pre-miRNA Information
pre-miRNA hsa-mir-4793   
Genomic Coordinates chr3: 48644194 - 48644280
Description Homo sapiens miR-4793 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4793-3p
Sequence 58| UCUGCACUGUGAGUUGGCUGGCU |80
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5899925 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs779602935 6 dbSNP
rs757908486 7 dbSNP
rs1422853760 15 dbSNP
rs377721296 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol MBOAT1   
Synonyms LPEAT1, LPLAT, LPLAT 1, LPSAT, OACT1, dJ434O11.1
Description membrane bound O-acyltransferase domain containing 1
Transcript NM_001080480   
Expression
Putative miRNA Targets on MBOAT1
3'UTR of MBOAT1
(miRNA target sites are highlighted)
>MBOAT1|NM_001080480|3'UTR
   1 TACCTCCAAGAGAAGCGGAACAAGCAAAACTGCAGAACGTTCGAAAGATGAGATGACAAGGCTTCAAGGGCTCCTCCGGT
  81 GGCTTAGAGGCGATGTTTACATGCATCTTTATTTTGTTCTTTTTTAAAGTGCAGGGAGTATTTTTTTTTTTTTTTTTTTT
 161 TTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAAGCTCCG
 241 CCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCCCGCCACTACGCCCGGCTAA
 321 TTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTTTTAGCCGGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCG
 401 CCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCGGGAGTATTTTTATAAAGCCTTTTTGTA
 481 CAGATTAATCGGCCATGTCCAGGTTATTGGTTTTGATATTTTATAGGACATTTGAGTGGTGTGGCGATGTGTAGAGAATG
 561 TGCCAGAGCTGCAGAGACAGTCCATTCTGGGCTGCTGGCTTTTTGCCCTTCCTGCATGATTTCCAGCTACTGTGACCTGG
 641 ATGCTGGGAACCCAGGCATCGGCTCCAAAAATTAGAAGGCGAGTGCTGAGAAGACTTGTCACAGGTTTCTCAAATCAGAA
 721 TATACTCAGTCATAGTGGTTCCCTGGGAAGCCCCAGACCCTTTGACTTGTGACATTACTGGTTTGCAGACATAATAACTA
 801 CACTCAGAGGACCATGGAGGCAGAGGGATCATGGTTTCAGGGCACTGAAAACTCTACGAGCCAAGAGGACTAGTGCATGG
 881 ACTGAAAGTCAGGCATGCCCTCAAATAGGCTGTATTTTCTTTCCAGGAATGTAACCTTTCCCCTTTTTCTTCTGACCTGA
 961 GCCAAGATTGGAAATCAGAAAGTCTCCTGTACATGGAGCTGAAGAGGGGCTGCTGTTTTCCGAATGTTTTCCATTTCACA
1041 GGCGCCACCTGCTTGCCCGGGGTTGGTCTTGAGAAGACACCCAAATGTTCATGCCTCAGAAAGGCAGCAGAATGCCTTTT
1121 AGGAAATTTTTTTAAAGTAATTTGAAGTTATATAGAAGTTTGGTAAGAAGAAGCAGTTGTTTCTCTCTTTTCTCCCTCAT
1201 TTCATGGAGGTGTTAATGATCATGGCTGGCCGTGATGTACACATGGGCTGATTTTCATTTTTTCAGTTTCATAGCTGAGA
1281 AATTCAGCTTTGTTTTAGTTGAATCATCATATTGGAAAGCAGACATTGAAAGTTTTCTTTTCTATCTTTGTTATGAATGT
1361 GCTATGGCCCCTTTTGGAGACTTCTATTGGGTAATATTCTATGTGAGAGAAGGAAACTTGGTATTAAATGTTGTGGAAAA
1441 TAATAATGATGATAATAATAAAGTATATGCTGCAATGGTGTACTGCCAATCAGATTGCTTGGGAGAAGAAAATTTATTCA
1521 AATCCAACGATAAAAAATTAATTTCTTATTGAATAAACAGTATGTTCCCATATAAAAGAAATGTTTCTGATGGGAATAAT
1601 TGCTTTTTGTCTGTGTCAATAGAGACACAGGTCCATAAGGTGTCCTACTGCTGCTTCTCTTAGGATAGTGAAATGTGAAT
1681 GTGATGTGCCTGTTCCTCTACAGCATGTAAACAGTCCTGGTGCTGGGGGAGAGTACTAGAACCCAAACTTTAGTCCTTAT
1761 TTGGGACAGTGGAAGTTAAGAAGTAGTAGATGTGAGCTAGTGCATGAGTCTCACCCCACTTTAACAAGGAAATCTTGGGG
1841 CAACCCTACTTCGCTGTCCCAGGAAGAATCTTAGATAGTGGGTAGGGGAAGGGGGTTGTAGGTATCTAAAATCTGTCAGA
1921 GTTTGTCTCCACCAAGAATAGTTTGAGGTACGAGACCAAGAAAAATGTACATCTTGCAAACTAGCAAAAATGGTAAATAT
2001 TACCATTGGTGTGGAGTATGTGGAATAATCATATTACAGTGAAGTCTTTGAATTTACAATGTGATTGATGATCAGGTTTC
2081 ACTGTATGTAATGTAAGTATCCTCATGTCTGAAAGAAGAACTTGGTAATGAGAGCAGAGGTGTCTGCTTTGGTGACCAGC
2161 TGCCCTGGTTTGCCAAGGACTCTCTCAAGCCCTCAGTCCTGGGCAAGCTGGGGCCATTGGTCCCACTAGTGACTGCCCAG
2241 AATTGATTACTCCTTATGGGATGAGGAGAAGTCAAACCTCTAGGAGTTGAGCTTATGGATGCTATATGTCAGACTTGGTG
2321 TTAGGCCCTGGGACACAAACATGAGGCTTTATTCTGTATAAAAAGAACAACACATAGGAGACTGATTAGCATCCTTTTTC
2401 TTCTGAAAACCACTTACCCATAGAAAAAGATTTCAACTGAGGACCAACATTTAGACGGAAGGTTGGGACTGTTTTTATTA
2481 CCTTAGATTTCCAAGTTGTCCTAAATATAAGATGCAGTTCATAAATACTTATTGGAATGTGAGCTTTCAGTTGAAAATAA
2561 ATACACTTTCTGGTTTTGTTTTTGAAAAAGCCAAATCTAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            :|: |||:  :: ||||||| 
Target 5' tgTCGCCCAGGCTGGAGTGCAGt 3'
189 - 211 153.00 -19.70
2
miRNA  3' ucggucgguuGAGUGUCACGUCu 5'
                    :|:| ||||||| 
Target 5' tttgttctttTTTAAAGTGCAGg 3'
113 - 135 149.00 -14.00
3
miRNA  3' ucGGUCGGUU-GAGUG-UCACGUcu 5'
            | ||||||    || ||||||  
Target 5' taCGAGCCAAGAGGACTAGTGCAtg 3'
855 - 879 137.00 -16.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30128966 8 COSMIC
COSN26983895 17 COSMIC
COSN31527049 41 COSMIC
COSN26983894 43 COSMIC
COSN30153652 50 COSMIC
COSN30144020 92 COSMIC
COSN20466594 111 COSMIC
COSN5273094 111 COSMIC
COSN20091346 116 COSMIC
COSN31841308 119 COSMIC
rs2235142 2295 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs750307260 3 dbSNP
rs371867829 7 dbSNP
rs1238014356 8 dbSNP
rs533161079 15 dbSNP
rs751076430 16 dbSNP
rs763631114 17 dbSNP
rs762420640 18 dbSNP
rs777182159 19 dbSNP
rs766866558 21 dbSNP
rs761038229 25 dbSNP
rs773583493 35 dbSNP
rs772235980 38 dbSNP
rs961154801 39 dbSNP
rs1015326316 41 dbSNP
rs774592477 42 dbSNP
rs1292897988 43 dbSNP
rs1471184218 49 dbSNP
rs1454188799 50 dbSNP
rs896138515 52 dbSNP
rs1478898504 54 dbSNP
rs1463574803 61 dbSNP
rs566209522 63 dbSNP
rs1173869724 64 dbSNP
rs1167080446 70 dbSNP
rs1453680078 77 dbSNP
rs80284069 78 dbSNP
rs75707634 81 dbSNP
rs1043570800 88 dbSNP
rs1456200514 91 dbSNP
rs866064810 92 dbSNP
rs1249364975 101 dbSNP
rs1226111381 105 dbSNP
rs879017909 111 dbSNP
rs879092754 116 dbSNP
rs913329734 118 dbSNP
rs879167603 119 dbSNP
rs562285827 122 dbSNP
rs1053119073 125 dbSNP
rs1264393572 126 dbSNP
rs1195961802 137 dbSNP
rs1481332080 138 dbSNP
rs1253703674 139 dbSNP
rs1234233975 140 dbSNP
rs1471972916 141 dbSNP
rs1349206334 142 dbSNP
rs1306141576 143 dbSNP
rs1346903671 145 dbSNP
rs1445122924 145 dbSNP
rs1238430548 146 dbSNP
rs1335454820 147 dbSNP
rs1378183602 147 dbSNP
rs1307990166 151 dbSNP
rs1421273419 151 dbSNP
rs1318801809 156 dbSNP
rs1393295658 156 dbSNP
rs1445421096 157 dbSNP
rs1400200423 164 dbSNP
rs1312301074 165 dbSNP
rs1434082154 166 dbSNP
rs1375959884 168 dbSNP
rs1175345220 169 dbSNP
rs13214429 171 dbSNP
rs1158906922 172 dbSNP
rs1176914046 172 dbSNP
rs1177796126 172 dbSNP
rs1212547409 172 dbSNP
rs1221094127 172 dbSNP
rs1224684793 172 dbSNP
rs1238053515 172 dbSNP
rs1239972276 172 dbSNP
rs1278413316 172 dbSNP
rs1304031339 172 dbSNP
rs1307730158 172 dbSNP
rs1316037337 172 dbSNP
rs1356543823 172 dbSNP
rs1382927118 172 dbSNP
rs1412362459 172 dbSNP
rs1424232420 172 dbSNP
rs1440857273 172 dbSNP
rs1457377326 172 dbSNP
rs58966886 172 dbSNP
rs752590850 172 dbSNP
rs1196792521 173 dbSNP
rs1240155945 173 dbSNP
rs1263971929 173 dbSNP
rs1317592107 173 dbSNP
rs1468421301 174 dbSNP
rs1362940247 175 dbSNP
rs1182115140 176 dbSNP
rs544006962 177 dbSNP
rs944065046 184 dbSNP
rs532074232 185 dbSNP
rs564609201 188 dbSNP
rs1464819316 190 dbSNP
rs985709018 190 dbSNP
rs374834231 193 dbSNP
rs1401880958 197 dbSNP
rs1000242778 199 dbSNP
rs1323491819 202 dbSNP
rs903655285 205 dbSNP
rs920131386 209 dbSNP
rs1439045120 215 dbSNP
rs945264704 216 dbSNP
rs901785158 217 dbSNP
rs1340160592 222 dbSNP
rs1040444104 238 dbSNP
rs1289046860 239 dbSNP
rs974284374 240 dbSNP
rs1224403904 245 dbSNP
rs961812334 246 dbSNP
rs577016454 247 dbSNP
rs376396580 254 dbSNP
rs1425072493 255 dbSNP
rs960397752 258 dbSNP
rs1389163519 274 dbSNP
rs149073617 278 dbSNP
rs1304079746 279 dbSNP
rs1002238749 281 dbSNP
rs903788544 285 dbSNP
rs1360322931 291 dbSNP
rs1398313128 292 dbSNP
rs1022605432 298 dbSNP
rs1009432014 299 dbSNP
rs943084941 300 dbSNP
rs1354144607 302 dbSNP
rs910218934 306 dbSNP
rs371834335 308 dbSNP
rs1357382224 310 dbSNP
rs867696964 311 dbSNP
rs892281510 314 dbSNP
rs6933020 315 dbSNP
rs944117231 317 dbSNP
rs891175317 328 dbSNP
rs1158904917 329 dbSNP
rs1366228233 330 dbSNP
rs1049718303 333 dbSNP
rs1455057098 334 dbSNP
rs1418239833 335 dbSNP
rs930398907 335 dbSNP
rs541539821 338 dbSNP
rs1186670695 354 dbSNP
rs1385910660 355 dbSNP
rs1475259029 357 dbSNP
rs539229739 364 dbSNP
rs974714727 365 dbSNP
rs940244173 378 dbSNP
rs908704144 388 dbSNP
rs1285456050 389 dbSNP
rs866250853 395 dbSNP
rs1354596871 396 dbSNP
rs1262319770 399 dbSNP
rs867310227 400 dbSNP
rs1234059022 401 dbSNP
rs960448669 402 dbSNP
rs1199554262 404 dbSNP
rs1253377212 405 dbSNP
rs1033406813 407 dbSNP
rs1462279353 408 dbSNP
rs1183730482 410 dbSNP
rs980476203 417 dbSNP
rs1337081278 418 dbSNP
rs968106192 423 dbSNP
rs1022236160 426 dbSNP
rs1428606957 428 dbSNP
rs537375264 432 dbSNP
rs892333832 433 dbSNP
rs1018740760 437 dbSNP
rs138232158 442 dbSNP
rs1383688582 443 dbSNP
rs189022404 444 dbSNP
rs150420484 445 dbSNP
rs1050241287 448 dbSNP
rs932695136 449 dbSNP
rs141635587 452 dbSNP
rs898490027 453 dbSNP
rs1444500634 454 dbSNP
rs1308825354 465 dbSNP
rs548177282 467 dbSNP
rs558568718 468 dbSNP
rs536256247 471 dbSNP
rs1475398402 476 dbSNP
rs1243195869 481 dbSNP
rs1195853530 487 dbSNP
rs1467420906 490 dbSNP
rs1456789561 491 dbSNP
rs1179499849 492 dbSNP
rs534045348 494 dbSNP
rs1056665654 495 dbSNP
rs939472162 496 dbSNP
rs1431674862 500 dbSNP
rs926390180 503 dbSNP
rs1169996089 513 dbSNP
rs1256279004 521 dbSNP
rs114711913 523 dbSNP
rs1299828698 527 dbSNP
rs967778685 538 dbSNP
rs1374042014 540 dbSNP
rs1000211519 541 dbSNP
rs1298976153 545 dbSNP
rs903287465 548 dbSNP
rs1270707600 549 dbSNP
rs1276977869 555 dbSNP
rs1315539951 560 dbSNP
rs1207174401 562 dbSNP
rs1229439810 572 dbSNP
rs1368560510 577 dbSNP
rs1020728325 586 dbSNP
rs1009443686 587 dbSNP
rs1480862711 596 dbSNP
rs1193221884 598 dbSNP
rs1421500359 599 dbSNP
rs1430370290 605 dbSNP
rs1324919936 611 dbSNP
rs1040259636 614 dbSNP
rs914882426 616 dbSNP
rs1367250906 621 dbSNP
rs368038611 627 dbSNP
rs956624728 633 dbSNP
rs888765243 640 dbSNP
rs1396186208 644 dbSNP
rs1018792240 654 dbSNP
rs1359509120 656 dbSNP
rs1008696980 657 dbSNP
rs184649975 660 dbSNP
rs1408851343 661 dbSNP
rs953199669 665 dbSNP
rs1028428571 675 dbSNP
rs997333995 681 dbSNP
rs1294314092 687 dbSNP
rs1490619260 689 dbSNP
rs1216418285 704 dbSNP
rs768216405 715 dbSNP
rs1261298376 723 dbSNP
rs535976841 725 dbSNP
rs898548101 731 dbSNP
rs919033165 732 dbSNP
rs1423136465 733 dbSNP
rs1161602764 734 dbSNP
rs1038780449 752 dbSNP
rs1386802316 764 dbSNP
rs1425056524 771 dbSNP
rs1004194686 774 dbSNP
rs1343048129 791 dbSNP
rs950280337 794 dbSNP
rs887371973 796 dbSNP
rs1377811661 798 dbSNP
rs1394904128 803 dbSNP
rs1194618571 809 dbSNP
rs568548028 814 dbSNP
rs1360878152 820 dbSNP
rs1056720077 831 dbSNP
rs1239839476 843 dbSNP
rs1470043440 856 dbSNP
rs1318909407 858 dbSNP
rs1216816077 861 dbSNP
rs939524542 864 dbSNP
rs1482327388 868 dbSNP
rs926782450 874 dbSNP
rs16883345 877 dbSNP
rs1445213912 888 dbSNP
rs1157773347 896 dbSNP
rs1405556436 902 dbSNP
rs946466407 908 dbSNP
rs1402013865 920 dbSNP
rs1159395303 922 dbSNP
rs925925260 925 dbSNP
rs771420583 929 dbSNP
rs1338180895 932 dbSNP
rs967435872 935 dbSNP
rs1278110397 940 dbSNP
rs1375992039 952 dbSNP
rs1020361731 957 dbSNP
rs1207241874 964 dbSNP
rs914956376 965 dbSNP
rs987783700 967 dbSNP
rs998686201 968 dbSNP
rs1302466058 971 dbSNP
rs531931674 977 dbSNP
rs911836741 978 dbSNP
rs987328453 980 dbSNP
rs1321761582 982 dbSNP
rs1205613731 989 dbSNP
rs953250037 993 dbSNP
rs747411502 994 dbSNP
rs1029253316 1009 dbSNP
rs192512620 1017 dbSNP
rs965867834 1019 dbSNP
rs190803055 1021 dbSNP
rs778084657 1022 dbSNP
rs866642651 1031 dbSNP
rs866310079 1032 dbSNP
rs527951257 1043 dbSNP
rs1177637476 1044 dbSNP
rs1423991812 1045 dbSNP
rs1467953545 1047 dbSNP
rs1177908050 1055 dbSNP
rs1330284230 1056 dbSNP
rs1016991726 1057 dbSNP
rs1465504303 1058 dbSNP
rs6456296 1059 dbSNP
rs74838052 1061 dbSNP
rs1048739214 1062 dbSNP
rs1274679868 1063 dbSNP
rs184141250 1068 dbSNP
rs1056773961 1071 dbSNP
rs1283929360 1079 dbSNP
rs1159831473 1081 dbSNP
rs1317386034 1082 dbSNP
rs1194209932 1085 dbSNP
rs1270792017 1089 dbSNP
rs1455864256 1094 dbSNP
rs1406150219 1104 dbSNP
rs1245924775 1123 dbSNP
rs1003789209 1126 dbSNP
rs1479213018 1129 dbSNP
rs1201170202 1131 dbSNP
rs994544335 1133 dbSNP
rs1470609227 1134 dbSNP
rs1477195458 1139 dbSNP
rs905410267 1144 dbSNP
rs1165689381 1145 dbSNP
rs1399248577 1150 dbSNP
rs1411031969 1154 dbSNP
rs1234726036 1167 dbSNP
rs1323234032 1174 dbSNP
rs1364136679 1175 dbSNP
rs1406945380 1189 dbSNP
rs1045642206 1191 dbSNP
rs946880219 1192 dbSNP
rs1303963402 1203 dbSNP
rs1185864526 1220 dbSNP
rs1225329498 1222 dbSNP
rs1484689690 1226 dbSNP
rs1341314681 1227 dbSNP
rs1279509560 1229 dbSNP
rs1290707029 1231 dbSNP
rs1489804254 1232 dbSNP
rs781441722 1241 dbSNP
rs1224505100 1245 dbSNP
rs893557613 1249 dbSNP
rs1313745194 1272 dbSNP
rs1446131232 1282 dbSNP
rs1281822649 1287 dbSNP
rs1374302052 1288 dbSNP
rs1476006537 1319 dbSNP
rs897569493 1320 dbSNP
rs1222898877 1324 dbSNP
rs1373567124 1331 dbSNP
rs1426912283 1333 dbSNP
rs1052120570 1337 dbSNP
rs528673886 1344 dbSNP
rs796284094 1344 dbSNP
rs911553845 1346 dbSNP
rs1327132493 1349 dbSNP
rs1056378315 1354 dbSNP
rs937592891 1355 dbSNP
rs1412367680 1361 dbSNP
rs544045557 1363 dbSNP
rs931896736 1364 dbSNP
rs1354202434 1367 dbSNP
rs926249898 1386 dbSNP
rs1349429109 1389 dbSNP
rs576965531 1399 dbSNP
rs192720389 1401 dbSNP
rs967318266 1407 dbSNP
rs973659632 1420 dbSNP
rs1410435135 1428 dbSNP
rs976840762 1430 dbSNP
rs1447039171 1431 dbSNP
rs1474929341 1435 dbSNP
rs747210404 1435 dbSNP
rs1363588150 1436 dbSNP
rs1708 1445 dbSNP
rs67112243 1448 dbSNP
rs867946198 1448 dbSNP
rs1160535350 1451 dbSNP
rs533861471 1452 dbSNP
rs201366808 1454 dbSNP
rs370967388 1454 dbSNP
rs753956128 1459 dbSNP
rs879470673 1462 dbSNP
rs982862462 1469 dbSNP
rs1380467809 1475 dbSNP
rs1454520631 1480 dbSNP
rs1315429992 1489 dbSNP
rs573066963 1493 dbSNP
rs1035025740 1501 dbSNP
rs1269638740 1502 dbSNP
rs1230999612 1503 dbSNP
rs1003506112 1515 dbSNP
rs905460160 1523 dbSNP
rs187843288 1524 dbSNP
rs1351033454 1527 dbSNP
rs535836331 1528 dbSNP
rs1260724008 1529 dbSNP
rs1027607576 1535 dbSNP
rs994763191 1537 dbSNP
rs1417680626 1538 dbSNP
rs897455262 1545 dbSNP
rs893954062 1547 dbSNP
rs1036454034 1549 dbSNP
rs1052173308 1551 dbSNP
rs1480263931 1562 dbSNP
rs757231094 1564 dbSNP
rs13202077 1566 dbSNP
rs568608283 1567 dbSNP
rs531082271 1575 dbSNP
rs1408435638 1581 dbSNP
rs752793398 1590 dbSNP
rs1470889434 1597 dbSNP
rs895581838 1603 dbSNP
rs1055947905 1608 dbSNP
rs751450465 1609 dbSNP
rs937546382 1609 dbSNP
rs1308955026 1611 dbSNP
rs1335921162 1617 dbSNP
rs1222530599 1618 dbSNP
rs1280762504 1619 dbSNP
rs1360457365 1627 dbSNP
rs1051397604 1635 dbSNP
rs1431917406 1639 dbSNP
rs753443713 1641 dbSNP
rs931639549 1641 dbSNP
rs1043251882 1642 dbSNP
rs1461083014 1651 dbSNP
rs1197907631 1655 dbSNP
rs1418725898 1664 dbSNP
rs182474408 1665 dbSNP
rs1490237513 1666 dbSNP
rs1197568177 1668 dbSNP
rs921874416 1686 dbSNP
rs1480788377 1688 dbSNP
rs1169916607 1696 dbSNP
rs1372417954 1697 dbSNP
rs570968182 1703 dbSNP
rs1299604572 1704 dbSNP
rs764003026 1705 dbSNP
rs941897328 1709 dbSNP
rs1403899361 1713 dbSNP
rs907701713 1716 dbSNP
rs1300877632 1717 dbSNP
rs977187615 1725 dbSNP
rs1294300720 1726 dbSNP
rs944119163 1729 dbSNP
rs1230262861 1732 dbSNP
rs1185797732 1733 dbSNP
rs1252204836 1744 dbSNP
rs1490283418 1745 dbSNP
rs1220775159 1761 dbSNP
rs983249077 1765 dbSNP
rs1249618693 1767 dbSNP
rs552708002 1777 dbSNP
rs1035078797 1785 dbSNP
rs982533648 1790 dbSNP
rs1172473179 1798 dbSNP
rs1390762175 1800 dbSNP
rs1027491499 1804 dbSNP
rs973290983 1805 dbSNP
rs762587914 1807 dbSNP
rs1436761453 1808 dbSNP
rs1014577139 1812 dbSNP
rs1359286200 1813 dbSNP
rs1024329555 1817 dbSNP
rs2235141 1819 dbSNP
rs76304669 1827 dbSNP
rs1215601620 1832 dbSNP
rs547822524 1843 dbSNP
rs1244222689 1844 dbSNP
rs764782220 1852 dbSNP
rs191791920 1853 dbSNP
rs756139869 1879 dbSNP
rs1258987016 1885 dbSNP
rs1486876696 1891 dbSNP
rs1187224493 1893 dbSNP
rs999627781 1897 dbSNP
rs1001243835 1907 dbSNP
rs890217377 1908 dbSNP
rs1051448855 1917 dbSNP
rs1443992548 1921 dbSNP
rs904677484 1933 dbSNP
rs562094423 1939 dbSNP
rs1395485138 1951 dbSNP
rs750330576 1952 dbSNP
rs900164432 1962 dbSNP
rs759150054 1965 dbSNP
rs1038056752 1971 dbSNP
rs1487939702 1972 dbSNP
rs892066940 1977 dbSNP
rs1328073821 1992 dbSNP
rs1382618056 1995 dbSNP
rs1451105170 2000 dbSNP
rs1317563957 2014 dbSNP
rs941966573 2016 dbSNP
rs1282384912 2029 dbSNP
rs1319022176 2033 dbSNP
rs907753874 2041 dbSNP
rs1216570088 2043 dbSNP
rs944070885 2045 dbSNP
rs1353940259 2050 dbSNP
rs1169689327 2056 dbSNP
rs1201721531 2057 dbSNP
rs1244949396 2066 dbSNP
rs1428996160 2067 dbSNP
rs1391838258 2075 dbSNP
rs142663241 2086 dbSNP
rs369469841 2095 dbSNP
rs796473747 2095 dbSNP
rs1159175245 2097 dbSNP
rs938465361 2120 dbSNP
rs765980992 2121 dbSNP
rs928062559 2134 dbSNP
rs1211206904 2139 dbSNP
rs920396674 2141 dbSNP
rs1441925411 2144 dbSNP
rs1244888871 2150 dbSNP
rs1375722492 2151 dbSNP
rs1479375707 2159 dbSNP
rs1282674624 2168 dbSNP
rs1321530902 2170 dbSNP
rs982198085 2172 dbSNP
rs969830756 2173 dbSNP
rs796218454 2176 dbSNP
rs916575239 2178 dbSNP
rs576836193 2185 dbSNP
rs1015293076 2194 dbSNP
rs1234002358 2198 dbSNP
rs1230968035 2210 dbSNP
rs958303360 2222 dbSNP
rs1182480291 2228 dbSNP
rs1184297824 2231 dbSNP
rs992768704 2236 dbSNP
rs1031185322 2243 dbSNP
rs767218140 2248 dbSNP
rs999678846 2256 dbSNP
rs1426466261 2257 dbSNP
rs761608603 2267 dbSNP
rs1327189040 2268 dbSNP
rs1356668848 2269 dbSNP
rs1303679347 2275 dbSNP
rs1389845713 2276 dbSNP
rs1343947756 2282 dbSNP
rs375041913 2283 dbSNP
rs1030078690 2284 dbSNP
rs1345547081 2290 dbSNP
rs2235142 2295 dbSNP
rs1430381598 2296 dbSNP
rs200305928 2296 dbSNP
rs900217028 2298 dbSNP
rs1037373672 2302 dbSNP
rs2235143 2304 dbSNP
rs1010400836 2311 dbSNP
rs567107352 2327 dbSNP
rs892038985 2335 dbSNP
rs1200886307 2336 dbSNP
rs1047664666 2344 dbSNP
rs761189240 2351 dbSNP
rs187352888 2355 dbSNP
rs938517486 2356 dbSNP
rs1475348533 2357 dbSNP
rs1166683685 2364 dbSNP
rs796893270 2374 dbSNP
rs1422331692 2376 dbSNP
rs1430802922 2381 dbSNP
rs928448436 2384 dbSNP
rs1046949553 2394 dbSNP
rs1407003121 2403 dbSNP
rs948168691 2412 dbSNP
rs1200589360 2416 dbSNP
rs530150910 2420 dbSNP
rs1428782210 2439 dbSNP
rs762503829 2446 dbSNP
rs535898836 2447 dbSNP
rs1249255187 2448 dbSNP
rs10428825 2456 dbSNP
rs924220391 2457 dbSNP
rs1290776166 2471 dbSNP
rs1356735928 2473 dbSNP
rs931370836 2498 dbSNP
rs978312014 2500 dbSNP
rs1289908853 2507 dbSNP
rs183015550 2514 dbSNP
rs1037535173 2520 dbSNP
rs940486729 2527 dbSNP
rs148552244 2531 dbSNP
rs1450658332 2532 dbSNP
rs907705685 2535 dbSNP
rs1383812644 2553 dbSNP
rs993132137 2559 dbSNP
rs1237214887 2565 dbSNP
rs1164028704 2566 dbSNP
rs959998700 2568 dbSNP
rs1399017652 2572 dbSNP
rs1320433182 2578 dbSNP
rs1335370087 2581 dbSNP
rs1307884154 2582 dbSNP
rs1390671070 2584 dbSNP
rs1435730941 2585 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084079. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucggucgguugagugUCACGUCu 5'
                         ||||||| 
Target 5' --------------aAGUGCAGg 3'
1 - 9
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM4903831
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / 124TD_shELAVL3_a
Location of target site NM_001080480 | 3UTR | CUUUAUUUUGUUCUUUUUUAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_001080480 | 3UTR | UUUUUUUGAGACGGAGUCUCGCUCUGUCGCCCAGGCUGGAGUGCAGUGGCGGGAUCUCGGCUCACUGCAAGCUCCGCCUCCCGGGUUCACGCCAUUCUCCUGCCUCAGCCUCCCAAGUAGCUGGGACUACAGGCGCCCGCCACUACGCCCGGCUAAUUUUUUGUAUUUUUAGUAGAGACGGGGUUUCACCGUUUUAGCCGGGAUGGUCUCGAUCUCCUGACCUCGUGAUCCGCCCGCCUCGGCCUCCCAAAGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_001080480 | 3UTR | UUUUUGAGACGGAGUCUCGCUCUGUCGCCCAGGCUGGAGUGCAGUGGCGGGAUCUCGGCUCACUGCAAGCUCCGCCUCCCGGGUUCACGCCAUUCUCCUGCCUCAGCCUCCCAAGUAGCUGGGACUACAGGCGCCCGCCACUACGCCCGGCUAAUUUUUUGUAUUUUUAGUAGAGACGGGGUUUCACCGUUUUAGCCGGGAUGGUCUCGAUCUCCUGACCUCGUGAUCCGCCCGCCUCGGCCUCCCAAAGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_001080480 | 3UTR | UUUUUGAGACGGAGUCUCGCUCUGUCGCCCAGGCUGGAGUGCAGUGGCGGGAUCUCGGCUCACUGCAAGCUCCGCCUCCCGGGUUCACGCCAUUCUCCUGCCUCAGCCUCCCAAGUAGCUGGGACUACAGGCGCCCGCCACUACGCCCGGCUAAUUUUUUGUAUUUUUAGUAGAGACGGGGUUUCACCGUUUUAGCCGGGAUGGUCUCGAUCUCCUGACCUCGUGAUCCGCCCGCCUCGGCCUCCCAAAGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_001080480 | 3UTR | UUUUUUUUUGAGACGGAGUCUCGCUCUGUCGCCCAGGCUGGAGUGCAGUGGCGGGAUCUCGGCUCACUGCAAGCUCCGCCUCCCGGGUUCACGCCAUUCUCCUGCCUCAGCCUCCCAAGUAGCUGGGACUACAGGCGCCCGCCACUACGCCCGGCUAAUUUUUUGUAUUUUUAGUAGAGACGGGGUUUCACCGUUUUAGCCGGGAUGGUCUCGAUCUCCUGACCUCGUGAUCCGCCCGCCUCGGCCUCCCAAAGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_001080480 | 3UTR | UUUUUGAGACGGAGUCUCGCUCUGUCGCCCAGGCUGGAGUGCAGUGGCGGGAUCUCGGCUCACUGCAAGCUCCGCCUCCCGGGUUCACGCCAUUCUCCUGCCUCAGCCUCCCAAGUAGCUGGGACUACAGGCGCCCGCCACUACGCCCGGCUAAUUUUUUGUAUUUUUAGUAGAGACGGGGUUUCACCGUUUUAGCCGGGAUGGUCUCGAUCUCCUGACCUCGUGAUCCGCCCGCCUCGGCCUCCCAAAGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_001080480 | 3UTR | UUUUUGAGACGGAGUCUCGCUCUGUCGCCCAGGCUGGAGUGCAGUGGCGGGAUCUCGGCUCACUGCAAGCUCCGCCUCCCGGGUUCACGCCAUUCUCCUGCCUCAGCCUCCCAAGUAGCUGGGACUACAGGCGCCCGCCACUACGCCCGGCUAAUUUUUUGUAUUUUUAGUAGAGACGGGGUUUCACCGUUUUAGCCGGGAUGGUCUCGAUCUCCUGACCUCGUGAUCCGCCCGCCUCGGCCUCCCAAAGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM1084079
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_AbnovaAb
Location of target site ENST00000541730.1 | 3UTR | AAGUGCAGGGAGUAUUUUUUUUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
296 hsa-miR-4793-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092332 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT131237 ATG2A autophagy related 2A 2 2
MIRT145926 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT206559 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT226455 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT337662 ZNF695 zinc finger protein 695 2 2
MIRT405828 SIX4 SIX homeobox 4 2 2
MIRT455113 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT456756 TMEM239 transmembrane protein 239 2 4
MIRT457974 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT458173 LYRM4 LYR motif containing 4 2 4
MIRT458245 SLC9A7 solute carrier family 9 member A7 2 2
MIRT466145 TMEM120B transmembrane protein 120B 2 2
MIRT474981 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT475601 HMGB2 high mobility group box 2 2 4
MIRT480759 BMP3 bone morphogenetic protein 3 2 4
MIRT481156 AVL9 AVL9 cell migration associated 2 2
MIRT482155 AK2 adenylate kinase 2 2 2
MIRT488386 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT496575 KIF18B kinesin family member 18B 2 2
MIRT498411 TXNDC16 thioredoxin domain containing 16 2 4
MIRT504547 ZNF417 zinc finger protein 417 2 6
MIRT505417 TCF7L2 transcription factor 7 like 2 2 2
MIRT509349 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 6
MIRT512164 CD164 CD164 molecule 2 6
MIRT517238 PRIM1 DNA primase subunit 1 2 2
MIRT518671 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT519298 MLH1 mutL homolog 1 2 2
MIRT523662 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT525452 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539847 ZNF766 zinc finger protein 766 2 2
MIRT540076 SSH3 slingshot protein phosphatase 3 2 2
MIRT540320 PIGR polymeric immunoglobulin receptor 2 2
MIRT540548 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT540759 UTP6 UTP6, small subunit processome component 2 2
MIRT541545 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT541553 SLC35E1 solute carrier family 35 member E1 2 2
MIRT541666 ATP8B3 ATPase phospholipid transporting 8B3 2 4
MIRT541722 TFDP2 transcription factor Dp-2 2 2
MIRT541800 DUSP28 dual specificity phosphatase 28 2 2
MIRT541816 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT541907 VWA7 von Willebrand factor A domain containing 7 2 2
MIRT542154 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT542207 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542233 FUT9 fucosyltransferase 9 2 2
MIRT542320 SERPING1 serpin family G member 1 2 2
MIRT542369 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542476 APOC3 apolipoprotein C3 2 2
MIRT542641 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542660 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT542749 PRRG4 proline rich and Gla domain 4 2 4
MIRT542789 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT545442 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT546206 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT552270 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552655 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT554134 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT556795 KIAA1958 KIAA1958 2 2
MIRT564762 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT569428 STX7 syntaxin 7 2 2
MIRT573245 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT607390 LANCL3 LanC like 3 2 2
MIRT607430 NOTCH2NL notch 2 N-terminal like 2 2
MIRT607452 ZNF543 zinc finger protein 543 2 2
MIRT607580 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT607748 ANGPT4 angiopoietin 4 2 2
MIRT607907 SPRYD4 SPRY domain containing 4 2 2
MIRT608703 GMPR guanosine monophosphate reductase 2 2
MIRT612127 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 2 2
MIRT612786 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT616692 LPL lipoprotein lipase 2 2
MIRT617045 ZNF610 zinc finger protein 610 2 2
MIRT617091 ZNF43 zinc finger protein 43 2 2
MIRT617314 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT617355 MELK maternal embryonic leucine zipper kinase 2 2
MIRT617486 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT617579 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT617669 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT617722 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617893 PTCHD3 patched domain containing 3 2 2
MIRT617982 ZNF234 zinc finger protein 234 2 4
MIRT618434 MYLK3 myosin light chain kinase 3 2 4
MIRT618732 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT619045 CASS4 Cas scaffolding protein family member 4 2 2
MIRT619573 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT619671 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT619887 ABHD17B abhydrolase domain containing 17B 2 2
MIRT620519 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT620535 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT620996 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT621304 YIPF4 Yip1 domain family member 4 2 2
MIRT622086 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622168 SMYD1 SET and MYND domain containing 1 2 2
MIRT622543 PXMP4 peroxisomal membrane protein 4 2 2
MIRT622761 PGM3 phosphoglucomutase 3 2 2
MIRT622885 PDCL3 phosducin like 3 2 4
MIRT623130 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 2 2
MIRT624840 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT625047 MBD3 methyl-CpG binding domain protein 3 2 2
MIRT625059 ZNF556 zinc finger protein 556 2 2
MIRT625508 PPAPDC1A phospholipid phosphatase 4 2 2
MIRT625573 ANKRD42 ankyrin repeat domain 42 2 2
MIRT626133 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT626327 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626765 CDC14B cell division cycle 14B 2 2
MIRT626798 CSE1L chromosome segregation 1 like 2 2
MIRT627212 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT627225 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT627256 XKR4 XK related 4 2 2
MIRT628190 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT628466 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT628627 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT629040 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT630847 ACACB acetyl-CoA carboxylase beta 2 2
MIRT631721 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT632264 USP1 ubiquitin specific peptidase 1 2 4
MIRT632571 POLQ DNA polymerase theta 2 2
MIRT633992 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635211 ZNF286A zinc finger protein 286A 2 4
MIRT635249 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635261 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT635283 GK5 glycerol kinase 5 (putative) 2 2
MIRT635663 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT636251 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT636564 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT636814 TBC1D24 TBC1 domain family member 24 2 2
MIRT637358 ZNF460 zinc finger protein 460 2 2
MIRT637473 DEFB105B defensin beta 105B 2 4
MIRT637505 DEFB105A defensin beta 105A 2 4
MIRT637861 SC5D sterol-C5-desaturase 2 2
MIRT638080 ZNF652 zinc finger protein 652 2 2
MIRT638096 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT638174 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT638201 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT638278 SH2B3 SH2B adaptor protein 3 2 2
MIRT638714 FUT11 fucosyltransferase 11 2 2
MIRT638852 CLMP CXADR like membrane protein 2 2
MIRT639815 TMED8 transmembrane p24 trafficking protein family member 8 2 2
MIRT640879 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT640937 FAM129A family with sequence similarity 129 member A 2 2
MIRT640971 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT641642 GNAZ G protein subunit alpha z 2 2
MIRT641931 SLC25A16 solute carrier family 25 member 16 2 2
MIRT642136 CRY2 cryptochrome circadian clock 2 2 2
MIRT643199 JAK3 Janus kinase 3 2 2
MIRT643256 ZNF566 zinc finger protein 566 2 2
MIRT643378 TRIM16L tripartite motif containing 16 like 2 2
MIRT643683 AMER3 APC membrane recruitment protein 3 2 2
MIRT643728 MCMDC2 minichromosome maintenance domain containing 2 2 2
MIRT643949 CCDC141 coiled-coil domain containing 141 2 2
MIRT644915 SERF1B small EDRK-rich factor 1B 2 2
MIRT645163 NOL9 nucleolar protein 9 2 2
MIRT645547 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT645550 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT645572 TACR2 tachykinin receptor 2 2 2
MIRT646697 SERF1A small EDRK-rich factor 1A 2 2
MIRT647806 FRMD8 FERM domain containing 8 2 2
MIRT647903 CIRH1A UTP4, small subunit processome component 2 2
MIRT648978 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT649907 SLFN12L schlafen family member 12 like 2 2
MIRT650224 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT651880 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT651935 UBN1 ubinuclein 1 2 2
MIRT652839 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT652994 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT654800 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655591 OTUD7B OTU deubiquitinase 7B 2 2
MIRT658760 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT659358 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT660717 AMER1 APC membrane recruitment protein 1 2 2
MIRT660737 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT661088 TMEM145 transmembrane protein 145 2 2
MIRT661176 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT662005 ZNF445 zinc finger protein 445 2 2
MIRT662178 KIAA1210 KIAA1210 2 2
MIRT662270 OR51E2 olfactory receptor family 51 subfamily E member 2 2 2
MIRT663046 SLC16A4 solute carrier family 16 member 4 2 2
MIRT663476 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT664039 RPL27A ribosomal protein L27a 2 2
MIRT664096 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT664109 FUT1 fucosyltransferase 1 (H blood group) 2 2
MIRT664317 CD209 CD209 molecule 2 2
MIRT664455 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT664595 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 4
MIRT664694 DBF4 DBF4 zinc finger 2 2
MIRT665162 SF3A1 splicing factor 3a subunit 1 2 2
MIRT665214 RBM22 RNA binding motif protein 22 2 2
MIRT665254 ZNF286B zinc finger protein 286B 2 2
MIRT665268 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT665606 TTC39A tetratricopeptide repeat domain 39A 2 2
MIRT665830 TIMELESS timeless circadian clock 2 2
MIRT666201 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT666546 RNF115 ring finger protein 115 2 2
MIRT666602 REEP3 receptor accessory protein 3 2 2
MIRT666862 POU2F3 POU class 2 homeobox 3 2 4
MIRT666886 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT667158 NRXN3 neurexin 3 2 2
MIRT667252 NEK9 NIMA related kinase 9 2 2
MIRT667419 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT667434 METTL8 methyltransferase like 8 2 2
MIRT668023 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT668062 GPR75 G protein-coupled receptor 75 2 2
MIRT668070 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT668607 EHD4 EH domain containing 4 2 4
MIRT668694 DNAL1 dynein axonemal light chain 1 2 2
MIRT668782 DAAM1 dishevelled associated activator of morphogenesis 1 2 2
MIRT669037 CHEK1 checkpoint kinase 1 2 2
MIRT669044 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT669156 CCNG1 cyclin G1 2 2
MIRT670090 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT670206 SLC24A4 solute carrier family 24 member 4 2 2
MIRT672488 FUS FUS RNA binding protein 2 2
MIRT673830 SLC11A2 solute carrier family 11 member 2 2 2
MIRT675481 VEGFC vascular endothelial growth factor C 2 2
MIRT675634 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT677913 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678420 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678626 OLFML2A olfactomedin like 2A 2 2
MIRT678791 NUPL2 nucleoporin like 2 2 2
MIRT679561 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT680743 CA5B carbonic anhydrase 5B 2 2
MIRT682481 LIX1L limb and CNS expressed 1 like 2 4
MIRT682701 PSMD9 proteasome 26S subunit, non-ATPase 9 2 2
MIRT682759 MDM2 MDM2 proto-oncogene 2 2
MIRT682811 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682847 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT682896 XIAP X-linked inhibitor of apoptosis 2 2
MIRT682916 FAM73A mitoguardin 1 2 2
MIRT682935 ZNF292 zinc finger protein 292 2 2
MIRT682953 RPL12 ribosomal protein L12 2 2
MIRT682972 NF2 neurofibromin 2 2 2
MIRT683033 SUSD5 sushi domain containing 5 2 2
MIRT683081 A1BG alpha-1-B glycoprotein 2 2
MIRT683105 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT686640 TMEM184C transmembrane protein 184C 2 2
MIRT687444 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688401 EMC8 ER membrane protein complex subunit 8 2 2
MIRT688886 C3orf70 chromosome 3 open reading frame 70 2 2
MIRT689148 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 2 2
MIRT689234 RPS19 ribosomal protein S19 2 2
MIRT689306 C5AR2 complement component 5a receptor 2 2 2
MIRT689364 ZNF101 zinc finger protein 101 2 2
MIRT689498 SCARF1 scavenger receptor class F member 1 2 2
MIRT689655 RBM23 RNA binding motif protein 23 2 2
MIRT689897 SOD2 superoxide dismutase 2 2 2
MIRT690150 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT690601 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690805 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT690946 GLG1 golgi glycoprotein 1 2 2
MIRT691388 ATP13A4 ATPase 13A4 2 2
MIRT691408 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT692175 LRRC3C leucine rich repeat containing 3C 2 2
MIRT692235 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693283 GINM1 glycoprotein integral membrane 1 2 2
MIRT693439 TPGS1 tubulin polyglutamylase complex subunit 1 2 2
MIRT693460 HIST1H2AG histone cluster 1 H2A family member g 2 2
MIRT693768 ZNF383 zinc finger protein 383 2 2
MIRT694018 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694236 ZNF749 zinc finger protein 749 2 2
MIRT694321 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694347 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT694430 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT695763 WDR35 WD repeat domain 35 2 2
MIRT696167 TIPIN TIMELESS interacting protein 2 2
MIRT696417 DOCK7 dedicator of cytokinesis 7 2 2
MIRT696543 C3 complement C3 2 2
MIRT696998 CCDC80 coiled-coil domain containing 80 2 2
MIRT697232 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697806 UBXN2A UBX domain protein 2A 2 2
MIRT697944 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT698161 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT698778 STK4 serine/threonine kinase 4 2 2
MIRT700259 RBM12B RNA binding motif protein 12B 2 2
MIRT700970 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT701251 NUP35 nucleoporin 35 2 2
MIRT701607 MYPN myopalladin 2 2
MIRT702457 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702613 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT702691 IRGQ immunity related GTPase Q 2 2
MIRT702934 HMX3 H6 family homeobox 3 2 2
MIRT702991 HERPUD2 HERPUD family member 2 2 2
MIRT703148 GPR137C G protein-coupled receptor 137C 2 2
MIRT703980 EMC1 ER membrane protein complex subunit 1 2 2
MIRT704569 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT705065 C4orf32 family with sequence similarity 241 member A 2 2
MIRT705447 ATL2 atlastin GTPase 2 2 2
MIRT705856 AFF3 AF4/FMR2 family member 3 2 2
MIRT705886 ADIPOR2 adiponectin receptor 2 2 2
MIRT714370 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT715784 PHF12 PHD finger protein 12 2 2
MIRT715864 KIAA0101 PCNA clamp associated factor 2 2
MIRT715947 NUP93 nucleoporin 93 2 2
MIRT716132 THOC5 THO complex 5 2 2
MIRT717084 EBF4 early B-cell factor 4 2 2
MIRT725424 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT736091 GREM1 gremlin 1, DAN family BMP antagonist 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4793 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4793-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4793-3p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4793-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

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