pre-miRNA Information
pre-miRNA hsa-mir-548t   
Genomic Coordinates chr4: 173268160 - 173268233
Description Homo sapiens miR-548t stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548t-3p
Sequence 46| AAAAACCACAAUUACUUUUGCACCA |70
Evidence Not_experimental
Experiments
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 2 4 + 173268206 29233923 MiREDiBase
A-to-I 3 4 + 173268207 29233923 MiREDiBase
A-to-I 4 4 + 173268208 29233923 MiREDiBase
A-to-I 10 4 + 173268214 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs73872515 5 dbSNP
rs1426966747 6 dbSNP
rs1158401109 21 dbSNP
rs943938928 24 dbSNP
Putative Targets

Gene Information
Gene Symbol PTPN11   
Synonyms BPTP3, CFC, JMML, METCDS, NS1, PTP-1D, PTP2C, SH-PTP2, SH-PTP3, SHP2
Description protein tyrosine phosphatase, non-receptor type 11
Transcript NM_002834   
Expression
Putative miRNA Targets on PTPN11
3'UTR of PTPN11
(miRNA target sites are highlighted)
>PTPN11|NM_002834|3'UTR
   1 GAAAACCTGCCAAAACTTCAGCACAGAAATAGATGTGGACTTTCACCCTCTCCCTAAAAAGATCAAGAACAGACGCAAGA
  81 AAGTTTATGTGAAGACAGAATTTGGATTTGGAAGGCTTGCAATGTGGTTGACTACCTTTTGATAAGCAAAATTTGAAACC
 161 ATTTAAAGACCACTGTATTTTAACTCAACAATACCTGCTTCCCAATTACTCATTTCCTCAGATAAGAAGAAATCATCTCT
 241 ACAATGTAGACAACATTATATTTTATAGAATTTGTTTGAAATTGAGGAAGCAGTTAAATTGTGCGCTGTATTTTGCAGAT
 321 TATGGGGATTCAAATTCTAGTAATAGGCTTTTTTATTTTTATTTTTATACCCTTAACCAGTTTAATTTTTTTTTTCCTCA
 401 TTGTTGGGGATGATGAGAAGAAATGATTTGGGAAAATTAAGTAACAACGACCTAGAAAAGTGAGAACAATCTCATTTACC
 481 ATCATGTATCCAGTAGTGGATAATTCATTTTGATGGCTTCTATTTTTGGCCAAATGAGAATTAAGCCAGTGCCTGAGACT
 561 GTCAGAAGTTGACCTTTGCACTGGCATTAAAGAGTCATAGAAAAAGAATCATGGATATTTATGAATTAAGGTAAGAGGTG
 641 TGGCTTTTTTTTTTTTCTTTTTTCCAGCCGTTGACCAATTATAGTTCGGCTGTTGACTGAGAAGTTTGTGGTGGGAAAAC
 721 GTTTGCCATATTTTCTTTGCATTTGAATAATTGTCTTGTACTTAGAAAAAAGGCGTCTATGAATGACCAGTGTTTTTGGT
 801 CGCCAAATGTTGCTGACAAACTTATCCCAAAACTTTAGTGGCTTAAAAAAACCTGCCCCCAACTGTTAGTCAATCTGAGC
 881 TGGGCTCAGCTGGGCTGTTCTTCTGCCAGCCTGCAGGTGGCCACTCATGTGGTCAGCAGGTCGGCGGAGAGACTGGGATG
 961 GCTGGGCTTCTCTCTCTGCCTGCAGTCCTGAGTCTCTCCTTCTTCGTGTAGTCTCTTTCAGTGGCCTGGCTGGCAGGGTA
1041 GCTAGACCTCTCACATGCAGCTCAGAGCTCCCAAGAGCTCAAAAGCAGAAATGGCCAGGCCTTCTGAAAACTTAAGTCCA
1121 GAATTGTCACAGTGTCCCTTCTACTTCCCTCTATTGATGATGATGATGATGATGATGATGATGATGATGATGATGATGAT
1201 GGTTTTTTCTAATCAGAAGAAAGCTGGGGTATGCCCTCTACTTACTAAACAAGTCACAAGCCCAGCTCAGATTCAAGAAA
1281 AGGGTGTGAAGTAGAGGTGCAGTTAAGTGGGGGGCCACTAGTCTAACAGACGGTCACAACCAGTGCCATGGAAAACCAAG
1361 GATATTAGCAAAAGCAGAAGTTGCTAGTGACCTTGGGAAGCCGAAGCTGCTTACAGTAGCTGGGACAAGCTGAAAGTCAG
1441 ACTAAGAAATAAAGAGAGGGCCTTCAAGAAGCTTCCTGAATGATTTCTGCTAGCCCTGAGCCTATTTTTGGAACCAGCAC
1521 TTGGGGAAACTGATCTTGTGAGGATGGATGTGTTTAGGGACACAGGGCTTTTGAGAGCAGCACCACCCCACTGGGGCATC
1601 CCCAGACTTGGGAAACGTGACTCTTTCTTAATGCCACTGGGTTTTAGTCAGGCCACAGTGAGAAGGAACAGCCCTAACAG
1681 GCCTCCAGCCAGGTTGAATGAGCTCATTTTTGTTGTAGCCAACCAGTAAGATTTGCTAATGTTCTACATTAAGTGCCTTC
1761 TCCAAAGACATCCCTCTTTGCCTCATATGTTGAATCATCCAGTGCGGATATTTCAATGAAAATATCATTGGTTGACTTTT
1841 GTGATGGTAATAATGCTATGGCATCTTTGCCATGAAGTTGTGGCCTCCTTGGATTCTTCTGACTTTGGCTTCTGAAAGGA
1921 AGGCCTAGATCCAGCCCTGGTGGTAGTTCCTTTCTGAGGTCTCTCAGTCCCTTGAGACTTTGGGGTAGTTTGGCTGCCAT
2001 TCTCACTGACAAAATGTATATCAGCCCCCACCTCCACCCCCCAATATTCCTTGAACTTTGAATTGCTTCAGAACACAGGT
2081 GTGGCCTGAAGGTATTCCCTTATTAGGGAAGTGTCACTGCTGTCTTCTAGTCAAACTTGTAAAGAAAAAGATTCCAGTTC
2161 AGTATTTGCAGCAAGAAGCTTGAATGCTGTTCTTTTTATCGCATTGTTACATCGACTCATTCTCCATTTTGCTTTGGTTT
2241 TGTCTTGACTTGACTTGACTTTGGGGGTAAAGTCTTTCACCAGCACACAAGAGTTTGATTGTACAAATATATCTTCTGCA
2321 TTAACATCTCTGCCTGTTGCTTAAGATCAGTTGCTTTTATACTCAGAATGGAAATACCTGATCTTGGCTAGTTTTGTTAT
2401 AAGATATTGATTTCATTTAGATTTCCCTCCACGAGGTCAGCAAACTATCATGTTCTTATGTAAACTTAGGCCAAGGCCAG
2481 AGTTATCATAGTCCCTAGGTTGCTACGGCTTATCATGTGCTTGGTAAAAGGTGATCGCAGGTTCTCAGACGAGTTTACTT
2561 TACATGAGATGGAATCAGGCAGAGAGGCTGGGATGATGGAGAAAGCTCGAGGTGAAGTTTTAAAAAAAAAGTTGTGGAAA
2641 GGAAAGTTCCAAAGAGGTGGTTTCTGAGGAAGTCAGAGCGCCCAGGGCCAGAGCAGTCAGTAATGGGTGAATGAGGTTGT
2721 TTGGAAAGTCGGTGTGACAGACACATGGATGCCATCTACTTCTAGGTTGCTGGTGGGTATTAAATATGCACAATATTCCA
2801 TAGCTCACTGAGGATTTTAAAATTATAAGCATAGGATTTTATATTTTGGGGTGAAAGAATTATCTGGCACATTAGGTATT
2881 GGAGTTTAAAAAAAAAGCCAAATTTCACAGTCTTAATAACTTTTTTTAAAAAAAACTAAAAGGCGCTTCATGTCCAGTGT
2961 GTGGCCCTTCTGAAACTTATGGTCATCTCTCCCACTGAAACCAAGGTCTTTTCAAATGTGGCTAAATGGGGATGAGGAGA
3041 CACGGGTAGGACTTTCTTGGTGTGTGTGCATTCTTTAAAGAGCCAAGTTGCTTCGGGGAAACAGCCAGGAAAATGGTCAA
3121 GATTATTTTTAGAGGTTATTTTATTGGGGATTTTAAGAACTAATAACATCTTGAGTTATTTTTAATTCAGGGGGATGTGG
3201 AAAGGTTTGCAATTGTCAAGTGTTTTGTTGTAGCTTAGTATCCATAAGGGAAACTTAGACTATAGACATAACTACAAAGC
3281 CAGTGCAGCTTTTGTTTTCTGTATGTTGTTGGGGGATCAACTTTCACACATAGCAAGCACATGGCCTCCCTGATGTCAGG
3361 ATGCCTTTGTTAGGATCTGTATTTGCCCTTAATTTTGTTGAAATCTTTTTTCCTTCTTCCTCTTGAAAAGTTCCAAAATA
3441 TAGTTTATTGTATCTTTCATCACTAAAAATTTGTTCCTTTTTCACTATGGGCAGTTCACACAAGGCAAAAACTATTGAAC
3521 AGTTGGTTTTAGTGTGTTGTATAACTTTGCTGTATATCAAACTAATTTTGACAAGTTTTCATCCTAAGCCTCAAATCATG
3601 TAATTAATAATTTGCCTGTTTATTTATGACCTAATTGTGATTCTTTTATTAATAAAAGCTAATGGGAAAAGGATCCCTGA
3681 TTAAGCTGATGACTAGACCTACAATTAATTTTCCTGCAGTATATGAAGTATTGTACCAGAGTATTAAAAGATATGTAATA
3761 TTTTATTGATAAATCTATCCTTTAAAAGGAATACGTTTTAGGATGTCATCATTTTGATGTGAATCATGTAAATGTTGATA
3841 ATATGCTGTTTATTATACATTTAGTGTTTCAAGAGATTCACTTAATTGCCTTTTTGCCCACGTATATTATGTAGTCTATT
3921 TGCAACTGTTCTTAAAAAAATGACATTAAAAGAATAGTTTATGTAGAGAAACATTAGTGGATGTTAATTGTCTCCCCACC
4001 TATATTTATGGGTGTTAGCGCAACTGCTTTGCTAGTTGCAAAGCTGTATTATCAGAGTAAAAGTGTATTTGTAAACTGTA
4081 TGGGAACTAAAAATTAGGAATAAAACCATTTTCTTATATGATGGCAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' accaCGUUUUCAUUAAC------ACCAAAAa 5'
              ||||||   ||||      ||||||| 
Target 5' caagGCAAAAACTATTGAACAGTTGGTTTTa 3'
3501 - 3531 163.00 -10.10
2
miRNA  3' accAC-GUUUUCAUUAACACCAAAAa 5'
             || ::| : |:||  ||||||| 
Target 5' tgaTGATGATGATGATGATGGTTTTt 3'
1182 - 1207 154.00 -7.80
3
miRNA  3' acCACGUUUUCAUU-AA--------CACCAAAaa 5'
            ||| |||:| || ||        |||||||  
Target 5' ttGTGGAAAGGAAAGTTCCAAAGAGGTGGTTTct 3'
2632 - 2665 145.00 -13.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
1205792 7 ClinVar
138844 14 ClinVar
1198173 300 ClinVar
1203869 893 ClinVar
181493 1040 ClinVar
307227 1067 ClinVar
138845 1079 ClinVar
880940 1093 ClinVar
307228 1354 ClinVar
307229 1358 ClinVar
882568 1503 ClinVar
307230 1673 ClinVar
307231 1699 ClinVar
882569 1702 ClinVar
883350 1711 ClinVar
883351 1713 ClinVar
307232 1716 ClinVar
880986 1749 ClinVar
307233 1769 ClinVar
307234 1804 ClinVar
882349 1828 ClinVar
882350 1830 ClinVar
882617 1831 ClinVar
307235 1867 ClinVar
307236 2034 ClinVar
307237 2044 ClinVar
307238 2064 ClinVar
883395 2067 ClinVar
307239 2183 ClinVar
307240 2183 ClinVar
307241 2183 ClinVar
307242 2183 ClinVar
307243 2361 ClinVar
307244 2403 ClinVar
881046 2448 ClinVar
881504 2549 ClinVar
307245 2565 ClinVar
307246 2565 ClinVar
307247 2617 ClinVar
882664 2645 ClinVar
307248 2758 ClinVar
307249 2834 ClinVar
307250 2835 ClinVar
881085 2859 ClinVar
307251 2975 ClinVar
881086 3107 ClinVar
881550 3125 ClinVar
881551 3179 ClinVar
882713 3208 ClinVar
307252 3522 ClinVar
307253 3569 ClinVar
883488 3637 ClinVar
883489 3658 ClinVar
307254 3760 ClinVar
881125 3851 ClinVar
307255 3936 ClinVar
307256 3956 ClinVar
307257 3957 ClinVar
307258 4035 ClinVar
307259 4072 ClinVar
307260 4260 ClinVar
307261 4273 ClinVar
307262 4329 ClinVar
307263 4410 ClinVar
307264 4749 ClinVar
881174 5000 ClinVar
307265 5048 ClinVar
COSN31574183 27 COSMIC
COSN31786600 35 COSMIC
COSN23023574 39 COSMIC
COSN30616419 162 COSMIC
COSN5712645 574 COSMIC
COSN28455837 1152 COSMIC
COSN21872362 1250 COSMIC
COSN26461395 1337 COSMIC
COSN16735991 1388 COSMIC
COSN28484684 1424 COSMIC
COSN1557645 1497 COSMIC
COSN7310462 1527 COSMIC
COSN24524513 1673 COSMIC
COSN17075917 1804 COSMIC
COSN23719493 2182 COSMIC
COSN24332093 2184 COSMIC
COSN14845190 2484 COSMIC
COSN26584079 3229 COSMIC
COSN30384536 3230 COSMIC
COSN22198882 3234 COSMIC
COSN26567586 3357 COSMIC
COSN26774231 3634 COSMIC
COSN27722447 3916 COSMIC
COSN8695028 3935 COSMIC
COSN26723367 3956 COSMIC
COSN17076006 4257 COSMIC
COSN17255267 4378 COSMIC
COSN7310463 4512 COSMIC
COSN31532270 4733 COSMIC
COSN15661441 4748 COSMIC
COSN26668645 4823 COSMIC
COSN31534390 4836 COSMIC
COSN26669209 4883 COSMIC
COSN5930615 4888 COSMIC
COSN20110133 4895 COSMIC
COSN26665486 4931 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs773953867 2 dbSNP
rs960076404 5 dbSNP
rs1255500865 6 dbSNP
rs201957261 14 dbSNP
rs761625067 17 dbSNP
rs927329280 30 dbSNP
rs764960028 34 dbSNP
rs1271851607 44 dbSNP
rs1471287834 49 dbSNP
rs773173788 51 dbSNP
rs1022959493 55 dbSNP
rs970409264 73 dbSNP
rs938869265 87 dbSNP
rs1389945639 91 dbSNP
rs1372881314 93 dbSNP
rs779076824 99 dbSNP
rs973325601 100 dbSNP
rs1442864754 130 dbSNP
rs138388665 148 dbSNP
rs920484998 151 dbSNP
rs950544811 154 dbSNP
rs1454229018 165 dbSNP
rs1168517827 166 dbSNP
rs17849094 179 dbSNP
rs1156311645 187 dbSNP
rs1417932429 191 dbSNP
rs913505141 204 dbSNP
rs571561082 212 dbSNP
rs1195059242 214 dbSNP
rs1470134036 215 dbSNP
rs1251485874 216 dbSNP
rs1213670699 236 dbSNP
rs538875903 241 dbSNP
rs946262013 242 dbSNP
rs745971287 245 dbSNP
rs983242713 255 dbSNP
rs1236993465 257 dbSNP
rs1042771722 260 dbSNP
rs904180516 266 dbSNP
rs944430615 271 dbSNP
rs553993300 279 dbSNP
rs566999169 280 dbSNP
rs117179247 289 dbSNP
rs1382777175 295 dbSNP
rs76662479 300 dbSNP
rs1286987003 305 dbSNP
rs1452454686 313 dbSNP
rs1375478846 314 dbSNP
rs900891168 340 dbSNP
rs998047284 341 dbSNP
rs573931716 358 dbSNP
rs951331097 363 dbSNP
rs1429428503 367 dbSNP
rs1005419000 368 dbSNP
rs1203864270 373 dbSNP
rs1485609940 385 dbSNP
rs1053216251 395 dbSNP
rs537849007 419 dbSNP
rs1213363185 420 dbSNP
rs1285828428 436 dbSNP
rs1324894829 443 dbSNP
rs574061246 445 dbSNP
rs895940441 448 dbSNP
rs556856839 456 dbSNP
rs1016259523 471 dbSNP
rs1327928622 475 dbSNP
rs577902243 487 dbSNP
rs1261687657 488 dbSNP
rs1375570362 496 dbSNP
rs1353240392 497 dbSNP
rs545226397 499 dbSNP
rs540160105 500 dbSNP
rs560287504 501 dbSNP
rs1374476674 505 dbSNP
rs1168088131 507 dbSNP
rs867901220 509 dbSNP
rs970102621 521 dbSNP
rs963349484 522 dbSNP
rs1191728634 535 dbSNP
rs980474755 536 dbSNP
rs1190162410 537 dbSNP
rs995218204 538 dbSNP
rs769282173 550 dbSNP
rs868377232 552 dbSNP
rs369318568 560 dbSNP
rs371041117 564 dbSNP
rs983316970 565 dbSNP
rs993034897 619 dbSNP
rs1226674537 624 dbSNP
rs1294978941 627 dbSNP
rs913389455 629 dbSNP
rs2051801 630 dbSNP
rs974535130 635 dbSNP
rs1392751043 640 dbSNP
rs1399161713 641 dbSNP
rs772693131 646 dbSNP
rs545718815 655 dbSNP
rs926159458 667 dbSNP
rs1465373282 669 dbSNP
rs531380870 678 dbSNP
rs549500262 679 dbSNP
rs946410035 683 dbSNP
rs762697911 685 dbSNP
rs1304446896 686 dbSNP
rs12317018 701 dbSNP
rs1404916137 702 dbSNP
rs1197783694 709 dbSNP
rs926248541 717 dbSNP
rs1281896721 724 dbSNP
rs866391298 728 dbSNP
rs934908958 740 dbSNP
rs773891629 741 dbSNP
rs369566619 749 dbSNP
rs1260437671 760 dbSNP
rs1333581137 769 dbSNP
rs933723921 770 dbSNP
rs112732885 773 dbSNP
rs1453534172 778 dbSNP
rs1333630195 779 dbSNP
rs1327702547 780 dbSNP
rs1014814319 782 dbSNP
rs1224942791 788 dbSNP
rs886941266 795 dbSNP
rs1328563199 802 dbSNP
rs1005301316 828 dbSNP
rs767441189 829 dbSNP
rs1198660260 835 dbSNP
rs1265173791 838 dbSNP
rs905909853 842 dbSNP
rs531740386 845 dbSNP
rs905077894 846 dbSNP
rs140467277 848 dbSNP
rs1034745493 849 dbSNP
rs1437461723 850 dbSNP
rs562077173 851 dbSNP
rs1211804060 854 dbSNP
rs993312746 862 dbSNP
rs1020502842 863 dbSNP
rs1284790170 864 dbSNP
rs750032375 864 dbSNP