pre-miRNA Information
pre-miRNA hsa-mir-1303   
Genomic Coordinates chr5: 154685776 - 154685861
Synonyms MIRN1303, hsa-mir-1303, MIR1303
Description Homo sapiens miR-1303 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-1303
Sequence 52| UUUAGAGACGGGGUCUUGCUCU |73
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 5 + 154685830 23291724, 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs370437195 6 dbSNP
rs1195001383 7 dbSNP
rs546614687 8 dbSNP
rs762579883 9 dbSNP
rs766041486 10 dbSNP
rs751079975 12 dbSNP
rs888516744 13 dbSNP
rs566454487 14 dbSNP
rs766973220 15 dbSNP
rs1474274822 17 dbSNP
rs753222192 18 dbSNP
rs1230907999 19 dbSNP
rs756552638 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol GNE   
Synonyms DMRV, GLCNE, IBM2, NM, Uae1
Description glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
Transcript NM_001128227   
Other Transcripts NM_001190383 , NM_001190384 , NM_001190388 , NM_005476   
Expression
Putative miRNA Targets on GNE
3'UTR of GNE
(miRNA target sites are highlighted)
>GNE|NM_001128227|3'UTR
   1 ACCTCCAGGAACAGACATGGACCTTCTCTCCAGAGCTCCTGAGTGGAATCAAGTTCTTGTCTTTAGGATGACCGTTTCTT
  81 AACAATCAAATCTGGTATTGAACTGCAGGTGACTTTGGCAGAGAAATGTTTTCACTTTTGGTCTCCTCTTCCAGAGTCAC
 161 CTTTCCCCACTCCTATTTTTGTAGATGCTATTCTTTCTGATGTCTTCTTACTAGGGGTCATTTTAGCTCAAACCCTGTAA
 241 GTTACAGTCACAATTTTCTGTGCCAAAGCAGCTACAATAATAGAGAGGAAGCCTTCTTAGAACTCTGCTTACTAATGTAT
 321 TAATACCACTGAGACCTTCAGGCCTTGCCTGGGATATCACTTCATCCTGAAGTTTGCATTAATAATCCTTCCAGGCCGGG
 401 CACAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCGCC
 481 CTGGCTAACATGGTGAAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGTGTGGTGGCGGGTCCC
 561 AGCTACTCGGGAGGCTGAGGCAGGAGAATGGCATGAACCAGGGAGGCGGAGCTGGCAGTGAACTGAGACCGCACCACTGC
 641 ACTCCAGCCTGGGTGACAGAGCAAGACTCCATCTCAAAAATAATAATAATAAATAATAATAATAATAATAATAATAATAA
 721 TAATCCTTCCAGCTGGGCGCAGTGGCTCACGCCTGTAATCCCAACATTTTGGGAGGCCGAGATGGGCGGATCACCTGAGG
 801 TCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAATACAAAAATTAGCCGGGCGTGGTGGC
 881 ATGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCC
 961 GAGATCATGCCACTGCACTCCACCCTGGGTGACAGAGCGAGACTCCGTCTACACACACACACACACACACACACACATCC
1041 TTCCTCCTCTAACCCCAAACTAAGATCACAGAAGGTGATCCAGTCAGAGAACAGAGGGAAATCTTACCAGGAAGGGCTTA
1121 AGTACACTTTTTTTTAAAACAGCTTTATTGTTTTTAAAGCCTACAATTTGATAAGCCTTGACATATGTATACCTGTGAAA
1201 GCATCACCACAATCAAGACACTGGACATATCTATCACTCCCCCATCTCAGATATCCCCCCTAATCCTGGATACCATTTGT
1281 TGAAAGATGTTATTACTCTAGCTGAACTTACAAGAGACTTTAGACCAGGGATCTAAATTACAGTGGCCTTAGTGACCTTG
1361 TCCTTATCTTCTTAGGACAGCTGAGAAGCCACTGGGACTTAGAGCCTTTAAAAGGAGATTAACTGTCCCAAAAGGATCTT
1441 TGCTACTGACCAGCAGACACTTCTTCCTTCAGTAGCCTTTCATACTGTGTTGAGTAACACCCTAGGGTGTCCATTAAAGT
1521 TTTGAGTTTTACCTAGAGCCCAGAGCCATGAATCAGGATTCTGTCTACATGATTCGTGTTTTCATTGGTGTCAAAATACA
1601 AAAGCCAAAGTTCTGGCTATGAATTGTTAACTTGGAAGAAATACTAACTGCCACCACTTATTAAGTGCCTACTGTGTGCC
1681 AGGCTCTGAACTAGGTGCTTCATATACATTATCCTAAATTATCTCAACATATGAGGTAGGTGTTTTAATTTTTATTTTAT
1761 AGAACTTGGTGTGTTTGACTGTTAAGCTATGGGGCTAGAGAGAGGGTTTGATCCCAGGTCCCTCTGTGCTTTTGCTGCTG
1841 AGCCACACAACCTCTCATTTCAAAAACACTTTCAAAATGCTAACATATTCTAATTCACTCTAGGCCACCAAAAACTTTAA
1921 TACTAATATCTGATTTGTAAATGACTTAATGTATCCTTGACCCTATCAGCTGAATTTAATGAAATATTCCTCTCTGCTGT
2001 GAAATTTTACCAGTATAGTATTTGGTCTAGTGACAGGTGTTCTATTTTTTTGAGACGGGTCTCACTCTGTCACCCAGGCT
2081 GGAGTGCAGTGGCTCAATGCAACCTCTGCCCCCCAAGTTCAAGTGATTCTCCTGCCTCAGCCTCTTGAGTAGCTGGGATT
2161 ACAGGCACATGCACCACGCCCGGCTGATTTTTTTTTGTATTTTTAGTAGACAGGGTTTCACCATGTTGGCCAGGCTGGTC
2241 TTGAACTCCTGACCTCAGGTGATCCGCCCGCCTCTGCCTCCCAAAGTGCTGGGATTACAGGTGTAAGCCATCACACCTGG
2321 CCCTAGTGACAGGTTTTTATGGGTACTTTTAGATGATCTAAGAAATCATGTGCATATATCTTTCAGATTTCTATTTTGGG
2401 AAAATGAAGGTTTCTACAACATATTGTTTCAGTGTTCAAATAAACTGAAGGACTCAACATTACATTTGAACTATATCCTT
2481 CCTAGTGGGTTAGTGTGAAAAAGAGTTTGGCTGATTCCTAAAACTCTGCCAGCCCTGCAGTAATCTCCAGGGCCTGGTTA
2561 TTGTTCAGACATTCCATGGTGATTCCTGGGAAGGAAGCTTGGCTGCTCAGTTTCTGAGTCTGGGGTGAGATAATGTTCTG
2641 GGAAGGGACATCTGTTCTTTGGTGTAATCTCTCATGGTGAAATCTGCTCTGTACATCAGACAATTGCATTGCTACCAAGT
2721 TTCATACCAAATATTTGAAAGGATGGTATTGAATCTAAAACCAAATATTAGTTTTTATTAAACTCATGGGAAGGCTAATA
2801 TATTCCAACGTAAATTATTACATATGGTTAAGTAATTGCATGTTAATTTATTTTAATGTAAATATTTTTGTTACTGTTCT
2881 GAGCCAAATTCTAAAGAAAAAATAAATACATTTCCTTGTTGAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucUCGUUCUGGGGCAGAGAUuu 5'
            :|::| ||||||||||||  
Target 5' atGGTGAAACCCCGTCTCTAct 3'
500 - 521 160.00 -21.80
2
miRNA  3' ucUCGUUCUGGGGCAGAGAUUu 5'
            ||||||||:|| |||| || 
Target 5' agAGCAAGACTCCATCTCAAAa 3'
658 - 679 156.00 -26.90
3
miRNA  3' ucUCGUUCUGGGGCAGAGAUuu 5'
            :|::| ||||| ||||||  
Target 5' atGGTGAAACCCCATCTCTAct 3'
829 - 850 152.00 -15.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
366842 30 ClinVar
366841 74 ClinVar
366840 208 ClinVar
912434 252 ClinVar
366839 283 ClinVar
912433 292 ClinVar
366838 446 ClinVar
915135 512 ClinVar
366837 513 ClinVar
366836 554 ClinVar
913886 573 ClinVar
913885 582 ClinVar
366835 583 ClinVar
366834 630 ClinVar
913506 663 ClinVar
913505 690 ClinVar
366833 691 ClinVar
366832 693 ClinVar
366831 694 ClinVar
366830 703 ClinVar
366826 725 ClinVar
366827 725 ClinVar
366828 725 ClinVar
366829 725 ClinVar
912378 872 ClinVar
366825 936 ClinVar
366824 937 ClinVar
976600 988 ClinVar
976599 1007 ClinVar
366823 1021 ClinVar
366818 1038 ClinVar
366819 1038 ClinVar
366820 1038 ClinVar
366821 1038 ClinVar
366822 1038 ClinVar
913841 1038 ClinVar
366817 1054 ClinVar
913840 1068 ClinVar
913839 1127 ClinVar
366816 1204 ClinVar
366815 1575 ClinVar
366814 1635 ClinVar
913456 1660 ClinVar
366813 1694 ClinVar
366812 1728 ClinVar
366811 1781 ClinVar
366810 1826 ClinVar
912328 1854 ClinVar
366809 2056 ClinVar
366808 2156 ClinVar
915058 2185 ClinVar
366807 2197 ClinVar
366806 2211 ClinVar
914530 2245 ClinVar
366805 2269 ClinVar
366804 2391 ClinVar
366803 2410 ClinVar
366802 2415 ClinVar
913416 2431 ClinVar
366801 2448 ClinVar
913053 2453 ClinVar
913052 2537 ClinVar
913051 2550 ClinVar
366800 2576 ClinVar
366799 2679 ClinVar
915006 2709 ClinVar
366798 2766 ClinVar
366797 2789 ClinVar
366796 2847 ClinVar
366795 2877 ClinVar
366794 2907 ClinVar
COSN31525041 61 COSMIC
COSN31605666 92 COSMIC
COSN30679395 96 COSMIC
COSN30569932 102 COSMIC
COSN31563972 108 COSMIC
COSN20076733 111 COSMIC
COSN31603757 123 COSMIC
COSN9711470 123 COSMIC
COSN20106189 276 COSMIC
COSN6520466 655 COSMIC
COSN29004618 691 COSMIC
COSN9711469 846 COSMIC
COSN32064260 936 COSMIC
COSN29012699 1010 COSMIC
COSN15331044 1021 COSMIC
COSN18161795 1021 COSMIC
COSN27500766 1021 COSMIC
COSN30551853 1128 COSMIC
COSN30756050 1261 COSMIC
COSN20262905 1368 COSMIC
COSN14933350 1826 COSMIC
COSN25736516 2063 COSMIC
COSN2323026 2669 COSMIC
COSN7052395 2914 COSMIC
COSN7052394 2915 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1317745418 2 dbSNP
rs1187267657 16 dbSNP
rs1415974947 17 dbSNP
rs911596005 18 dbSNP
rs986281914 26 dbSNP
rs1013013867 28 dbSNP
rs953136700 29 dbSNP
rs540975887 30 dbSNP
rs759035396 35 dbSNP
rs1475117723 36 dbSNP
rs746467638 41 dbSNP
rs371928653 45 dbSNP
rs1249471065 46 dbSNP
rs1296446191 55 dbSNP
rs1229460437 64 dbSNP
rs920731178 72 dbSNP
rs1292374363 73 dbSNP
rs16933089 74 dbSNP
rs749818036 82 dbSNP
rs561159022 84 dbSNP
rs1036976309 87 dbSNP
rs1201820257 90 dbSNP
rs778076954 97 dbSNP
rs890802165 106 dbSNP
rs138660882 108 dbSNP
rs1003826980 110 dbSNP
rs1255803795 118 dbSNP
rs971126347 141 dbSNP
rs1049342351 145 dbSNP
rs1396175684 149 dbSNP
rs1423172435 149 dbSNP
rs1299121269 156 dbSNP
rs1178251116 167 dbSNP
rs763511714 169 dbSNP
rs1400105909 173 dbSNP
rs1360829791 185 dbSNP
rs377650342 188 dbSNP
rs932315775 192 dbSNP
rs1463925843 194 dbSNP
rs1367238022 199 dbSNP
rs1312073405 205 dbSNP
rs1163572294 207 dbSNP
rs771508931 208 dbSNP
rs914355622 211 dbSNP
rs868107076 212 dbSNP
rs1298504870 214 dbSNP
rs1360820980 223 dbSNP
rs1212309700 227 dbSNP
rs185123552 234 dbSNP
rs550399627 241 dbSNP
rs1054260475 244 dbSNP
rs1000048314 245 dbSNP
rs1278791611 247 dbSNP
rs865777414 247 dbSNP
rs1489500758 251 dbSNP
rs745365886 252 dbSNP
rs1042019823 253 dbSNP
rs1250901270 256 dbSNP
rs1484976342 258 dbSNP
rs1193020196 269 dbSNP
rs192714222 273 dbSNP
rs140089561 283 dbSNP
rs1172978029 285 dbSNP
rs1264855505 287 dbSNP
rs1213120676 288 dbSNP
rs1335595008 292 dbSNP
rs1421348925 295 dbSNP
rs1298521776 296 dbSNP
rs1344244024 297 dbSNP
rs1428170580 305 dbSNP
rs1295231086 306 dbSNP
rs972022611 307 dbSNP
rs1439485329 316 dbSNP
rs915917811 319 dbSNP
rs1356393733 324 dbSNP
rs911508851 338 dbSNP
rs991527490 343 dbSNP
rs539206213 353 dbSNP
rs1027771636 354 dbSNP
rs1247476711 369 dbSNP
rs1488236010 374 dbSNP
rs1050106096 375 dbSNP
rs1251077308 382 dbSNP
rs1308067026 387 dbSNP
rs1393564173 388 dbSNP
rs1159060996 395 dbSNP
rs71531220 397 dbSNP
rs576667117 398 dbSNP
rs931707218 402 dbSNP
rs920364726 413 dbSNP
rs1460474831 427 dbSNP
rs71531219 430 dbSNP
rs1462460832 432 dbSNP
rs1395973888 441 dbSNP
rs752799503 442 dbSNP
rs748366059 445 dbSNP
rs886063924 446 dbSNP
rs553646947 447 dbSNP
rs71508019 447 dbSNP
rs1230382376 450 dbSNP
rs533869945 451 dbSNP
rs188252022 457 dbSNP
rs1211906255 458 dbSNP
rs1260033248 466 dbSNP
rs1459054326 467 dbSNP
rs547849239 471 dbSNP
rs767888075 472 dbSNP
rs1182500936 476 dbSNP
rs982767142 477 dbSNP
rs971006443 478 dbSNP
rs1414068486 486 dbSNP
rs1460553966 488 dbSNP
rs1024022490 496 dbSNP
rs1049622638 499 dbSNP
rs1401903556 504 dbSNP
rs1252262234 510 dbSNP
rs778187039 510 dbSNP
rs537851886 512 dbSNP
rs886063923 513 dbSNP
rs892785293 513 dbSNP
rs1054151272 529 dbSNP
rs934377604 536 dbSNP
rs568932120 543 dbSNP
rs755277976 554 dbSNP
rs1469782828 555 dbSNP
rs1272280365 559 dbSNP
rs1435936221 563 dbSNP
rs1212009881 568 dbSNP
rs924811378 569 dbSNP
rs1032415165 573 dbSNP
rs999645453 582 dbSNP
rs182741472 583 dbSNP
rs532752296 584 dbSNP
rs1350221971 587 dbSNP
rs991729257 593 dbSNP
rs1417998124 594 dbSNP
rs1020119404 600 dbSNP
rs1335302026 607 dbSNP
rs1375277591 608 dbSNP
rs1009198133 621 dbSNP
rs1300358610 629 dbSNP
rs150102934 630 dbSNP
rs1303163160 631 dbSNP
rs1268449024 634 dbSNP
rs1050493275 636 dbSNP
rs962396883 653 dbSNP
rs931633671 661 dbSNP
rs1373838375 663 dbSNP
rs898862167 669 dbSNP
rs1037403507 670 dbSNP
rs1399675154 672 dbSNP
rs1447149940 687 dbSNP
rs10972792 690 dbSNP
rs1478713359 690 dbSNP
rs10972791 691 dbSNP
rs60468720 692 dbSNP
rs1028218879 693 dbSNP
rs1160769647 693 dbSNP
rs1346976952 693 dbSNP
rs374896148 693 dbSNP
rs886063922 693 dbSNP
rs1159979857 694 dbSNP
rs769589340 694 dbSNP
rs867926432 694 dbSNP
rs1350984523 696 dbSNP
rs201131813 696 dbSNP
rs60863951 696 dbSNP
rs761205952 696 dbSNP
rs1259200639 697 dbSNP
rs1394198952 697 dbSNP
rs1452887891 697 dbSNP
rs1193705630 699 dbSNP
rs1491150433 700 dbSNP
rs1174044071 701 dbSNP
rs756749461 702 dbSNP
rs776672084 702 dbSNP
rs886063921 703 dbSNP
rs996694689 703 dbSNP
rs892817815 708 dbSNP
rs1246183469 709 dbSNP
rs1462037184 709 dbSNP
rs1325238461 711 dbSNP
rs1191094259 712 dbSNP
rs547299520 716 dbSNP
rs1446546900 717 dbSNP
rs1438574247 718 dbSNP
rs1311327338 722 dbSNP
rs1336177487 724 dbSNP
rs113316798 725 dbSNP
rs1238043029 725 dbSNP
rs1258656446 725 dbSNP
rs371217125 725 dbSNP
rs886063920 725 dbSNP
rs1262558248 726 dbSNP
rs1207072643 733 dbSNP
rs1343158301 734 dbSNP
rs1467227117 736 dbSNP
rs940482097 738 dbSNP
rs866140622 739 dbSNP
rs1390607191 743 dbSNP
rs1304521073 748 dbSNP
rs1235562410 764 dbSNP
rs1350664985 767 dbSNP
rs982309349 777 dbSNP
rs563228485 778 dbSNP
rs916856675 779 dbSNP
rs1292274578 782 dbSNP
rs1332109004 785 dbSNP
rs1199981224 787 dbSNP
rs541943473 788 dbSNP
rs998618238 790 dbSNP
rs1194461256 795 dbSNP
rs1258654495 799 dbSNP
rs1326461070 810 dbSNP
rs902971531 812 dbSNP
rs1187560592 816 dbSNP
rs991092707 828 dbSNP
rs958016864 831 dbSNP
rs530293478 842 dbSNP
rs1032383812 845 dbSNP
rs751782293 854 dbSNP
rs978133299 856 dbSNP
rs1319740532 859 dbSNP
rs1461373832 864 dbSNP
rs966828179 868 dbSNP
rs1020509831 869 dbSNP
rs950294353 870 dbSNP
rs1311966410 871 dbSNP
rs1008750814 872 dbSNP
rs1313254275 873 dbSNP
rs1436415002 875 dbSNP
rs890311633 879 dbSNP
rs1388221671 885 dbSNP
rs894630775 886 dbSNP
rs1167300541 889 dbSNP
rs1307457784 889 dbSNP
rs1475715139 892 dbSNP
rs1225928553 899 dbSNP
rs1056079211 900 dbSNP
rs561645779 904 dbSNP
rs1195428058 905 dbSNP
rs1210610244 908 dbSNP
rs1484813337 908 dbSNP
rs1257152105 925 dbSNP
rs1212017965 926 dbSNP
rs1486881924 929 dbSNP
rs1271361372 930 dbSNP
rs56974443 936 dbSNP
rs191229205 937 dbSNP
rs1168314115 943 dbSNP
rs1271361768 943 dbSNP
rs565028656 944 dbSNP
rs1354411812 947 dbSNP
rs1373264034 954 dbSNP
rs1037330425 958 dbSNP
rs1289054275 959 dbSNP
rs940410060 960 dbSNP
rs1416357134 961 dbSNP
rs886201984 965 dbSNP
rs1046975840 967 dbSNP
rs1241109557 969 dbSNP
rs1213074057 970 dbSNP
rs1465810144 971 dbSNP
rs1268712821 972 dbSNP
rs1232592801 974 dbSNP
rs1332500013 978 dbSNP
rs1314577959 980 dbSNP
rs770218503 981 dbSNP
rs949560415 983 dbSNP
rs987554194 987 dbSNP
rs916769105 988 dbSNP
rs545144386 995 dbSNP
rs1433006617 996 dbSNP
rs991068031 998 dbSNP
rs1321883657 999 dbSNP
rs1192928269 1000 dbSNP
rs776966046 1001 dbSNP
rs111448141 1003 dbSNP
rs769112851 1004 dbSNP
rs939636834 1006 dbSNP
rs1192808563 1007 dbSNP
rs557592104 1007 dbSNP
rs1220690648 1009 dbSNP
rs866325899 1010 dbSNP
rs10527967 1011 dbSNP
rs771666978 1011 dbSNP
rs1418360913 1012 dbSNP
rs1159455282 1014 dbSNP
rs1184350204 1015 dbSNP
rs748579564 1017 dbSNP
rs925240808 1018 dbSNP
rs1248106608 1019 dbSNP
rs978102265 1019 dbSNP
rs10435799 1021 dbSNP
rs1398551984 1021 dbSNP
rs1327258611 1022 dbSNP
rs61013823 1022 dbSNP
rs1019680295 1023 dbSNP
rs1217967463 1023 dbSNP
rs796188514 1025 dbSNP
rs987321453 1025 dbSNP
rs780274206 1026 dbSNP
rs1467099121 1027 dbSNP
rs954559049 1027 dbSNP
rs1392474863 1028 dbSNP
rs779510333 1028 dbSNP
rs1028084399 1029 dbSNP
rs1222031685 1030 dbSNP
rs755257100 1031 dbSNP
rs1028819254 1032 dbSNP
rs754277292 1033 dbSNP
rs1226451904 1034 dbSNP
rs996008727 1034 dbSNP
rs780363114 1035 dbSNP
rs963271739 1036 dbSNP
rs1273848185 1037 dbSNP
rs756407874 1037 dbSNP
rs1213043495 1038 dbSNP
rs1471076345 1038 dbSNP
rs1491095699 1038 dbSNP
rs372445601 1038 dbSNP
rs886063919 1038 dbSNP
rs975309543 1038 dbSNP
rs1491225095 1039 dbSNP
rs750742814 1039 dbSNP
rs957245848 1041 dbSNP
rs1440205436 1043 dbSNP
rs1366154806 1046 dbSNP
rs1295734784 1047 dbSNP
rs1458751571 1050 dbSNP
rs1354303634 1051 dbSNP
rs1166402496 1053 dbSNP
rs7048468 1054 dbSNP
rs187875852 1068 dbSNP
rs77293300 1069 dbSNP
rs767483744 1075 dbSNP
rs1269390362 1079 dbSNP
rs779204183 1080 dbSNP
rs1480224404 1081 dbSNP
rs1249369795 1085 dbSNP
rs1203343176 1094 dbSNP
rs1375092930 1096 dbSNP
rs1344612541 1098 dbSNP
rs1275573116 1104 dbSNP
rs1233666039 1106 dbSNP
rs1310461498 1107 dbSNP
rs1320495423 1111 dbSNP
rs1304132249 1113 dbSNP
rs534015800 1114 dbSNP
rs1373110988 1116 dbSNP
rs1306584970 1120 dbSNP
rs1412017583 1122 dbSNP
rs1370787185 1125 dbSNP
rs1046134136 1126 dbSNP
rs1464155452 1130 dbSNP
rs753879971 1135 dbSNP
rs1280735825 1136 dbSNP
rs762003038 1136 dbSNP
rs1013792531 1137 dbSNP
rs895277957 1140 dbSNP
rs1346844183 1156 dbSNP
rs1198424583 1158 dbSNP
rs1176753753 1161 dbSNP
rs1191764853 1167 dbSNP
rs1418407149 1169 dbSNP
rs1246739772 1170 dbSNP
rs1198187026 1171 dbSNP
rs1484040351 1186 dbSNP
rs1194684717 1194 dbSNP
rs183365416 1204 dbSNP
rs936879871 1205 dbSNP
rs1055930976 1207 dbSNP
rs1393766654 1212 dbSNP
rs930793349 1213 dbSNP
rs1165763296 1227 dbSNP
rs1463149224 1232 dbSNP
rs925546452 1233 dbSNP
rs765093592 1237 dbSNP
rs899457195 1237 dbSNP
rs1443066989 1250 dbSNP
rs1036599801 1251 dbSNP
rs1042686323 1254 dbSNP
rs1230789442 1256 dbSNP
rs1235069181 1259 dbSNP
rs1192258015 1261 dbSNP
rs945386370 1267 dbSNP
rs940716998 1270 dbSNP
rs911869307 1286 dbSNP
rs1252904017 1287 dbSNP
rs1052300153 1293 dbSNP
rs932029485 1297 dbSNP
rs1273197079 1299 dbSNP
rs1364624558 1301 dbSNP
rs879159216 1305 dbSNP
rs1157183030 1311 dbSNP
rs1469785129 1311 dbSNP
rs781691497 1312 dbSNP
rs1314755591 1313 dbSNP
rs1283180126 1318 dbSNP
rs1462017853 1322 dbSNP
rs1326576513 1327 dbSNP
rs912589946 1352 dbSNP
rs921104780 1356 dbSNP
rs1330582758 1357 dbSNP
rs1336014592 1365 dbSNP
rs1237923878 1369 dbSNP
rs1286040865 1377 dbSNP
rs1224099742 1378 dbSNP
rs1233355101 1394 dbSNP
rs1375206547 1395 dbSNP
rs1301011180 1401 dbSNP
rs986899401 1402 dbSNP
rs554858853 1407 dbSNP
rs1440002772 1415 dbSNP
rs1371643909 1421 dbSNP
rs1487765016 1423 dbSNP
rs1197964125 1434 dbSNP
rs975250362 1437 dbSNP
rs954271835 1445 dbSNP
rs1180365946 1449 dbSNP
rs1420289800 1458 dbSNP
rs921733510 1460 dbSNP
rs1475580406 1463 dbSNP
rs974560097 1470 dbSNP
rs963240700 1472 dbSNP
rs957198008 1473 dbSNP
rs1397002110 1481 dbSNP
rs925884847 1486 dbSNP
rs1443270219 1487 dbSNP
rs1356896468 1494 dbSNP
rs1016117040 1498 dbSNP
rs967460088 1499 dbSNP
rs1005236903 1500 dbSNP
rs950411694 1501 dbSNP
rs1014013630 1504 dbSNP
rs1023947683 1504 dbSNP
rs1025064093 1505 dbSNP
rs1013304000 1507 dbSNP
rs1339212848 1510 dbSNP
rs1034100738 1522 dbSNP
rs995029905 1532 dbSNP
rs1486092215 1534 dbSNP
rs537436586 1538 dbSNP
rs568921977 1540 dbSNP
rs1454220504 1545 dbSNP
rs1254216028 1552 dbSNP
rs1430357437 1557 dbSNP
rs1195309604 1559 dbSNP
rs894910208 1561 dbSNP
rs1254247968 1563 dbSNP
rs1194939983 1569 dbSNP
rs761447556 1575 dbSNP
rs1241049854 1576 dbSNP
rs552282953 1585 dbSNP
rs1001017679 1594 dbSNP
rs538774065 1601 dbSNP
rs1005111949 1604 dbSNP
rs1277840734 1610 dbSNP
rs751849626 1620 dbSNP
rs780300628 1622 dbSNP
rs1383409516 1625 dbSNP
rs1233377400 1634 dbSNP
rs190727651 1635 dbSNP
rs867558953 1639 dbSNP
rs1226675923 1642 dbSNP
rs1282861397 1648 dbSNP
rs1349009826 1650 dbSNP
rs1305595646 1655 dbSNP
rs185870650 1660 dbSNP
rs750509496 1665 dbSNP
rs1053779509 1668 dbSNP
rs1448756083 1673 dbSNP
rs1186565564 1676 dbSNP
rs530317139 1678 dbSNP
rs567820407 1679 dbSNP
rs1396716722 1686 dbSNP
rs1454542723 1691 dbSNP
rs886063918 1694 dbSNP
rs1357007018 1695 dbSNP
rs1454907836 1697 dbSNP
rs1431674557 1701 dbSNP
rs921366466 1708 dbSNP
rs1388588714 1710 dbSNP
rs1433576811 1712 dbSNP
rs41277097 1728 dbSNP
rs1311433286 1733 dbSNP
rs1434545465 1734 dbSNP
rs1396177994 1744 dbSNP
rs1176034160 1746 dbSNP
rs1372248976 1746 dbSNP
rs1427284390 1749 dbSNP
rs963168796 1751 dbSNP
rs1418098006 1752 dbSNP
rs909083594 1758 dbSNP
rs983349971 1769 dbSNP
rs16933086 1781 dbSNP
rs1267633636 1783 dbSNP
rs1463585423 1788 dbSNP
rs1206813320 1789 dbSNP
rs977758584 1793 dbSNP
rs1024615466 1800 dbSNP
rs1190355673 1821 dbSNP
rs7044157 1826 dbSNP
rs1420459798 1849 dbSNP
rs763907827 1851 dbSNP
rs959053325 1852 dbSNP
rs1410647513 1855 dbSNP
rs1455174475 1863 dbSNP
rs1328592355 1871 dbSNP
rs1255031847 1872 dbSNP
rs1395767341 1873 dbSNP
rs1209861398 1896 dbSNP
rs1292097274 1911 dbSNP
rs1033416837 1917 dbSNP
rs1375947082 1925 dbSNP
rs1224595211 1926 dbSNP
rs544309845 1930 dbSNP
rs1327249049 1936 dbSNP
rs760418417 1937 dbSNP
rs1235142567 1950 dbSNP
rs1000654782 1952 dbSNP
rs1274991526 1956 dbSNP
rs916906578 1966 dbSNP
rs1282236110 1967 dbSNP
rs1220595931 1969 dbSNP
rs992534852 1972 dbSNP
rs528538484 1974 dbSNP
rs958344546 1978 dbSNP
rs559424901 1979 dbSNP
rs1177484318 1981 dbSNP
rs1306857620 1999 dbSNP
rs775057401 2009 dbSNP
rs1471324693 2013 dbSNP
rs1034130570 2015 dbSNP
rs771727931 2018 dbSNP
rs904022189 2029 dbSNP
rs759037804 2030 dbSNP
rs1419233314 2035 dbSNP
rs1021541702 2037 dbSNP
rs963900104 2044 dbSNP
rs1015055312 2052 dbSNP
rs369756329 2052 dbSNP
rs183641957 2056 dbSNP
rs891383898 2057 dbSNP
rs1414428562 2058 dbSNP
rs1051079686 2067 dbSNP
rs1416726122 2069 dbSNP
rs1293945345 2081 dbSNP
rs1355688879 2083 dbSNP
rs1331290258 2095 dbSNP
rs1227720240 2102 dbSNP
rs1287625439 2103 dbSNP
rs1376395547 2112 dbSNP
rs1309108258 2113 dbSNP
rs1304976336 2114 dbSNP
rs932635594 2141 dbSNP
rs1273479444 2142 dbSNP
rs1051964244 2148 dbSNP
rs2741725 2156 dbSNP
rs1472172609 2162 dbSNP
rs900496950 2169 dbSNP
rs1422192996 2172 dbSNP
rs1053810947 2173 dbSNP
rs770496005 2177 dbSNP
rs1436863739 2178 dbSNP
rs1313686970 2181 dbSNP
rs941451529 2182 dbSNP
rs936733455 2183 dbSNP
rs1282356247 2184 dbSNP
rs1363912664 2189 dbSNP
rs1228891613 2193 dbSNP
rs1273598668 2195 dbSNP
rs1380076345 2197 dbSNP
rs199874473 2197 dbSNP
rs1170517420 2199 dbSNP
rs1207346082 2202 dbSNP
rs1244358193 2208 dbSNP
rs1478544623 2209 dbSNP
rs1450595828 2210 dbSNP
rs150978860 2211 dbSNP
rs1388757638 2214 dbSNP
rs983704579 2219 dbSNP
rs929216958 2220 dbSNP
rs1174570569 2222 dbSNP
rs1186726482 2223 dbSNP
rs1475341750 2224 dbSNP
rs1259281860 2228 dbSNP
rs1412845614 2229 dbSNP
rs544525699 2230 dbSNP
rs1320310281 2235 dbSNP
rs917809731 2238 dbSNP
rs1346923838 2239 dbSNP
rs1193929989 2245 dbSNP
rs554741166 2247 dbSNP
rs992120214 2255 dbSNP
rs1362852551 2265 dbSNP
rs959020937 2266 dbSNP
rs575299401 2269 dbSNP
rs979134898 2270 dbSNP
rs967796032 2273 dbSNP
rs1285795818 2276 dbSNP
rs1021092524 2277 dbSNP
rs781743784 2280 dbSNP
rs1246721859 2281 dbSNP
rs1470110390 2298 dbSNP
rs1199955934 2300 dbSNP
rs937005125 2303 dbSNP
rs1477138591 2305 dbSNP
rs769191591 2318 dbSNP
rs1232841903 2327 dbSNP
rs563025182 2335 dbSNP
rs1160478218 2339 dbSNP
rs1412869670 2346 dbSNP
rs747345732 2355 dbSNP
rs780206135 2369 dbSNP
rs997087840 2370 dbSNP
rs899841770 2374 dbSNP
rs1038342476 2376 dbSNP
rs1323927648 2388 dbSNP
rs1043313 2391 dbSNP
rs887210829 2392 dbSNP
rs1230672253 2393 dbSNP
rs746022526 2395 dbSNP
rs886063917 2410 dbSNP
rs143569888 2415 dbSNP
rs1015080418 2423 dbSNP
rs929119736 2429 dbSNP
rs917794045 2431 dbSNP
rs992076446 2446 dbSNP
rs757287887 2448 dbSNP
rs753796419 2451 dbSNP
rs1163596916 2453 dbSNP
rs1184333930 2459 dbSNP
rs1252729987 2463 dbSNP
rs996354765 2466 dbSNP
rs566524232 2470 dbSNP
rs553039028 2473 dbSNP
rs900527971 2474 dbSNP
rs1409710661 2481 dbSNP
rs1032263691 2482 dbSNP
rs1389821912 2484 dbSNP
rs1369899140 2497 dbSNP
rs1384854732 2503 dbSNP
rs1309477803 2504 dbSNP
rs1350660791 2515 dbSNP
rs1001363534 2517 dbSNP
rs902629012 2527 dbSNP
rs1356780695 2530 dbSNP
rs372844666 2531 dbSNP
rs1418330336 2533 dbSNP
rs1042849497 2537 dbSNP
rs945932665 2538 dbSNP
rs536432538 2541 dbSNP
rs1197865778 2542 dbSNP
rs1275650433 2543 dbSNP
rs567895721 2547 dbSNP
rs191345940 2550 dbSNP
rs35512032 2553 dbSNP
rs895611599 2553 dbSNP
rs1178830090 2561 dbSNP
rs1467094610 2563 dbSNP
rs1188241141 2567 dbSNP
rs565481300 2572 dbSNP
rs1251148218 2574 dbSNP
rs531142218 2576 dbSNP
rs1456208661 2585 dbSNP
rs913622175 2586 dbSNP
rs571622281 2599 dbSNP
rs1370819855 2609 dbSNP
rs1428748669 2631 dbSNP
rs987936948 2633 dbSNP
rs1380782123 2640 dbSNP
rs937203191 2645 dbSNP
rs551316053 2647 dbSNP
rs764001643 2650 dbSNP
rs926954748 2652 dbSNP
rs1230114542 2661 dbSNP
rs1298858095 2664 dbSNP
rs973100548 2668 dbSNP
rs528477954 2674 dbSNP
rs955720198 2675 dbSNP
rs566044462 2679 dbSNP
rs1199882744 2686 dbSNP
rs907640201 2689 dbSNP
rs1421941376 2697 dbSNP
rs1190398932 2701 dbSNP
rs1390610132 2709 dbSNP
rs186443315 2711 dbSNP
rs180981419 2712 dbSNP
rs1448627484 2717 dbSNP
rs188365705 2727 dbSNP
rs1369431305 2729 dbSNP
rs1360476671 2737 dbSNP
rs983592041 2744 dbSNP
rs1301709406 2745 dbSNP
rs1399398886 2757 dbSNP
rs1441072228 2765 dbSNP
rs886063916 2766 dbSNP
rs1226558897 2775 dbSNP
rs1303692071 2783 dbSNP
rs140396892 2789 dbSNP
rs1232660160 2793 dbSNP
rs547821852 2794 dbSNP
rs1030432145 2798 dbSNP
rs964276515 2804 dbSNP
rs745546310 2809 dbSNP
rs1248561048 2810 dbSNP
rs544436240 2816 dbSNP
rs773821689 2817 dbSNP
rs1032545285 2822 dbSNP
rs575579722 2823 dbSNP
rs887145967 2824 dbSNP
rs767136207 2834 dbSNP
rs1000899550 2835 dbSNP
rs902500825 2846 dbSNP
rs886063915 2847 dbSNP
rs1452499051 2849 dbSNP
rs1433374886 2853 dbSNP
rs1014065535 2856 dbSNP
rs1193061509 2859 dbSNP
rs759228247 2861 dbSNP
rs895655937 2870 dbSNP
rs1056316347 2872 dbSNP
rs886063914 2877 dbSNP
rs1269598822 2889 dbSNP
rs886063913 2907 dbSNP
rs1206710013 2909 dbSNP
rs1328341055 2909 dbSNP
rs1248296304 2914 dbSNP
rs1001361038 2916 dbSNP
rs1203561637 2919 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084079. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucUCGUUCUGGGGCAGAGAuuu 5'
            :|::| |||||||||||   
Target 5' auGGUGAAACCCCGUCUCU--- 3'
6 - 24
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084079
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_AbnovaAb
Location of target site ENST00000396594.3 | 3UTR | GAAACAUGGUGAAACCCCGUCUCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28544 Breast cancer -0.559 2.3e-3 -0.592 1.2e-3 24 Click to see details
GSE28260 Renal cortex and medulla 0.616 1.2e-2 0.511 3.7e-2 13 Click to see details
GSE42095 Differentiated embryonic stem cells -0.355 4.8e-2 -0.126 2.8e-1 23 Click to see details
GSE32688 Pancreatic cancer 0.27 6.8e-2 0.253 8.1e-2 32 Click to see details
GSE26953 Aortic valvular endothelial cells 0.179 2.0e-1 0.072 3.7e-1 24 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.137 2.6e-1 0.045 4.2e-1 25 Click to see details
GSE38226 Liver fibrosis 0.098 3.4e-1 0.330 7.2e-2 21 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
186 hsa-miR-1303 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT035871 SOAT1 sterol O-acyltransferase 1 1 1
MIRT035872 FHOD3 formin homology 2 domain containing 3 1 1
MIRT035873 RPL7A ribosomal protein L7a 1 1
MIRT035874 NCAPD2 non-SMC condensin I complex subunit D2 1 1
MIRT035875 RPS8 ribosomal protein S8 1 1
MIRT035876 AHNAK AHNAK nucleoprotein 1 1
MIRT035877 ACTB actin beta 1 1
MIRT035878 DEF8 differentially expressed in FDCP 8 homolog 1 1
MIRT035879 MET MET proto-oncogene, receptor tyrosine kinase 1 1
MIRT035880 MED13 mediator complex subunit 13 1 1
MIRT035881 FAT3 FAT atypical cadherin 3 1 1
MIRT035882 HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 1 1
MIRT035883 RPS16 ribosomal protein S16 1 1
MIRT035884 CDK6 cyclin dependent kinase 6 1 1
MIRT035885 GEMIN5 gem nuclear organelle associated protein 5 1 1
MIRT035886 PITRM1 pitrilysin metallopeptidase 1 1 1
MIRT035887 PRRC2A proline rich coiled-coil 2A 1 1
MIRT035888 KIAA0226 RUN and cysteine rich domain containing beclin 1 interacting protein 1 1
MIRT035889 MLLT6 MLLT6, PHD finger containing 1 1
MIRT035890 EIF3I eukaryotic translation initiation factor 3 subunit I 1 1
MIRT035891 FASN fatty acid synthase 1 1
MIRT035892 LEPREL4 prolyl 3-hydroxylase family member 4 (non-enzymatic) 1 1
MIRT035893 HSCB HscB mitochondrial iron-sulfur cluster cochaperone 1 1
MIRT035894 PSME4 proteasome activator subunit 4 1 1
MIRT035895 FRS2 fibroblast growth factor receptor substrate 2 1 1
MIRT035896 ZNF264 zinc finger protein 264 1 1
MIRT035897 HYLS1 HYLS1, centriolar and ciliogenesis associated 1 1
MIRT035898 USP54 ubiquitin specific peptidase 54 1 1
MIRT035899 L1TD1 LINE1 type transposase domain containing 1 1 1
MIRT035900 OR51E2 olfactory receptor family 51 subfamily E member 2 1 1
MIRT053762 CLDN18 claudin 18 3 1
MIRT060730 RPS3 ribosomal protein S3 2 2
MIRT083986 RAB22A RAB22A, member RAS oncogene family 2 2
MIRT098550 TBPL1 TATA-box binding protein like 1 2 6
MIRT134983 TWF1 twinfilin actin binding protein 1 2 4
MIRT136956 FNDC3A fibronectin type III domain containing 3A 2 2
MIRT222065 PURB purine rich element binding protein B 2 2
MIRT239574 UBN2 ubinuclein 2 2 4
MIRT261820 BUB3 BUB3, mitotic checkpoint protein 2 2
MIRT264698 C11ORF57 chromosome 11 open reading frame 57 2 4
MIRT308476 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT377481 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT442304 NEU3 neuraminidase 3 2 2
MIRT446083 SLC30A10 solute carrier family 30 member 10 2 2
MIRT449606 PRPF4 pre-mRNA processing factor 4 2 2
MIRT453767 NUCB1 nucleobindin 1 2 10
MIRT455603 SRSF3 serine and arginine rich splicing factor 3 2 2
MIRT455913 KIF2C kinesin family member 2C 2 2
MIRT460091 ZYG11B zyg-11 family member B, cell cycle regulator 2 4
MIRT460866 UBE2S ubiquitin conjugating enzyme E2 S 2 2
MIRT461339 NUP133 nucleoporin 133 2 2
MIRT463769 YOD1 YOD1 deubiquitinase 2 2
MIRT466368 THAP1 THAP domain containing 1 2 4
MIRT467168 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT468703 SDHD succinate dehydrogenase complex subunit D 2 2
MIRT469122 RNF126 ring finger protein 126 2 2
MIRT472426 NCBP2 nuclear cap binding protein subunit 2 2 4
MIRT479420 CDKN1B cyclin dependent kinase inhibitor 1B 2 8
MIRT484260 FAM177A1 family with sequence similarity 177 member A1 2 2
MIRT485468 IL6ST interleukin 6 signal transducer 2 10
MIRT490237 H2AFZ H2A histone family member Z 2 6
MIRT491002 ATF7IP activating transcription factor 7 interacting protein 2 2
MIRT492127 SUMO2 small ubiquitin-like modifier 2 2 2
MIRT499169 RBPJL recombination signal binding protein for immunoglobulin kappa J region like 2 2
MIRT499825 PCSK9 proprotein convertase subtilisin/kexin type 9 2 8
MIRT501794 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT503441 GINS4 GINS complex subunit 4 2 4
MIRT503688 MAVS mitochondrial antiviral signaling protein 2 5
MIRT506926 IGDCC4 immunoglobulin superfamily DCC subclass member 4 2 6
MIRT511430 HOXA10 homeobox A10 2 6
MIRT512415 LAYN layilin 2 4
MIRT513791 NIPAL3 NIPA like domain containing 3 2 4
MIRT516163 NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1 2 4
MIRT516513 PARK2 parkin RBR E3 ubiquitin protein ligase 2 2
MIRT516915 HINFP histone H4 transcription factor 2 2
MIRT517102 NDUFV3 NADH:ubiquinone oxidoreductase subunit V3 2 2
MIRT517350 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT518019 ABHD15 abhydrolase domain containing 15 2 2
MIRT520945 SRSF10 serine and arginine rich splicing factor 10 2 2
MIRT525250 RNF213 ring finger protein 213 2 2
MIRT530634 PPIC peptidylprolyl isomerase C 2 4
MIRT530671 CHRNB1 cholinergic receptor nicotinic beta 1 subunit 2 4
MIRT531563 ILDR1 immunoglobulin like domain containing receptor 1 2 2
MIRT538205 CYR61 cysteine rich angiogenic inducer 61 2 2
MIRT538419 COLEC10 collectin subfamily member 10 2 2
MIRT541964 ZNF485 zinc finger protein 485 2 2
MIRT543088 KNSTRN kinetochore localized astrin/SPAG5 binding protein 2 2
MIRT543257 ZNF662 zinc finger protein 662 2 2
MIRT543589 KIAA1549 KIAA1549 2 2
MIRT543955 RNF20 ring finger protein 20 2 2
MIRT544043 C9orf64 chromosome 9 open reading frame 64 2 4
MIRT548064 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT548240 FBXW7 F-box and WD repeat domain containing 7 2 2
MIRT548442 EIF1AX eukaryotic translation initiation factor 1A, X-linked 2 2
MIRT548623 DAZAP1 DAZ associated protein 1 2 4
MIRT548770 COLEC12 collectin subfamily member 12 2 2
MIRT549506 HDDC2 HD domain containing 2 2 4
MIRT551924 AKAP8 A-kinase anchoring protein 8 2 4
MIRT555656 PGRMC1 progesterone receptor membrane component 1 2 2
MIRT556286 MAP3K5 mitogen-activated protein kinase kinase kinase 5 2 2
MIRT557012 HOXD13 homeobox D13 2 4
MIRT563907 CLSPN claspin 2 2
MIRT565527 SON SON DNA binding protein 2 2
MIRT568000 COMMD2 COMM domain containing 2 2 2
MIRT569831 PLA2G16 phospholipase A2 group XVI 2 4
MIRT573905 PARP1 poly(ADP-ribose) polymerase 1 2 2
MIRT616589 KLHL9 kelch like family member 9 2 2
MIRT617137 ZNF556 zinc finger protein 556 2 2
MIRT617400 API5 apoptosis inhibitor 5 2 2
MIRT617455 CCS copper chaperone for superoxide dismutase 2 2
MIRT617799 ZNF793 zinc finger protein 793 2 2
MIRT618190 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT618303 GNE glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase 2 2
MIRT618329 ZNF813 zinc finger protein 813 2 2
MIRT618820 PHF20 PHD finger protein 20 2 2
MIRT619153 PPDPF pancreatic progenitor cell differentiation and proliferation factor 2 2
MIRT619530 ZNF708 zinc finger protein 708 2 2
MIRT619849 KIR3DX1 killer cell immunoglobulin like receptor, three Ig domains X1 2 2
MIRT620806 SLC26A2 solute carrier family 26 member 2 2 2
MIRT621312 YIPF4 Yip1 domain family member 4 2 2
MIRT621358 GUCA1B guanylate cyclase activator 1B 2 2
MIRT621366 ART4 ADP-ribosyltransferase 4 (Dombrock blood group) 2 2
MIRT621547 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT621883 TAOK1 TAO kinase 1 2 2
MIRT622451 RNF19B ring finger protein 19B 2 2
MIRT623404 KREMEN1 kringle containing transmembrane protein 1 2 2
MIRT623587 IPO9 importin 9 2 2
MIRT623974 FAM63A MINDY lysine 48 deubiquitinase 1 2 2
MIRT624086 DPP8 dipeptidyl peptidase 8 2 2
MIRT624108 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT632486 RNF8 ring finger protein 8 2 2
MIRT634057 PLIN3 perilipin 3 2 2
MIRT634657 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT640682 MCUR1 mitochondrial calcium uniporter regulator 1 2 2
MIRT641242 CENPN centromere protein N 2 2
MIRT642260 ZNF677 zinc finger protein 677 2 2
MIRT642954 RELA RELA proto-oncogene, NF-kB subunit 2 2
MIRT644326 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT644632 ICA1L islet cell autoantigen 1 like 2 2
MIRT645721 POLR3A RNA polymerase III subunit A 2 2
MIRT647850 LYPLA1 lysophospholipase I 2 2
MIRT649281 NEK8 NIMA related kinase 8 2 2
MIRT650038 VHL von Hippel-Lindau tumor suppressor 2 2
MIRT650354 RRP36 ribosomal RNA processing 36 2 2
MIRT651144 ZNF384 zinc finger protein 384 2 2
MIRT651778 UTP6 UTP6, small subunit processome component 2 2
MIRT652576 TLCD2 TLC domain containing 2 2 2
MIRT654621 PTPRJ protein tyrosine phosphatase, receptor type J 2 2
MIRT656023 MYO5A myosin VA 2 2
MIRT656105 MSRB3 methionine sulfoxide reductase B3 2 2
MIRT657749 GMEB1 glucocorticoid modulatory element binding protein 1 2 2
MIRT657924 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT658848 DUSP19 dual specificity phosphatase 19 2 2
MIRT659100 DENND6A DENN domain containing 6A 2 2
MIRT659153 DCX doublecortin 2 2
MIRT660870 ADRBK2 G protein-coupled receptor kinase 3 2 2
MIRT661941 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT663577 C10orf32 BLOC-1 related complex subunit 7 2 2
MIRT664625 WDPCP WD repeat containing planar cell polarity effector 2 4
MIRT666562 RHOBTB3 Rho related BTB domain containing 3 2 2
MIRT669992 GPR156 G protein-coupled receptor 156 2 4
MIRT670445 RSBN1L round spermatid basic protein 1 like 2 2
MIRT670853 IFNAR1 interferon alpha and beta receptor subunit 1 2 4
MIRT671942 SPPL3 signal peptide peptidase like 3 2 2
MIRT674269 LMOD3 leiomodin 3 2 2
MIRT674424 MIOX myo-inositol oxygenase 2 4
MIRT674982 ATP5G1 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9) 2 2
MIRT675038 BACE2 beta-site APP-cleaving enzyme 2 2 4
MIRT675309 C2orf68 chromosome 2 open reading frame 68 2 2
MIRT675641 TTPAL alpha tocopherol transfer protein like 2 2
MIRT688688 CPS1 carbamoyl-phosphate synthase 1 2 2
MIRT689369 ZNF101 zinc finger protein 101 2 2
MIRT689605 AKAP6 A-kinase anchoring protein 6 2 2
MIRT691715 LARS leucyl-tRNA synthetase 2 2
MIRT695473 TRAT1 T-cell receptor associated transmembrane adaptor 1 2 2
MIRT695530 MAP4K2 mitogen-activated protein kinase kinase kinase kinase 2 2 2
MIRT695878 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT696586 ORMDL2 ORMDL sphingolipid biosynthesis regulator 2 2 2
MIRT703007 HEATR5A HEAT repeat containing 5A 2 2
MIRT707942 PHKA1 phosphorylase kinase regulatory subunit alpha 1 2 2
MIRT709765 GPR183 G protein-coupled receptor 183 2 2
MIRT710332 ZNF669 zinc finger protein 669 2 2
MIRT713249 ZFP30 ZFP30 zinc finger protein 2 2
MIRT716613 RBM18 RNA binding motif protein 18 2 2
MIRT733414 BAG2 BCL2 associated athanogene 2 2 0
MIRT756135 THSD7A thrombospondin type 1 domain containing 7A 3 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-1 Anthocyanin NULL 145858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Caffeic acid NULL 689043 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Catechin approved 9064 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Curcumin NULL 969516 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Ferulic acid NULL 445858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Hesperidin NULL 10621 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Quercetin NULL 5280343 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Galactose NULL 6036 Quantitative real-time PCR lens 22736950 2012 up-regulated
miR-1 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Quantitative real-time PCR myocardial differentiation of mouse ES cells 19521018 2009 down-regulated
miR-1 Sulfonyl-hydrazone-1 (SHZ) NULL NULL Quantitative real-time PCR Murine broblast-derived Induced pluripotent stem cells 21445862 2011 up-regulated
miR-1 Cocaine NULL 446220 Next-generation sequencing ventral striatum 21708909 2011 up-regulated
miR-1 Atorvastatin approved 60823 Quantitative real-time PCR Cardiomyocyte 23860036 2013 down-regualted
miR-1 Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-1 Docosahexaenoic acid NULL 445580 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 Palmitic acid approved 985 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 17beta-estradiol (E2) approved 5757 Microarray MCF-7AKT breast cancer cells 19528081 2009 down-regulated
miR-1 Essential amino acids (EAA) NULL NULL Quantitative real-time PCR skeletal muscle of young adults 19828686 2009 up-regulated
miR-1 Hydrogen peroxide (H2O2) NULL 784 Quantitative real-time PCR Human umbilical vein endothelial cells 21527937 2011 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Microarray apoptosis-resistant breast cancer cells 21971930 2011 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR acute promyelocytic leukemia 22072212 2012 up-regulated
miR-1 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miR-1 Bicalutamide approved 2375 Microarray prostate 22674191 2012 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR cardia 22889704 2012 up-regulated
miR-1 Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 up-regulated
miR-1 Quinidine approved 441074 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 up-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 down-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR post-infarction rat cardiomyocytes 21220930 2011 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 down-regulated
miR-1 Dexamethasone approved 5743 Microarray adrenals and granulosa cells 24205079 2014 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (RKO)
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (HT-29)
hsa-miR-1303 Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-1303 Fulvestrant 17756771 NSC719276 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-1303 Rituximab sensitive High Diffuse Large B-Cell Lymphoma cell line (DB, NU-DHL-1, NU-DUL-1, MC-116, SU-DHL-4, SU-DHL-5, FARAGE, HBL-1, OCI-Ly3, OCI-Ly7, OCI-Ly8, OCI-Ly19, RIVA, SU-DHL-8, U2932)
hsa-miR-1303 Etoposide 36462 NSC141540 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Doxorubicin 31703 NSC123127 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Vinorelbine 44424639 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Vincristine 5978 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Paclitaxel 36314 NSC125973 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-mir-1303 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-1303 Cisplatin 5460033 NSC119875 approved resistant cell line (W1)
hsa-mir-1303 Topotecan 60699 NSC609699 approved resistant cell line (W1)
hsa-mir-1303 Androstenedione+Letrozole resistant cell line (MCF-7)
hsa-miR-1303 Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-1303 Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-1303 Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-1303 Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-1303 Palbociclib 5330286 NSC758247 approved resistant tissue (breast cancer)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-1303 Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-1303 Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-1303 Doxorubicin 31703 NSC123127 approved resistant cell line (HS578T)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved resistant cell line (CP20)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved sensitive cell line (IGROV-1)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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