pre-miRNA Information
pre-miRNA hsa-mir-4793   
Genomic Coordinates chr3: 48644194 - 48644280
Description Homo sapiens miR-4793 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4793-3p
Sequence 58| UCUGCACUGUGAGUUGGCUGGCU |80
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5899925 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs779602935 6 dbSNP
rs757908486 7 dbSNP
rs1422853760 15 dbSNP
rs377721296 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TRAPPC2   
Synonyms MIP2A, SEDL, SEDT, TRAPPC2P1, TRS20, ZNF547L, hYP38334
Description trafficking protein particle complex 2
Transcript NM_001011658   
Other Transcripts NM_001128835 , NM_014563   
Expression
Putative miRNA Targets on TRAPPC2
3'UTR of TRAPPC2
(miRNA target sites are highlighted)
>TRAPPC2|NM_001011658|3'UTR
   1 ATGCAGAAAATTCCAAAATAAATGATGTCACCACAATGGTGTATACTCAGGAATGTGTACATTGTAAGTTACTTGATTAA
  81 ATAGCCTGGAAAACTTTTGTGTATTCTCAGCTTATCTAAACCTAATGAAATTCCTTTTATATTTAAAAATAGTACATTCT
 161 GTCTCATGTCACGTATCAATAGATCAATTGGTATTTCCTTGTGAACAGTGTTATTTATAAAGAGTTCATTATCAATAATC
 241 ATGTTTTTTTTTTTTTTTTTTTTCTGATACAGAGTCTCACTCTGTTGCCAGGCTGGAGTGCAGTGGCGCAATCTTGGCTC
 321 ACTGCAACCTCCGCCTCCCAGGTTCAGGCGATTCTCCTGCCTCAGCCTCCAAGTAGCTGGGACTACAGGCGCGTGCCACC
 401 ACGCCCGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATATTGGTCAGGCTGGTCTTGAACTCCTGACCTCG
 481 TGATCTGCCCGCCTTGGCCTCCCAAAGTACTGGGATTACAGGCGTGAGCCACCGTGCCCAACCATGAAATATTTTTACTT
 561 AAAAATTGGGAATAAGCTCGCTTTTTTTTTTTTTGAGATGGAGTCTTGCTCCTGTTGTGCAGGCTGTAGTGCAGTGGCAC
 641 GATCTTGGCTCACTGCAACCTCCACCTCCCGGGTTCAAGCAATTCTCCTTCTTCAGCCTCCCGAGTAGCTGAGATTATAG
 721 GCGTGCACCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATATTGGTCAGGCTGGTCTTGAA
 801 CTCCTGACCTCGTGATCCACCCACCTCAGGAAGTGCTGGGATTACAGGCGTGTGAGCCACCACGCCCGGCCATGAAATAT
 881 TTTTACTTAAAAATTGGGAATAAGCTTTTTGGTTTTTTGTGGGTTTTTGTTTTTGTTTTTTGTTTTTTGTTTTTTTGAGA
 961 TGGAGTCTTGCTCCTGTTGTGCAGGCTGGAGTGCAGTGGCACAGTCTTGGCTCACTGCAACCTCCACCTCCTGGGTTCAA
1041 GCAATTCTCCTTCTTCAGCCTCCCGAGTAGCTGGGATTACAGGCATGCACCACCACACCTGGCTAATTTTTGTGTTTTTA
1121 GTAGAGACGGGGTTTCGCTATTTTGGCCGGGCTGGTTTCAAACTCCTGACCTCAGTTGATCCACCCGCCTCAGCCTCCCA
1201 AAGTGCTAGGATTACAGGCATGAACCACCGTGCCCGGCCAGGAATAAGCTTTTGACTTACCCAATTCAGATAGGTTGATC
1281 TTTGGGGTTTTTTTTTTTTTTTTGAGATGGAGTTTCGCTCTGTTGTCCAGGCTGGAGTGCAATGGCAGTTGTTTCACCGT
1361 AACCTCTGCCTCCTGACTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGTGC
1441 CCGGCCCAGATAGGTTGATCTTAATGTAACAACCCAAAAATAAATGTCATAGTCAAGATTTGGTAGATAAATTTAAAATT
1521 AAAATATTCTGCAGTTGGGAGTGAAATGTGATAGCACATACGTTGACATTATGCATTTAGAGATGTTATAAAAATGTATA
1601 GGCAGTATACACAGCACTACTCAAGAAGCCAAAGAAACACTTGTGCAGTGCTAAGTGTCACATGTCTGCTTCCACCAGAG
1681 GCTAGGAATAGTGATCCTGCTATAATGTGAGAACCCAAATCATGTTTATAAAATAGGACGCTGGGAGCAGTTGCAGGCCA
1761 CAGTGAAGTGTGTTGCTTCTGTCACTTTATATTCTTATATTTCCTTTCCCTCAGACAGTAAACTGTTGATACTCGTACTT
1841 GTAAAAAATTGTAAGGCAATTTTTAGTATTGTTGTCAAAGAAAAGCTTGGATTACATTAACATTTGTATTCAGTCTTTTA
1921 GGTGATACACCAGAGGGGGCTGGGAATTGTCTCTTTGTTCCTATAAGTAGATCTTAATGTAAAATAGTAAATGTCCATTG
2001 AAAAGCAAGTAATACAGCCTGTGCTAATTGGGAGCACTTGAACAATTTTGTTCCATTCTGAGTAACTTTTGAGCAAGTAA
2081 TTCTAAGCTTTGTCTTGTATCCTTGTGTGAAATTGCATAATTTTTACCCTATTTGATTTCTTAAATAAAGATGTTTGCTC
2161 AAGATAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucgguCGGUUGAGUGUCACGUCu 5'
               ||||:  :: ||||||| 
Target 5' ctgttGCCAGGCTGGAGTGCAGt 3'
282 - 304 154.00 -18.40
2
miRNA  3' ucgguCGGUUGAGUGUCACGUCu 5'
               || ::|| ::||||||| 
Target 5' gttgtGCAGGCT-GTAGTGCAGt 3'
614 - 635 153.00 -15.00
3
miRNA  3' ucgguCGGUUGAGUGUCACGUCu 5'
               || ::|| : ||||||| 
Target 5' gttgtGCAGGCT-GGAGTGCAGt 3'
976 - 997 149.00 -13.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
1203558 29 ClinVar
367995 179 ClinVar
912340 187 ClinVar
367994 243 ClinVar
912339 263 ClinVar
1178039 264 ClinVar
1187067 264 ClinVar
367993 264 ClinVar
367992 267 ClinVar
912338 302 ClinVar
912337 308 ClinVar
367991 323 ClinVar
915066 332 ClinVar
915065 333 ClinVar
367990 393 ClinVar
367989 394 ClinVar
367988 435 ClinVar
367987 465 ClinVar
367986 490 ClinVar
914539 522 ClinVar
914538 546 ClinVar
367985 641 ClinVar
914537 670 ClinVar
914536 690 ClinVar
367984 703 ClinVar
914535 709 ClinVar
367983 710 ClinVar
913424 712 ClinVar
367982 752 ClinVar
367981 830 ClinVar
367980 849 ClinVar
913423 867 ClinVar
367979 942 ClinVar
913422 949 ClinVar
367976 957 ClinVar
367977 957 ClinVar
367978 957 ClinVar
367975 958 ClinVar
913063 989 ClinVar
913062 1032 ClinVar
367974 1050 ClinVar
367973 1052 ClinVar
913061 1128 ClinVar
367972 1191 ClinVar
367971 1229 ClinVar
913060 1287 ClinVar
915023 1288 ClinVar
367970 1304 ClinVar
915021 1436 ClinVar
915022 1436 ClinVar
915020 1442 ClinVar
915019 1443 ClinVar
915018 1486 ClinVar
367969 1599 ClinVar
915017 1634 ClinVar
367968 1739 ClinVar
367967 1849 ClinVar
914500 1963 ClinVar
367966 2035 ClinVar
367965 2060 ClinVar
367964 2110 ClinVar
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1424449402 3 dbSNP
rs1419745276 4 dbSNP
rs768680616 13 dbSNP
rs1474253260 19 dbSNP
rs146231075 29 dbSNP
rs369102520 41 dbSNP
rs901009271 44 dbSNP
rs1490802453 48 dbSNP
rs1274410269 54 dbSNP
rs756953417 56 dbSNP
rs1036843078 68 dbSNP
rs1192209568 74 dbSNP
rs939946129 82 dbSNP
rs370024078 84 dbSNP
rs909785019 90 dbSNP
rs1192484725 98 dbSNP
rs1371407270 99 dbSNP
rs1476470403 115 dbSNP
rs1168412027 148 dbSNP
rs984550398 150 dbSNP
rs1459649846 154 dbSNP
rs1327706004 167 dbSNP
rs113885396 168 dbSNP
rs1392949014 172 dbSNP
rs185982935 173 dbSNP
rs926593303 175 dbSNP
rs938009151 175 dbSNP
rs1057515796 179 dbSNP
rs1227595073 184 dbSNP
rs1427810998 187 dbSNP
rs180933515 188 dbSNP
rs1377195591 206 dbSNP
rs1469020956 209 dbSNP
rs1204768059 215 dbSNP
rs1172663570 220 dbSNP
rs1465059077 222 dbSNP
rs1021094699 225 dbSNP
rs1417029725 228 dbSNP
rs1474198848 229 dbSNP
rs989045182 236 dbSNP
rs1375596673 240 dbSNP
rs866164023 241 dbSNP
rs1472696816 242 dbSNP
rs1057515795 243 dbSNP
rs1159343698 244 dbSNP
rs1286747115 244 dbSNP
rs1456573763 244 dbSNP
rs988314521 246 dbSNP
rs1486942094 248 dbSNP
rs958555541 248 dbSNP
rs763417134 249 dbSNP
rs1199962334 250 dbSNP
rs1342908312 251 dbSNP
rs1262532559 252 dbSNP
rs776085440 252 dbSNP
rs1032593772 253 dbSNP
rs1259151692 253 dbSNP
rs1473269117 254 dbSNP
rs1328744609 262 dbSNP
rs377210137 263 dbSNP
rs1057515794 264 dbSNP
rs1156721549 264 dbSNP
rs1189981954 264 dbSNP
rs1258212041 264 dbSNP
rs1418267399 264 dbSNP
rs1484612128 264 dbSNP
rs866725241 264 dbSNP
rs1315325576 265 dbSNP
rs759675896 265 dbSNP
rs1305340439 266 dbSNP
rs1318900325 266 dbSNP
rs1391139644 266 dbSNP
rs1057515793 267 dbSNP
rs1334683240 272 dbSNP
rs1279966034 274 dbSNP
rs1394979409 279 dbSNP
rs1213177507 280 dbSNP
rs776679275 283 dbSNP
rs1280920430 284 dbSNP
rs1399485509 288 dbSNP
rs1000304188 298 dbSNP
rs771210112 302 dbSNP
rs1252407806 303 dbSNP
rs889461505 306 dbSNP
rs1192600882 307 dbSNP
rs1457504825 308 dbSNP
rs1436007013 311 dbSNP
rs1173748624 312 dbSNP
rs1410681570 315 dbSNP
rs1157415756 318 dbSNP
rs1057515792 323 dbSNP
rs1375979640 329 dbSNP
rs1448063407 332 dbSNP
rs747205131 333 dbSNP
rs1369105862 340 dbSNP
rs1236539578 347 dbSNP
rs1281142881 349 dbSNP
rs1369578157 350 dbSNP
rs774185779 363 dbSNP
rs1202346593 383 dbSNP
rs768520211 390 dbSNP
rs997953410 391 dbSNP
rs1209441793 392 dbSNP
rs748998980 393 dbSNP
rs780042144 394 dbSNP
rs190880115 400 dbSNP
rs767105213 402 dbSNP
rs939849428 406 dbSNP
rs745424083 407 dbSNP
rs888398525 414 dbSNP
rs1338620986 418 dbSNP
rs1443380264 418 dbSNP
rs1361339365 426 dbSNP
rs1212930971 428 dbSNP
rs368897746 435 dbSNP
rs1213372261 442 dbSNP
rs1308038752 447 dbSNP
rs1464672028 447 dbSNP
rs1232400116 448 dbSNP
rs1271050930 453 dbSNP
rs1048298183 456 dbSNP
rs780841342 465 dbSNP
rs1435116198 466 dbSNP
rs1484596716 477 dbSNP
rs1387480715 479 dbSNP
rs1318071173 480 dbSNP
rs1478449429 485 dbSNP
rs1164572428 486 dbSNP
rs186451206 490 dbSNP
rs1415033180 491 dbSNP
rs1324423550 492 dbSNP
rs758956094 495 dbSNP
rs751614652 496 dbSNP
rs1290732250 498 dbSNP
rs1340986607 499 dbSNP
rs1232609525 501 dbSNP
rs1291437220 508 dbSNP
rs751234026 509 dbSNP
rs1228724279 515 dbSNP
rs1283084184 516 dbSNP
rs1314799550 518 dbSNP
rs937892881 523 dbSNP
rs1163023232 524 dbSNP
rs1187840919 526 dbSNP
rs1485095284 526 dbSNP
rs1472136689 527 dbSNP
rs1375223588 533 dbSNP
rs1189314049 534 dbSNP
rs1448893343 535 dbSNP
rs1399187036 538 dbSNP
rs1246458077 540 dbSNP
rs1215835258 541 dbSNP
rs777240291 546 dbSNP
rs1414308026 559 dbSNP
rs1290403199 568 dbSNP
rs926645734 569 dbSNP
rs1448434195 573 dbSNP
rs1278767667 579 dbSNP
rs1370655161 580 dbSNP
rs1225105923 582 dbSNP
rs1286354605 588 dbSNP
rs1346488731 594 dbSNP
rs1208151231 595 dbSNP
rs1486952587 595 dbSNP
rs200411646 595 dbSNP
rs758373736 595 dbSNP
rs1354181012 596 dbSNP
rs1299664981 597 dbSNP
rs758821177 605 dbSNP
rs1232667702 609 dbSNP
rs1363876210 614 dbSNP
rs1179156613 616 dbSNP
rs1294734953 627 dbSNP
rs1434152631 631 dbSNP
rs1171887431 636 dbSNP
rs1377147471 638 dbSNP
rs1442719784 639 dbSNP
rs1327865568 640 dbSNP
rs752947538 641 dbSNP
rs1323321307 642 dbSNP
rs1444170115 644 dbSNP
rs1309487257 647 dbSNP
rs1369825289 649 dbSNP
rs1403898592 656 dbSNP
rs1046355786 662 dbSNP
rs1399291120 663 dbSNP
rs1169741737 664 dbSNP
rs1305004098 665 dbSNP
rs1429642104 670 dbSNP
rs1388452728 671 dbSNP
rs765832342 676 dbSNP
rs949502808 683 dbSNP
rs1195566992 684 dbSNP
rs1200963633 690 dbSNP
rs1478481249 690 dbSNP
rs1454016664 695 dbSNP
rs1191767366 701 dbSNP
rs766432035 702 dbSNP
rs554971161 703 dbSNP
rs181594125 709 dbSNP
rs141763219 710 dbSNP
rs1331815414 711 dbSNP
rs1276471670 712 dbSNP
rs1438267412 716 dbSNP
rs1205840982 718 dbSNP
rs1331166602 721 dbSNP
rs1341349454 722 dbSNP
rs1273141016 723 dbSNP
rs778773488 723 dbSNP
rs1271939839 729 dbSNP
rs1220390643 735 dbSNP
rs1220800418 736 dbSNP
rs1367889183 738 dbSNP
rs1057515791 752 dbSNP
rs1212056662 760 dbSNP
rs1434805107 764 dbSNP
rs1337945342 765 dbSNP
rs1308996192 776 dbSNP
rs958224840 789 dbSNP
rs1429737102 801 dbSNP
rs925410000 811 dbSNP
rs1371216348 812 dbSNP
rs986383215 818 dbSNP
rs1964206 830 dbSNP
rs1416891036 835 dbSNP
rs1459730895 845 dbSNP
rs112880750 849 dbSNP
rs1391054094 850 dbSNP
rs1028005447 852 dbSNP
rs1424761747 859 dbSNP
rs369559004 863 dbSNP
rs1471265901 867 dbSNP
rs761003713 868 dbSNP
rs1253774808 872 dbSNP
rs1334584619 875 dbSNP
rs965146241 881 dbSNP
rs1182621773 908 dbSNP
rs1357344408 910 dbSNP
rs772122128 912 dbSNP
rs1249460673 917 dbSNP
rs1211652883 919 dbSNP
rs1259746958 919 dbSNP
rs762816660 924 dbSNP
rs1312224118 925 dbSNP
rs28721476 929 dbSNP
rs1474086049 933 dbSNP
rs775130666 934 dbSNP
rs1386493009 935 dbSNP
rs766111286 935 dbSNP
rs1217168619 936 dbSNP
rs1419843661 942 dbSNP
rs767782257 942 dbSNP
rs768568672 942 dbSNP
rs1330760662 945 dbSNP
rs1355414200 948 dbSNP
rs1413265587 949 dbSNP
rs2106707 949 dbSNP
rs57103709 950 dbSNP
rs1491485921 951 dbSNP
rs1349196579 952 dbSNP
rs1279473030 953 dbSNP
rs1484663690 954 dbSNP
rs1183324705 955 dbSNP
rs1418356873 955 dbSNP
rs1179213283 956 dbSNP
rs1259954019 956 dbSNP
rs1375309874 957 dbSNP
rs200562804 957 dbSNP
rs769833544 957 dbSNP
rs1057515790 958 dbSNP
rs202065790 958 dbSNP
rs201490079 959 dbSNP
rs200414881 960 dbSNP
rs1305068892 964 dbSNP
rs1449359101 989 dbSNP
rs1358701912 1003 dbSNP
rs1332254647 1004 dbSNP
rs1439931750 1006 dbSNP
rs1015338550 1013 dbSNP
rs1392716606 1020 dbSNP
rs1434456878 1022 dbSNP
rs1402724398 1027 dbSNP
rs1412886464 1032 dbSNP
rs1378759401 1038 dbSNP
rs184686872 1050 dbSNP
rs780151683 1051 dbSNP
rs5979952 1052 dbSNP
rs1447803228 1054 dbSNP
rs1325564441 1057 dbSNP
rs1365566859 1063 dbSNP
rs1472115791 1064 dbSNP
rs1301840539 1065 dbSNP
rs1004486362 1067 dbSNP
rs1409709369 1074 dbSNP
rs1183572173 1080 dbSNP
rs1483524720 1085 dbSNP
rs1236447232 1091 dbSNP
rs1489157548 1093 dbSNP
rs1191299499 1100 dbSNP
rs1428456940 1103 dbSNP
rs1168899000 1116 dbSNP
rs1207410409 1119 dbSNP
rs181174972 1128 dbSNP
rs1466524449 1129 dbSNP
rs1048682861 1136 dbSNP
rs1228195481 1137 dbSNP
rs1327574929 1140 dbSNP
rs1315246354 1148 dbSNP
rs1229449097 1159 dbSNP
rs1002092464 1167 dbSNP
rs905108001 1171 dbSNP
rs1318306468 1178 dbSNP
rs1029257722 1183 dbSNP
rs1301169887 1186 dbSNP
rs1323169969 1187 dbSNP
rs189643332 1187 dbSNP
rs1221588020 1188 dbSNP
rs1057515789 1191 dbSNP
rs1484646906 1203 dbSNP
rs1389693755 1210 dbSNP
rs1192115094 1212 dbSNP
rs1266039499 1219 dbSNP
rs141809461 1229 dbSNP
rs757975308 1235 dbSNP
rs1411820397 1236 dbSNP
rs1455817209 1244 dbSNP
rs1407296109 1271 dbSNP
rs1343267311 1278 dbSNP
rs1165831875 1287 dbSNP
rs1344670547 1288 dbSNP
rs1417991590 1288 dbSNP
rs1166633585 1293 dbSNP
rs1424396652 1303 dbSNP
rs1228520225 1304 dbSNP
rs1299925977 1304 dbSNP
rs1341078023 1304 dbSNP
rs1467195587 1304 dbSNP
rs35590746 1304 dbSNP
rs558114277 1304 dbSNP
rs865815058 1304 dbSNP
rs1350820072 1305 dbSNP
rs1218221758 1306 dbSNP
rs1288715140 1307 dbSNP
rs1246140925 1311 dbSNP
rs1412896794 1314 dbSNP
rs1179628309 1316 dbSNP
rs1450746655 1321 dbSNP
rs1248070933 1327 dbSNP
rs1207769327 1333 dbSNP
rs1210545123 1337 dbSNP
rs879233903 1342 dbSNP
rs184278401 1348 dbSNP
rs1046405564 1349 dbSNP
rs1136276 1352 dbSNP
rs1136277 1353 dbSNP
rs1136278 1358 dbSNP
rs1222681703 1359 dbSNP
rs878988409 1360 dbSNP
rs1321655229 1368 dbSNP
rs1160565652 1375 dbSNP
rs1136280 1385 dbSNP
rs566484686 1386 dbSNP
rs1434040356 1396 dbSNP
rs1301742105 1409 dbSNP
rs774359940 1415 dbSNP
rs1448530587 1421 dbSNP
rs1278564634 1424 dbSNP
rs1366079270 1426 dbSNP
rs1296944414 1427 dbSNP
rs1433242775 1431 dbSNP
rs192328990 1436 dbSNP
rs1058886 1437 dbSNP
rs1058887 1439 dbSNP
rs771455096 1442 dbSNP
rs148298471 1443 dbSNP
rs766836189 1449 dbSNP
rs1444468134 1466 dbSNP
rs1349256395 1468 dbSNP
rs1058888 1473 dbSNP
rs1058889 1477 dbSNP
rs1058890 1481 dbSNP
rs1211293274 1484 dbSNP
rs187740735 1486 dbSNP
rs1456613751 1501 dbSNP
rs1058891 1510 dbSNP
rs1180522351 1510 dbSNP
rs1380984364 1518 dbSNP
rs1058892 1519 dbSNP
rs1431526750 1527 dbSNP
rs1170706475 1533 dbSNP
rs1058893 1539 dbSNP
rs914009383 1540 dbSNP
rs1058894 1550 dbSNP
rs756413153 1551 dbSNP
rs1327967450 1552 dbSNP
rs184839802 1561 dbSNP
rs1064528 1564 dbSNP
rs1058895 1568 dbSNP
rs1448522672 1569 dbSNP
rs1331705207 1580 dbSNP
rs1369575592 1595 dbSNP
rs146362855 1599 dbSNP
rs1058896 1600 dbSNP
rs192015551 1605 dbSNP
rs1058897 1612 dbSNP
rs1192160400 1632 dbSNP
rs187464655 1634 dbSNP
rs1264018147 1635 dbSNP
rs1220110383 1641 dbSNP
rs1257835389 1652 dbSNP
rs1207988293 1655 dbSNP
rs1200752054 1664 dbSNP
rs1343484724 1685 dbSNP
rs1451085061 1690 dbSNP
rs1196871934 1702 dbSNP
rs1478315780 1709 dbSNP
rs1167325309 1723 dbSNP
rs1421208177 1738 dbSNP
rs7716 1739 dbSNP
rs536771371 1758 dbSNP
rs925492194 1770 dbSNP
rs1384527080 1794 dbSNP
rs1333276274 1797 dbSNP
rs776739699 1797 dbSNP
rs1314180265 1798 dbSNP
rs1278191707 1808 dbSNP
rs1316412822 1820 dbSNP
rs1220896370 1822 dbSNP
rs1302193775 1827 dbSNP
rs1386393480 1830 dbSNP
rs770925068 1834 dbSNP
rs1208066491 1835 dbSNP
rs1292102504 1841 dbSNP
rs1301048971 1844 dbSNP
rs200158505 1849 dbSNP
rs1261005107 1869 dbSNP
rs1371013050 1872 dbSNP
rs1167427728 1876 dbSNP
rs1367463505 1928 dbSNP
rs1459979437 1928 dbSNP
rs953639471 1949 dbSNP
rs138407104 1955 dbSNP
rs147081718 1963 dbSNP
rs923496010 1967 dbSNP
rs1432217628 1968 dbSNP
rs1267287113 1976 dbSNP
rs1402190855 1987 dbSNP
rs1279234109 1992 dbSNP
rs1184781879 1994 dbSNP
rs976452261 1997 dbSNP
rs754592922 2002 dbSNP
rs375865683 2013 dbSNP
rs1242881108 2015 dbSNP
rs965064485 2024 dbSNP
rs1357121577 2027 dbSNP
rs1216016499 2034 dbSNP
rs41297317 2035 dbSNP
rs1489233270 2040 dbSNP
rs1216998161 2044 dbSNP
rs1255201162 2045 dbSNP
rs373623026 2048 dbSNP
rs1421905646 2050 dbSNP
rs1251656319 2052 dbSNP
rs878936844 2056 dbSNP
rs1058907 2058 dbSNP
rs1057515788 2060 dbSNP
rs1003985739 2062 dbSNP
rs1203140599 2068 dbSNP
rs1058911 2083 dbSNP
rs1156335012 2088 dbSNP
rs952542582 2092 dbSNP
rs1422071607 2098 dbSNP
rs1299418344 2099 dbSNP
rs199924403 2110 dbSNP
rs1394706755 2112 dbSNP
rs755369088 2113 dbSNP
rs1341331306 2119 dbSNP
rs1239435280 2121 dbSNP
rs1256641671 2122 dbSNP
rs1356019132 2127 dbSNP
rs1240780740 2132 dbSNP
rs1136286 2140 dbSNP
rs1255381652 2150 dbSNP
rs1482139862 2152 dbSNP
rs749591674 2152 dbSNP
rs1256370996 2153 dbSNP
rs1457043332 2153 dbSNP
rs1176167583 2160 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucgguCGGUUGAGUGUCACGUCu 5'
               ||||:  :: ||||||| 
Target 5' cuguuGCCAGGCUGGAGUGCAGu 3'
5 - 27
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084068. RNA binding protein: AGO2. Condition:CLIP_noemetine_SigmaAb HITS-CLIP data was present in GSM1084079. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Cardiac Tissues
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM2202479. RNA binding protein: AGO2. Condition:S4_LV_29yo_Male_AGO2_bound_RNA ...

- Spengler RM; Zhang X; Cheng C; McLendon JM; et al., 2016, Nucleic acids research.

Article - Spengler RM; Zhang X; Cheng C; McLendon JM; et al.
- Nucleic acids research, 2016
MicroRNAs (miRs) have emerged as key biological effectors in human health and disease. These small noncoding RNAs are incorporated into Argonaute (Ago) proteins, where they direct post-transcriptional gene silencing via base-pairing with target transcripts. Although miRs have become intriguing biological entities and attractive therapeutic targets, the translational impacts of miR research remain limited by a paucity of empirical miR targeting data, particularly in human primary tissues. Here, to improve our understanding of the diverse roles miRs play in cardiovascular function and disease, we applied high-throughput methods to globally profile miR:target interactions in human heart tissues. We deciphered Ago2:RNA interactions using crosslinking immunoprecipitation coupled with high-throughput sequencing (HITS-CLIP) to generate the first transcriptome-wide map of miR targeting events in human myocardium, detecting 4000 cardiac Ago2 binding sites across >2200 target transcripts. Our initial exploration of this interactome revealed an abundance of miR target sites in gene coding regions, including several sites pointing to new miR-29 functions in regulating cardiomyocyte calcium, growth and metabolism. Also, we uncovered several clinically-relevant interactions involving common genetic variants that alter miR targeting events in cardiomyopathy-associated genes. Overall, these data provide a critical resource for bolstering translational miR research in heart, and likely beyond.
LinkOut: [PMID: 27418678]
CLIP-seq Support 1 for dataset GSM4903829
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / CTLTD_shCTL_a
Location of target site NM_014563 | 3UTR | CACUCUGUUGCCAGGCUGGAGUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903831
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / 124TD_shELAVL3_a
Location of target site NM_014563 | 3UTR | UGUUGCCAGGCUGGAGUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_014563 | 3UTR | UUUUUUUGAGAUGGAGUCUUGCUCCUGUUGUGCAGGCUGGAGUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_014563 | 3UTR | UUGUUUUUUUGAGAUGGAGUCUUGCUCCUGUUGUGCAGGCUGGAGUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_014563 | 3UTR | GUUUUUUGUUUUUUUGAGAUGGAGUCUUGCUCCUGUUGUGCAGGCUGGAGUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_014563 | 3UTR | UUUGUUUUUUUGAGAUGGAGUCUUGCUCCUGUUGUGCAGGCUGGAGUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_014563 | 3UTR | GUUUUUUUGAGAUGGAGUCUUGCUCCUGUUGUGCAGGCUGGAGUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_014563 | 3UTR | UGUUUUUUUGAGAUGGAGUCUUGCUCCUGUUGUGCAGGCUGGAGUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 9 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000453655.2 | 3UTR | CACUCUGUUGCCAGGCUGGAGUGCAGUGGCGCAAUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
CLIP-seq Support 10 for dataset GSM1084068
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_SigmaAb
Location of target site ENST00000453655.2 | 3UTR | GCAGGCUGGAGUGCAGUGGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 11 for dataset GSM1084079
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_AbnovaAb
Location of target site ENST00000453655.2 | 3UTR | UGCCAGGCUGGAGUGCAGUGGCGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
296 hsa-miR-4793-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092332 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT131237 ATG2A autophagy related 2A 2 2
MIRT145926 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT206559 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT226455 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT337662 ZNF695 zinc finger protein 695 2 2
MIRT405828 SIX4 SIX homeobox 4 2 2
MIRT455113 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT456756 TMEM239 transmembrane protein 239 2 4
MIRT457974 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT458173 LYRM4 LYR motif containing 4 2 4
MIRT458245 SLC9A7 solute carrier family 9 member A7 2 2
MIRT466145 TMEM120B transmembrane protein 120B 2 2
MIRT474981 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT475601 HMGB2 high mobility group box 2 2 4
MIRT480759 BMP3 bone morphogenetic protein 3 2 4
MIRT481156 AVL9 AVL9 cell migration associated 2 2
MIRT482155 AK2 adenylate kinase 2 2 2
MIRT488386 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT496575 KIF18B kinesin family member 18B 2 2
MIRT498411 TXNDC16 thioredoxin domain containing 16 2 4
MIRT504547 ZNF417 zinc finger protein 417 2 6
MIRT505417 TCF7L2 transcription factor 7 like 2 2 2
MIRT509349 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 6
MIRT512164 CD164 CD164 molecule 2 6
MIRT517238 PRIM1 DNA primase subunit 1 2 2
MIRT518671 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT519298 MLH1 mutL homolog 1 2 2
MIRT523662 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT525452 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539847 ZNF766 zinc finger protein 766 2 2
MIRT540076 SSH3 slingshot protein phosphatase 3 2 2
MIRT540320 PIGR polymeric immunoglobulin receptor 2 2
MIRT540548 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT540759 UTP6 UTP6, small subunit processome component 2 2
MIRT541545 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT541553 SLC35E1 solute carrier family 35 member E1 2 2
MIRT541666 ATP8B3 ATPase phospholipid transporting 8B3 2 4
MIRT541722 TFDP2 transcription factor Dp-2 2 2
MIRT541800 DUSP28 dual specificity phosphatase 28 2 2
MIRT541816 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT541907 VWA7 von Willebrand factor A domain containing 7 2 2
MIRT542154 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT542207 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542233 FUT9 fucosyltransferase 9 2 2
MIRT542320 SERPING1 serpin family G member 1 2 2
MIRT542369 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542476 APOC3 apolipoprotein C3 2 2
MIRT542641 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542660 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT542749 PRRG4 proline rich and Gla domain 4 2 4
MIRT542789 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT545442 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT546206 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT552270 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552655 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT554134 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT556795 KIAA1958 KIAA1958 2 2
MIRT564762 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT569428 STX7 syntaxin 7 2 2
MIRT573245 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT607390 LANCL3 LanC like 3 2 2
MIRT607430 NOTCH2NL notch 2 N-terminal like 2 2
MIRT607452 ZNF543 zinc finger protein 543 2 2
MIRT607580 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT607748 ANGPT4 angiopoietin 4 2 2
MIRT607907 SPRYD4 SPRY domain containing 4 2 2
MIRT608703 GMPR guanosine monophosphate reductase 2 2
MIRT612127 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 2 2
MIRT612786 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT616692 LPL lipoprotein lipase 2 2
MIRT617045 ZNF610 zinc finger protein 610 2 2
MIRT617091 ZNF43 zinc finger protein 43 2 2
MIRT617314 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT617355 MELK maternal embryonic leucine zipper kinase 2 2
MIRT617486 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT617579 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT617669 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT617722 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617893 PTCHD3 patched domain containing 3 2 2
MIRT617982 ZNF234 zinc finger protein 234 2 4
MIRT618434 MYLK3 myosin light chain kinase 3 2 4
MIRT618732 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT619045 CASS4 Cas scaffolding protein family member 4 2 2
MIRT619573 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT619671 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT619887 ABHD17B abhydrolase domain containing 17B 2 2
MIRT620519 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT620535 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT620996 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT621304 YIPF4 Yip1 domain family member 4 2 2
MIRT622086 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622168 SMYD1 SET and MYND domain containing 1 2 2
MIRT622543 PXMP4 peroxisomal membrane protein 4 2 2
MIRT622761 PGM3 phosphoglucomutase 3 2 2
MIRT622885 PDCL3 phosducin like 3 2 4
MIRT623130 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 2 2
MIRT624840 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT625047 MBD3 methyl-CpG binding domain protein 3 2 2
MIRT625059 ZNF556 zinc finger protein 556 2 2
MIRT625508 PPAPDC1A phospholipid phosphatase 4 2 2
MIRT625573 ANKRD42 ankyrin repeat domain 42 2 2
MIRT626133 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT626327 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626765 CDC14B cell division cycle 14B 2 2
MIRT626798 CSE1L chromosome segregation 1 like 2 2
MIRT627212 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT627225 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT627256 XKR4 XK related 4 2 2
MIRT628190 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT628466 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT628627 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT629040 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT630847 ACACB acetyl-CoA carboxylase beta 2 2
MIRT631721 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT632264 USP1 ubiquitin specific peptidase 1 2 4
MIRT632571 POLQ DNA polymerase theta 2 2
MIRT633992 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635211 ZNF286A zinc finger protein 286A 2 4
MIRT635249 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635261 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT635283 GK5 glycerol kinase 5 (putative) 2 2
MIRT635663 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT636251 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT636564 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT636814 TBC1D24 TBC1 domain family member 24 2 2
MIRT637358 ZNF460 zinc finger protein 460 2 2
MIRT637473 DEFB105B defensin beta 105B 2 4
MIRT637505 DEFB105A defensin beta 105A 2 4
MIRT637861 SC5D sterol-C5-desaturase 2 2
MIRT638080 ZNF652 zinc finger protein 652 2 2
MIRT638096 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT638174 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT638201 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT638278 SH2B3 SH2B adaptor protein 3 2 2
MIRT638714 FUT11 fucosyltransferase 11 2 2
MIRT638852 CLMP CXADR like membrane protein 2 2
MIRT639815 TMED8 transmembrane p24 trafficking protein family member 8 2 2
MIRT640879 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT640937 FAM129A family with sequence similarity 129 member A 2 2
MIRT640971 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT641642 GNAZ G protein subunit alpha z 2 2
MIRT641931 SLC25A16 solute carrier family 25 member 16 2 2
MIRT642136 CRY2 cryptochrome circadian clock 2 2 2
MIRT643199 JAK3 Janus kinase 3 2 2
MIRT643256 ZNF566 zinc finger protein 566 2 2
MIRT643378 TRIM16L tripartite motif containing 16 like 2 2
MIRT643683 AMER3 APC membrane recruitment protein 3 2 2
MIRT643728 MCMDC2 minichromosome maintenance domain containing 2 2 2
MIRT643949 CCDC141 coiled-coil domain containing 141 2 2
MIRT644915 SERF1B small EDRK-rich factor 1B 2 2
MIRT645163 NOL9 nucleolar protein 9 2 2
MIRT645547 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT645550 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT645572 TACR2 tachykinin receptor 2 2 2
MIRT646697 SERF1A small EDRK-rich factor 1A 2 2
MIRT647806 FRMD8 FERM domain containing 8 2 2
MIRT647903 CIRH1A UTP4, small subunit processome component 2 2
MIRT648978 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT649907 SLFN12L schlafen family member 12 like 2 2
MIRT650224 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT651880 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT651935 UBN1 ubinuclein 1 2 2
MIRT652839 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT652994 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT654800 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655591 OTUD7B OTU deubiquitinase 7B 2 2
MIRT658760 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT659358 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT660717 AMER1 APC membrane recruitment protein 1 2 2
MIRT660737 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT661088 TMEM145 transmembrane protein 145 2 2
MIRT661176 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT662005 ZNF445 zinc finger protein 445 2 2
MIRT662178 KIAA1210 KIAA1210 2 2
MIRT662270 OR51E2 olfactory receptor family 51 subfamily E member 2 2 2
MIRT663046 SLC16A4 solute carrier family 16 member 4 2 2
MIRT663476 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT664039 RPL27A ribosomal protein L27a 2 2
MIRT664096 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT664109 FUT1 fucosyltransferase 1 (H blood group) 2 2
MIRT664317 CD209 CD209 molecule 2 2
MIRT664455 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT664595 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 4
MIRT664694 DBF4 DBF4 zinc finger 2 2
MIRT665162 SF3A1 splicing factor 3a subunit 1 2 2
MIRT665214 RBM22 RNA binding motif protein 22 2 2
MIRT665254 ZNF286B zinc finger protein 286B 2 2
MIRT665268 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT665606 TTC39A tetratricopeptide repeat domain 39A 2 2
MIRT665830 TIMELESS timeless circadian clock 2 2
MIRT666201 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT666546 RNF115 ring finger protein 115 2 2
MIRT666602 REEP3 receptor accessory protein 3 2 2
MIRT666862 POU2F3 POU class 2 homeobox 3 2 4
MIRT666886 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT667158 NRXN3 neurexin 3 2 2
MIRT667252 NEK9 NIMA related kinase 9 2 2
MIRT667419 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT667434 METTL8 methyltransferase like 8 2 2
MIRT668023 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT668062 GPR75 G protein-coupled receptor 75 2 2
MIRT668070 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT668607 EHD4 EH domain containing 4 2 4
MIRT668694 DNAL1 dynein axonemal light chain 1 2 2
MIRT668782 DAAM1 dishevelled associated activator of morphogenesis 1 2 2
MIRT669037 CHEK1 checkpoint kinase 1 2 2
MIRT669044 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT669156 CCNG1 cyclin G1 2 2
MIRT670090 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT670206 SLC24A4 solute carrier family 24 member 4 2 2
MIRT672488 FUS FUS RNA binding protein 2 2
MIRT673830 SLC11A2 solute carrier family 11 member 2 2 2
MIRT675481 VEGFC vascular endothelial growth factor C 2 2
MIRT675634 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT677913 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678420 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678626 OLFML2A olfactomedin like 2A 2 2
MIRT678791 NUPL2 nucleoporin like 2 2 2
MIRT679561 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT680743 CA5B carbonic anhydrase 5B 2 2
MIRT682481 LIX1L limb and CNS expressed 1 like 2 4
MIRT682701 PSMD9 proteasome 26S subunit, non-ATPase 9 2 2
MIRT682759 MDM2 MDM2 proto-oncogene 2 2
MIRT682811 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682847 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT682896 XIAP X-linked inhibitor of apoptosis 2 2
MIRT682916 FAM73A mitoguardin 1 2 2
MIRT682935 ZNF292 zinc finger protein 292 2 2
MIRT682953 RPL12 ribosomal protein L12 2 2
MIRT682972 NF2 neurofibromin 2 2 2
MIRT683033 SUSD5 sushi domain containing 5 2 2
MIRT683081 A1BG alpha-1-B glycoprotein 2 2
MIRT683105 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT686640 TMEM184C transmembrane protein 184C 2 2
MIRT687444 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688401 EMC8 ER membrane protein complex subunit 8 2 2
MIRT688886 C3orf70 chromosome 3 open reading frame 70 2 2
MIRT689148 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 2 2
MIRT689234 RPS19 ribosomal protein S19 2 2
MIRT689306 C5AR2 complement component 5a receptor 2 2 2
MIRT689364 ZNF101 zinc finger protein 101 2 2
MIRT689498 SCARF1 scavenger receptor class F member 1 2 2
MIRT689655 RBM23 RNA binding motif protein 23 2 2
MIRT689897 SOD2 superoxide dismutase 2 2 2
MIRT690150 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT690601 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690805 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT690946 GLG1 golgi glycoprotein 1 2 2
MIRT691388 ATP13A4 ATPase 13A4 2 2
MIRT691408 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT692175 LRRC3C leucine rich repeat containing 3C 2 2
MIRT692235 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693283 GINM1 glycoprotein integral membrane 1 2 2
MIRT693439 TPGS1 tubulin polyglutamylase complex subunit 1 2 2
MIRT693460 HIST1H2AG histone cluster 1 H2A family member g 2 2
MIRT693768 ZNF383 zinc finger protein 383 2 2
MIRT694018 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694236 ZNF749 zinc finger protein 749 2 2
MIRT694321 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694347 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT694430 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT695763 WDR35 WD repeat domain 35 2 2
MIRT696167 TIPIN TIMELESS interacting protein 2 2
MIRT696417 DOCK7 dedicator of cytokinesis 7 2 2
MIRT696543 C3 complement C3 2 2
MIRT696998 CCDC80 coiled-coil domain containing 80 2 2
MIRT697232 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697806 UBXN2A UBX domain protein 2A 2 2
MIRT697944 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT698161 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT698778 STK4 serine/threonine kinase 4 2 2
MIRT700259 RBM12B RNA binding motif protein 12B 2 2
MIRT700970 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT701251 NUP35 nucleoporin 35 2 2
MIRT701607 MYPN myopalladin 2 2
MIRT702457 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702613 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT702691 IRGQ immunity related GTPase Q 2 2
MIRT702934 HMX3 H6 family homeobox 3 2 2
MIRT702991 HERPUD2 HERPUD family member 2 2 2
MIRT703148 GPR137C G protein-coupled receptor 137C 2 2
MIRT703980 EMC1 ER membrane protein complex subunit 1 2 2
MIRT704569 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT705065 C4orf32 family with sequence similarity 241 member A 2 2
MIRT705447 ATL2 atlastin GTPase 2 2 2
MIRT705856 AFF3 AF4/FMR2 family member 3 2 2
MIRT705886 ADIPOR2 adiponectin receptor 2 2 2
MIRT714370 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT715784 PHF12 PHD finger protein 12 2 2
MIRT715864 KIAA0101 PCNA clamp associated factor 2 2
MIRT715947 NUP93 nucleoporin 93 2 2
MIRT716132 THOC5 THO complex 5 2 2
MIRT717084 EBF4 early B-cell factor 4 2 2
MIRT725424 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT736091 GREM1 gremlin 1, DAN family BMP antagonist 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4793 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4793-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4793-3p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4793-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

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