pre-miRNA Information
pre-miRNA hsa-mir-4291   
Genomic Coordinates chr9: 93819357 - 93819421
Description Homo sapiens miR-4291 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4291
Sequence 11| UUCAGCAGGAACAGCU |26
Evidence Experimental
Experiments SOLiD
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1265713434 9 dbSNP
rs1433969451 12 dbSNP
rs1372852268 16 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol FEM1B   
Synonyms F1A-ALPHA, F1AA, FEM1-beta
Description fem-1 homolog B
Transcript NM_015322   
Expression
Putative miRNA Targets on FEM1B
3'UTR of FEM1B
(miRNA target sites are highlighted)
>FEM1B|NM_015322|3'UTR
   1 GTGACTGGATATGTAAAGTCGTTTAATGTGGTGCTAAAAAGTAAAGGACTTTTAATCACAGACAGTAGAATTATGTGTTC
  81 ATAAATTCTGCTTTTCTTTCCACTACCCTTCCTCCCATCCCATCCTTCCTTAGTTCTGTATTTGTTTTTCTTGCCTCATG
 161 GTAATTGATTTCAGACAGACTTTAACAAAACCACATTGTTTTGGTGTAACTATAAGGTATTTGCATATTGGTTACCTATT
 241 TGTCTTTCTTTTTTTTAAAGGAACAGATATAAAATGTTTTGTTTATGTAACAAGGGACATTTATAATTTCAAGTTGATAA
 321 TGTTTTAAACAGCTGCTTACAAAAGTATTTCTGTTAAGCCTATGTCAGCATGTTATCCATGCAGCAGTTTTGAGGATTTT
 401 ATGAAGAAAAAGAGCTAAAAAGGAACATTAAGAGGAATGGGATATCCAGGTGTTCTGCACATGCCAAACTGCTGTAGATA
 481 GTTTACACTCTTCCATTATTTATACGGAGTGATGCAGCACATTTTAGCATTCAGGAGGATTTTTAAAAAATAGCTGCAGA
 561 TTAATCTGGAAAATGTGCTAATTTAATAATAGTTACAAATTTATAAATTTAAATCCATTTGAAATTGTTGCATTATGCTG
 641 GGTAGTATATACAAAATGGTTATCATCTTAAACCAACTTTTCAGAGAATCTTGATGGACTCTGCCTTTAGGCTTGAATTC
 721 TTCAAAGTCTATTTTAATGAAATTTATCTAAATTGCAGCAGTCTATTTGATTCAGCTCATAGACATGTAAAAATTATGAA
 801 TGCTGTTTTCTTATGAAACAAATTGTCACAGTGTAGTTATACATTCTATTTTTGTCCCCTTTTCCCTTTTTCTCCTGTAT
 881 CTTTTAAAATTTGGAAACTACTTTTCCAGAAGGCATTATTTATGCCTCCCTAATAAGGTATTTTACTTATGACAGATGAA
 961 AAGGAACCAGGATATGTTTGAATTTTTTCACTTTCTTAGTCTGTGACAAGAAGTAGAAATATCACTAGTGTGGTATAGGA
1041 ACTTACATGTTTTTTATGATGAAAATAATTCTCAATGCCACTTGAAAGGTAATTGTGTCTGAGAGCTGCAAATTTTTCAA
1121 CCACAAAATGTCACTTATTCCTACAGGCTATACAGAGGTCTTTATGGTTTTTTTGTTTTGTTTTAATGGCAACATTGTAA
1201 CTGTCAAACTAAAAGGGTATTCTGTGATTATCTTTTAAGCATTACAGAAATTCAAGTGAAAGTTATATGCTTATTTCTAT
1281 TGATGTTAAAAATGATAATGAAAGCAAAATTAGCTGTATCTGTAATTTTCTCTCTAGTGCCAAATGAATGCCTTAGCTAC
1361 TCATAGTGCATGGTACTGTAAGTGAAGACCTGTAGCTTTTTTTTTTTCTTTAATGAAAAGCATTATAATGATGTAGCAGC
1441 ATCAGATATAAACTTAAAAAAAAAGGTTTCAATTAACATTTTATATATGGATAATGCTTTGTAAAGTGTAAGAGAAAGGT
1521 TGCAGTTGGATCAGTATAAAACAATGACCAAGCCAAAATCAGCACCCTAGGGCCTTAAATAAAATAGAGATACCCCACAA
1601 AATGAAATATTTTGAAGGATGGGAGGGGACAGAAGGGGGGACTATCCCCCAAGGATGCAAGATACTTTTTACAGTTGCTA
1681 TCATTATACTTTGTCTTCTTGCTTCAGTTAGGAAGGTTTTGATGGTAAATTCTGTCATGGTAATAGATACCTATTTTCCT
1761 AACCTGAGATTTTACAAGGAAGGTTTTTAGGTTGGCTTAAATGGAGGTATTTATTTGAGTGAGCCCTAATTTGAAAATTA
1841 CCAGACTTGATCCTCCTGGTATGAATCAAGGAAATACTGTACCTTGCTCTTAGCAACTCTCAGTGGCCTGAAAGAGAAAA
1921 TGCACTTCTTCAAGGTGAGTGAATCATGCTTTTTCCACAGTTCAGATCAGACCCTTTATTTTTCAAACTACAAGGCCTGC
2001 TTATTGGACAGTCTAAGGAATAGCTTTGATACTTGGTATTCAGTTGGTTCCATTATTAATGTATATTATTTTTATTTAAA
2081 CATCAAAACTTAAAATATCAGATAATGTTGCATGTTTTAAAAACACATTTCATCCCTTTGGCTACCCAGGACCAGCACTA
2161 TTTAAGACACTGCTTATTTATAAAATGAGAATAATGATTATATGTACATATTCAGACATCAAAATTTAATGACATTCTAT
2241 TTTGAGAAGGGAAGACAATGCTGAAGAAAGTAAAACTGTTGATTGAAATGCTGACAGGGTGGAGAACGAATTTGAAGACA
2321 GTGGAATAAACTATGAACTATGCTAATGGTAATTAGATTTTTTGTTTGTTTAGTATAGTGGTAAATTGTGTAGTATCTTG
2401 CTGAGAATCTAATTCTATCTTGTAAAATCAATCCAAATGTGTATTGTGAAACACCTGTATAAAATCATTTTTGAAATAAG
2481 TGATCTACATGCCTGTTTTTTTAAAATGTTTTTGGTAGAATTGTTTGAAAATATGTTTAGCCAGACCCTTCCCCAACTTA
2561 ATTTTTTTTTAAAAAAGGAAAATAGGTAAGAAAATGATAGTTCTATATCTCAGCCCTCTGTGAACTCTAGGCTGTCTCCA
2641 TTTTGCAGCCACTTTGGTCATTTGATGTTTACTATTGGTATACTTATGCTTTGAATTGTAAATCTTCATTGATGGTATTA
2721 CAGATTCAACCAAAACTTCTCTGTCCTGTTCAGTAATTGTTATATAAATCTGGATGAGCTAGGGAGGCCCAGGTGGATGT
2801 TTTCATTCGCAAATCATGAGAAACTTAAGTGGGTTTTATGCACTTGATAGAGTTGGCAAAATTGAACTATGAAGTTAACT
2881 ATTTAACTCAAGGAATGGGCGGCAAACCCATCCCCTCGATTGATAAAGAAGGGGAACATTTTTACATTAGAACTGACACT
2961 GAAAACATAGCTTTTTCAGTCCACCCTGGTTGCTCTAGTAGCCCACAGCCCAATCACGTTAAGGTTCTTTGCTGTGGGAA
3041 TTTTAAATAAACCAAACCCCAAAGCAGACCATCTGTAAGCTTTGGTCTGCTTGTTTCTGAGAAGGGTTTTATTTCATTAT
3121 ACTAATAGTGGACTAATAATTGGTAATTGTGAGAACTTAGGTATGATAACATTGTTTGAAGTAAAATATGATTTGGGGGC
3201 AGCAGCTTTCTAAATACCAACTCTGTTTGACAAATGTTTTGAAAATTAAAATTTCAAGTGAGCAACACCCTGTTAAGAGT
3281 TTTCACTATAGTTGAGGCAGCTACTTTATGAATAAGACCACTTTGGGTTATTTAAGCAGAAGCGTTTCTTTTTTTTTTTT
3361 GGAATGGGGTGGGATGAGGAGTGAGTTGCCAGACCTTTGATTAGTTTGCTGGTTTAGAAACAGCCAGTGGCTGAATTAGT
3441 GAGTAAATGAATGAAAGTATAAAGGACTTGTTTTTTATGATAGATTTTCTGTAAGAATCTTAAATGTTCCTTTTCAAATT
3521 AGATGTGTTGATGCACACATGACTATTCTGTTTTTCTCACTGACTATATAACATTAAAAAGGGGTTAAAGAAAACAAAAC
3601 TCTGCCTTTTGTGCTATGAAATATTTTTAGTCCAGAGGTTTTAAGCTGTGTGTCCATTCCTACTCTGAAAATGCATAGCT
3681 TTGTTCTGGATGTCATCTCTTGAAAGTAGAAAACTCCTATGTGTTTATCACATTGCAGGGCTTTCTTATGTATTTCTGGC
3761 AGACTTGCCCAAATCTTTAGATGGGCTGGGTTATACAGCATGCCCTCCCCCAAATAAGGGATCTGAAATAAATACTACAC
3841 TATTGATAGTGGAGATATATTAATTTTTAAAACTGTAAAGTAAATGTGGTCTCTAGGTTTGTGGTGTGTACCTTTGTGTT
3921 AATGTGTAGGGAAGAGACAGTGACTTGATGGTTATGGGGAGTGTATCTTGATGTGTGTATAGGGGTAAGTATTGCTAAAT
4001 TATTTACAGCTTTTATTCAGGGTGAGTCATGTGATGAATGGCCTAATCAGAAAAGTGAAGGAGCGAAGATGCAAGCTTGC
4081 CAAATGATGAAATGAACAAGATTTTGTATCTATTTTTTATCAGGTGTTGTAAAATTTGTGCATGGCTTTTTGTTGTTGTT
4161 GCTTAGTAACTGGTAGAGGAGAAAAGATGAGGAAAGAAACTCAGCTTTCCTCACAGTCTTTTCAAAGGTACACAGTTGGG
4241 GAGTAAAATCTGACTGGCCTAATCGATGGAAAAGACCCTGTCCTTTTCACCCCATCCTGCAATCCTCCGTGCAGAGGAAC
4321 TACACTGTTGTATTCTAGTAATTCACTGTGATTTATAACAAACCGGTGATGTCATTCTATTGTGCACTTTTGTCAAACCA
4401 TTTATGTGACTTTAATAAACATAGTAAACTTGCTGACTGCACCAGAGGTCCATTAGTGATTTATATATTGCATGACATTT
4481 TCTATTTGAGTTTGACATGTAGAGTCATTTTTAGTTTCATGGCAATTGACAGTCCTAATAACTCAGCTAATTTGAAACTA
4561 ACAATCTTGCTGTGTAAAAGGAAAAAATGGTGTTTGTGTTCAGTAAATGTTTGAAAAAAACTAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucgaCA-AGGACGACUu 5'
              || ||:|||||| 
Target 5' tgtaGTATCTTGCTGAg 3'
2389 - 2405 136.00 -12.70
2
miRNA  3' ucgacaaGGACGACUu 5'
                 |:|||||| 
Target 5' tagtaaaCTTGCTGAc 3'
4422 - 4437 129.00 -9.70
3
miRNA  3' ucgacaagGACGACUu 5'
                  |||:||| 
Target 5' aagtaaaaCTGTTGAt 3'
2268 - 2283 124.00 -7.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31537034 33 COSMIC
COSN31499186 50 COSMIC
COSN30623968 73 COSMIC
COSN9638060 118 COSMIC
COSN30527119 211 COSMIC
COSN16355180 303 COSMIC
COSN21575147 765 COSMIC
COSN27441571 1408 COSMIC
COSN6278696 1497 COSMIC
COSN21642784 1532 COSMIC
COSN18936834 2020 COSMIC
COSN1682968 2195 COSMIC
COSN1682969 2334 COSMIC
COSN16079129 2379 COSMIC
COSN6544823 2571 COSMIC
COSN8750025 2590 COSMIC
COSN27258398 3361 COSMIC
COSN32063208 3371 COSMIC
COSN9638061 3492 COSMIC
COSN5756174 3584 COSMIC
COSN22396849 3626 COSMIC
COSN5213571 4019 COSMIC
COSN21839811 4068 COSMIC
COSN32063717 4213 COSMIC
COSN5213572 4224 COSMIC
COSN6278697 4235 COSMIC
COSN27263820 4519 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs537839159 8 dbSNP
rs369702955 21 dbSNP
rs746786246 22 dbSNP
rs780968615 28 dbSNP
rs1414126933 30 dbSNP
rs761267600 47 dbSNP
rs373846418 49 dbSNP
rs748174240 49 dbSNP
rs762230327 51 dbSNP
rs1405018160 54 dbSNP
rs1485007787 56 dbSNP
rs1283057176 57 dbSNP
rs1043378 59 dbSNP
rs754972176 75 dbSNP
rs1312481156 78 dbSNP
rs146784770 87 dbSNP
rs1281455335 100 dbSNP
rs1225120722 102 dbSNP
rs1339010067 103 dbSNP
rs1231070252 106 dbSNP
rs1040072840 107 dbSNP
rs1298685852 109 dbSNP
rs1412677181 110 dbSNP
rs1313440517 111 dbSNP
rs1357330601 111 dbSNP
rs1473429053 113 dbSNP
rs1341696762 118 dbSNP
rs901470647 118 dbSNP
rs1399263900 120 dbSNP
rs1203161999 126 dbSNP
rs1257795430 141 dbSNP
rs931638254 144 dbSNP
rs779033565 154 dbSNP
rs1156926263 159 dbSNP
rs1484201509 159 dbSNP
rs1402724235 161 dbSNP
rs1200896624 162 dbSNP
rs1050220898 168 dbSNP
rs562759354 181 dbSNP
rs1259993445 184 dbSNP
rs1007964587 187 dbSNP
rs1239930688 195 dbSNP
rs1217295213 196 dbSNP
rs780948964 199 dbSNP
rs1448456941 207 dbSNP
rs1166200594 208 dbSNP
rs562364123 213 dbSNP
rs1336704622 214 dbSNP
rs1293615213 220 dbSNP
rs1381581132 222 dbSNP
rs568646077 226 dbSNP
rs1467012404 230 dbSNP
rs1015142353 234 dbSNP
rs140469089 235 dbSNP
rs1400676276 237 dbSNP
rs1345824154 239 dbSNP
rs1325509161 241 dbSNP
rs1437786108 241 dbSNP
rs1321607859 243 dbSNP
rs1420481341 243 dbSNP
rs1002706070 246 dbSNP
rs1364774840 247 dbSNP
rs1009841373 249 dbSNP
rs1187803150 249 dbSNP
rs1226383398 260 dbSNP
rs1251780309 265 dbSNP
rs1303502447 266 dbSNP
rs1035566521 267 dbSNP
rs1273650167 271 dbSNP
rs1469476481 271 dbSNP
rs561845635 274 dbSNP
rs398057788 275 dbSNP
rs79213461 275 dbSNP
rs1232603916 278 dbSNP
rs1305740149 278 dbSNP
rs1215042408 279 dbSNP
rs868227262 283 dbSNP
rs1366043419 294 dbSNP
rs755732277 318 dbSNP
rs570585723 321 dbSNP
rs991884130 331 dbSNP
rs1396945617 334 dbSNP
rs1021732920 340 dbSNP
rs926358720 350 dbSNP
rs554085582 354 dbSNP
rs368263455 362 dbSNP
rs577325645 363 dbSNP
rs909571883 367 dbSNP
rs1248355953 371 dbSNP
rs777320070 382 dbSNP
rs1393958502 415 dbSNP
rs924741598 423 dbSNP
rs1191197116 434 dbSNP
rs1455350955 436 dbSNP
rs748781328 440 dbSNP
rs1036915411 446 dbSNP
rs977041208 447 dbSNP
rs921509004 453 dbSNP
rs931696667 457 dbSNP
rs1050489965 465 dbSNP
rs545895527 470 dbSNP
rs1049613962 477 dbSNP
rs769495920 479 dbSNP
rs1433329341 488 dbSNP
rs1174721342 490 dbSNP
rs1232155767 491 dbSNP
rs1373520267 493 dbSNP
rs1302282065 496 dbSNP
rs889186446 505 dbSNP
rs887546602 506 dbSNP
rs150430252 507 dbSNP
rs1431016892 516 dbSNP
rs1459251452 517 dbSNP
rs1171251787 521 dbSNP
rs772835151 530 dbSNP
rs1036155496 533 dbSNP
rs1180669163 535 dbSNP
rs1009784963 545 dbSNP
rs897699843 546 dbSNP
rs1002652085 552 dbSNP
rs1278063513 575 dbSNP
rs1212882898 576 dbSNP
rs1035597654 579 dbSNP
rs1033878365 593 dbSNP
rs371858178 597 dbSNP
rs1295568742 605 dbSNP
rs541805946 607 dbSNP
rs1238607914 609 dbSNP
rs1315341181 614 dbSNP
rs201888200 621 dbSNP
rs1410801012 623 dbSNP
rs1386320524 632 dbSNP
rs763605572 639 dbSNP
rs1321353082 646 dbSNP
rs1417103525 654 dbSNP
rs1402306671 662 dbSNP
rs1157483192 663 dbSNP
rs1451252147 665 dbSNP
rs1230094932 669 dbSNP
rs1365159819 670 dbSNP
rs1022017463 685 dbSNP
rs548679172 691 dbSNP
rs1268533072 692 dbSNP
rs1016518517 694 dbSNP
rs1255074814 695 dbSNP
rs1189996541 699 dbSNP
rs545408128 705 dbSNP
rs145232632 709 dbSNP
rs1204614177 718 dbSNP
rs766963544 728 dbSNP
rs1213372560 730 dbSNP
rs972410405 732 dbSNP
rs1229195605 751 dbSNP
rs1266892365 760 dbSNP
rs1291752242 762 dbSNP
rs1235753641 763 dbSNP
rs551302256 770 dbSNP
rs1031757898 779 dbSNP
rs1379996713 785 dbSNP
rs965570820 785 dbSNP
rs976906057 797 dbSNP
rs921538140 801 dbSNP
rs985678819 806 dbSNP
rs1266090881 814 dbSNP
rs1460539906 815 dbSNP
rs374091554 820 dbSNP
rs569674067 820 dbSNP
rs1183615806 822 dbSNP
rs1166820137 825 dbSNP
rs1473115966 827 dbSNP
rs932866733 828 dbSNP
rs1411855584 830 dbSNP
rs943419062 831 dbSNP
rs774683164 840 dbSNP
rs985820942 843 dbSNP
rs540487830 844 dbSNP
rs560100347 847 dbSNP
rs893934234 847 dbSNP
rs1167304399 849 dbSNP
rs941702809 856 dbSNP
rs35616110 864 dbSNP
rs74019869 872 dbSNP
rs1271732811 878 dbSNP
rs1042441792 880 dbSNP
rs918991903 882 dbSNP
rs938540734 901 dbSNP
rs1352345104 913 dbSNP
rs552350033 915 dbSNP
rs1327694287 921 dbSNP
rs1297608664 926 dbSNP
rs568967252 930 dbSNP
rs1288980505 934 dbSNP
rs1391818192 934 dbSNP
rs1056868555 940 dbSNP
rs74019870 946 dbSNP
rs1395452180 947 dbSNP
rs189587944 950 dbSNP
rs1166102487 951 dbSNP
rs1476315153 959 dbSNP
rs1392178645 965 dbSNP
rs1189287834 967 dbSNP
rs6494730 977 dbSNP
rs1251341155 978 dbSNP
rs1043067145 979 dbSNP
rs972356732 983 dbSNP
rs568011586 997 dbSNP
rs1272668058 1002 dbSNP
rs769250884 1002 dbSNP
rs955445035 1005 dbSNP
rs904561970 1015 dbSNP
rs1483782871 1018 dbSNP
rs1232893990 1022 dbSNP
rs1368378975 1041 dbSNP
rs985407115 1047 dbSNP
rs998849135 1048 dbSNP
rs1205225941 1062 dbSNP
rs911007177 1073 dbSNP
rs1411651421 1076 dbSNP
rs1031790410 1082 dbSNP
rs1371069195 1094 dbSNP
rs1469014772 1095 dbSNP
rs566596774 1106 dbSNP
rs1183983806 1107 dbSNP
rs935846849 1109 dbSNP
rs965435656 1112 dbSNP
rs1271375048 1121 dbSNP
rs998366689 1122 dbSNP
rs1193154494 1124 dbSNP
rs35888855 1125 dbSNP
rs77020709 1126 dbSNP
rs1180089653 1130 dbSNP
rs1484351043 1139 dbSNP
rs1253122722 1142 dbSNP
rs1210742048 1147 dbSNP
rs1423463571 1151 dbSNP
rs1345143762 1152 dbSNP
rs990018075 1152 dbSNP
rs915316611 1156 dbSNP
rs1349491930 1158 dbSNP
rs1277609633 1163 dbSNP
rs1444068498 1167 dbSNP
rs1412797450 1168 dbSNP
rs1430543861 1168 dbSNP
rs554876974 1168 dbSNP
rs1373712992 1172 dbSNP
rs1028460430 1174 dbSNP
rs1178318385 1179 dbSNP
rs954322455 1193 dbSNP
rs1407503848 1195 dbSNP
rs1157228192 1197 dbSNP
rs1473792183 1207 dbSNP
rs1413096319 1217 dbSNP
rs1187878627 1218 dbSNP
rs1307466754 1224 dbSNP
rs945469001 1225 dbSNP
rs984819155 1238 dbSNP
rs112492149 1239 dbSNP
rs963401967 1241 dbSNP
rs971684726 1253 dbSNP
rs1281745146 1257 dbSNP
rs939567384 1263 dbSNP
rs1329622281 1266 dbSNP
rs571003036 1267 dbSNP
rs1231445879 1269 dbSNP
rs1357271166 1274 dbSNP
rs919024490 1280 dbSNP
rs1448805019 1285 dbSNP
rs938407130 1289 dbSNP
rs1056904258 1312 dbSNP
rs761166179 1314 dbSNP
rs1055381267 1319 dbSNP
rs768885930 1328 dbSNP
rs1379702203 1333 dbSNP
rs895424839 1338 dbSNP
rs1413247592 1342 dbSNP
rs1227517415 1344 dbSNP
rs915692473 1350 dbSNP
rs1312526172 1361 dbSNP
rs1474541679 1363 dbSNP
rs539635279 1364 dbSNP
rs556273091 1367 dbSNP
rs1416551684 1373 dbSNP
rs948581045 1379 dbSNP
rs1278405645 1397 dbSNP
rs60111545 1397 dbSNP
rs796468349 1397 dbSNP
rs1210219684 1398 dbSNP
rs1465063005 1403 dbSNP
rs78587299 1408 dbSNP
rs1343818349 1409 dbSNP
rs1228535086 1413 dbSNP
rs1273217287 1414 dbSNP
rs1005666097 1415 dbSNP
rs1323467907 1420 dbSNP
rs1212772083 1422 dbSNP
rs1313387970 1422 dbSNP
rs1361373465 1429 dbSNP
rs1295409380 1436 dbSNP
rs1437620612 1441 dbSNP
rs1389628539 1444 dbSNP
rs576106272 1448 dbSNP
rs1483162937 1450 dbSNP
rs896891161 1451 dbSNP
rs1392304777 1454 dbSNP
rs1450280949 1455 dbSNP
rs1029714252 1456 dbSNP
rs796707283 1456 dbSNP
rs1168062898 1457 dbSNP
rs1416858017 1462 dbSNP
rs1189920450 1479 dbSNP
rs1449746905 1481 dbSNP
rs1417397170 1484 dbSNP
rs1043400396 1486 dbSNP
rs955074400 1492 dbSNP
rs1489353244 1495 dbSNP
rs1265750262 1498 dbSNP
rs1203737350 1501 dbSNP
rs1213709417 1509 dbSNP
rs1408147025 1518 dbSNP
rs904427353 1524 dbSNP
rs998880378 1525 dbSNP
rs1053086211 1528 dbSNP
rs1365972119 1538 dbSNP
rs1359648651 1539 dbSNP
rs1302984313 1543 dbSNP
rs1385251492 1546 dbSNP
rs1370190447 1555 dbSNP
rs1294488062 1562 dbSNP
rs1451701058 1564 dbSNP
rs901264703 1586 dbSNP
rs756282009 1587 dbSNP
rs776743293 1603 dbSNP
rs998230815 1617 dbSNP
rs1007007811 1621 dbSNP
rs1171376394 1623 dbSNP
rs1434473397 1633 dbSNP
rs1267878589 1635 dbSNP
rs541893848 1637 dbSNP
rs66989829 1639 dbSNP
rs1005704275 1640 dbSNP
rs1342985976 1642 dbSNP
rs1017626483 1643 dbSNP
rs181131583 1645 dbSNP
rs1314153361 1666 dbSNP
rs1220442492 1667 dbSNP
rs369015177 1672 dbSNP
rs971715848 1679 dbSNP
rs80143225 1682 dbSNP
rs913090133 1685 dbSNP
rs959786194 1693 dbSNP
rs1310407272 1696 dbSNP
rs966758062 1697 dbSNP
rs1374324163 1703 dbSNP
rs992578456 1707 dbSNP
rs915656083 1717 dbSNP
rs767482251 1719 dbSNP
rs978600818 1724 dbSNP
rs925881570 1735 dbSNP
rs939362319 1739 dbSNP
rs1188094337 1744 dbSNP
rs1240560221 1749 dbSNP
rs1055566619 1752 dbSNP
rs1485303552 1757 dbSNP
rs934529237 1764 dbSNP
rs1198777798 1803 dbSNP
rs1479075414 1808 dbSNP
rs866309779 1825 dbSNP
rs1053111509 1826 dbSNP
rs1194492304 1839 dbSNP
rs916823949 1840 dbSNP
rs1238534958 1847 dbSNP
rs1327545216 1852 dbSNP
rs941637953 1860 dbSNP
rs1038477883 1867 dbSNP
rs1374815595 1882 dbSNP
rs1331678074 1891 dbSNP
rs897340913 1895 dbSNP
rs1402233367 1897 dbSNP
rs1425823920 1901 dbSNP
rs752447501 1909 dbSNP
rs993843588 1934 dbSNP
rs755924740 1938 dbSNP
rs1474869700 1946 dbSNP
rs1415536651 1972 dbSNP
rs1189480440 1974 dbSNP
rs560395551 1979 dbSNP
rs568802734 1987 dbSNP
rs1018382440 1989 dbSNP
rs866839182 1996 dbSNP
rs1209724236 1997 dbSNP
rs889856853 2006 dbSNP
rs1334571078 2025 dbSNP
rs1324302106 2039 dbSNP
rs957253378 2042 dbSNP
rs1247551456 2059 dbSNP
rs1340559301 2060 dbSNP
rs1274887791 2064 dbSNP
rs1345459941 2085 dbSNP
rs1294232989 2099 dbSNP
rs757001949 2101 dbSNP
rs1006149927 2114 dbSNP
rs1011514007 2120 dbSNP
rs1270426776 2134 dbSNP
rs1460754653 2136 dbSNP
rs1017071935 2137 dbSNP
rs1388243358 2140 dbSNP
rs1330335345 2143 dbSNP
rs1208471542 2148 dbSNP
rs1282469522 2154 dbSNP
rs1458287015 2161 dbSNP
rs897421981 2163 dbSNP
rs35445025 2189 dbSNP
rs758369187 2189 dbSNP
rs1187988242 2193 dbSNP
rs1250170539 2198 dbSNP
rs1447942792 2198 dbSNP
rs994341985 2200 dbSNP
rs1391424147 2207 dbSNP
rs1035234596 2211 dbSNP
rs75571734 2216 dbSNP
rs992494396 2223 dbSNP
rs1225507540 2229 dbSNP
rs1343623797 2239 dbSNP
rs967209292 2240 dbSNP
rs1023160311 2254 dbSNP
rs1246140095 2255 dbSNP
rs558038941 2258 dbSNP
rs1329137433 2259 dbSNP
rs1325272524 2265 dbSNP
rs928060618 2267 dbSNP
rs1395654354 2270 dbSNP
rs186023604 2284 dbSNP
rs961101928 2288 dbSNP
rs577141810 2296 dbSNP
rs752638042 2296 dbSNP
rs74019871 2300 dbSNP
rs866609559 2308 dbSNP
rs934478206 2313 dbSNP
rs1245407268 2329 dbSNP
rs1201436921 2332 dbSNP
rs1038597742 2336 dbSNP
rs988760863 2338 dbSNP
rs189745872 2341 dbSNP
rs934001050 2349 dbSNP
rs551351769 2350 dbSNP
rs1233197505 2358 dbSNP
rs1274641078 2358 dbSNP
rs112967560 2361 dbSNP
rs1233661851 2361 dbSNP
rs376526441 2361 dbSNP
rs377070193 2361 dbSNP
rs1049723974 2369 dbSNP
rs1344252531 2374 dbSNP
rs1306123728 2383 dbSNP
rs1402552418 2386 dbSNP
rs561528969 2389 dbSNP
rs1308705391 2395 dbSNP
rs1051731224 2396 dbSNP
rs1423293961 2401 dbSNP
rs1351605690 2408 dbSNP
rs780845695 2418 dbSNP
rs1411612772 2423 dbSNP
rs780740916 2427 dbSNP
rs1180648756 2432 dbSNP
rs942463660 2437 dbSNP
rs1251980214 2444 dbSNP
rs1208789405 2446 dbSNP
rs941418699 2448 dbSNP
rs1358757179 2467 dbSNP
rs1280332754 2478 dbSNP
rs1210589625 2479 dbSNP
rs892816024 2490 dbSNP
rs1286222606 2496 dbSNP
rs560416090 2503 dbSNP
rs1489896356 2504 dbSNP
rs1351015101 2519 dbSNP
rs112104100 2531 dbSNP
rs770691347 2539 dbSNP
rs903133467 2549 dbSNP
rs897369802 2553 dbSNP
rs541231283 2555 dbSNP
rs747331493 2558 dbSNP
rs1415183888 2559 dbSNP
rs199702117 2561 dbSNP
rs1035266315 2562 dbSNP
rs542430000 2562 dbSNP
rs991325138 2562 dbSNP
rs896724692 2564 dbSNP
rs1473579885 2567 dbSNP
rs1014356386 2568 dbSNP
rs1022602501 2571 dbSNP
rs555314964 2571 dbSNP
rs970213087 2572 dbSNP
rs1422255161 2581 dbSNP
rs1238636992 2582 dbSNP
rs978572909 2587 dbSNP
rs547815009 2595 dbSNP
rs974084152 2601 dbSNP
rs748841725 2602 dbSNP
rs562220205 2606 dbSNP
rs1210330582 2615 dbSNP
rs1329557601 2616 dbSNP
rs930245907 2625 dbSNP
rs777118460 2628 dbSNP
rs143544235 2629 dbSNP
rs539673018 2633 dbSNP
rs1226475248 2656 dbSNP
rs1377069657 2657 dbSNP
rs138222642 2660 dbSNP
rs113167440 2671 dbSNP
rs569881342 2675 dbSNP
rs1327273289 2676 dbSNP
rs374112768 2678 dbSNP
rs1389778981 2679 dbSNP
rs535565071 2688 dbSNP
rs911187345 2689 dbSNP
rs1245966956 2697 dbSNP
rs1314687888 2703 dbSNP
rs1349130673 2705 dbSNP
rs143728777 2712 dbSNP
rs1415407207 2716 dbSNP
rs941356243 2726 dbSNP
rs1038488582 2730 dbSNP
rs1448545027 2752 dbSNP
rs1245853164 2754 dbSNP
rs1190057307 2759 dbSNP
rs1357514510 2765 dbSNP
rs918657956 2792 dbSNP
rs1465191074 2793 dbSNP
rs1245842967 2796 dbSNP
rs1039864844 2807 dbSNP
rs892932631 2809 dbSNP
rs930170450 2810 dbSNP
rs1341495516 2825 dbSNP
rs1056535865 2827 dbSNP
rs1295707611 2830 dbSNP
rs1041431381 2837 dbSNP
rs896757464 2843 dbSNP
rs903082543 2844 dbSNP
rs1293292795 2871 dbSNP
rs1435011226 2874 dbSNP
rs1248326144 2881 dbSNP
rs1443986834 2883 dbSNP
rs1187958566 2890 dbSNP
rs1012468723 2892 dbSNP
rs1428570950 2896 dbSNP
rs1003220161 2898 dbSNP
rs1170094238 2901 dbSNP
rs1384254857 2902 dbSNP
rs572398922 2907 dbSNP
rs1266478348 2909 dbSNP
rs1169948020 2918 dbSNP
rs1189221871 2918 dbSNP
rs773243888 2919 dbSNP
rs894306547 2924 dbSNP
rs1482777193 2926 dbSNP
rs1272567426 2930 dbSNP
rs1230965351 2931 dbSNP
rs1308280145 2932 dbSNP
rs905560618 2939 dbSNP
rs774193213 2940 dbSNP
rs1301065318 2944 dbSNP
rs561987461 2967 dbSNP
rs879935317 2967 dbSNP
rs1023673276 2970 dbSNP
rs1297021776 2971 dbSNP
rs962797846 2987 dbSNP
rs1404950463 2990 dbSNP
rs1409678187 2996 dbSNP
rs1397019403 3003 dbSNP
rs1336441292 3004 dbSNP
rs1000254905 3006 dbSNP
rs74019872 3011 dbSNP
rs1173467815 3018 dbSNP
rs955751524 3019 dbSNP
rs1298434170 3022 dbSNP
rs1025619780 3023 dbSNP
rs1181453514 3032 dbSNP
rs1307062956 3036 dbSNP
rs146070259 3039 dbSNP
rs1207344195 3048 dbSNP
rs987468997 3049 dbSNP
rs1249598836 3057 dbSNP
rs1255654858 3057 dbSNP
rs912693345 3063 dbSNP
rs111677476 3070 dbSNP
rs371110892 3070 dbSNP
rs577191180 3074 dbSNP
rs775418507 3075 dbSNP
rs1459701092 3093 dbSNP
rs955472388 3099 dbSNP
rs1228379059 3107 dbSNP
rs765302188 3113 dbSNP
rs914309289 3119 dbSNP
rs374607196 3122 dbSNP
rs1190184107 3127 dbSNP
rs1261979489 3130 dbSNP
rs1427457404 3135 dbSNP
rs985434874 3148 dbSNP
rs767988389 3163 dbSNP
rs1167662420 3168 dbSNP
rs546082746 3169 dbSNP
rs1379914009 3172 dbSNP
rs760453726 3184 dbSNP
rs1467201330 3187 dbSNP
rs1406620559 3190 dbSNP
rs962771116 3191 dbSNP
rs80042059 3196 dbSNP
rs541605631 3199 dbSNP
rs1255483169 3201 dbSNP
rs930034744 3209 dbSNP
rs1180402786 3218 dbSNP
rs1057421040 3224 dbSNP
rs1264193397 3224 dbSNP
rs561812120 3234 dbSNP
rs1270598704 3242 dbSNP
rs1240316868 3244 dbSNP
rs1339369492 3244 dbSNP
rs1380633488 3248 dbSNP
rs918129881 3257 dbSNP
rs35616559 3259 dbSNP
rs1303435466 3261 dbSNP
rs1319426756 3264 dbSNP
rs1013156903 3266 dbSNP
rs1390494980 3269 dbSNP
rs182017307 3271 dbSNP
rs1045347127 3274 dbSNP
rs1368025059 3276 dbSNP
rs904082987 3285 dbSNP
rs999883181 3294 dbSNP
rs1025567570 3298 dbSNP
rs951464490 3308 dbSNP
rs1188110120 3309 dbSNP
rs750666942 3314 dbSNP
rs1250216606 3319 dbSNP
rs1054094058 3322 dbSNP
rs1206307647 3324 dbSNP
rs891558033 3325 dbSNP
rs1263212612 3331 dbSNP
rs1009950115 3333 dbSNP
rs1029417340 3337 dbSNP
rs753724678 3338 dbSNP
rs955269458 3343 dbSNP
rs1007123977 3344 dbSNP
rs1367184097 3345 dbSNP
rs547347539 3345 dbSNP
rs1264009901 3346 dbSNP
rs1164883035 3349 dbSNP
rs28498450 3349 dbSNP
rs796240618 3349 dbSNP
rs1260984486 3361 dbSNP
rs1426647713 3362 dbSNP
rs1485318841 3365 dbSNP
rs1184281468 3367 dbSNP
rs968408685 3371 dbSNP
rs1481053179 3373 dbSNP
rs563709753 3375 dbSNP
rs1375192299 3376 dbSNP
rs186380567 3377 dbSNP
rs756839355 3383 dbSNP
rs1018215702 3391 dbSNP
rs1020280720 3395 dbSNP
rs962925714 3408 dbSNP
rs1212096474 3410 dbSNP
rs550020994 3413 dbSNP
rs1344852733 3414 dbSNP
rs1273283257 3426 dbSNP
rs1225802863 3428 dbSNP
rs1270588633 3444 dbSNP
rs1343823766 3444 dbSNP
rs974059861 3454 dbSNP
rs1329086548 3458 dbSNP
rs975558767 3461 dbSNP
rs914760532 3471 dbSNP
rs1451820867 3484 dbSNP
rs1366344242 3489 dbSNP
rs764985259 3492 dbSNP
rs977175668 3496 dbSNP
rs190785049 3498 dbSNP
rs758007621 3510 dbSNP
rs938343909 3519 dbSNP
rs951470906 3524 dbSNP
rs1202313069 3525 dbSNP
rs536045767 3526 dbSNP
rs1202367275 3539 dbSNP
rs747511058 3540 dbSNP
rs1273294654 3543 dbSNP
rs1282615750 3544 dbSNP
rs1343529817 3547 dbSNP
rs1199468014 3556 dbSNP
rs1342615752 3559 dbSNP
rs1230034680 3564 dbSNP
rs138874263 3565 dbSNP
rs755561777 3569 dbSNP
rs1349765186 3570 dbSNP
rs559990345 3571 dbSNP
rs995511927 3574 dbSNP
rs1266840355 3577 dbSNP
rs1047134809 3579 dbSNP
rs1414120672 3587 dbSNP
rs1400593337 3598 dbSNP
rs948267970 3601 dbSNP
rs1470609510 3616 dbSNP
rs1267432942 3625 dbSNP
rs887235885 3635 dbSNP
rs1008635187 3639 dbSNP
rs1232884259 3639 dbSNP
rs1019633052 3647 dbSNP
rs981321720 3649 dbSNP
rs781386396 3651 dbSNP
rs28728467 3661 dbSNP
rs140986731 3663 dbSNP
rs1167244267 3666 dbSNP
rs748584893 3693 dbSNP
rs1264826517 3705 dbSNP
rs79699752 3708 dbSNP
rs1328169527 3717 dbSNP
rs1266181669 3718 dbSNP
rs1230085688 3719 dbSNP
rs1375707528 3720 dbSNP
rs1424140972 3722 dbSNP
rs1280200111 3728 dbSNP
rs968876183 3737 dbSNP
rs1301326581 3739 dbSNP
rs1338894642 3743 dbSNP
rs1453860474 3744 dbSNP
rs1054124832 3754 dbSNP
rs891505553 3757 dbSNP
rs1402946413 3761 dbSNP
rs1298538121 3769 dbSNP
rs1408151696 3770 dbSNP
rs1162103540 3771 dbSNP
rs945687460 3773 dbSNP
rs1372433792 3774 dbSNP
rs1471500481 3776 dbSNP
rs78230835 3782 dbSNP
rs534739900 3783 dbSNP
rs183415859 3789 dbSNP
rs992880317 3792 dbSNP
rs528996153 3797 dbSNP
rs749307890 3798 dbSNP
rs948606440 3807 dbSNP
rs1227846970 3810 dbSNP
rs1357316152 3814 dbSNP
rs771003642 3816 dbSNP
rs973298435 3833 dbSNP
rs1246904839 3839 dbSNP
rs1288884423 3842 dbSNP
rs898422154 3846 dbSNP
rs1433560532 3853 dbSNP
rs929136304 3856 dbSNP
rs1323420290 3858 dbSNP
rs578039059 3859 dbSNP
rs1205906853 3870 dbSNP
rs1232792999 3872 dbSNP
rs1047588861 3886 dbSNP
rs1448486378 3889 dbSNP
rs1479890856 3893 dbSNP
rs887170215 3894 dbSNP
rs1486046765 3913 dbSNP
rs1219216552 3922 dbSNP
rs1489882381 3923 dbSNP
rs995345437 3926 dbSNP
rs539746007 3928 dbSNP
rs1294038561 3941 dbSNP
rs1025506978 3951 dbSNP
rs951411597 3967 dbSNP
rs992100173 3978 dbSNP
rs758866923 3981 dbSNP
rs1041413395 3985 dbSNP
rs1293929212 3985 dbSNP
rs1025074087 3986 dbSNP
rs188467310 3990 dbSNP
rs548679316 3990 dbSNP
rs113503896 4023 dbSNP
rs1021880986 4029 dbSNP
rs1303203406 4030 dbSNP
rs1161765637 4031 dbSNP
rs183127866 4048 dbSNP
rs1172029039 4057 dbSNP
rs1428915956 4064 dbSNP
rs1424127928 4065 dbSNP
rs925403308 4066 dbSNP
rs1410601465 4076 dbSNP
rs781773494 4087 dbSNP
rs12594282 4088 dbSNP
rs1482746932 4094 dbSNP
rs550377342 4095 dbSNP
rs914143454 4099 dbSNP
rs1031857862 4100 dbSNP
rs960030136 4107 dbSNP
rs1338414366 4108 dbSNP
rs370211339 4113 dbSNP
rs868236307 4114 dbSNP
rs751519168 4119 dbSNP
rs1451373740 4125 dbSNP
rs1051177964 4128 dbSNP
rs992599267 4146 dbSNP
rs1023016033 4147 dbSNP
rs1343746305 4157 dbSNP
rs969694516 4164 dbSNP
rs1358423379 4167 dbSNP
rs1173670364 4175 dbSNP
rs890894835 4188 dbSNP
rs1429945677 4190 dbSNP
rs920501487 4214 dbSNP
rs1272973205 4216 dbSNP
rs1472307407 4226 dbSNP
rs1248501175 4228 dbSNP
rs1179228769 4229 dbSNP
rs942412784 4233 dbSNP
rs1481068264 4234 dbSNP
rs929250997 4241 dbSNP
rs1202200693 4244 dbSNP
rs572127256 4246 dbSNP
rs569958085 4250 dbSNP
rs777326998 4255 dbSNP
rs760518376 4265 dbSNP
rs898375105 4266 dbSNP
rs1391666950 4268 dbSNP
rs1461043351 4270 dbSNP
rs983663907 4278 dbSNP
rs1250120688 4279 dbSNP
rs1475813503 4284 dbSNP
rs995286254 4284 dbSNP
rs1025538139 4291 dbSNP
rs748961956 4291 dbSNP
rs1185976448 4293 dbSNP
rs1406459307 4297 dbSNP
rs887000176 4300 dbSNP
rs1158420867 4303 dbSNP
rs1451525160 4303 dbSNP
rs1362183803 4305 dbSNP
rs911740108 4307 dbSNP
rs138661188 4309 dbSNP
rs1025362492 4310 dbSNP
rs537674605 4314 dbSNP
rs969502505 4320 dbSNP
rs1178323623 4323 dbSNP
rs1244129586 4326 dbSNP
rs1041136417 4328 dbSNP
rs1485167830 4331 dbSNP
rs1406627455 4333 dbSNP
rs1262020098 4336 dbSNP
rs1469085921 4338 dbSNP
rs1239176597 4344 dbSNP
rs1002739009 4347 dbSNP
rs1312468736 4357 dbSNP
rs1327798302 4357 dbSNP
rs764142515 4361 dbSNP
rs1380496342 4365 dbSNP
rs540735559 4365 dbSNP
rs1043108589 4366 dbSNP
rs1269028040 4376 dbSNP
rs1289322170 4380 dbSNP
rs904758580 4381 dbSNP
rs1360507681 4383 dbSNP
rs1454382764 4385 dbSNP
rs958222452 4401 dbSNP
rs563748477 4414 dbSNP
rs1446659592 4417 dbSNP
rs1264301826 4419 dbSNP
rs1188295007 4421 dbSNP
rs1386303521 4421 dbSNP
rs1445600592 4423 dbSNP
rs1032223206 4425 dbSNP
rs1206178925 4433 dbSNP
rs1487910758 4435 dbSNP
rs1323347245 4436 dbSNP
rs1202146562 4437 dbSNP
rs1296361090 4438 dbSNP
rs988291250 4443 dbSNP
rs895987385 4452 dbSNP
rs1327915375 4456 dbSNP
rs1296208597 4459 dbSNP
rs914176659 4468 dbSNP
rs1365104384 4484 dbSNP
rs1301348379 4485 dbSNP
rs954913580 4488 dbSNP
rs1426837006 4493 dbSNP
rs1447762896 4498 dbSNP
rs1022704023 4499 dbSNP
rs1240359232 4501 dbSNP
rs1167506846 4503 dbSNP
rs969807301 4518 dbSNP
rs1375135237 4529 dbSNP
rs973023149 4535 dbSNP
rs1480382454 4538 dbSNP
rs1266200021 4539 dbSNP
rs1200992984 4540 dbSNP
rs1490355780 4544 dbSNP
rs986494032 4548 dbSNP
rs776262186 4550 dbSNP
rs761702577 4553 dbSNP
rs1341299437 4556 dbSNP
rs1251663756 4557 dbSNP
rs942379113 4559 dbSNP
rs950610085 4560 dbSNP
rs1343534763 4561 dbSNP
rs79452366 4565 dbSNP
rs1201574691 4567 dbSNP
rs543753099 4575 dbSNP
rs919657777 4584 dbSNP
rs1346167134 4586 dbSNP
rs1429877000 4591 dbSNP
rs754859235 4601 dbSNP
rs911677206 4603 dbSNP
rs1173938969 4608 dbSNP
rs965905309 4610 dbSNP
rs1427839388 4615 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084066. RNA binding protein: AGO2. Condition:CLIP_noemetine_SantaCruzAb HITS-CLIP data was present in GSM1084075. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep1_SantaCruzAb HITS-CLIP data was present in GSM1084080. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_SantaCruzAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084066
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_SantaCruzAb
Location of target site ENST00000306917.4 | 3UTR | AGAAGGGAAGACAAUGCUGAAGAAAGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084075
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep1_SantaCruzAb
Location of target site ENST00000306917.4 | 3UTR | AGAAGGGAAGACAAUGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
82 hsa-miR-4291 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT102445 CALU calumenin 2 4
MIRT108677 ZBTB33 zinc finger and BTB domain containing 33 2 4
MIRT125969 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 6
MIRT179018 PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 2 4
MIRT379033 CDK6 cyclin dependent kinase 6 2 6
MIRT442473 CPEB4 cytoplasmic polyadenylation element binding protein 4 2 2
MIRT442910 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT442979 ZNF736 zinc finger protein 736 2 2
MIRT445663 TNFSF15 TNF superfamily member 15 2 2
MIRT446237 FZD6 frizzled class receptor 6 2 2
MIRT448860 FAM49B family with sequence similarity 49 member B 2 2
MIRT455559 TRAF1 TNF receptor associated factor 1 2 2
MIRT459704 ZNF641 zinc finger protein 641 2 2
MIRT460608 FEM1A fem-1 homolog A 2 2
MIRT462251 LAMA4 laminin subunit alpha 4 2 2
MIRT462469 FIZ1 FLT3 interacting zinc finger 1 2 2
MIRT466656 TAF1D TATA-box binding protein associated factor, RNA polymerase I subunit D 2 6
MIRT466841 STX6 syntaxin 6 2 2
MIRT471403 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT471517 PCGF3 polycomb group ring finger 3 2 2
MIRT471681 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT472858 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT474813 KIAA0226 RUN and cysteine rich domain containing beclin 1 interacting protein 2 2
MIRT474931 KCTD15 potassium channel tetramerization domain containing 15 2 2
MIRT475814 HDGF heparin binding growth factor 2 2
MIRT480434 C17orf49 chromosome 17 open reading frame 49 2 2
MIRT480903 BCL2L2-PABPN1 BCL2L2-PABPN1 readthrough 2 2
MIRT481478 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT484982 UBE2V1 ubiquitin conjugating enzyme E2 V1 2 8
MIRT485019 TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough 2 8
MIRT485036 TMEM189 transmembrane protein 189 2 8
MIRT495074 HEYL hes related family bHLH transcription factor with YRPW motif-like 2 2
MIRT496004 CD180 CD180 molecule 2 2
MIRT500675 TRIM37 tripartite motif containing 37 2 2
MIRT504544 ZNF417 zinc finger protein 417 2 6
MIRT506782 KLHL15 kelch like family member 15 2 6
MIRT507256 FGF2 fibroblast growth factor 2 2 6
MIRT507386 EN2 engrailed homeobox 2 2 2
MIRT512505 BTBD19 BTB domain containing 19 2 2
MIRT516903 CTSB cathepsin B 2 2
MIRT528124 PPP1R10 protein phosphatase 1 regulatory subunit 10 2 2
MIRT528874 ATF3 activating transcription factor 3 2 2
MIRT536091 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT541079 RLIM ring finger protein, LIM domain interacting 2 2
MIRT541099 RAF1 Raf-1 proto-oncogene, serine/threonine kinase 2 2
MIRT545360 LIN7C lin-7 homolog C, crumbs cell polarity complex component 2 2
MIRT545831 ZNF367 zinc finger protein 367 2 4
MIRT547115 PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 2 2
MIRT547312 NPTN neuroplastin 2 2
MIRT547959 HIGD1A HIG1 hypoxia inducible domain family member 1A 2 4
MIRT549943 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT550749 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT565145 TUBB2A tubulin beta 2A class IIa 2 2
MIRT571050 POLQ DNA polymerase theta 2 2
MIRT571361 ZNF45 zinc finger protein 45 2 2
MIRT610133 FOXI2 forkhead box I2 2 2
MIRT613145 DSE dermatan sulfate epimerase 2 2
MIRT613379 ABCC12 ATP binding cassette subfamily C member 12 2 2
MIRT615752 C6 complement C6 2 2
MIRT616460 ADRA2B adrenoceptor alpha 2B 2 2
MIRT616719 FEM1B fem-1 homolog B 2 2
MIRT618312 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT631491 RASSF4 Ras association domain family member 4 2 2
MIRT643134 PLCXD2 phosphatidylinositol specific phospholipase C X domain containing 2 2 2
MIRT643482 DISC1 disrupted in schizophrenia 1 2 2
MIRT649715 TWSG1 twisted gastrulation BMP signaling modulator 1 2 2
MIRT653542 SLC38A7 solute carrier family 38 member 7 2 2
MIRT666307 SLC22A3 solute carrier family 22 member 3 2 2
MIRT692005 NAP1L4 nucleosome assembly protein 1 like 4 2 2
MIRT696838 ARL2BP ADP ribosylation factor like GTPase 2 binding protein 2 2
MIRT698204 TMEM248 transmembrane protein 248 2 2
MIRT703316 GDPD5 glycerophosphodiester phosphodiesterase domain containing 5 2 2
MIRT709376 FAM13A family with sequence similarity 13 member A 2 2
MIRT710112 MED23 mediator complex subunit 23 2 2
MIRT711975 HOMER2 homer scaffolding protein 2 2 2
MIRT712275 PPIP5K2 diphosphoinositol pentakisphosphate kinase 2 2 2
MIRT714108 TMED9 transmembrane p24 trafficking protein 9 2 2
MIRT719113 MAML1 mastermind like transcriptional coactivator 1 2 2
MIRT719727 SLC39A11 solute carrier family 39 member 11 2 2
MIRT720018 TFAP2C transcription factor AP-2 gamma 2 2
MIRT720358 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT720372 NUDT3 nudix hydrolase 3 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4291 Platinum-based doublet chemotherapy resistant High Lung Adenocarcinoma tissue
hsa-miR-4291 Platinum 23939 resistant High Ovarian Cancer tissue
hsa-miR-4291 Paclitaxel 36314 NSC125973 approved resistant High Prostate Cancer cell line (DU-145, PC-3)
hsa-miR-4291 Doxorubicin 31703 NSC123127 approved resistant High Chronic Myelogenous Leukemia cell line (K562)
hsa-miR-4291 Radioactivity Iodine resistant High Papillary Thyroid Cancer tissue
hsa-miR-4291 Cisplatin 5460033 NSC119875 approved resistant High Hypopharyngeal Cancer cell line (FaDu)
hsa-miR-4291 Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-4291 Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-4291 Cisplatin 5460033 NSC119875 approved sensitive cell line (CAL-27) (cytosolic RNA)
hsa-miR-4291 Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-4291 Platinum-based doublet chemotherapy resistant tissue (lung adenocarcinoma)
hsa-miR-4291 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4291 Gemcitabine 60750 NSC613327 approved resistant cell line (Panc1-GR3)
hsa-miR-4291 Gemcitabine 60750 NSC613327 approved resistant cell line (Panc1-GR4)

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