pre-miRNA Information
pre-miRNA hsa-mir-6787   
Genomic Coordinates chr17: 82236668 - 82236728
Description Homo sapiens miR-6787 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6787-5p
Sequence 6| UGGCGGGGGUAGAGCUGGCUGC |27
Evidence Experimental
Experiments Meta-analysis
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs778888046 4 dbSNP
rs772018061 5 dbSNP
rs760886644 6 dbSNP
rs776925052 7 dbSNP
rs760060985 8 dbSNP
rs1432528063 9 dbSNP
rs778772390 10 dbSNP
rs924024166 11 dbSNP
rs201523090 13 dbSNP
rs1451075810 17 dbSNP
rs1378844609 18 dbSNP
Putative Targets

Gene Information
Gene Symbol DHTKD1   
Synonyms AMOXAD, CMT2Q
Description dehydrogenase E1 and transketolase domain containing 1
Transcript NM_018706   
Expression
Putative miRNA Targets on DHTKD1
3'UTR of DHTKD1
(miRNA target sites are highlighted)
>DHTKD1|NM_018706|3'UTR
   1 TGATGACTTTTGAAGAAACACTATTTCTCTTTAAGAAAATGGCCATTAAGGCCGGGTGGGGTGGCACATGCCTGTAATCC
  81 CAGCACTTTGGGAGGCCAAGGCTGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACACGGTGAAACCCC
 161 GCCTCTACTAAAAATACAAAAAATAGCCGGGTGTGGTGGTGGGCACCTGTGATCCCAGCTTCCTGGGAGGCTGAGGCAAG
 241 AGAATCGCTTGAATCTGGGAGGCGGAGGTTGCAGTGAGCCAGGATCACACCATTGCTGTCCAGCCTGGGTGACAGAGCAA
 321 GACTGCGTTTCAAAAAAAAAAAAAAAAAAACCCATTAAAAGAGGCCTCCTTCCTCCACTCTCTCAACCCCTCTGTTGGGT
 401 AACATGAAAAGACTGTATTCCTCTAAGATGTTGGGATTGATATACGTGATTTAATCTGCAATAGGTGGAATAACCAGGGG
 481 AACTGGTTATGAATATGTGAATGCAACCAGCAAATTTATCCTTGAAGGTGTGATGGTAGAAATAGGAAAACAACAAAAGA
 561 AAAACAATAACAAAAAAAGAAAGTGTGATGGCTGGGTGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTTAG
 641 GCGGCTGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGTCAACGTGGTGAAACGCCGTTTCTACTAAAAATATGAA
 721 AATTAGTTGGGTGTGGTGGCATGCGCTTGTAGTCTCAGCTACTCCGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGAA
 801 GGCAGAGGTTGCAGTGAGCCGAAATGGCGCCACTGTACTCCAACCTGGGCGACAGAGCAAGACTCCATCTCATAAATTAA
 881 AAGGAAAGTATGATAGTGTTATGGATTTTAGCTCTGAGTGAGCTGGAAAACTAGGTCATTATCTAGATGATTTCAGACTT
 961 GACCCTAATTGACCATATATGACCAGGAAACACTTCTGAGTTTACAGCTCCGTGGAGATGACCTCAACACTGCCTCTTGA
1041 TTTGTTTGATGCATGTCACTTTCATTAATTTTCCCCCTCCTTTTTGAAAGTCCTGTGGCAGTACTAATATTTTCATTTTA
1121 TGTAATCTCTGGTGCTGCTTTCCAGTCACTGTATGAAGTGTCTCCCCAACACTAGCAAATCTAGGTCCTACTAAATACAA
1201 ATCTCTGGGTGGATGATCTTCTAGTACTGTATTTTTAAATTAAGGAGTTTTAGTTATAATGAAATTGATTTGTAGTCTGT
1281 TTTGCCGTAAACTTGTTTTTCTTTAAATTGTTCTTACAGTGATATCTTACTATTTTTAACTGTCTGGGGTTTCTGATATG
1361 GGGATTTCAGCCCCTGGTTAATCAGTCTTGTCCCTACAAGTCCCTGATGCAGTATGTTTATTTGTGATGTTTAAAGAACA
1441 TTTCTTGGCTGGGCGCTGCGGCTTGCGCCTGTAATCTCAGCACTTTGGGAGGCTGAGATGGGTGGATCACCTGAGGTTGG
1521 GAGTTCGAGACCAGCCTGACAAAACATAGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCGTGGTGGTGG
1601 GTGTCTGTAATCCCAGCTATTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGTGGAGGTTGCAGTGAGCTGA
1681 GATCCTGCCACTGCACTCCAGTCTGGGTGACAGAGCAAGACTCCATCTCAAAAAATAAATAAATAGAAAGAGAGAGAGAG
1761 GAAAAAAAAAGAAAAGAACACTTCTTTATTTGAGGGACTTTCCCAACACCAGGTGCTTGGGGATTTCTTAGAGATCACCA
1841 ACCGACTCCCTCACTGTGAAATTAAACCAAGTACTGGAAACGTAACTAAACAGCGAACCATGTAGCTTCACCTGACTCAG
1921 TGCTGGGGGCCTCTACCATCTACTGTGCTTGTGTCATGATGCTTTTTCTCTGAAGTGGTGTGGGAAGTACCAGGGGACTG
2001 GCAGAAGCCCAGGCCCTCTCTACTTTTACCAGCAACTGATCATGTCTTTCAGAATCCATGTACATATAGGCTGTTCTAGC
2081 CACAGTGGTAGATTTATGATTCACATCCGAAAGTGTGCCTTAGTTATCAATTTAACATTTCTCTAGTATTCATATCCCTT
2161 TTCTTACCATATACCTCAGTGTATCCTTCCTGTGTCAAGCCTTATAAATCATGTAATTTAGTGCCACTCATGTAAATCAG
2241 TAAAATCACAAAGGTCTATTTAATGAAAACGATTTACCAATGTTGTTTTTTTTTAACAAGAAAAAAAATAAAAGCACATT
2321 GTCATTTTTTTTCCTCAGGA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cgUCGGUCGAG--A--UGGGGGCGGu 5'
            :|||| | |  |  | ||||||| 
Target 5' ctGGCCAACACGGTGAAACCCCGCCt 3'
139 - 164 152.00 -20.50
2
miRNA  3' cgucgGUCGAGAUGGGGGCGGu 5'
               :|| |  | |||||:| 
Target 5' aaacaTAG-TGAAACCCCGTCt 3'
1542 - 1562 128.00 -16.30
3
miRNA  3' cgUCGGUCGAGAUGGGGGCGGu 5'
            ||: ||||  : :||:||| 
Target 5' gcAGTGAGCTGAGATCCTGCCa 3'
1669 - 1690 128.00 -25.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN13256870 3 COSMIC
COSM4610850 5 COSMIC
COSN30503671 23 COSMIC
COSN31584492 27 COSMIC
COSN30109049 28 COSMIC
COSN30487304 45 COSMIC
COSN30177746 52 COSMIC
COSN30478125 81 COSMIC
COSN1113378 120 COSMIC
COSN32065374 299 COSMIC
COSN21663119 449 COSMIC
COSN21483656 580 COSMIC
COSN22824568 581 COSMIC
COSN23645358 1273 COSMIC
COSN28201402 1386 COSMIC
COSN20092060 1430 COSMIC
COSN16286453 1516 COSMIC
COSN29886678 1522 COSMIC
COSN17037815 1895 COSMIC
COSN6058736 2184 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1340627888 2 dbSNP
rs559413854 3 dbSNP
rs1296085479 6 dbSNP
rs954671322 7 dbSNP
rs771936698 8 dbSNP
rs1354778000 12 dbSNP
rs1209687300 15 dbSNP
rs772818235 17 dbSNP
rs760678645 22 dbSNP
rs1214762930 26 dbSNP
rs532551107 28 dbSNP
rs1347811365 35 dbSNP
rs776192306 39 dbSNP
rs1195340647 43 dbSNP
rs1410358985 44 dbSNP
rs759016346 46 dbSNP
rs764919928 52 dbSNP
rs1163671883 53 dbSNP
rs763243728 54 dbSNP
rs545897614 55 dbSNP
rs1364416663 56 dbSNP
rs1455477290 57 dbSNP
rs546116931 65 dbSNP
rs1193148149 66 dbSNP
rs562136630 69 dbSNP
rs1487533117 70 dbSNP
rs531084641 72 dbSNP
rs1306926265 73 dbSNP
rs1368190848 75 dbSNP
rs1205437475 76 dbSNP
rs1004028022 82 dbSNP
rs1272849539 84 dbSNP
rs1015411130 90 dbSNP
rs992952239 95 dbSNP
rs1378274981 98 dbSNP
rs1226453649 99 dbSNP
rs550769381 102 dbSNP
rs1322595852 104 dbSNP
rs1227911724 106 dbSNP
rs1364831168 106 dbSNP
rs937504005 115 dbSNP
rs766455954 119 dbSNP
rs148858722 130 dbSNP
rs926189647 134 dbSNP
rs1205876138 138 dbSNP
rs1376043919 139 dbSNP
rs1172899319 140 dbSNP
rs1237473059 142 dbSNP
rs934858411 143 dbSNP
rs1184008256 144 dbSNP
rs1178009574 147 dbSNP
rs539565375 148 dbSNP
rs1449192821 149 dbSNP
rs1047385340 150 dbSNP
rs907562534 154 dbSNP
rs1371049258 156 dbSNP
rs908016452 157 dbSNP
rs944810804 160 dbSNP
rs941940705 161 dbSNP
rs1223845170 162 dbSNP
rs1349554942 167 dbSNP
rs1286043408 185 dbSNP
rs900532634 189 dbSNP
rs1355808571 190 dbSNP
rs995241165 192 dbSNP
rs1390670265 197 dbSNP
rs373447339 202 dbSNP
rs1346890042 215 dbSNP
rs185712864 220 dbSNP
rs900315556 223 dbSNP
rs995967919 225 dbSNP
rs1051586256 228 dbSNP
rs1133226 240 dbSNP
rs1410086812 241 dbSNP
rs1475753881 248 dbSNP
rs566890832 248 dbSNP
rs1445689304 251 dbSNP
rs1304423233 252 dbSNP
rs1010764662 260 dbSNP
rs888380668 264 dbSNP
rs113073877 265 dbSNP
rs1434036124 277 dbSNP
rs969139884 278 dbSNP
rs1215944010 279 dbSNP
rs554895663 280 dbSNP
rs574647687 291 dbSNP
rs190518074 294 dbSNP
rs1015440743 298 dbSNP
rs1335249696 305 dbSNP
rs1000421339 306 dbSNP
rs1311664766 314 dbSNP
rs1367607050 316 dbSNP
rs1394056194 319 dbSNP
rs1364051291 320 dbSNP
rs1289346591 327 dbSNP
rs1434506663 328 dbSNP
rs1229320016 329 dbSNP
rs1457468687 331 dbSNP
rs1215181114 332 dbSNP
rs1245602957 332 dbSNP
rs1264472436 332 dbSNP
rs1420895484 332 dbSNP
rs1464065805 332 dbSNP
rs1468688135 332 dbSNP
rs1491141289 332 dbSNP
rs34911594 332 dbSNP
rs865942040 332 dbSNP
rs386370708 333 dbSNP
rs1308999782 334 dbSNP
rs79174534 334 dbSNP
rs1311007237 335 dbSNP
rs959828832 337 dbSNP
rs1227505697 338 dbSNP
rs1034607486 344 dbSNP
rs558402400 344 dbSNP
rs1212893692 349 dbSNP
rs1355428109 349 dbSNP
rs1168522531 350 dbSNP
rs1257063391 350 dbSNP
rs111710934 351 dbSNP
rs60233844 351 dbSNP
rs1387349035 352 dbSNP
rs1187007833 353 dbSNP
rs186402218 353 dbSNP
rs1245872891 354 dbSNP
rs1266273552 355 dbSNP
rs1450935958 356 dbSNP
rs1207650789 364 dbSNP
rs1023134127 365 dbSNP
rs917458468 366 dbSNP
rs1204175348 369 dbSNP
rs1423824574 371 dbSNP
rs1412217697 378 dbSNP
rs969774176 383 dbSNP
rs1178177665 384 dbSNP
rs970491981 385 dbSNP
rs1456518670 390 dbSNP
rs1318293081 393 dbSNP
rs577038761 395 dbSNP
rs1393303465 398 dbSNP
rs925592779 399 dbSNP
rs143478358 407 dbSNP
rs907512638 412 dbSNP
rs1274435430 413 dbSNP
rs1377839598 416 dbSNP
rs941705597 421 dbSNP
rs1037547603 422 dbSNP
rs1174769636 428 dbSNP
rs921848594 439 dbSNP
rs1365628647 444 dbSNP
rs1466123531 446 dbSNP
rs931934612 447 dbSNP
rs80309553 460 dbSNP
rs988982134 462 dbSNP
rs1252065409 470 dbSNP
rs1181252691 474 dbSNP
rs1481934505 477 dbSNP
rs890308437 479 dbSNP
rs1302606395 481 dbSNP
rs1211449112 486 dbSNP
rs1329065766 491 dbSNP
rs912068397 496 dbSNP
rs1254258769 499 dbSNP
rs1010295929 514 dbSNP
rs1039155897 529 dbSNP
rs1408419418 535 dbSNP
rs564238150 544 dbSNP
rs904486566 545 dbSNP
rs1395885139 549 dbSNP
rs572755670 552 dbSNP
rs1170352342 556 dbSNP
rs1454878950 560 dbSNP
rs930719160 561 dbSNP
rs1157908938 563 dbSNP
rs1471502235 565 dbSNP
rs1259286821 567 dbSNP
rs1000198117 568 dbSNP
rs1188171860 572 dbSNP
rs1441837874 572 dbSNP
rs1216093119 577 dbSNP
rs1253982597 577 dbSNP
rs1329887839 579 dbSNP
rs1267765865 580 dbSNP
rs1245729058 581 dbSNP
rs1337408558 591 dbSNP
rs1294358394 603 dbSNP
rs751766302 608 dbSNP
rs542159606 610 dbSNP
rs1192368831 611 dbSNP
rs761984663 619 dbSNP
rs1014545438 622 dbSNP
rs1419568395 626 dbSNP
rs1024459832 627 dbSNP
rs1429987848 627 dbSNP
rs372312273 630 dbSNP
rs1156746233 640 dbSNP
rs939928634 642 dbSNP
rs562448361 643 dbSNP
rs1036944136 644 dbSNP
rs907625677 646 dbSNP
rs1323150112 651 dbSNP
rs895689788 652 dbSNP
rs1290826918 654 dbSNP
rs963198569 659 dbSNP
rs1303831237 664 dbSNP
rs559592095 671 dbSNP
rs921632364 676 dbSNP
rs1227067071 678 dbSNP
rs1290697858 680 dbSNP
rs1351889601 688 dbSNP
rs1296321850 689 dbSNP
rs1432247620 693 dbSNP
rs190694357 698 dbSNP
rs41298377 699 dbSNP
rs911697601 700 dbSNP
rs182700753 701 dbSNP
rs546649794 702 dbSNP
rs1449498920 706 dbSNP
rs905622179 709 dbSNP
rs945876546 716 dbSNP
rs761017285 717 dbSNP
rs1186806164 723 dbSNP
rs187639201 724 dbSNP
rs1247547974 736 dbSNP
rs1455617207 736 dbSNP
rs904604712 739 dbSNP
rs535890188 740 dbSNP
rs1268954119 743 dbSNP
rs1221049898 745 dbSNP
rs1275476995 746 dbSNP
rs1206311198 758 dbSNP
rs936106483 765 dbSNP
rs1179964346 766 dbSNP
rs1369037276 767 dbSNP
rs1414012232 776 dbSNP
rs1328991424 778 dbSNP
rs572940967 778 dbSNP
rs1330710010 783 dbSNP
rs766662320 786 dbSNP
rs549098190 792 dbSNP
rs1055793811 795 dbSNP
rs1470399785 800 dbSNP
rs894506230 808 dbSNP
rs1166601761 814 dbSNP
rs192827609 821 dbSNP
rs1024990638 822 dbSNP
rs1190837159 828 dbSNP
rs754214460 829 dbSNP
rs755428352 830 dbSNP
rs955670947 831 dbSNP
rs989055586 835 dbSNP
rs1482916317 836 dbSNP
rs537319896 839 dbSNP
rs1004792707 841 dbSNP
rs1370047684 844 dbSNP
rs557214096 851 dbSNP
rs12766360 855 dbSNP
rs141702287 860 dbSNP
rs1028591740 862 dbSNP
rs1218113029 865 dbSNP
rs953059766 871 dbSNP
rs77416574 874 dbSNP
rs147116378 876 dbSNP
rs1410237859 879 dbSNP
rs946022732 883 dbSNP
rs138587229 885 dbSNP
rs930727120 886 dbSNP
rs907911378 896 dbSNP
rs1353882048 899 dbSNP
rs925838964 903 dbSNP
rs1247747185 912 dbSNP
rs756836743 921 dbSNP
rs1410489679 922 dbSNP
rs1292000621 923 dbSNP
rs1479942826 930 dbSNP
rs936054397 941 dbSNP
rs561506911 947 dbSNP
rs1055907637 951 dbSNP
rs1472475744 964 dbSNP
rs1340854517 966 dbSNP
rs529964930 975 dbSNP
rs115013003 979 dbSNP
rs1438322947 980 dbSNP
rs182682870 991 dbSNP
rs1237386496 992 dbSNP
rs1208861986 995 dbSNP
rs1045945042 997 dbSNP
rs887348618 1005 dbSNP
rs1235497025 1013 dbSNP
rs1004496685 1016 dbSNP
rs949969203 1019 dbSNP
rs1328232428 1021 dbSNP
rs1286302559 1028 dbSNP
rs1017500997 1029 dbSNP
rs866666671 1037 dbSNP
rs564350399 1041 dbSNP
rs1164480927 1046 dbSNP
rs1389711474 1047 dbSNP
rs1044638537 1052 dbSNP
rs1302162897 1052 dbSNP
rs1445954438 1058 dbSNP
rs905655758 1064 dbSNP
rs1456974785 1069 dbSNP
rs1410014980 1070 dbSNP
rs1167609052 1080 dbSNP
rs1032713324 1081 dbSNP
rs999908861 1081 dbSNP
rs891499546 1082 dbSNP
rs1009836364 1093 dbSNP
rs898685656 1096 dbSNP
rs1249278763 1108 dbSNP
rs1208808627 1110 dbSNP
rs1464207120 1114 dbSNP
rs1265826567 1119 dbSNP
rs533303313 1121 dbSNP
rs1322059733 1122 dbSNP
rs994515766 1132 dbSNP
rs1028704742 1155 dbSNP
rs1170549649 1165 dbSNP
rs1226469892 1170 dbSNP
rs953008870 1171 dbSNP
rs1298494353 1182 dbSNP
rs1434432747 1185 dbSNP
rs1386773797 1187 dbSNP
rs1295464188 1190 dbSNP
rs1349598579 1217 dbSNP
rs1458751911 1217 dbSNP
rs987538340 1229 dbSNP
rs1018648531 1238 dbSNP
rs1397913691 1246 dbSNP
rs1019220597 1251 dbSNP
rs745584921 1264 dbSNP
rs977392467 1268 dbSNP
rs974985300 1274 dbSNP
rs116642468 1287 dbSNP
rs1488687202 1288 dbSNP
rs952239362 1294 dbSNP
rs1219091087 1314 dbSNP
rs957205353 1317 dbSNP
rs1275224496 1319 dbSNP
rs991537117 1320 dbSNP
rs907942350 1321 dbSNP
rs916000694 1325 dbSNP
rs940701411 1342 dbSNP
rs560675850 1349 dbSNP
rs1046131216 1359 dbSNP
rs908563254 1360 dbSNP
rs529353023 1371 dbSNP
rs549384973 1372 dbSNP
rs1038629596 1374 dbSNP
rs1252526622 1381 dbSNP
rs992173155 1384 dbSNP
rs1371759190 1388 dbSNP
rs1168467343 1391 dbSNP
rs1428566227 1406 dbSNP
rs1370786110 1409 dbSNP
rs1200365421 1414 dbSNP
rs1433468800 1424 dbSNP
rs528486152 1430 dbSNP
rs1197059057 1438 dbSNP
rs1483889377 1442 dbSNP
rs1252476024 1447 dbSNP
rs1204276759 1454 dbSNP
rs996971021 1455 dbSNP
rs548525230 1456 dbSNP
rs779941180 1460 dbSNP
rs548428584 1461 dbSNP
rs1311885287 1462 dbSNP
rs973596656 1466 dbSNP
rs1008677271 1467 dbSNP
rs768438720 1468 dbSNP
rs1183909924 1469 dbSNP
rs1044284809 1471 dbSNP
rs1247704186 1482 dbSNP
rs7900468 1499 dbSNP
rs999152195 1506 dbSNP
rs761778726 1511 dbSNP
rs935832919 1514 dbSNP
rs1054154659 1516 dbSNP
rs1466076574 1517 dbSNP
rs28585023 1521 dbSNP
rs58494048 1524 dbSNP
rs1473456723 1528 dbSNP
rs749832886 1532 dbSNP
rs1436069688 1533 dbSNP
rs1404912381 1539 dbSNP
rs138708022 1542 dbSNP
rs370151891 1547 dbSNP
rs971868625 1548 dbSNP
rs981568071 1552 dbSNP
rs566592507 1557 dbSNP
rs544440315 1559 dbSNP
rs535175330 1560 dbSNP
rs149381481 1566 dbSNP
rs920173335 1576 dbSNP
rs932936915 1588 dbSNP
rs1273019862 1591 dbSNP
rs374481185 1592 dbSNP
rs891319368 1595 dbSNP
rs1334285663 1602 dbSNP
rs192323392 1608 dbSNP
rs1412239740 1617 dbSNP
rs544508052 1621 dbSNP
rs558077017 1623 dbSNP
rs1468385224 1624 dbSNP
rs1267223701 1627 dbSNP
rs577908048 1627 dbSNP
rs540855660 1628 dbSNP
rs560498800 1631 dbSNP
rs902814327 1633 dbSNP
rs1188109182 1642 dbSNP
rs529409172 1645 dbSNP
rs1241283763 1652 dbSNP
rs542718447 1655 dbSNP
rs9329336 1656 dbSNP
rs184862024 1658 dbSNP
rs957267702 1660 dbSNP
rs190759671 1662 dbSNP
rs1285312509 1663 dbSNP
rs1012861658 1667 dbSNP
rs1196833211 1669 dbSNP
rs1432173856 1671 dbSNP
rs1388979338 1685 dbSNP
rs1319428518 1686 dbSNP
rs1398761492 1687 dbSNP
rs1392545352 1690 dbSNP
rs992204536 1692 dbSNP
rs1457406645 1693 dbSNP
rs1022780104 1712 dbSNP
rs1190639594 1713 dbSNP
rs1481033707 1716 dbSNP
rs917917626 1721 dbSNP
rs1247667085 1723 dbSNP
rs1191225020 1724 dbSNP
rs759930081 1731 dbSNP
rs1291120696 1733 dbSNP
rs969406867 1733 dbSNP
rs1158958205 1742 dbSNP
rs1410240179 1745 dbSNP
rs1230021949 1749 dbSNP
rs1277361992 1749 dbSNP
rs1459115881 1757 dbSNP
rs1290267385 1759 dbSNP
rs1385150261 1761 dbSNP
rs980464915 1762 dbSNP
rs971267973 1763 dbSNP
rs1332461235 1767 dbSNP
rs935863867 1767 dbSNP
rs1324020072 1770 dbSNP
rs1404516384 1772 dbSNP
rs1321005850 1773 dbSNP
rs1363671252 1775 dbSNP
rs1170356661 1782 dbSNP
rs765636446 1783 dbSNP
rs1389556241 1786 dbSNP
rs1166223411 1792 dbSNP
rs149981704 1794 dbSNP
rs1015678939 1808 dbSNP
rs961797373 1813 dbSNP
rs1247490083 1815 dbSNP
rs913030644 1824 dbSNP
rs1489951518 1830 dbSNP
rs1287606707 1833 dbSNP
rs1342261144 1844 dbSNP
rs945810059 1845 dbSNP
rs1240851035 1848 dbSNP
rs1040117652 1856 dbSNP
rs1275032770 1870 dbSNP
rs1261596931 1872 dbSNP
rs753303576 1882 dbSNP
rs1343346602 1883 dbSNP
rs901546941 1884 dbSNP
rs1410423407 1889 dbSNP
rs756715047 1895 dbSNP
rs1488278764 1896 dbSNP
rs41306808 1900 dbSNP
rs1426180556 1902 dbSNP
rs985695941 1913 dbSNP
rs912695822 1917 dbSNP
rs570796387 1924 dbSNP
rs114245461 1930 dbSNP
rs75247123 1932 dbSNP
rs962170459 1934 dbSNP
rs1250155735 1936 dbSNP
rs566516465 1937 dbSNP
rs1014119793 1939 dbSNP
rs1160271085 1942 dbSNP
rs1228753012 1948 dbSNP
rs1372578029 1954 dbSNP
rs1364082522 1957 dbSNP
rs397940621 1963 dbSNP
rs58931718 1963 dbSNP
rs1450329315 1975 dbSNP
rs969815980 1978 dbSNP
rs934439993 1993 dbSNP
rs980782018 1994 dbSNP
rs535547526 2011 dbSNP
rs1468496598 2012 dbSNP
rs1391091835 2021 dbSNP
rs1160437599 2024 dbSNP
rs1457067406 2030 dbSNP
rs1161000791 2034 dbSNP
rs1054103482 2037 dbSNP
rs892824241 2041 dbSNP
rs1473496419 2042 dbSNP
rs1012811103 2044 dbSNP
rs1202465642 2048 dbSNP
rs1459738486 2057 dbSNP
rs1269592655 2061 dbSNP
rs1404961039 2064 dbSNP
rs1307356423 2065 dbSNP
rs749968143 2066 dbSNP
rs1348543422 2067 dbSNP
rs555123426 2068 dbSNP
rs142266606 2073 dbSNP
rs1304807431 2074 dbSNP
rs1241917285 2077 dbSNP
rs1307407874 2087 dbSNP
rs957300546 2088 dbSNP
rs1314530781 2095 dbSNP
rs748696841 2105 dbSNP
rs989993285 2108 dbSNP
rs1294169374 2109 dbSNP
rs1321407895 2119 dbSNP
rs1453512550 2135 dbSNP
rs1360260486 2140 dbSNP
rs1002705487 2149 dbSNP
rs1204447935 2150 dbSNP
rs12573300 2152 dbSNP
rs1413672217 2153 dbSNP
rs1481903776 2173 dbSNP
rs537488762 2175 dbSNP
rs976262238 2184 dbSNP
rs1249534967 2209 dbSNP
rs1255877300 2212 dbSNP
rs1422394441 2216 dbSNP
rs974152682 2229 dbSNP
rs568016028 2230 dbSNP
rs796826711 2232 dbSNP
rs1050116440 2240 dbSNP
rs1223479294 2254 dbSNP
rs1424812262 2255 dbSNP
rs954060534 2256 dbSNP
rs887402685 2260 dbSNP
rs148457007 2266 dbSNP
rs577945559 2267 dbSNP
rs944327978 2271 dbSNP
rs754854502 2281 dbSNP
rs898035081 2281 dbSNP
rs1298633982 2285 dbSNP
rs1360113851 2285 dbSNP
rs1013734109 2286 dbSNP
rs1025508122 2286 dbSNP
rs74928539 2297 dbSNP
rs552839648 2301 dbSNP
rs1317439304 2306 dbSNP
rs540541437 2317 dbSNP
rs554358426 2320 dbSNP
rs193124158 2321 dbSNP
rs934373867 2323 dbSNP
rs1170534156 2324 dbSNP
rs1427617038 2324 dbSNP
rs1259207260 2325 dbSNP
rs778706082 2325 dbSNP
rs1192747806 2326 dbSNP
rs184308961 2327 dbSNP
rs1268111659 2333 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084081. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_SantaCruzAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' cgucggucgagauggggGCGGu 5'
                           |||| 
Target 5' -----------------CGCCc 3'
1 - 5
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084081
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_SantaCruzAb
Location of target site ENST00000263035.4 | 3UTR | CGCCCAAAAAAAAAAAAAAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
90 hsa-miR-6787-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT449091 XPO6 exportin 6 2 2
MIRT449991 PSMG1 proteasome assembly chaperone 1 2 2
MIRT454608 MYADM myeloid associated differentiation marker 2 2
MIRT456116 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT457064 TOR4A torsin family 4 member A 2 2
MIRT461023 SDF4 stromal cell derived factor 4 2 2
MIRT467197 SPRY4 sprouty RTK signaling antagonist 4 2 2
MIRT471711 OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 2 2
MIRT472566 NACC1 nucleus accumbens associated 1 2 2
MIRT476079 GRB2 growth factor receptor bound protein 2 2 2
MIRT480150 CALR calreticulin 2 2
MIRT483027 KHSRP KH-type splicing regulatory protein 2 4
MIRT483498 STMN3 stathmin 3 2 4
MIRT483728 THSD4 thrombospondin type 1 domain containing 4 2 2
MIRT484550 BARHL1 BarH like homeobox 1 2 6
MIRT484684 PACSIN1 protein kinase C and casein kinase substrate in neurons 1 2 2
MIRT486059 CTDNEP1 CTD nuclear envelope phosphatase 1 2 2
MIRT486116 INO80E INO80 complex subunit E 2 2
MIRT486313 SIPA1 signal-induced proliferation-associated 1 2 2
MIRT486525 CLCN7 chloride voltage-gated channel 7 2 2
MIRT486857 DPF1 double PHD fingers 1 2 2
MIRT487352 PHF15 jade family PHD finger 2 1 1
MIRT487582 FAM83H family with sequence similarity 83 member H 2 4
MIRT487792 GPR20 G protein-coupled receptor 20 2 4
MIRT488104 POU3F1 POU class 3 homeobox 1 2 2
MIRT488786 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT489361 SYNGR1 synaptogyrin 1 2 4
MIRT489387 RAB11B RAB11B, member RAS oncogene family 2 2
MIRT489680 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT489731 GNAI2 G protein subunit alpha i2 2 4
MIRT489750 TACC3 transforming acidic coiled-coil containing protein 3 2 2
MIRT490029 PCSK4 proprotein convertase subtilisin/kexin type 4 2 2
MIRT490379 LHFPL3 LHFPL tetraspan subfamily member 3 2 2
MIRT490580 SLC47A1 solute carrier family 47 member 1 2 2
MIRT490753 SRCIN1 SRC kinase signaling inhibitor 1 2 2
MIRT491187 JUND JunD proto-oncogene, AP-1 transcription factor subunit 2 4
MIRT491301 VGF VGF nerve growth factor inducible 2 2
MIRT491462 HOXB8 homeobox B8 2 2
MIRT491702 PDZD4 PDZ domain containing 4 2 2
MIRT491724 RTN4R reticulon 4 receptor 2 2
MIRT491737 SEMA3F semaphorin 3F 2 2
MIRT491984 UNK unkempt family zinc finger 2 2
MIRT492844 NRGN neurogranin 2 2
MIRT492936 NEUROD2 neuronal differentiation 2 2 4
MIRT493713 H2AFX H2A histone family member X 2 2
MIRT494623 ASB6 ankyrin repeat and SOCS box containing 6 2 4
MIRT494703 ARHGAP31 Rho GTPase activating protein 31 2 2
MIRT495602 NKX2-5 NK2 homeobox 5 2 2
MIRT495750 PDE4C phosphodiesterase 4C 2 4
MIRT500367 ZNF385A zinc finger protein 385A 2 2
MIRT501161 SLC10A7 solute carrier family 10 member 7 2 6
MIRT501702 PCGF3 polycomb group ring finger 3 2 6
MIRT504922 PDRG1 p53 and DNA damage regulated 1 2 2
MIRT517945 TRIM59 tripartite motif containing 59 2 2
MIRT524212 DDI2 DNA damage inducible 1 homolog 2 2 6
MIRT531186 SIGLEC12 sialic acid binding Ig like lectin 12 (gene/pseudogene) 2 2
MIRT531972 C12orf49 chromosome 12 open reading frame 49 2 2
MIRT558055 EVI5L ecotropic viral integration site 5 like 2 2
MIRT560482 LACE1 AFG1 like ATPase 2 2
MIRT563217 FXN frataxin 2 2
MIRT569095 FSCN1 fascin actin-bundling protein 1 2 2
MIRT569522 AP5Z1 adaptor related protein complex 5 zeta 1 subunit 2 2
MIRT569531 CTTN cortactin 2 2
MIRT569848 RGS5 regulator of G protein signaling 5 2 2
MIRT570738 ANKRD52 ankyrin repeat domain 52 2 2
MIRT574140 MARVELD1 MARVEL domain containing 1 2 2
MIRT615994 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT628493 ZNF556 zinc finger protein 556 2 2
MIRT633451 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT649054 SLC1A2 solute carrier family 1 member 2 2 2
MIRT649340 HEXA hexosaminidase subunit alpha 2 2
MIRT670226 PTCHD1 patched domain containing 1 2 2
MIRT670666 KIAA1551 KIAA1551 2 2
MIRT671452 CDH7 cadherin 7 2 2
MIRT671729 ZNF451 zinc finger protein 451 2 2
MIRT690285 ZNF154 zinc finger protein 154 2 2
MIRT700575 PRSS22 protease, serine 22 2 2
MIRT701411 NKRF NFKB repressing factor 2 2
MIRT711877 VASP vasodilator stimulated phosphoprotein 2 2
MIRT712082 UNC13A unc-13 homolog A 2 2
MIRT712523 CYTH2 cytohesin 2 2 2
MIRT712751 GMDS GDP-mannose 4,6-dehydratase 2 2
MIRT714681 PRX periaxin 2 2
MIRT714718 VPS8 VPS8, CORVET complex subunit 2 2
MIRT717508 HRNR hornerin 2 2
MIRT717650 THBS2 thrombospondin 2 2 2
MIRT719592 PIAS4 protein inhibitor of activated STAT 4 2 2
MIRT720521 PTGR2 prostaglandin reductase 2 2 2
MIRT721295 C3orf36 chromosome 3 open reading frame 36 2 2
MIRT724922 VPS18 VPS18, CORVET/HOPS core subunit 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-6787 Ceritinib 57379345 NSC776422 approved sensitive High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-6787-5p Dabrafenib 44462760 NSC764134 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-6787-5p Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-6787-5p Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-6787-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-6787-5p Tamoxifen 2733525 NSC180973 approved sensitive cell line (LCC2)
hsa-miR-6787-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-6787-5p Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-6787-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-miR-6787-5p Docetaxel+Cisplatin+5-Fluorouracil resistant tissue (hypopharyngeal squamous cell carcinoma)

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