pre-miRNA Information
pre-miRNA hsa-mir-4793   
Genomic Coordinates chr3: 48644194 - 48644280
Description Homo sapiens miR-4793 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4793-3p
Sequence 58| UCUGCACUGUGAGUUGGCUGGCU |80
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5899925 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs779602935 6 dbSNP
rs757908486 7 dbSNP
rs1422853760 15 dbSNP
rs377721296 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CASS4   
Synonyms C20orf32, CAS4, HEFL, HEPL
Description Cas scaffolding protein family member 4
Transcript NM_001164114   
Other Transcripts NM_001164115 , NM_001164116 , NM_020356   
Expression
Putative miRNA Targets on CASS4
3'UTR of CASS4
(miRNA target sites are highlighted)
>CASS4|NM_001164114|3'UTR
   1 GGACTGTCTACCTCCCTTCCTCCTCTGCTCACCTCTCAGCTTCACACCCACAACTTGTGCAACTCTGCCCTATGGGAAAA
  81 GCCAGCCGGGGCATACACCAATGAGCTGAAACAGACCTGGTGCCCAAAGCTGGTAGTACCAAGTGGCTAAGCAACCCCAG
 161 GGCATTGACTTACCCCGCAGGGGGTCAGGAAAGAGAGTCAGGTATGAGGTAAAGACCTTGTGAAGTTTAGCATATATGGA
 241 GTATGCAGTATCAGCTTGAAGTGACTTCGCAGAAATAATATTTTATATTGATTAAATGTGTGCATGTTTTGTTTGTTTTT
 321 TGAGACAAAGTCTCACTCTGTCACACAGGCTGGAGTGCAGTGGCGCGATCTCAGCTCACTGCAACCTCCGCCTTCTGGGT
 401 TGAAGCAATTCTCCCGCCTCAGCCTCCAGAGTAGCTGGTACTACAGGTGTGCGCCACCATGCCCAGCTAATTTTTGTATT
 481 TTTTTTTAATGAAAGGTCTCACATATTTATTACTGAACCCAGCCAACCAATGCATTCATAACAGATTCAGAAAGAAAAAA
 561 TATATTCCCAATAAAACATGTACAATTCTCCAG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            :||  ||:  :: ||||||| 
Target 5' tgTCACACAGGCTGGAGTGCAGt 3'
339 - 361 149.00 -15.20
2
miRNA  3' ucGGUCGGUUGAGUGUCACGUcu 5'
            |||||||||   || ||||  
Target 5' acCCAGCCAAC---CAATGCAtt 3'
517 - 536 126.00 -18.80
3
miRNA  3' ucGGUCG--GUUGAGUGUCACGUCu 5'
            || ||  ||:| : ||| |:|| 
Target 5' ctCCCGCCTCAGCCTCCAGAGTAGc 3'
411 - 435 115.00 -15.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30485378 23 COSMIC
COSN30485403 24 COSMIC
COSN27177463 171 COSMIC
COSN25775738 365 COSMIC
COSN31559341 589 COSMIC
COSN24525733 599 COSMIC
COSN21171750 724 COSMIC
COSN24391030 776 COSMIC
COSN24407471 930 COSMIC
COSN17462659 964 COSMIC
COSN10018556 1116 COSMIC
COSN8899972 1310 COSMIC
COSN9144165 1319 COSMIC
COSN8611144 1364 COSMIC
COSN27666238 1490 COSMIC
COSN13869004 1552 COSMIC
COSN24663939 1568 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1359241049 1 dbSNP
rs201872765 3 dbSNP
rs369536191 5 dbSNP
rs567507715 9 dbSNP
rs1426432340 11 dbSNP
rs149315196 12 dbSNP
rs1050925158 16 dbSNP
rs761469998 20 dbSNP
rs376536924 21 dbSNP
rs1331042884 23 dbSNP
rs762500030 24 dbSNP
rs1449562959 28 dbSNP
rs992637097 31 dbSNP
rs1338177460 33 dbSNP
rs1243492911 38 dbSNP
rs766842414 46 dbSNP
rs1357972295 49 dbSNP
rs4811697 54 dbSNP
rs1156898287 58 dbSNP
rs572594122 64 dbSNP
rs1276474068 71 dbSNP
rs577395858 73 dbSNP
rs1045470676 74 dbSNP
rs1312749008 83 dbSNP
rs1388473629 84 dbSNP
rs899226975 88 dbSNP
rs1454033278 89 dbSNP
rs905215811 93 dbSNP
rs1339097669 94 dbSNP
rs1381091515 98 dbSNP
rs1355878273 100 dbSNP
rs546365362 108 dbSNP
rs1307206456 113 dbSNP
rs1424352129 117 dbSNP
rs760678234 124 dbSNP
rs1166013690 128 dbSNP
rs112185885 140 dbSNP
rs577934006 141 dbSNP
rs1481672858 157 dbSNP
rs993076041 165 dbSNP
rs1222031098 166 dbSNP
rs901412740 171 dbSNP
rs1205559619 175 dbSNP
rs191568729 177 dbSNP
rs137858744 178 dbSNP
rs997145576 190 dbSNP
rs1028386333 193 dbSNP
rs1389123608 201 dbSNP
rs766457723 213 dbSNP
rs980265762 225 dbSNP
rs529507123 226 dbSNP
rs1308186466 232 dbSNP
rs952440566 233 dbSNP
rs1364088121 238 dbSNP
rs1458836884 255 dbSNP
rs1363685345 256 dbSNP
rs925712508 264 dbSNP
rs1157574893 269 dbSNP
rs983763444 270 dbSNP
rs1412879823 273 dbSNP
rs1198951537 274 dbSNP
rs1489936043 279 dbSNP
rs1266474141 285 dbSNP
rs1211374343 288 dbSNP
rs554806136 294 dbSNP
rs1488696276 301 dbSNP
rs1421121772 304 dbSNP
rs377435787 307 dbSNP
rs1260013057 331 dbSNP
rs1236792362 336 dbSNP
rs988443662 338 dbSNP
rs1180089357 342 dbSNP
rs912898067 347 dbSNP
rs1330593859 365 dbSNP
rs933933732 366 dbSNP
rs1222500072 367 dbSNP
rs1343295553 368 dbSNP
rs1015272727 371 dbSNP
rs1470569519 376 dbSNP
rs1051439951 380 dbSNP
rs1384709033 384 dbSNP
rs889682541 390 dbSNP
rs1455859540 391 dbSNP
rs1389447940 397 dbSNP
rs1316475415 401 dbSNP
rs1465822839 415 dbSNP
rs142469486 416 dbSNP
rs1479516902 417 dbSNP
rs1431661130 426 dbSNP
rs1199864348 429 dbSNP
rs1433484285 430 dbSNP
rs1038170685 433 dbSNP
rs899255244 434 dbSNP
rs1203296558 435 dbSNP
rs1389380494 453 dbSNP
rs1202439250 454 dbSNP
rs1287154079 454 dbSNP
rs1320830935 455 dbSNP
rs1276186918 458 dbSNP
rs994916789 461 dbSNP
rs1345642075 462 dbSNP
rs1293941347 471 dbSNP
rs1026356728 478 dbSNP
rs917130194 479 dbSNP
rs970361874 479 dbSNP
rs1336678261 480 dbSNP
rs980072758 490 dbSNP
rs925878186 494 dbSNP
rs1173368297 497 dbSNP
rs1356226819 515 dbSNP
rs936664155 518 dbSNP
rs1461721435 528 dbSNP
rs559492456 529 dbSNP
rs1281254262 530 dbSNP
rs1014541965 532 dbSNP
rs1053791760 539 dbSNP
rs1024988855 540 dbSNP
rs970312005 559 dbSNP
rs1002112535 563 dbSNP
rs868283422 569 dbSNP
rs945476989 580 dbSNP
rs1280198606 581 dbSNP
rs1200655183 584 dbSNP
rs1033146298 589 dbSNP
rs1041230123 590 dbSNP
rs528206656 599 dbSNP
rs879934458 600 dbSNP
rs1366398805 601 dbSNP
rs1203326514 613 dbSNP
rs997492044 629 dbSNP
rs988503097 642 dbSNP
rs760063106 647 dbSNP
rs1480775316 652 dbSNP
rs912929449 653 dbSNP
rs1391008507 657 dbSNP
rs551174709 660 dbSNP
rs1170738886 667 dbSNP
rs1431340749 669 dbSNP
rs571250552 672 dbSNP
rs1015220297 681 dbSNP
rs530414283 685 dbSNP
rs550553860 689 dbSNP
rs1433133295 690 dbSNP
rs1187595829 691 dbSNP
rs1436750253 695 dbSNP
rs567569668 696 dbSNP
rs756812320 697 dbSNP
rs536522768 698 dbSNP
rs751281257 698 dbSNP
rs942600929 700 dbSNP
rs1038647206 709 dbSNP
rs1244388166 730 dbSNP
rs35324103 735 dbSNP
rs1427390961 736 dbSNP
rs919753190 739 dbSNP
rs1307080777 744 dbSNP
rs1013983140 750 dbSNP
rs765855244 759 dbSNP
rs930737423 766 dbSNP
rs1047827098 769 dbSNP
rs765604840 776 dbSNP
rs77584750 777 dbSNP
rs1410731697 785 dbSNP
rs756918541 789 dbSNP
rs867945471 795 dbSNP
rs1302354637 796 dbSNP
rs969890471 803 dbSNP
rs1415818602 804 dbSNP
rs780914643 808 dbSNP
rs1163787259 817 dbSNP
rs1215153315 818 dbSNP
rs1409213289 825 dbSNP
rs1183878812 827 dbSNP
rs1045692974 828 dbSNP
rs906115405 835 dbSNP
rs1268582249 837 dbSNP
rs1220666578 846 dbSNP
rs1305599467 853 dbSNP
rs1001784783 862 dbSNP
rs112634823 863 dbSNP
rs369992632 868 dbSNP
rs182966397 873 dbSNP
rs1224743421 889 dbSNP
rs1229213473 894 dbSNP
rs1010332206 904 dbSNP
rs1345076977 905 dbSNP
rs139719252 909 dbSNP
rs1433962312 909 dbSNP
rs989472425 911 dbSNP
rs374510167 912 dbSNP
rs986882281 913 dbSNP
rs910883615 915 dbSNP
rs987817007 917 dbSNP
rs1160792160 922 dbSNP
rs1168355225 926 dbSNP
rs1385405762 929 dbSNP
rs111416975 935 dbSNP
rs767140530 936 dbSNP
rs1321004013 937 dbSNP
rs932812724 939 dbSNP
rs1348834330 943 dbSNP
rs1431361134 944 dbSNP
rs750106961 961 dbSNP
rs543423808 968 dbSNP
rs755629624 969 dbSNP
rs556892741 970 dbSNP
rs1209389821 973 dbSNP
rs888670240 973 dbSNP
rs1046905131 974 dbSNP
rs907960112 975 dbSNP
rs950127673 978 dbSNP
rs1315488259 985 dbSNP
rs1297431923 987 dbSNP
rs1005798589 1000 dbSNP
rs1362891245 1002 dbSNP
rs1322491635 1005 dbSNP
rs1457254496 1012 dbSNP
rs1046182195 1018 dbSNP
rs905859580 1025 dbSNP
rs773879491 1026 dbSNP
rs558387427 1028 dbSNP
rs1239857415 1050 dbSNP
rs574018259 1053 dbSNP
rs1426274347 1058 dbSNP
rs117271682 1064 dbSNP
rs896855701 1075 dbSNP
rs1287779480 1076 dbSNP
rs1321252407 1082 dbSNP
rs1216620313 1093 dbSNP
rs1460928784 1096 dbSNP
rs1013888686 1102 dbSNP
rs1024037724 1104 dbSNP
rs1463943298 1107 dbSNP
rs796357592 1110 dbSNP
rs6099152 1111 dbSNP
rs528657488 1112 dbSNP
rs1010363541 1125 dbSNP
rs753122603 1126 dbSNP
rs756477164 1128 dbSNP
rs1446044900 1130 dbSNP
rs1161146603 1133 dbSNP
rs1412646818 1134 dbSNP
rs1300610724 1135 dbSNP
rs6099153 1140 dbSNP
rs1169328756 1142 dbSNP
rs1160658621 1148 dbSNP
rs564838197 1149 dbSNP
rs1007976939 1155 dbSNP
rs1218735876 1160 dbSNP
rs1392492810 1167 dbSNP
rs1169772880 1168 dbSNP
rs1018379302 1169 dbSNP
rs530579589 1172 dbSNP
rs150657793 1182 dbSNP
rs567236982 1186 dbSNP
rs529705261 1188 dbSNP
rs530048018 1189 dbSNP
rs1337144302 1194 dbSNP
rs1384775369 1204 dbSNP
rs1450444087 1205 dbSNP
rs1276580928 1207 dbSNP
rs546892945 1211 dbSNP
rs1229480384 1212 dbSNP
rs966669582 1212 dbSNP
rs6099154 1216 dbSNP
rs922671800 1218 dbSNP
rs1297250030 1222 dbSNP
rs6099155 1226 dbSNP
rs1327691120 1227 dbSNP
rs552309903 1233 dbSNP
rs1264119173 1236 dbSNP
rs571656143 1253 dbSNP
rs1367182271 1262 dbSNP
rs1167540292 1265 dbSNP
rs985637659 1266 dbSNP
rs1407434322 1273 dbSNP
rs1462895340 1277 dbSNP
rs982619187 1283 dbSNP
rs755268905 1298 dbSNP
rs1236463743 1304 dbSNP
rs1488043913 1321 dbSNP
rs537122748 1326 dbSNP
rs1251158451 1329 dbSNP
rs556952130 1336 dbSNP
rs917748583 1339 dbSNP
rs1321784372 1340 dbSNP
rs1287220480 1348 dbSNP
rs1178419893 1353 dbSNP
rs375551265 1358 dbSNP
rs1456611757 1362 dbSNP
rs1351902074 1375 dbSNP
rs981537085 1379 dbSNP
rs6099156 1393 dbSNP
rs747250147 1398 dbSNP
rs949684686 1401 dbSNP
rs1054346332 1402 dbSNP
rs1458917364 1412 dbSNP
rs1344663621 1416 dbSNP
rs1156983806 1421 dbSNP
rs371137656 1424 dbSNP
rs1045818703 1429 dbSNP
rs1198973326 1434 dbSNP
rs1432384757 1435 dbSNP
rs770954426 1436 dbSNP
rs753154917 1440 dbSNP
rs893399927 1458 dbSNP
rs1225094828 1465 dbSNP
rs16979949 1467 dbSNP
rs188849803 1469 dbSNP
rs140007394 1477 dbSNP
rs149838989 1481 dbSNP
rs1232159613 1484 dbSNP
rs1227885389 1487 dbSNP
rs1284441758 1499 dbSNP
rs1303927143 1500 dbSNP
rs1387741669 1506 dbSNP
rs1020189298 1513 dbSNP
rs776730452 1520 dbSNP
rs1319147253 1521 dbSNP
rs147878767 1526 dbSNP
rs995172596 1531 dbSNP
rs575259079 1533 dbSNP
rs1199031687 1537 dbSNP
rs1267050907 1540 dbSNP
rs1375695809 1548 dbSNP
rs544305131 1553 dbSNP
rs1200679323 1555 dbSNP
rs1030109257 1557 dbSNP
rs773139710 1562 dbSNP
rs67266356 1563 dbSNP
rs985978168 1565 dbSNP
rs529709024 1566 dbSNP
rs982693008 1567 dbSNP
rs1024836789 1568 dbSNP
rs111689421 1576 dbSNP
rs970600116 1576 dbSNP
rs62209459 1582 dbSNP
rs1296043902 1584 dbSNP
rs878876339 1588 dbSNP
rs1477031786 1592 dbSNP
rs950385870 1610 dbSNP
rs1333643221 1614 dbSNP
rs775917696 1616 dbSNP
rs1396992278 1617 dbSNP
rs1404551536 1619 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084042. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep2 HITS-CLIP data was present in GSM1084044. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep3 HITS-CLIP data was present in GSM1084046. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep4 HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb HITS-CLIP data was present in GSM1084069. RNA binding protein: AGO2. Condition:CLIP_emetine_SigmaAb HITS-CLIP data was present in GSM1084072. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep1_AbnovaAb HITS-CLIP data was present in GSM1084077. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep1_SigmaAb HITS-CLIP data was present in GSM1084078. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_AbnovaAb HITS-CLIP data was present in GSM1084079. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM4903832
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / 124TD_shELAVL3_b
Location of target site NM_020356 | 3UTR | UGUCACACAGGCUGGAGUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_001164114 | 3UTR | UUGUUUGUUUUUUGAGACAAAGUCUCACUCUGUCACACAGGCUGGAGUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_001164114 | 3UTR | UCACACAGGCUGGAGUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1084042
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep2
Location of target site ENST00000371336.3 | 3UTR | ACAGGCUGGAGUGCAGUGGCGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM1084044
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep3
Location of target site ENST00000371336.3 | 3UTR | ACAGGCUGGAGUGCAGUGGCGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM1084046
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep4
Location of target site ENST00000371336.3 | 3UTR | CACAGGCUGGAGUGCAGUGGCGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000371336.3 | 3UTR | CACAGGCUGGAGUGCAGUGGCGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000371336.3 | 3UTR | CACACAGGCUGGAGUGCAGUGGCGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 9 for dataset GSM1084069
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_SigmaAb
Location of target site ENST00000371336.3 | 3UTR | ACAGGCUGGAGUGCAGUGGCGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 10 for dataset GSM1084072
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep1_AbnovaAb
Location of target site ENST00000371336.3 | 3UTR | CACACAGGCUGGAGUGCAGUGGCGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 11 for dataset GSM1084077
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep1_SigmaAb
Location of target site ENST00000371336.3 | 3UTR | ACAGGCUGGAGUGCAGUGGCGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 12 for dataset GSM1084078
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep2_AbnovaAb
Location of target site ENST00000371336.3 | 3UTR | ACAGGCUGGAGUGCAGUGGCGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 13 for dataset GSM1084079
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_AbnovaAb
Location of target site ENST00000371336.3 | 3UTR | CACACAGGCUGGAGUGCAGUGGCGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
296 hsa-miR-4793-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092332 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT131237 ATG2A autophagy related 2A 2 2
MIRT145926 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT206559 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT226455 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT337662 ZNF695 zinc finger protein 695 2 2
MIRT405828 SIX4 SIX homeobox 4 2 2
MIRT455113 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT456756 TMEM239 transmembrane protein 239 2 4
MIRT457974 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT458173 LYRM4 LYR motif containing 4 2 4
MIRT458245 SLC9A7 solute carrier family 9 member A7 2 2
MIRT466145 TMEM120B transmembrane protein 120B 2 2
MIRT474981 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT475601 HMGB2 high mobility group box 2 2 4
MIRT480759 BMP3 bone morphogenetic protein 3 2 4
MIRT481156 AVL9 AVL9 cell migration associated 2 2
MIRT482155 AK2 adenylate kinase 2 2 2
MIRT488386 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT496575 KIF18B kinesin family member 18B 2 2
MIRT498411 TXNDC16 thioredoxin domain containing 16 2 4
MIRT504547 ZNF417 zinc finger protein 417 2 6
MIRT505417 TCF7L2 transcription factor 7 like 2 2 2
MIRT509349 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 6
MIRT512164 CD164 CD164 molecule 2 6
MIRT517238 PRIM1 DNA primase subunit 1 2 2
MIRT518671 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT519298 MLH1 mutL homolog 1 2 2
MIRT523662 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT525452 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539847 ZNF766 zinc finger protein 766 2 2
MIRT540076 SSH3 slingshot protein phosphatase 3 2 2
MIRT540320 PIGR polymeric immunoglobulin receptor 2 2
MIRT540548 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT540759 UTP6 UTP6, small subunit processome component 2 2
MIRT541545 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT541553 SLC35E1 solute carrier family 35 member E1 2 2
MIRT541666 ATP8B3 ATPase phospholipid transporting 8B3 2 4
MIRT541722 TFDP2 transcription factor Dp-2 2 2
MIRT541800 DUSP28 dual specificity phosphatase 28 2 2
MIRT541816 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT541907 VWA7 von Willebrand factor A domain containing 7 2 2
MIRT542154 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT542207 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542233 FUT9 fucosyltransferase 9 2 2
MIRT542320 SERPING1 serpin family G member 1 2 2
MIRT542369 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542476 APOC3 apolipoprotein C3 2 2
MIRT542641 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542660 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT542749 PRRG4 proline rich and Gla domain 4 2 4
MIRT542789 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT545442 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT546206 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT552270 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552655 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT554134 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT556795 KIAA1958 KIAA1958 2 2
MIRT564762 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT569428 STX7 syntaxin 7 2 2
MIRT573245 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT607390 LANCL3 LanC like 3 2 2
MIRT607430 NOTCH2NL notch 2 N-terminal like 2 2
MIRT607452 ZNF543 zinc finger protein 543 2 2
MIRT607580 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT607748 ANGPT4 angiopoietin 4 2 2
MIRT607907 SPRYD4 SPRY domain containing 4 2 2
MIRT608703 GMPR guanosine monophosphate reductase 2 2
MIRT612127 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 2 2
MIRT612786 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT616692 LPL lipoprotein lipase 2 2
MIRT617045 ZNF610 zinc finger protein 610 2 2
MIRT617091 ZNF43 zinc finger protein 43 2 2
MIRT617314 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT617355 MELK maternal embryonic leucine zipper kinase 2 2
MIRT617486 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT617579 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT617669 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT617722 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617893 PTCHD3 patched domain containing 3 2 2
MIRT617982 ZNF234 zinc finger protein 234 2 4
MIRT618434 MYLK3 myosin light chain kinase 3 2 4
MIRT618732 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT619045 CASS4 Cas scaffolding protein family member 4 2 2
MIRT619573 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT619671 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT619887 ABHD17B abhydrolase domain containing 17B 2 2
MIRT620519 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT620535 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT620996 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT621304 YIPF4 Yip1 domain family member 4 2 2
MIRT622086 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622168 SMYD1 SET and MYND domain containing 1 2 2
MIRT622543 PXMP4 peroxisomal membrane protein 4 2 2
MIRT622761 PGM3 phosphoglucomutase 3 2 2
MIRT622885 PDCL3 phosducin like 3 2 4
MIRT623130 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 2 2
MIRT624840 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT625047 MBD3 methyl-CpG binding domain protein 3 2 2
MIRT625059 ZNF556 zinc finger protein 556 2 2
MIRT625508 PPAPDC1A phospholipid phosphatase 4 2 2
MIRT625573 ANKRD42 ankyrin repeat domain 42 2 2
MIRT626133 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT626327 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626765 CDC14B cell division cycle 14B 2 2
MIRT626798 CSE1L chromosome segregation 1 like 2 2
MIRT627212 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT627225 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT627256 XKR4 XK related 4 2 2
MIRT628190 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT628466 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT628627 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT629040 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT630847 ACACB acetyl-CoA carboxylase beta 2 2
MIRT631721 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT632264 USP1 ubiquitin specific peptidase 1 2 4
MIRT632571 POLQ DNA polymerase theta 2 2
MIRT633992 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635211 ZNF286A zinc finger protein 286A 2 4
MIRT635249 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635261 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT635283 GK5 glycerol kinase 5 (putative) 2 2
MIRT635663 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT636251 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT636564 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT636814 TBC1D24 TBC1 domain family member 24 2 2
MIRT637358 ZNF460 zinc finger protein 460 2 2
MIRT637473 DEFB105B defensin beta 105B 2 4
MIRT637505 DEFB105A defensin beta 105A 2 4
MIRT637861 SC5D sterol-C5-desaturase 2 2
MIRT638080 ZNF652 zinc finger protein 652 2 2
MIRT638096 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT638174 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT638201 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT638278 SH2B3 SH2B adaptor protein 3 2 2
MIRT638714 FUT11 fucosyltransferase 11 2 2
MIRT638852 CLMP CXADR like membrane protein 2 2
MIRT639815 TMED8 transmembrane p24 trafficking protein family member 8 2 2
MIRT640879 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT640937 FAM129A family with sequence similarity 129 member A 2 2
MIRT640971 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT641642 GNAZ G protein subunit alpha z 2 2
MIRT641931 SLC25A16 solute carrier family 25 member 16 2 2
MIRT642136 CRY2 cryptochrome circadian clock 2 2 2
MIRT643199 JAK3 Janus kinase 3 2 2
MIRT643256 ZNF566 zinc finger protein 566 2 2
MIRT643378 TRIM16L tripartite motif containing 16 like 2 2
MIRT643683 AMER3 APC membrane recruitment protein 3 2 2
MIRT643728 MCMDC2 minichromosome maintenance domain containing 2 2 2
MIRT643949 CCDC141 coiled-coil domain containing 141 2 2
MIRT644915 SERF1B small EDRK-rich factor 1B 2 2
MIRT645163 NOL9 nucleolar protein 9 2 2
MIRT645547 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT645550 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT645572 TACR2 tachykinin receptor 2 2 2
MIRT646697 SERF1A small EDRK-rich factor 1A 2 2
MIRT647806 FRMD8 FERM domain containing 8 2 2
MIRT647903 CIRH1A UTP4, small subunit processome component 2 2
MIRT648978 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT649907 SLFN12L schlafen family member 12 like 2 2
MIRT650224 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT651880 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT651935 UBN1 ubinuclein 1 2 2
MIRT652839 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT652994 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT654800 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655591 OTUD7B OTU deubiquitinase 7B 2 2
MIRT658760 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT659358 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT660717 AMER1 APC membrane recruitment protein 1 2 2
MIRT660737 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT661088 TMEM145 transmembrane protein 145 2 2
MIRT661176 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT662005 ZNF445 zinc finger protein 445 2 2
MIRT662178 KIAA1210 KIAA1210 2 2
MIRT662270 OR51E2 olfactory receptor family 51 subfamily E member 2 2 2
MIRT663046 SLC16A4 solute carrier family 16 member 4 2 2
MIRT663476 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT664039 RPL27A ribosomal protein L27a 2 2
MIRT664096 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT664109 FUT1 fucosyltransferase 1 (H blood group) 2 2
MIRT664317 CD209 CD209 molecule 2 2
MIRT664455 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT664595 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 4
MIRT664694 DBF4 DBF4 zinc finger 2 2
MIRT665162 SF3A1 splicing factor 3a subunit 1 2 2
MIRT665214 RBM22 RNA binding motif protein 22 2 2
MIRT665254 ZNF286B zinc finger protein 286B 2 2
MIRT665268 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT665606 TTC39A tetratricopeptide repeat domain 39A 2 2
MIRT665830 TIMELESS timeless circadian clock 2 2
MIRT666201 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT666546 RNF115 ring finger protein 115 2 2
MIRT666602 REEP3 receptor accessory protein 3 2 2
MIRT666862 POU2F3 POU class 2 homeobox 3 2 4
MIRT666886 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT667158 NRXN3 neurexin 3 2 2
MIRT667252 NEK9 NIMA related kinase 9 2 2
MIRT667419 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT667434 METTL8 methyltransferase like 8 2 2
MIRT668023 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT668062 GPR75 G protein-coupled receptor 75 2 2
MIRT668070 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT668607 EHD4 EH domain containing 4 2 4
MIRT668694 DNAL1 dynein axonemal light chain 1 2 2
MIRT668782 DAAM1 dishevelled associated activator of morphogenesis 1 2 2
MIRT669037 CHEK1 checkpoint kinase 1 2 2
MIRT669044 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT669156 CCNG1 cyclin G1 2 2
MIRT670090 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT670206 SLC24A4 solute carrier family 24 member 4 2 2
MIRT672488 FUS FUS RNA binding protein 2 2
MIRT673830 SLC11A2 solute carrier family 11 member 2 2 2
MIRT675481 VEGFC vascular endothelial growth factor C 2 2
MIRT675634 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT677913 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678420 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678626 OLFML2A olfactomedin like 2A 2 2
MIRT678791 NUPL2 nucleoporin like 2 2 2
MIRT679561 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT680743 CA5B carbonic anhydrase 5B 2 2
MIRT682481 LIX1L limb and CNS expressed 1 like 2 4
MIRT682701 PSMD9 proteasome 26S subunit, non-ATPase 9 2 2
MIRT682759 MDM2 MDM2 proto-oncogene 2 2
MIRT682811 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682847 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT682896 XIAP X-linked inhibitor of apoptosis 2 2
MIRT682916 FAM73A mitoguardin 1 2 2
MIRT682935 ZNF292 zinc finger protein 292 2 2
MIRT682953 RPL12 ribosomal protein L12 2 2
MIRT682972 NF2 neurofibromin 2 2 2
MIRT683033 SUSD5 sushi domain containing 5 2 2
MIRT683081 A1BG alpha-1-B glycoprotein 2 2
MIRT683105 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT686640 TMEM184C transmembrane protein 184C 2 2
MIRT687444 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688401 EMC8 ER membrane protein complex subunit 8 2 2
MIRT688886 C3orf70 chromosome 3 open reading frame 70 2 2
MIRT689148 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 2 2
MIRT689234 RPS19 ribosomal protein S19 2 2
MIRT689306 C5AR2 complement component 5a receptor 2 2 2
MIRT689364 ZNF101 zinc finger protein 101 2 2
MIRT689498 SCARF1 scavenger receptor class F member 1 2 2
MIRT689655 RBM23 RNA binding motif protein 23 2 2
MIRT689897 SOD2 superoxide dismutase 2 2 2
MIRT690150 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT690601 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690805 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT690946 GLG1 golgi glycoprotein 1 2 2
MIRT691388 ATP13A4 ATPase 13A4 2 2
MIRT691408 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT692175 LRRC3C leucine rich repeat containing 3C 2 2
MIRT692235 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693283 GINM1 glycoprotein integral membrane 1 2 2
MIRT693439 TPGS1 tubulin polyglutamylase complex subunit 1 2 2
MIRT693460 HIST1H2AG histone cluster 1 H2A family member g 2 2
MIRT693768 ZNF383 zinc finger protein 383 2 2
MIRT694018 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694236 ZNF749 zinc finger protein 749 2 2
MIRT694321 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694347 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT694430 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT695763 WDR35 WD repeat domain 35 2 2
MIRT696167 TIPIN TIMELESS interacting protein 2 2
MIRT696417 DOCK7 dedicator of cytokinesis 7 2 2
MIRT696543 C3 complement C3 2 2
MIRT696998 CCDC80 coiled-coil domain containing 80 2 2
MIRT697232 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697806 UBXN2A UBX domain protein 2A 2 2
MIRT697944 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT698161 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT698778 STK4 serine/threonine kinase 4 2 2
MIRT700259 RBM12B RNA binding motif protein 12B 2 2
MIRT700970 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT701251 NUP35 nucleoporin 35 2 2
MIRT701607 MYPN myopalladin 2 2
MIRT702457 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702613 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT702691 IRGQ immunity related GTPase Q 2 2
MIRT702934 HMX3 H6 family homeobox 3 2 2
MIRT702991 HERPUD2 HERPUD family member 2 2 2
MIRT703148 GPR137C G protein-coupled receptor 137C 2 2
MIRT703980 EMC1 ER membrane protein complex subunit 1 2 2
MIRT704569 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT705065 C4orf32 family with sequence similarity 241 member A 2 2
MIRT705447 ATL2 atlastin GTPase 2 2 2
MIRT705856 AFF3 AF4/FMR2 family member 3 2 2
MIRT705886 ADIPOR2 adiponectin receptor 2 2 2
MIRT714370 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT715784 PHF12 PHD finger protein 12 2 2
MIRT715864 KIAA0101 PCNA clamp associated factor 2 2
MIRT715947 NUP93 nucleoporin 93 2 2
MIRT716132 THOC5 THO complex 5 2 2
MIRT717084 EBF4 early B-cell factor 4 2 2
MIRT725424 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT736091 GREM1 gremlin 1, DAN family BMP antagonist 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4793 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4793-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4793-3p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4793-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

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