 dbSNP
rs370507125 665 dbSNP
rs1299508528 669 dbSNP
rs1229138875 672 dbSNP
rs1031594115 684 dbSNP
rs1318396516 686 dbSNP
rs954575867 694 dbSNP
rs1008601344 696 dbSNP
rs1338006767 707 dbSNP
rs1322504966 708 dbSNP
rs1379077503 713 dbSNP
rs1403218944 715 dbSNP
rs1394713270 723 dbSNP
rs1383817406 726 dbSNP
rs373627654 735 dbSNP
rs1450698730 741 dbSNP
rs150472185 755 dbSNP
rs370361841 755 dbSNP
rs1308385418 760 dbSNP
rs752189472 764 dbSNP
rs761344478 770 dbSNP
rs1256979189 771 dbSNP
rs970332141 775 dbSNP
rs531564864 777 dbSNP
rs964841204 779 dbSNP
rs973190889 789 dbSNP
rs762342610 790 dbSNP
rs1315583347 792 dbSNP
rs980086407 792 dbSNP
rs577055605 795 dbSNP
rs1220831490 796 dbSNP
rs1243733276 796 dbSNP
rs1367758609 815 dbSNP
rs1482891503 825 dbSNP
rs982881379 830 dbSNP
rs1174209896 835 dbSNP
rs534964862 841 dbSNP
rs144908838 846 dbSNP
rs1057086593 848 dbSNP
rs944496833 848 dbSNP
rs758804085 851 dbSNP
rs535904523 852 dbSNP
rs1426045090 857 dbSNP
rs780464102 863 dbSNP
rs921841967 864 dbSNP
rs1471036412 871 dbSNP
rs1183119787 878 dbSNP
rs574612184 882 dbSNP
rs1272188664 886 dbSNP
rs1212197825 889 dbSNP
rs948698466 891 dbSNP
rs370031057 905 dbSNP
rs1277368902 915 dbSNP
rs564614030 921 dbSNP
rs1216978297 930 dbSNP
rs1351725373 932 dbSNP
rs1043163583 937 dbSNP
rs1288621058 939 dbSNP
rs1408787237 945 dbSNP
rs1043645412 954 dbSNP
rs1358590403 958 dbSNP
rs375390760 959 dbSNP
rs903501662 962 dbSNP
rs999157426 967 dbSNP
rs1464988340 976 dbSNP
rs1052576940 979 dbSNP
rs896276669 991 dbSNP
rs76782851 992 dbSNP
rs1248230101 997 dbSNP
rs906095420 998 dbSNP
rs934488120 1001 dbSNP
rs1399763137 1010 dbSNP
rs1001763014 1012 dbSNP
rs1277226955 1021 dbSNP
rs1268182318 1025 dbSNP
rs1227443213 1026 dbSNP
rs1326625099 1027 dbSNP
rs1027920549 1035 dbSNP
rs1398163019 1039 dbSNP
rs376200156 1040 dbSNP
rs1380301336 1048 dbSNP
rs1224904938 1050 dbSNP
rs557094497 1066 dbSNP
rs1278715840 1069 dbSNP
rs575340449 1070 dbSNP
rs1390981347 1071 dbSNP
rs149032890 1088 dbSNP
rs1321289586 1089 dbSNP
rs1456965271 1092 dbSNP
rs1362290690 1098 dbSNP
rs755170105 1099 dbSNP
rs951991045 1109 dbSNP
rs1424208209 1113 dbSNP
rs983472717 1125 dbSNP
rs1015419026 1135 dbSNP
rs890416138 1138 dbSNP
rs1248170623 1140 dbSNP
rs966185878 1144 dbSNP
rs1008801004 1151 dbSNP
rs976306186 1155 dbSNP
rs1245008767 1161 dbSNP
rs1266876124 1161 dbSNP
rs1322753244 1164 dbSNP
rs1312421653 1186 dbSNP
rs1244510869 1188 dbSNP
rs1367951964 1191 dbSNP
rs1395639364 1192 dbSNP
rs1017909614 1201 dbSNP
rs1434466545 1201 dbSNP
rs921747717 1208 dbSNP
rs900184240 1219 dbSNP
rs931831782 1222 dbSNP
rs979285260 1224 dbSNP
rs925207412 1225 dbSNP
rs994873195 1226 dbSNP
rs1261377461 1228 dbSNP
rs1451036442 1230 dbSNP
rs1027415169 1232 dbSNP
rs1390717391 1239 dbSNP
rs1187808318 1249 dbSNP
rs1426243552 1254 dbSNP
rs1481549589 1269 dbSNP
rs1200325172 1271 dbSNP
rs950513586 1283 dbSNP
rs781135963 1289 dbSNP
rs1487954058 1297 dbSNP
rs564184215 1304 dbSNP
rs1291576085 1306 dbSNP
rs1431467030 1320 dbSNP
rs748194201 1324 dbSNP
rs533277922 1329 dbSNP
rs916122895 1331 dbSNP
rs370873910 1332 dbSNP
rs1324809791 1334 dbSNP
rs979135549 1338 dbSNP
rs1303458810 1340 dbSNP
rs1387628975 1352 dbSNP
rs1367186387 1362 dbSNP
rs1367769728 1364 dbSNP
rs1301455722 1371 dbSNP
rs926091928 1373 dbSNP
rs1370888450 1376 dbSNP
rs1406419778 1376 dbSNP
rs1167940540 1384 dbSNP
rs1275024746 1400 dbSNP
rs1366349793 1406 dbSNP
rs1216937802 1424 dbSNP
rs777903254 1429 dbSNP
rs1001710497 1435 dbSNP
rs1309141302 1442 dbSNP
rs1432029242 1449 dbSNP
rs1354312730 1451 dbSNP
rs1183840691 1459 dbSNP
rs1215735752 1459 dbSNP
rs934729727 1462 dbSNP
rs1484252595 1465 dbSNP
rs547041632 1471 dbSNP
rs1195770692 1472 dbSNP
rs1338013426 1478 dbSNP
rs1490768082 1486 dbSNP
rs1257893073 1490 dbSNP
rs1234062812 1509 dbSNP
rs1322864611 1511 dbSNP
rs547618745 1516 dbSNP
rs1281642141 1530 dbSNP
rs1027868281 1532 dbSNP
rs1350928533 1535 dbSNP
rs75081222 1539 dbSNP
rs890280238 1546 dbSNP
rs1005282918 1548 dbSNP
rs944499286 1558 dbSNP
rs1404280065 1566 dbSNP
rs1014952442 1567 dbSNP
rs1246325564 1573 dbSNP
rs1487570814 1578 dbSNP
rs966461068 1584 dbSNP
rs1038953802 1594 dbSNP
rs900384413 1595 dbSNP
rs1472695689 1604 dbSNP
rs1253070733 1609 dbSNP
rs1181519275 1624 dbSNP
rs1436365503 1626 dbSNP
rs1029043314 1641 dbSNP
rs1391549750 1649 dbSNP
rs1258916528 1654 dbSNP
rs796237782 1656 dbSNP
rs1322985541 1681 dbSNP
rs1261305428 1685 dbSNP
rs994548002 1693 dbSNP
rs1230542053 1698 dbSNP
rs1027733171 1702 dbSNP
rs1279131768 1710 dbSNP
rs1236611949 1713 dbSNP
rs1380932263 1714 dbSNP
rs1334768178 1723 dbSNP
rs1451796372 1729 dbSNP
rs143706441 1730 dbSNP
rs1157336177 1736 dbSNP
rs1387492307 1741 dbSNP
rs1457496928 1744 dbSNP
rs1425663943 1745 dbSNP
rs1410789987 1750 dbSNP
rs1156407529 1751 dbSNP
rs1468944864 1751 dbSNP
rs953178602 1755 dbSNP
rs979275158 1756 dbSNP
rs886214844 1759 dbSNP
rs1461258261 1760 dbSNP
rs200032897 1770 dbSNP
rs1210682052 1776 dbSNP
rs1465353202 1778 dbSNP
rs935291471 1785 dbSNP
rs1348935400 1791 dbSNP
rs1203567781 1793 dbSNP
rs1004579100 1794 dbSNP
rs770691516 1795 dbSNP
rs1284541907 1796 dbSNP
rs1245241743 1798 dbSNP
rs540556841 1806 dbSNP
rs1376910488 1826 dbSNP
rs548646547 1828 dbSNP
rs1344043475 1829 dbSNP
rs1239376312 1832 dbSNP
rs17532981 1849 dbSNP
rs1393414090 1851 dbSNP
rs1361395011 1853 dbSNP
rs1164183272 1854 dbSNP
rs759119609 1858 dbSNP
rs1383926537 1889 dbSNP
rs186724507 1895 dbSNP
rs1450195732 1899 dbSNP
rs1023222923 1902 dbSNP
rs1213968984 1913 dbSNP
rs115533158 1914 dbSNP
rs563057911 1918 dbSNP
rs1356923174 1928 dbSNP
rs1049290783 1932 dbSNP
rs925927444 1958 dbSNP
rs934760986 1960 dbSNP
rs1005155938 1965 dbSNP
rs778975948 1965 dbSNP
rs988913067 1972 dbSNP
rs1037037446 1983 dbSNP
rs751389309 1988 dbSNP
rs558013599 2001 dbSNP
rs1331338409 2027 dbSNP
rs1177367044 2029 dbSNP
rs1424455215 2033 dbSNP
rs530664313 2036 dbSNP
rs374742641 2045 dbSNP
rs901811622 2048 dbSNP
rs954657984 2048 dbSNP
rs190390948 2053 dbSNP
rs774885595 2056 dbSNP
rs114163358 2057 dbSNP
rs1184843154 2058 dbSNP
rs944531877 2064 dbSNP
rs143101764 2068 dbSNP
rs1163026844 2073 dbSNP
rs1489812384 2075 dbSNP
rs921912012 2082 dbSNP
rs1205866330 2089 dbSNP
rs1306832028 2115 dbSNP
rs1032160453 2124 dbSNP
rs146698601 2125 dbSNP
rs1345054838 2129 dbSNP
rs988046285 2139 dbSNP
rs752924089 2143 dbSNP
rs1048750514 2145 dbSNP
rs1172036651 2162 dbSNP
rs1402699706 2165 dbSNP
rs886121589 2176 dbSNP
rs1310238159 2178 dbSNP
rs747092056 2178 dbSNP
rs756236694 2178 dbSNP
rs1354481365 2185 dbSNP
rs1168872103 2192 dbSNP
rs1416272451 2193 dbSNP
rs1004479117 2194 dbSNP
rs554901438 2208 dbSNP
rs1176029413 2225 dbSNP
rs896205175 2226 dbSNP
rs1445378680 2240 dbSNP
rs1177582665 2241 dbSNP
rs372233473 2246 dbSNP
rs1014456845 2247 dbSNP
rs980471922 2250 dbSNP
rs1212085569 2252 dbSNP
rs546543102 2256 dbSNP
rs1023551178 2270 dbSNP
rs1221381554 2274 dbSNP
rs370086960 2282 dbSNP
rs1330760540 2296 dbSNP
rs931078293 2309 dbSNP
rs1349282958 2315 dbSNP
rs568287651 2316 dbSNP
rs763435923 2318 dbSNP
rs557937789 2323 dbSNP
rs909356521 2331 dbSNP
rs1450775743 2337 dbSNP
rs556890075 2339 dbSNP
rs1033234068 2347 dbSNP
rs751883482 2350 dbSNP
rs988777360 2353 dbSNP
rs1468242452 2354 dbSNP
rs769678858 2354 dbSNP
rs1160047893 2356 dbSNP
rs1405499987 2360 dbSNP
rs1317416536 2367 dbSNP
rs1196825087 2372 dbSNP
rs1265602447 2375 dbSNP
rs17163466 2391 dbSNP
rs1187378624 2395 dbSNP
rs1465809302 2402 dbSNP
rs1236119003 2403 dbSNP
rs1214572116 2413 dbSNP
rs1476566940 2417 dbSNP
rs966116813 2421 dbSNP
rs987811209 2422 dbSNP
rs1230587577 2425 dbSNP
rs1384198008 2433 dbSNP
rs1036578610 2437 dbSNP
rs1195465846 2437 dbSNP
rs867713138 2438 dbSNP
rs1390859724 2447 dbSNP
rs1289715919 2453 dbSNP
rs1423861403 2453 dbSNP
rs1464710666 2467 dbSNP
rs1167904984 2470 dbSNP
rs767726218 2472 dbSNP
rs1403631585 2474 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084040. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep1 HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb HITS-CLIP data was present in GSM1084079. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_AbnovaAb HITS-CLIP data was present in GSM1084081. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_SantaCruzAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084040
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep1
Location of target site ENST00000537020.1 | 3UTR | AAUUAAAGUGAUUCUCCUGCCUCAGCCUCCCGAGUAGCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000537020.1 | 3UTR | AAUUAAAGUGAUUCUCCUGCCUCAGCCUCCCGAGUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000537020.1 | 3UTR | AUUAAAGUGAUUCUCCUGCCUCAGCCUCCCGAGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1084079
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_AbnovaAb
Location of target site ENST00000537020.1 | 3UTR | AAUUAAAGUGAUUCUCCUGCCUCAGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM1084081
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_SantaCruzAb
Location of target site ENST00000537020.1 | 3UTR | UAAAGUGAUUCUCCUGCCUCAGCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
390 hsa-miR-4419b Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061343 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT072743 GLCE glucuronic acid epimerase 2 2
MIRT180549 TXNIP thioredoxin interacting protein 2 2
MIRT186147 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT271044 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT334761 PPP1R15B protein phosphatase 1 regulatory subunit 15B 2 6
MIRT443279 TSPAN15 tetraspanin 15 2 2
MIRT447047 ZNF439 zinc finger protein 439 2 2
MIRT447351 KIF6 kinesin family member 6 2 2
MIRT448925 CKS1B CDC28 protein kinase regulatory subunit 1B 2 2
MIRT452899 PSD4 pleckstrin and Sec7 domain containing 4 2 2
MIRT453087 SUMF2 sulfatase modifying factor 2 2 2
MIRT454071 SLC35E3 solute carrier family 35 member E3 2 2
MIRT456216 LIX1L limb and CNS expressed 1 like 2 6
MIRT456951 LRP10 LDL receptor related protein 10 2 2
MIRT458025 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT459999 RFT1 RFT1 homolog 2 2
MIRT460046 CDCP1 CUB domain containing protein 1 2 2
MIRT460982 STK17B serine/threonine kinase 17b 2 2
MIRT464405 URM1 ubiquitin related modifier 1 2 2
MIRT466256 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 2
MIRT466536 TBXA2R thromboxane A2 receptor 2 2
MIRT470922 PLD5 phospholipase D family member 5 2 8
MIRT472835 MTMR10 myotubularin related protein 10 2 6
MIRT473352 MEMO1 mediator of cell motility 1 2 2
MIRT475504 HSP90B1 heat shock protein 90 beta family member 1 2 2
MIRT478862 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT480898 BCL9L B-cell CLL/lymphoma 9 like 2 2
MIRT482686 NXN nucleoredoxin 2 4
MIRT484128 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT486172 TLE3 transducin like enhancer of split 3 2 4
MIRT486539 CLCN7 chloride voltage-gated channel 7 2 2
MIRT486588 ZNF619 zinc finger protein 619 2 2
MIRT495475 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT495536 TXNRD2 thioredoxin reductase 2 2 2
MIRT495566 UNC5C unc-5 netrin receptor C 2 2
MIRT495719 PADI1 peptidyl arginine deiminase 1 2 2
MIRT495890 CLOCK clock circadian regulator 2 2
MIRT495932 SLC7A5P2 solute carrier family 7 member 5 pseudogene 2 2 2
MIRT496026 ZBED3 zinc finger BED-type containing 3 2 2
MIRT496216 PAX6 paired box 6 2 2
MIRT496349 VAMP1 vesicle associated membrane protein 1 2 2
MIRT496354 PPY pancreatic polypeptide 2 2
MIRT496400 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT496416 PARVB parvin beta 2 2
MIRT496458 N6AMT1 N-6 adenine-specific DNA methyltransferase 1 2 2
MIRT496519 GINS2 GINS complex subunit 2 2 2
MIRT496562 SLC39A9 solute carrier family 39 member 9 2 2
MIRT498605 KRT8 keratin 8 2 2
MIRT503434 SLC25A45 solute carrier family 25 member 45 2 6
MIRT503573 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT503847 ATP13A4 ATPase 13A4 2 4
MIRT504247 LHPP phospholysine phosphohistidine inorganic pyrophosphate phosphatase 2 4
MIRT505606 SLC35F1 solute carrier family 35 member F1 2 2
MIRT507749 CERS2 ceramide synthase 2 2 4
MIRT508411 C1orf210 chromosome 1 open reading frame 210 2 6
MIRT508508 RSRC1 arginine and serine rich coiled-coil 1 2 6
MIRT508944 AK4 adenylate kinase 4 2 4
MIRT509460 ZNF587 zinc finger protein 587 2 6
MIRT509862 ZNF641 zinc finger protein 641 2 4
MIRT511397 IKZF3 IKAROS family zinc finger 3 2 6
MIRT512517 BTBD19 BTB domain containing 19 2 2
MIRT513507 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 6
MIRT514155 TMEM145 transmembrane protein 145 2 4
MIRT514486 SLPI secretory leukocyte peptidase inhibitor 2 4
MIRT514521 SHISA9 shisa family member 9 2 2
MIRT514970 KLLN killin, p53-regulated DNA replication inhibitor 2 4
MIRT515030 IRAK4 interleukin 1 receptor associated kinase 4 2 6
MIRT515963 C9orf156 tRNA methyltransferase O 2 2
MIRT516092 ZBTB8OS zinc finger and BTB domain containing 8 opposite strand 2 4
MIRT517223 PRIM1 DNA primase subunit 1 2 4
MIRT517459 PEX26 peroxisomal biogenesis factor 26 2 4
MIRT517790 EFCAB11 EF-hand calcium binding domain 11 2 2
MIRT517979 DSCR3 DSCR3 arrestin fold containing 2 2
MIRT519458 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT519599 ZNF805 zinc finger protein 805 2 2
MIRT520339 UBXN2A UBX domain protein 2A 2 2
MIRT521345 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT521571 PTPLB 3-hydroxyacyl-CoA dehydratase 2 1 1
MIRT523382 GSG2 histone H3 associated protein kinase 2 8
MIRT524106 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT524886 ARHGAP11A Rho GTPase activating protein 11A 2 4
MIRT528772 CD1D CD1d molecule 2 2
MIRT530665 TRIM56 tripartite motif containing 56 2 2
MIRT531107 PEX13 peroxisomal biogenesis factor 13 2 2
MIRT531575 ILDR1 immunoglobulin like domain containing receptor 1 2 2
MIRT535173 PLEKHB2 pleckstrin homology domain containing B2 2 4
MIRT544168 HEYL hes related family bHLH transcription factor with YRPW motif-like 2 2
MIRT550582 SLC2A5 solute carrier family 2 member 5 2 2
MIRT551039 GDE1 glycerophosphodiester phosphodiesterase 1 2 4
MIRT551295 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT551339 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT552092 SLFN12L schlafen family member 12 like 2 6
MIRT555403 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT557087 HOXB3 homeobox B3 2 2
MIRT559388 ATP11C ATPase phospholipid transporting 11C 2 2
MIRT560305 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT561028 LIN7C lin-7 homolog C, crumbs cell polarity complex component 2 2
MIRT562460 COX6B1 cytochrome c oxidase subunit 6B1 2 4
MIRT562982 PARK7 Parkinsonism associated deglycase 2 2
MIRT563548 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT564412 EMILIN2 elastin microfibril interfacer 2 2 4
MIRT569437 PCGF3 polycomb group ring finger 3 2 2
MIRT572097 EXOC8 exocyst complex component 8 2 2
MIRT575571 Cd99 CD99 antigen 2 2
MIRT575789 Tnfrsf10b tumor necrosis factor receptor superfamily, member 10b 2 2
MIRT576975 Lmtk2 lemur tyrosine kinase 2 2 2
MIRT610864 ARSA arylsulfatase A 2 2
MIRT614061 NTPCR nucleoside-triphosphatase, cancer-related 2 2
MIRT614141 THAP1 THAP domain containing 1 2 6
MIRT615235 BROX BRO1 domain and CAAX motif containing 2 2
MIRT617429 ANP32E acidic nuclear phosphoprotein 32 family member E 2 4
MIRT618882 MBL2 mannose binding lectin 2 2 2
MIRT618984 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619196 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620323 AQP6 aquaporin 6 2 2
MIRT621960 STX7 syntaxin 7 2 2
MIRT622057 SSBP2 single stranded DNA binding protein 2 2 2
MIRT624930 FBXW2 F-box and WD repeat domain containing 2 2 2
MIRT624986 ZNF665 zinc finger protein 665 2 4
MIRT625463 ZNF681 zinc finger protein 681 2 4
MIRT625497 SMAD9 SMAD family member 9 2 2
MIRT625599 KLHL23 kelch like family member 23 2 2
MIRT625668 C2orf48 chromosome 2 open reading frame 48 2 2
MIRT625888 INADL PATJ, crumbs cell polarity complex component 2 2
MIRT626161 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT626238 ZNF749 zinc finger protein 749 2 2
MIRT626631 SLC30A6 solute carrier family 30 member 6 2 2
MIRT626994 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627898 OLFML2A olfactomedin like 2A 2 2
MIRT627988 NDRG3 NDRG family member 3 2 2
MIRT628324 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT628549 ZNF701 zinc finger protein 701 2 2
MIRT629464 WIZ widely interspaced zinc finger motifs 2 2
MIRT630527 BAZ2A bromodomain adjacent to zinc finger domain 2A 2 2
MIRT631487 KLHL21 kelch like family member 21 2 2
MIRT631957 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632178 CCL22 C-C motif chemokine ligand 22 2 2
MIRT632282 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT632321 TMEM185B transmembrane protein 185B 2 2
MIRT632853 IGF1 insulin like growth factor 1 2 2
MIRT632862 HSPA2 heat shock protein family A (Hsp70) member 2 2 2
MIRT633322 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT633398 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633930 DNAH9 dynein axonemal heavy chain 9 2 2
MIRT634785 CBFA2T2 CBFA2/RUNX1 translocation partner 2 2 2
MIRT634851 ABCF1 ATP binding cassette subfamily F member 1 2 2
MIRT636370 OGFRL1 opioid growth factor receptor like 1 2 2
MIRT637219 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT637690 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT639196 TRAPPC2 trafficking protein particle complex 2 2 2
MIRT639599 CD3EAP CD3e molecule associated protein 2 2
MIRT639681 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640669 ARSK arylsulfatase family member K 2 2
MIRT642377 ZNF581 zinc finger protein 581 2 2
MIRT642403 ZNF556 zinc finger protein 556 2 2
MIRT645079 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646475 ZNF669 zinc finger protein 669 2 2
MIRT647325 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT647490 ZNF639 zinc finger protein 639 2 2
MIRT647989 PDE12 phosphodiesterase 12 2 2
MIRT648196 CENPN centromere protein N 2 2
MIRT649006 MRPL49 mitochondrial ribosomal protein L49 2 2
MIRT650457 ZNF141 zinc finger protein 141 2 2
MIRT650533 CCDC77 coiled-coil domain containing 77 2 2
MIRT650999 ZNF770 zinc finger protein 770 2 2
MIRT653832 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 4
MIRT655734 NRXN3 neurexin 3 2 2
MIRT657577 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT658610 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 2
MIRT658633 ENAH ENAH, actin regulator 2 2
MIRT659820 CASP16 caspase 16, pseudogene 2 2
MIRT661142 ZNF43 zinc finger protein 43 2 2
MIRT661201 MPPE1 metallophosphoesterase 1 2 2
MIRT661436 MANSC1 MANSC domain containing 1 2 2
MIRT661498 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661682 ZNF623 zinc finger protein 623 2 2
MIRT661796 NLRC3 NLR family CARD domain containing 3 2 2
MIRT661808 NUP85 nucleoporin 85 2 2
MIRT661861 ZNF766 zinc finger protein 766 2 2
MIRT661889 EXOSC6 exosome component 6 2 2
MIRT662291 SLC29A4 solute carrier family 29 member 4 2 2
MIRT662515 ANGPT4 angiopoietin 4 2 2
MIRT662682 LRRC47 leucine rich repeat containing 47 2 2
MIRT662716 C10orf111 chromosome 10 open reading frame 111 2 4
MIRT662834 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT662890 PCDHA6 protocadherin alpha 6 2 2
MIRT663134 ULBP3 UL16 binding protein 3 2 2
MIRT663710 ABHD17B abhydrolase domain containing 17B 2 2
MIRT663869 MUC20 mucin 20, cell surface associated 2 2
MIRT664267 NMUR1 neuromedin U receptor 1 2 2
MIRT664510 POLR3K RNA polymerase III subunit K 2 2
MIRT664659 TRIM65 tripartite motif containing 65 2 2
MIRT664849 HUS1 HUS1 checkpoint clamp component 2 2
MIRT664944 CARD6 caspase recruitment domain family member 6 2 4
MIRT665348 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 2
MIRT665514 UTP15 UTP15, small subunit processome component 2 2
MIRT665648 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT665668 TRAF1 TNF receptor associated factor 1 2 2
MIRT665692 TNPO3 transportin 3 2 2
MIRT665741 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665850 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT665940 TBC1D19 TBC1 domain family member 19 2 4
MIRT666005 SYNJ2BP synaptojanin 2 binding protein 2 2
MIRT666172 SNX27 sorting nexin family member 27 2 4
MIRT666373 SHOX short stature homeobox 2 2
MIRT667004 PDPN podoplanin 2 4
MIRT667185 NR2F6 nuclear receptor subfamily 2 group F member 6 2 4
MIRT667603 LIPC lipase C, hepatic type 2 2
MIRT667828 IRGQ immunity related GTPase Q 2 2
MIRT667862 IPCEF1 interaction protein for cytohesin exchange factors 1 2 2
MIRT668296 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 4
MIRT668463 FAM208A family with sequence similarity 208 member A 2 2
MIRT668580 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 4
MIRT669012 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669103 CDK19 cyclin dependent kinase 19 2 2
MIRT670073 ZNF783 zinc finger family member 783 2 2
MIRT670326 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT670756 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670964 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT670985 MED17 mediator complex subunit 17 2 2
MIRT671195 ZNF891 zinc finger protein 891 2 2
MIRT672423 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672495 YIPF4 Yip1 domain family member 4 2 2
MIRT672537 MGAM maltase-glucoamylase 2 2
MIRT672749 ZNF585B zinc finger protein 585B 2 4
MIRT673390 ZNF124 zinc finger protein 124 2 2
MIRT673452 ZNF583 zinc finger protein 583 2 2
MIRT673917 DCTN6 dynactin subunit 6 2 2
MIRT673952 ZNF500 zinc finger protein 500 2 2
MIRT674102 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674167 BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 2 2
MIRT674206 FUT2 fucosyltransferase 2 2 2
MIRT674452 PURB purine rich element binding protein B 2 4
MIRT674687 PLCE1 phospholipase C epsilon 1 2 2
MIRT674701 TMEM59 transmembrane protein 59 2 2
MIRT674800 NPR1 natriuretic peptide receptor 1 2 4
MIRT675247 MAK male germ cell associated kinase 2 2
MIRT676012 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676374 APTX aprataxin 2 2
MIRT676834 TNFSF15 TNF superfamily member 15 2 2
MIRT678193 CRCP CGRP receptor component 2 2
MIRT678293 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT679532 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679669 RABAC1 Rab acceptor 1 2 2
MIRT679850 GPR75 G protein-coupled receptor 75 2 2
MIRT680533 PRIM2 DNA primase subunit 2 2 2
MIRT680563 ZNF584 zinc finger protein 584 2 2
MIRT680577 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT680849 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680888 MAPK1IP1L mitogen-activated protein kinase 1 interacting protein 1 like 2 2
MIRT680940 EVC EvC ciliary complex subunit 1 2 2
MIRT680964 SLC15A1 solute carrier family 15 member 1 2 4
MIRT681017 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681065 PAQR7 progestin and adipoQ receptor family member 7 2 2
MIRT681209 ZNF638 zinc finger protein 638 2 2
MIRT681291 RFC2 replication factor C subunit 2 2 2
MIRT681366 BRI3BP BRI3 binding protein 2 2
MIRT681517 STAT2 signal transducer and activator of transcription 2 2 2
MIRT681549 ZNF738 zinc finger protein 738 2 2
MIRT681574 ABHD15 abhydrolase domain containing 15 2 2
MIRT681597 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT681806 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681912 SLC11A2 solute carrier family 11 member 2 2 2
MIRT681953 SLC19A3 solute carrier family 19 member 3 2 2
MIRT682037 AGXT2 alanine--glyoxylate aminotransferase 2 2 4
MIRT682111 ITGA3 integrin subunit alpha 3 2 4
MIRT682190 SLC38A7 solute carrier family 38 member 7 2 2
MIRT682247 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682394 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682554 EXOSC2 exosome component 2 2 2
MIRT682665 CASP8 caspase 8 2 2
MIRT683283 ZNF99 zinc finger protein 99 2 2
MIRT683359 SCARF1 scavenger receptor class F member 1 2 2
MIRT683453 ACOT2 acyl-CoA thioesterase 2 2 2
MIRT683596 GSTCD glutathione S-transferase C-terminal domain containing 2 2
MIRT683661 ZNF695 zinc finger protein 695 2 2
MIRT683770 CPE carboxypeptidase E 2 2
MIRT683807 NOTO notochord homeobox 2 2
MIRT684462 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684525 C1orf174 chromosome 1 open reading frame 174 2 2
MIRT684985 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685012 CXorf56 chromosome X open reading frame 56 2 2
MIRT685072 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685115 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685477 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT685831 SLC27A1 solute carrier family 27 member 1 2 2
MIRT686032 UMPS uridine monophosphate synthetase 2 2
MIRT686559 TPM3 tropomyosin 3 2 2
MIRT687287 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT687309 OTUD7B OTU deubiquitinase 7B 2 2
MIRT688085 GLUL glutamate-ammonia ligase 2 2
MIRT688168 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT688584 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT688601 CYCS cytochrome c, somatic 2 2
MIRT688921 C11orf84 chromosome 11 open reading frame 84 2 2
MIRT689285 C5AR2 complement component 5a receptor 2 2 2
MIRT689622 AKAP6 A-kinase anchoring protein 6 2 2
MIRT690051 C6orf141 chromosome 6 open reading frame 141 2 2
MIRT690224 C5orf45 MRN complex interacting protein 2 2
MIRT690272 CAMLG calcium modulating ligand 2 2
MIRT690331 MRPS30 mitochondrial ribosomal protein S30 2 2
MIRT690480 ZNF33A zinc finger protein 33A 2 2
MIRT690526 ZNF566 zinc finger protein 566 2 2
MIRT690581 MICA MHC class I polypeptide-related sequence A 2 2
MIRT690675 RPF2 ribosome production factor 2 homolog 2 2
MIRT690790 ZNF589 zinc finger protein 589 2 2
MIRT690873 PLEKHG2 pleckstrin homology and RhoGEF domain containing G2 2 2
MIRT691142 HJURP Holliday junction recognition protein 2 2
MIRT691158 APOL6 apolipoprotein L6 2 2
MIRT691288 CENPM centromere protein M 2 2
MIRT691435 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT691749 IKBKG inhibitor of nuclear factor kappa B kinase subunit gamma 2 2
MIRT691833 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT691885 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT691947 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT692047 PAK1IP1 PAK1 interacting protein 1 2 2
MIRT692668 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692767 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT692859 ZSWIM1 zinc finger SWIM-type containing 1 2 2
MIRT693122 SCNM1 sodium channel modifier 1 2 2
MIRT693514 MOB3A MOB kinase activator 3A 2 2
MIRT693648 ACBD7 acyl-CoA binding domain containing 7 2 2
MIRT693688 MXRA7 matrix remodeling associated 7 2 2
MIRT694078 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT694163 SLC36A2 solute carrier family 36 member 2 2 2
MIRT694262 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT694506 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694556 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT694639 MRI1 methylthioribose-1-phosphate isomerase 1 2 2
MIRT694710 CD300LG CD300 molecule like family member g 2 2
MIRT694753 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT694896 ZNF417 zinc finger protein 417 2 2
MIRT695158 BTD biotinidase 2 2
MIRT695275 CD209 CD209 molecule 2 2
MIRT695434 TCF23 transcription factor 23 2 2
MIRT695817 SRD5A1 steroid 5 alpha-reductase 1 2 2
MIRT696008 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT696345 SLC35D2 solute carrier family 35 member D2 2 2
MIRT696368 EIF2S3 eukaryotic translation initiation factor 2 subunit gamma 2 2
MIRT696533 C3 complement C3 2 2
MIRT696779 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT697075 PSMC4 proteasome 26S subunit, ATPase 4 2 2
MIRT697498 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT697630 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT697931 TXNDC16 thioredoxin domain containing 16 2 2
MIRT697966 TSPYL1 TSPY like 1 2 2
MIRT698237 TMEM216 transmembrane protein 216 2 2
MIRT698643 TES testin LIM domain protein 2 2
MIRT698661 TERF2 telomeric repeat binding factor 2 2 2
MIRT698974 SPAST spastin 2 2
MIRT699047 SOAT1 sterol O-acyltransferase 1 2 2
MIRT699193 SLX4IP SLX4 interacting protein 2 2
MIRT699586 SIKE1 suppressor of IKBKE 1 2 2
MIRT699759 SEPHS1 selenophosphate synthetase 1 2 2
MIRT700350 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700402 RAB13 RAB13, member RAS oncogene family 2 2
MIRT700418 QDPR quinoid dihydropteridine reductase 2 2
MIRT700546 PTBP2 polypyrimidine tract binding protein 2 2 2
MIRT700774 PLA2G4A phospholipase A2 group IVA 2 2
MIRT700875 PER2 period circadian clock 2 2 2
MIRT700952 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT701077 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT701172 PACS2 phosphofurin acidic cluster sorting protein 2 2 2
MIRT701479 NEK9 NIMA related kinase 9 2 2
MIRT701661 MYH9 myosin heavy chain 9 2 2
MIRT701779 MSL2 MSL complex subunit 2 2 2
MIRT702137 MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5 2 2
MIRT702494 KIAA1328 KIAA1328 2 2
MIRT703058 GTPBP10 GTP binding protein 10 2 2
MIRT703224 GOLGA3 golgin A3 2 2
MIRT703620 FBXO45 F-box protein 45 2 2
MIRT703657 FAM60A SIN3-HDAC complex associated factor 2 2
MIRT703765 FAM118A family with sequence similarity 118 member A 2 2
MIRT703832 EVI5 ecotropic viral integration site 5 2 2
MIRT703862 ERN1 endoplasmic reticulum to nucleus signaling 1 2 2
MIRT704664 CLCC1 chloride channel CLIC like 1 2 2
MIRT704812 CDC73 cell division cycle 73 2 2
MIRT705608 APAF1 apoptotic peptidase activating factor 1 2 2
MIRT705625 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 2
MIRT705682 ANKRD40 ankyrin repeat domain 40 2 2
MIRT705813 AKNA AT-hook transcription factor 2 2
MIRT706238 SYT15 synaptotagmin 15 2 2
MIRT706567 EIF2AK2 eukaryotic translation initiation factor 2 alpha kinase 2 2 2
MIRT709657 DFFB DNA fragmentation factor subunit beta 2 2
MIRT710609 ZNF555 zinc finger protein 555 2 2
MIRT711717 IREB2 iron responsive element binding protein 2 2 2
MIRT714122 TMED9 transmembrane p24 trafficking protein 9 2 2
MIRT715204 FKTN fukutin 2 2
MIRT718260 ZDHHC8 zinc finger DHHC-type containing 8 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4419b Fluorouracil 3385 NSC19893 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-4419b Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-4419b Cisplatin + Decitabine resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-mir-4419b Androstenedione+Anastrozole sensitive cell line (MCF-7)

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