pre-miRNA Information
pre-miRNA hsa-mir-6509   
Genomic Coordinates chr7: 135206994 - 135207078
Description Homo sapiens miR-6509 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6509-3p
Sequence 52| UUCCACUGCCACUACCUAAUUU |73
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs778601614 1 dbSNP
rs754554776 3 dbSNP
rs767798995 3 dbSNP
rs145322812 4 dbSNP
rs773941257 5 dbSNP
rs768273593 9 dbSNP
rs984565062 12 dbSNP
rs748872915 13 dbSNP
rs774861125 14 dbSNP
rs13241975 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol REPS1   
Synonyms RALBP1
Description RALBP1 associated Eps domain containing 1
Transcript NM_001128617   
Other Transcripts NM_031922   
Expression
Putative miRNA Targets on REPS1
3'UTR of REPS1
(miRNA target sites are highlighted)
>REPS1|NM_001128617|3'UTR
   1 GCCAATTGCCGTTAACTGTGAACATACTTGTTTTTAAGTGGTTTTGGGTTCAAAGCCAATTTGGAGACCTAGACATTCAG
  81 CTCACTGCTTAACTCAACATTAAATTTTATGATTCTGTTTTGCCCTATATGTTCACCGTTGTATTTAAGTATCTTTTATT
 161 TTTTAATTTCGACAATAAAAAGGTCAGGATGGCGTTTTCTGGAGGGTAGATTGTGTTTGTTGGCACACCCACCTTTTCTG
 241 TTCCCTAGCATCTGGGATATGCAATGCTTCTATGGCTAATACCACACACCAATTTAATTTATAGAATGGGCTCCTCATTT
 321 ACATCTCAGTCACAGACTCAGAAATAAATTGTCAGTTTGTCCTTTTATGTTTAATATTTTACATAAAGCATCTATTCTAT
 401 AAAAATCTTTAGAAAGAGTTTCCCATTTAATTTTGATTTTAAAGAATTATATTGGATAAGGTGGTTTTCACCATAAGCTA
 481 ATTTACTCTCTGCAGCCGTCTACATTCTTCACAAATCATGTGGTACATTGAAGCCTCTTTTACATGTCAACTTGTGACAA
 561 ATACAAACATGTGAGATTTTATATTTTCCTTGTGGAAATGTGATCAACTTCATCAGCGACTTCGAACTATTTTATGAGAT
 641 TCAATAATTCAGCAGTCATGTAAACTTATGAAATAGGTATGAGTAATGGCCTTTCTTAATTTTTTTAAGTATTGTTTTAA
 721 AACTTCTGAGGATATCAGTTATTCCCAGAATAAAGGGAAATTCCTTAGGATTTCTAGTTTACCTTTAGCCATCTTGTCAC
 801 TCATTCTTTTGCTATACAGACAAGTTTTTCCTATTAATGAGTTTCTGGAGTATGCCTTATTCAGGACAATATGCTGTTTT
 881 AGATTTTGTTTAATATTAAATGATATATACATTTCGATCCATTGCTAACAGCAGATATTCCCTTTAAGATTTATTCTGTC
 961 TATAGGATCATAGATTTTAAACTGCATGGATATATCTTGGCAGAATCAGAAGTGTGGTTTTACACCAATAAAACAGCATA
1041 ATATTTTAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uuUAAUCCAUCAC-CGUCACCuu 5'
            | |||||| || |:| |||  
Target 5' gaAATAGGTA-TGAGTAATGGcc 3'
670 - 691 103.00 -11.10
2
miRNA  3' uuuaauccaucaccgUCACCuu 5'
                         |||||  
Target 5' acatacttgtttttaAGTGGtt 3'
22 - 43 100.00 -6.16
3
miRNA  3' uuuaauccaucaccguCACCUu 5'
                          ||||| 
Target 5' attttatattttccttGTGGAa 3'
576 - 597 100.00 -6.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30499450 11 COSMIC
COSN28193760 48 COSMIC
COSN31559158 106 COSMIC
COSN31587591 115 COSMIC
COSN26562511 123 COSMIC
COSN31608012 157 COSMIC
COSN31581975 160 COSMIC
COSN14198752 170 COSMIC
COSN26747190 193 COSMIC
COSN31555134 248 COSMIC
COSN20103434 391 COSMIC
COSN30542535 407 COSMIC
COSN16431636 441 COSMIC
COSN22436961 644 COSMIC
COSN2143746 757 COSMIC
COSN23648090 1015 COSMIC
COSN26246925 1048 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs779711887 2 dbSNP
rs1254322337 5 dbSNP
rs1183888133 8 dbSNP
rs758158391 10 dbSNP
rs750266060 11 dbSNP
rs765070879 12 dbSNP
rs761878578 15 dbSNP
rs770896612 17 dbSNP
rs1206693281 20 dbSNP
rs746783834 20 dbSNP
rs753725645 21 dbSNP
rs774777718 21 dbSNP
rs369809494 25 dbSNP
rs769001182 25 dbSNP
rs1006657682 26 dbSNP
rs749473533 26 dbSNP
rs1268128783 27 dbSNP
rs1430741860 29 dbSNP
rs192538233 31 dbSNP
rs780024083 32 dbSNP
rs775818659 34 dbSNP
rs1353083109 36 dbSNP
rs1050504415 45 dbSNP
rs772467597 46 dbSNP
rs759959883 48 dbSNP
rs756181664 52 dbSNP
rs774840108 54 dbSNP
rs1374137495 56 dbSNP
rs771200404 59 dbSNP
rs556232082 63 dbSNP
rs778160787 64 dbSNP
rs768112041 68 dbSNP
rs1460980477 69 dbSNP
rs746561781 75 dbSNP
rs746405002 77 dbSNP
rs932075607 79 dbSNP
rs1340589490 84 dbSNP
rs1226228948 92 dbSNP
rs758278576 110 dbSNP
rs1277931339 122 dbSNP
rs374980867 129 dbSNP
rs1354134941 152 dbSNP
rs1311419703 156 dbSNP
rs558646228 160 dbSNP
rs1334080903 163 dbSNP
rs770387672 170 dbSNP
rs1484638333 171 dbSNP
rs1202148490 175 dbSNP
rs1256949355 186 dbSNP
rs920141924 193 dbSNP
rs943859110 194 dbSNP
rs1392188605 202 dbSNP
rs924553305 207 dbSNP
rs372422578 210 dbSNP
rs1393706768 215 dbSNP
rs937485147 218 dbSNP
rs1437086523 224 dbSNP
rs878963287 229 dbSNP
rs1173738147 230 dbSNP
rs927467439 240 dbSNP
rs1328194501 243 dbSNP
rs537373827 246 dbSNP
rs980960674 256 dbSNP
rs1396827004 258 dbSNP
rs112317836 264 dbSNP
rs1435427311 266 dbSNP
rs1302378224 267 dbSNP
rs917629299 271 dbSNP
rs12619 276 dbSNP
rs565532438 277 dbSNP
rs369917452 281 dbSNP
rs956617416 283 dbSNP
rs201135918 287 dbSNP
rs1465493081 292 dbSNP
rs565487647 298 dbSNP
rs1251514020 301 dbSNP
rs369135460 303 dbSNP
rs962217138 313 dbSNP
rs1363660049 317 dbSNP
rs1452295801 323 dbSNP
rs1156254415 328 dbSNP
rs1160837775 331 dbSNP
rs1015630265 335 dbSNP
rs1457439680 351 dbSNP
rs1324871211 362 dbSNP
rs547069604 364 dbSNP
rs1368351539 376 dbSNP
rs1388232303 391 dbSNP
rs189149803 394 dbSNP
rs1335049334 399 dbSNP
rs398066318 401 dbSNP
rs79317720 401 dbSNP
rs1187556050 407 dbSNP
rs11758502 410 dbSNP
rs1255034075 415 dbSNP
rs1271441514 418 dbSNP
rs891170821 418 dbSNP
rs1489591191 425 dbSNP
rs1025605352 437 dbSNP
rs1488511333 469 dbSNP
rs1417821687 473 dbSNP
rs1185060572 476 dbSNP
rs1028953332 479 dbSNP
rs996110643 480 dbSNP
rs1286025955 487 dbSNP
rs1347719606 492 dbSNP
rs901949815 493 dbSNP
rs1203329693 497 dbSNP
rs549461601 498 dbSNP
rs1284701145 501 dbSNP
rs1395553484 502 dbSNP
rs1008504291 503 dbSNP
rs903016309 504 dbSNP
rs1042064008 510 dbSNP
rs947296572 511 dbSNP
rs1414359491 514 dbSNP
rs191946632 515 dbSNP
rs1291548303 520 dbSNP
rs937597588 520 dbSNP
rs1341550837 538 dbSNP
rs563818511 540 dbSNP
rs1320628837 541 dbSNP
rs1399471292 544 dbSNP
rs1207757676 545 dbSNP
rs1253082389 550 dbSNP
rs1475187678 562 dbSNP
rs1186546987 563 dbSNP
rs755126565 570 dbSNP
rs201719251 571 dbSNP
rs187311891 576 dbSNP
rs1165122614 581 dbSNP
rs548809949 592 dbSNP
rs1372270886 605 dbSNP
rs1055489541 607 dbSNP
rs917639072 608 dbSNP
rs1414115348 612 dbSNP
rs987818575 614 dbSNP
rs1229092565 615 dbSNP
rs935008226 617 dbSNP
rs12197798 618 dbSNP
rs753999578 623 dbSNP
rs183116909 624 dbSNP
rs1235235369 631 dbSNP
rs962562873 639 dbSNP
rs371525717 642 dbSNP
rs192903837 644 dbSNP
rs952310323 651 dbSNP
rs963990523 652 dbSNP
rs1260520223 659 dbSNP
rs1447316721 664 dbSNP
rs745919518 669 dbSNP
rs1170194070 674 dbSNP
rs1215454077 676 dbSNP
rs1433991298 677 dbSNP
rs1173937989 681 dbSNP
rs1360842427 682 dbSNP
rs1337085218 689 dbSNP
rs565285020 691 dbSNP
rs1363235028 703 dbSNP
rs986615651 705 dbSNP
rs1232917033 712 dbSNP
rs1298760644 723 dbSNP
rs996156231 724 dbSNP
rs966056906 732 dbSNP
rs1313297626 738 dbSNP
rs1210158917 741 dbSNP
rs1044425 747 dbSNP
rs1272140148 758 dbSNP
rs1259651751 764 dbSNP
rs1429135524 765 dbSNP
rs1019479842 777 dbSNP
rs898532289 791 dbSNP
rs999610950 802 dbSNP
rs1453513366 803 dbSNP
rs1016883852 810 dbSNP
rs902554599 811 dbSNP
rs1427130709 815 dbSNP
rs1002233699 824 dbSNP
rs1158454238 828 dbSNP
rs906076932 833 dbSNP
rs1459020334 837 dbSNP
rs1321533333 839 dbSNP
rs1370546060 845 dbSNP
rs777709138 850 dbSNP
rs565001339 852 dbSNP
rs1046328718 863 dbSNP
rs1011393942 864 dbSNP
rs1368856670 870 dbSNP
rs893084895 871 dbSNP
rs1223762407 872 dbSNP
rs1266904879 876 dbSNP
rs1326547987 878 dbSNP
rs950218089 879 dbSNP
rs1055708420 881 dbSNP
rs891951207 888 dbSNP
rs879504177 906 dbSNP
rs1248296029 907 dbSNP
rs1478298782 908 dbSNP
rs1176620349 910 dbSNP
rs543415154 910 dbSNP
rs928318784 915 dbSNP
rs1009264496 916 dbSNP
rs1473578192 925 dbSNP
rs940459604 930 dbSNP
rs544643582 934 dbSNP
rs984941602 938 dbSNP
rs1421275984 942 dbSNP
rs1325914582 948 dbSNP
rs1350873579 950 dbSNP
rs924978855 953 dbSNP
rs1286939553 959 dbSNP
rs576328867 960 dbSNP
rs1229659841 969 dbSNP
rs1474982163 976 dbSNP
rs1288455027 983 dbSNP
rs1355186488 990 dbSNP
rs1247029629 992 dbSNP
rs764307121 996 dbSNP
rs1291762477 1000 dbSNP
rs1452028458 1007 dbSNP
rs1204189798 1010 dbSNP
rs530980482 1018 dbSNP
rs974956566 1020 dbSNP
rs1182925178 1028 dbSNP
rs1467041820 1034 dbSNP
rs987053835 1038 dbSNP
rs966477862 1043 dbSNP
rs1251227066 1051 dbSNP
rs1471914174 1051 dbSNP
rs1213216728 1054 dbSNP
rs1308139253 1055 dbSNP
rs1018946720 1063 dbSNP
rs371099909 1075 dbSNP
rs187735377 1077 dbSNP
rs972827535 1086 dbSNP
rs1411028314 1114 dbSNP
rs1308083635 1116 dbSNP
rs1304551337 1121 dbSNP
rs962767013 1124 dbSNP
rs1285534868 1125 dbSNP
rs966839799 1128 dbSNP
rs139231487 1139 dbSNP
rs1369513178 1140 dbSNP
rs1011446246 1148 dbSNP
rs892968024 1155 dbSNP
rs1034307147 1160 dbSNP
rs568318159 1164 dbSNP
rs571924719 1165 dbSNP
rs1189713058 1166 dbSNP
rs182638255 1169 dbSNP
rs1449117966 1171 dbSNP
rs1408965147 1174 dbSNP
rs548235738 1175 dbSNP
rs1430952284 1178 dbSNP
rs907080702 1183 dbSNP
rs1045414347 1192 dbSNP
rs1400712885 1200 dbSNP
rs761244059 1203 dbSNP
rs776199352 1209 dbSNP
rs1014907158 1226 dbSNP
rs892002203 1231 dbSNP
rs1048783314 1234 dbSNP
rs930846044 1241 dbSNP
rs538347229 1257 dbSNP
rs922099376 1271 dbSNP
rs974840922 1272 dbSNP
rs763056875 1280 dbSNP
rs999277492 1281 dbSNP
rs903569166 1282 dbSNP
rs1202199719 1287 dbSNP
rs1279487221 1291 dbSNP
rs7769274 1298 dbSNP
rs1186986592 1299 dbSNP
rs759953141 1300 dbSNP
rs942355943 1302 dbSNP
rs910863132 1303 dbSNP
rs912109948 1307 dbSNP
rs1376385077 1328 dbSNP
rs1051052993 1331 dbSNP
rs1053525983 1336 dbSNP
rs1234621991 1340 dbSNP
rs1202708725 1355 dbSNP
rs1318201942 1358 dbSNP
rs1437392530 1359 dbSNP
rs1366932319 1360 dbSNP
rs536539820 1362 dbSNP
rs978143538 1373 dbSNP
rs1237028722 1375 dbSNP
rs918459934 1388 dbSNP
rs967102246 1396 dbSNP
rs1303362621 1418 dbSNP
rs1235379052 1420 dbSNP
rs1275510706 1420 dbSNP
rs1328651901 1422 dbSNP
rs972502885 1426 dbSNP
rs1224784236 1435 dbSNP
rs1270180604 1439 dbSNP
rs1465536331 1440 dbSNP
rs1374912046 1442 dbSNP
rs1277208290 1443 dbSNP
rs772683145 1445 dbSNP
rs150828469 1456 dbSNP
rs78682362 1477 dbSNP
rs574041228 1481 dbSNP
rs1375758954 1482 dbSNP
rs1200277550 1483 dbSNP
rs909939703 1484 dbSNP
rs1314317719 1485 dbSNP
rs1156321193 1486 dbSNP
rs1432684484 1496 dbSNP
rs1454038891 1500 dbSNP
rs747618717 1502 dbSNP
rs1188875 1515 dbSNP
rs1324065780 1518 dbSNP
rs1034192510 1534 dbSNP
rs1349806196 1537 dbSNP
rs1257841751 1543 dbSNP
rs1159213497 1551 dbSNP
rs1226611462 1552 dbSNP
rs141453558 1554 dbSNP
rs1330056247 1556 dbSNP
rs907135231 1561 dbSNP
rs1244385075 1565 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084067. RNA binding protein: AGO2. Condition:CLIP_emetine_SantaCruzAb HITS-CLIP data was present in GSM1084078. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_AbnovaAb HITS-CLIP data was present in GSM1084080. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_SantaCruzAb HITS-CLIP data was present in GSM1084081. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_SantaCruzAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084067
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_SantaCruzAb
Location of target site ENST00000383432.3 | 3UTR | CCAUGGGAGGACGAAGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084078
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep2_AbnovaAb
Location of target site ENST00000383432.3 | 3UTR | CCAUGGGAGGACGAAGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084081
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_SantaCruzAb
Location of target site ENST00000383432.3 | 3UTR | CCAUGGGAGGACGAAGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
82 hsa-miR-6509-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055374 PDCD4 programmed cell death 4 2 4
MIRT378341 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT444668 CDKL2 cyclin dependent kinase like 2 2 2
MIRT446953 CD248 CD248 molecule 2 2
MIRT460332 CAMK4 calcium/calmodulin dependent protein kinase IV 2 6
MIRT464078 VPS4A vacuolar protein sorting 4 homolog A 2 2
MIRT464586 UBN2 ubinuclein 2 2 2
MIRT468482 SESN3 sestrin 3 2 2
MIRT468962 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT475455 HSPA8 heat shock protein family A (Hsp70) member 8 2 2
MIRT482403 ADRB1 adrenoceptor beta 1 2 10
MIRT486992 ZFAND2B zinc finger AN1-type containing 2B 2 2
MIRT489397 TUBB2A tubulin beta 2A class IIa 2 2
MIRT526319 UGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus 2 2
MIRT526560 UGT2A2 UDP glucuronosyltransferase family 2 member A2 2 2
MIRT526732 ZNF138 zinc finger protein 138 2 8
MIRT531581 STXBP5L syntaxin binding protein 5 like 2 2
MIRT532011 NOX5 NADPH oxidase 5 2 2
MIRT533407 TXLNG taxilin gamma 2 2
MIRT533436 TRPC5 transient receptor potential cation channel subfamily C member 5 2 2
MIRT533866 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT539254 ANKRD50 ankyrin repeat domain 50 2 2
MIRT541451 C15orf48 chromosome 15 open reading frame 48 2 2
MIRT566794 MIER3 MIER family member 3 2 2
MIRT569294 SURF6 surfeit 6 2 2
MIRT571336 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT572802 PPP3CB protein phosphatase 3 catalytic subunit beta 2 2
MIRT572813 MYO1C myosin IC 2 2
MIRT574219 DMRT2 doublesex and mab-3 related transcription factor 2 2 2
MIRT607259 GRAMD1B GRAM domain containing 1B 2 4
MIRT609307 CHD4 chromodomain helicase DNA binding protein 4 2 2
MIRT615459 REPS1 RALBP1 associated Eps domain containing 1 2 2
MIRT616861 RPLP1 ribosomal protein lateral stalk subunit P1 2 2
MIRT619415 NOS1AP nitric oxide synthase 1 adaptor protein 2 2
MIRT619652 COX19 COX19, cytochrome c oxidase assembly factor 2 2
MIRT625325 TNFRSF13B TNF receptor superfamily member 13B 2 2
MIRT638980 ARFIP2 ADP ribosylation factor interacting protein 2 2 2
MIRT639458 ZNF429 zinc finger protein 429 2 2
MIRT640550 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 2
MIRT641473 B4GALNT3 beta-1,4-N-acetyl-galactosaminyltransferase 3 2 2
MIRT642720 ATXN3 ataxin 3 2 2
MIRT643048 SMN1 survival of motor neuron 1, telomeric 2 2
MIRT644921 SMN2 survival of motor neuron 2, centromeric 2 2
MIRT645875 ZNF275 zinc finger protein 275 2 2
MIRT649824 LIPG lipase G, endothelial type 2 2
MIRT649851 GYS2 glycogen synthase 2 2 2
MIRT649972 TRAFD1 TRAF-type zinc finger domain containing 1 2 2
MIRT650675 ZNF259 ZPR1 zinc finger 1 1
MIRT651319 ZCCHC2 zinc finger CCHC-type containing 2 2 2
MIRT652876 TAB1 TGF-beta activated kinase 1 (MAP3K7) binding protein 1 2 2
MIRT652881 SYVN1 synoviolin 1 2 2
MIRT654144 RPAP2 RNA polymerase II associated protein 2 2 2
MIRT657080 JMY junction mediating and regulatory protein, p53 cofactor 2 2
MIRT657181 INO80C INO80 complex subunit C 2 2
MIRT657830 GJD3 gap junction protein delta 3 2 2
MIRT657897 GDF7 growth differentiation factor 7 2 2
MIRT659631 CDKN2AIP CDKN2A interacting protein 2 2
MIRT663115 SPTA1 spectrin alpha, erythrocytic 1 2 2
MIRT664739 METTL16 methyltransferase like 16 2 2
MIRT667551 LRAT lecithin retinol acyltransferase 2 2
MIRT668552 ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit 2 2
MIRT682893 XIAP X-linked inhibitor of apoptosis 2 2
MIRT683092 PRRG4 proline rich and Gla domain 4 2 2
MIRT683102 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT697648 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT709158 ZNF419 zinc finger protein 419 2 2
MIRT713220 RCAN2 regulator of calcineurin 2 2 2
MIRT713277 LAIR1 leukocyte associated immunoglobulin like receptor 1 2 2
MIRT715008 CYP1B1 cytochrome P450 family 1 subfamily B member 1 2 2
MIRT715051 SYNJ2BP synaptojanin 2 binding protein 2 2
MIRT715696 PNMAL2 paraneoplastic Ma antigen family member 8B 2 2
MIRT717250 TMEM246 transmembrane protein 246 2 2
MIRT717322 PGK1 phosphoglycerate kinase 1 2 2
MIRT717587 MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like 2 2
MIRT718122 CHST4 carbohydrate sulfotransferase 4 2 2
MIRT718418 CALN1 calneuron 1 2 2
MIRT718750 ZNF490 zinc finger protein 490 2 2
MIRT720048 PPP1R3F protein phosphatase 1 regulatory subunit 3F 2 2
MIRT721497 THRB thyroid hormone receptor beta 2 2
MIRT722531 EPRS glutamyl-prolyl-tRNA synthetase 2 2
MIRT723279 KRTAP21-2 keratin associated protein 21-2 2 2
MIRT724813 MSX2 msh homeobox 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-6509-3p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-6509-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-6509-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-6509-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-6509-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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