pre-miRNA Information
pre-miRNA hsa-mir-6818   
Genomic Coordinates chr22: 30007049 - 30007113
Description Homo sapiens miR-6818 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6818-3p
Sequence 44| UUGUCUCUUGUUCCUCACACAG |65
Evidence Experimental
Experiments Meta-analysis
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1325627700 2 dbSNP
rs750902684 3 dbSNP
rs756542190 6 dbSNP
rs1365035732 17 dbSNP
Putative Targets

Gene Information
Gene Symbol BSND   
Synonyms BART, DFNB73
Description barttin CLCNK type accessory beta subunit
Transcript NM_057176   
Expression
Putative miRNA Targets on BSND
3'UTR of BSND
(miRNA target sites are highlighted)
>BSND|NM_057176|3'UTR
   1 GATGTTTGTGCTCCGTAGCTTCTAGTCTGGAACTGCTGCTGACCCCTGTGTGACATCACAGGGCCTCAGTTTCCCTATCT
  81 GCAAAATGGGATGATATGGAGGTTCAATGAGATGGTGGCATTTTGAGAATGGTAAAGAAATACACAGGGAGGGGATGATG
 161 ACTAAAAAAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gacACACUCCUUGUU-CUCUGUu 5'
             || ||||  ||| ||||:: 
Target 5' ataTG-GAGGTTCAATGAGATGg 3'
94 - 115 102.00 -13.50
2
miRNA  3' gaCACACUCCUUGU-UCUCUGuu 5'
            ||||||  | || ||:| |  
Target 5' ctGTGTGA-CATCACAGGGCCtc 3'
46 - 67 95.00 -13.90
3
miRNA  3' gacacACUCCUUGUUCUCUGUu 5'
               ||| || :|| | | | 
Target 5' ggggaTGATGACTAAAAAAAAa 3'
151 - 172 69.00 -6.11
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
875270 7 ClinVar
46544 15 ClinVar
875271 16 ClinVar
297681 25 ClinVar
876227 57 ClinVar
1194587 90 ClinVar
297682 95 ClinVar
368877 176 ClinVar
1191610 305 ClinVar
COSN15623330 2 COSMIC
COSN5742264 15 COSMIC
COSN26968121 20 COSMIC
COSN28670327 25 COSMIC
COSN30456023 46 COSMIC
COSN31512464 51 COSMIC
COSN30484472 64 COSMIC
COSN30461097 66 COSMIC
COSN13552897 74 COSMIC
COSN30513834 76 COSMIC
COSN24383978 94 COSMIC
COSN30459642 104 COSMIC
COSN19693394 119 COSMIC
COSN28614060 176 COSMIC
COSN23136529 184 COSMIC
COSN21368788 505 COSMIC
COSN26350355 1374 COSMIC
COSN1106024 1553 COSMIC
COSN17217254 1563 COSMIC
COSN7224139 1635 COSMIC
COSN28098309 1842 COSMIC
COSN23785405 1874 COSMIC
COSN23063148 1927 COSMIC
COSN21789305 1945 COSMIC
COSN10050363 1970 COSMIC
COSN7224140 2006 COSMIC
COSN10050364 2241 COSMIC
COSN7224141 2508 COSMIC
COSN29230034 2615 COSMIC
COSN8474399 2755 COSMIC
COSN5204134 2758 COSMIC
COSN6460325 3027 COSMIC
rs139902163 3683 GWAS
rs2149039 6074 GWAS
rs17111479 7532 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1348391503 3 dbSNP
rs570334765 5 dbSNP
rs775078862 7 dbSNP
rs866240212 14 dbSNP
rs187356092 15 dbSNP
rs777675138 16 dbSNP
rs1379258264 20 dbSNP
rs1272603886 21 dbSNP
rs6682884 25 dbSNP
rs1171426554 26 dbSNP
rs767537668 35 dbSNP
rs773180691 36 dbSNP
rs766628986 37 dbSNP
rs760505288 39 dbSNP
rs766729680 40 dbSNP
rs375969225 41 dbSNP
rs755150850 44 dbSNP
rs765418124 45 dbSNP
rs752698091 46 dbSNP
rs758986555 47 dbSNP
rs1207535652 49 dbSNP
rs778215273 50 dbSNP
rs1488991676 56 dbSNP
rs1445213570 57 dbSNP
rs576266601 59 dbSNP
rs113035021 90 dbSNP
rs80300625 95 dbSNP
rs888868911 98 dbSNP
rs1007278350 103 dbSNP
rs1277888056 107 dbSNP
rs985425475 110 dbSNP
rs1344528449 114 dbSNP
rs1182923006 126 dbSNP
rs1040620746 135 dbSNP
rs1417447104 138 dbSNP
rs909451089 142 dbSNP
rs1422247306 143 dbSNP
rs1324745489 144 dbSNP
rs1336768624 153 dbSNP
rs940885350 155 dbSNP
rs1350305475 158 dbSNP
rs771083195 160 dbSNP
rs1036526228 170 dbSNP
rs1461284195 173 dbSNP
rs4339899 176 dbSNP
rs1166958621 179 dbSNP
rs1372258163 179 dbSNP
rs1474174134 184 dbSNP
rs1369671993 186 dbSNP
rs1409917368 188 dbSNP
rs140033441 189 dbSNP
rs1292078798 192 dbSNP
rs1188213179 198 dbSNP
rs1485282415 205 dbSNP
rs1255168167 207 dbSNP
rs938732063 209 dbSNP
rs564533706 210 dbSNP
rs1206963177 211 dbSNP
rs1484164094 227 dbSNP
rs143558763 233 dbSNP
rs1353209988 238 dbSNP
rs1337573253 241 dbSNP
rs1285986328 247 dbSNP
rs1246191288 251 dbSNP
rs533170568 260 dbSNP
rs543937190 262 dbSNP
rs1371545063 265 dbSNP
rs1020852198 269 dbSNP
rs1322754946 270 dbSNP
rs1327827236 274 dbSNP
rs1407828733 276 dbSNP
rs1392299426 279 dbSNP
rs967811895 281 dbSNP
rs1044063367 283 dbSNP
rs1415499002 289 dbSNP
rs1484296181 290 dbSNP
rs1206001363 292 dbSNP
rs114028133 294 dbSNP
rs1033096391 304 dbSNP
rs1472821835 305 dbSNP
rs201836233 305 dbSNP
rs531540492 306 dbSNP
rs1436241754 309 dbSNP
rs1030802179 312 dbSNP
rs548378984 314 dbSNP
rs958784288 316 dbSNP
rs965794975 319 dbSNP
rs146394727 328 dbSNP
rs1271891759 329 dbSNP
rs997238826 330 dbSNP
rs1374561003 332 dbSNP
rs1439601445 340 dbSNP
rs74706722 342 dbSNP
rs1323654226 346 dbSNP
rs1460528856 348 dbSNP
rs115047748 350 dbSNP
rs972747935 351 dbSNP
rs1161329890 355 dbSNP
rs1391970825 356 dbSNP
rs570470805 363 dbSNP
rs1407002600 366 dbSNP
rs539051449 372 dbSNP
rs150046763 377 dbSNP
rs2864124 379 dbSNP
rs1356976098 383 dbSNP
rs769233346 386 dbSNP
rs1449561085 388 dbSNP
rs972648237 392 dbSNP
rs943113510 399 dbSNP
rs1040101338 400 dbSNP
rs901697368 406 dbSNP
rs945216408 407 dbSNP
rs772794280 411 dbSNP
rs915981450 412 dbSNP
rs1347580032 416 dbSNP
rs1042731231 420 dbSNP
rs1439662255 421 dbSNP
rs1368182746 424 dbSNP
rs1321909871 435 dbSNP
rs1431404292 436 dbSNP
rs903777846 440 dbSNP
rs1344464683 449 dbSNP
rs1221403165 450 dbSNP
rs1000697860 451 dbSNP
rs1416017165 454 dbSNP
rs1032981150 459 dbSNP
rs1174540744 464 dbSNP
rs535674552 466 dbSNP
rs762560177 467 dbSNP
rs12134118 472 dbSNP
rs1486483835 489 dbSNP
rs572284240 490 dbSNP
rs1214262959 491 dbSNP
rs543148717 494 dbSNP
rs1444547104 501 dbSNP
rs1212251284 504 dbSNP
rs1233133263 513 dbSNP
rs1345220020 514 dbSNP
rs1299179049 517 dbSNP
rs1214714355 526 dbSNP
rs541757403 530 dbSNP
rs1488725473 543 dbSNP
rs1287093200 547 dbSNP
rs935229280 552 dbSNP
rs1186477976 563 dbSNP
rs751245991 565 dbSNP
rs192197777 566 dbSNP
rs1170716227 570 dbSNP
rs972257704 579 dbSNP
rs1429259791 580 dbSNP
rs1418871897 590 dbSNP
rs1026861813 591 dbSNP
rs901654173 593 dbSNP
rs1474029798 594 dbSNP
rs1258662349 597 dbSNP
rs1449817922 598 dbSNP
rs1172993809 610 dbSNP
rs577978268 637 dbSNP
rs2479402 638 dbSNP
rs1415683587 641 dbSNP
rs1176100698 643 dbSNP
rs145349471 657 dbSNP
rs1028777268 659 dbSNP
rs149067414 660 dbSNP
rs976265603 678 dbSNP
rs1292460657 689 dbSNP
rs142120679 692 dbSNP
rs1372167622 693 dbSNP
rs1436273709 694 dbSNP
rs181790290 696 dbSNP
rs1354047380 697 dbSNP
rs561889951 698 dbSNP
rs962619435 701 dbSNP
rs755956375 704 dbSNP
rs527488076 710 dbSNP
rs972263859 713 dbSNP
rs1035884057 717 dbSNP
rs1254390186 726 dbSNP
rs151161246 732 dbSNP
rs764106391 733 dbSNP
rs936604367 737 dbSNP
rs1054941166 746 dbSNP
rs1231343106 749 dbSNP
rs573664886 759 dbSNP
rs535420118 760 dbSNP
rs116398865 761 dbSNP
rs935264408 768 dbSNP
rs1372806338 769 dbSNP
rs549481838 775 dbSNP
rs1024851127 776 dbSNP
rs1463143295 777 dbSNP
rs1395271230 778 dbSNP
rs1460292580 779 dbSNP
rs1365945073 781 dbSNP
rs569428101 783 dbSNP
rs1192700856 784 dbSNP
rs185923509 785 dbSNP
rs1478947752 789 dbSNP
rs1191675132 795 dbSNP
rs2495512 804 dbSNP
rs1251804628 812 dbSNP
rs1455178865 815 dbSNP
rs565973401 823 dbSNP
rs1388831998 824 dbSNP
rs1005938421 828 dbSNP
rs1458109236 832 dbSNP
rs1238141055 837 dbSNP
rs1314908318 838 dbSNP
rs11206505 841 dbSNP
rs779018762 855 dbSNP
rs1443352938 861 dbSNP
rs778001219 862 dbSNP
rs897512785 876 dbSNP
rs993109621 878 dbSNP
rs1387700946 881 dbSNP
rs1289951507 899 dbSNP
rs1403993317 901 dbSNP
rs141126171 903 dbSNP
rs1035936227 906 dbSNP
rs1275938601 907 dbSNP
rs1350009459 913 dbSNP
rs1454406268 914 dbSNP
rs1393965552 926 dbSNP
rs1191148425 927 dbSNP
rs960277481 929 dbSNP
rs964410006 931 dbSNP
rs578168211 933 dbSNP
rs537470002 934 dbSNP
rs1257489792 942 dbSNP
rs1163317504 944 dbSNP
rs867651114 946 dbSNP
rs1236809669 950 dbSNP
rs1348786637 952 dbSNP
rs966494367 954 dbSNP
rs1302783125 955 dbSNP
rs1023098584 956 dbSNP
rs1328269319 958 dbSNP
rs557428403 966 dbSNP
rs1382130411 980 dbSNP
rs1383285218 980 dbSNP
rs146919666 991 dbSNP
rs1434967317 996 dbSNP
rs543187915 998 dbSNP
rs1171362690 1015 dbSNP
rs559874818 1020 dbSNP
rs916488116 1029 dbSNP
rs758682467 1036 dbSNP
rs1259360852 1038 dbSNP
rs976743151 1038 dbSNP
rs1211263263 1040 dbSNP
rs949290490 1043 dbSNP
rs190333910 1044 dbSNP
rs1474652858 1045 dbSNP
rs1341618255 1046 dbSNP
rs545839085 1047 dbSNP
rs907172138 1048 dbSNP
rs1050261901 1049 dbSNP
rs910360369 1055 dbSNP
rs993617002 1064 dbSNP
rs1047825331 1080 dbSNP
rs1295644372 1098 dbSNP
rs941838427 1107 dbSNP
rs887974578 1118 dbSNP
rs182529816 1124 dbSNP
rs747418081 1139 dbSNP
rs564426437 1142 dbSNP
rs768982402 1143 dbSNP
rs1408092641 1155 dbSNP
rs964991526 1157 dbSNP
rs998141242 1174 dbSNP
rs1351151902 1179 dbSNP
rs533044325 1181 dbSNP
rs2015721 1183 dbSNP
rs1185714496 1220 dbSNP
rs1439731737 1220 dbSNP
rs1273805549 1226 dbSNP
rs977832056 1227 dbSNP
rs1013093181 1232 dbSNP
rs1358290404 1234 dbSNP
rs748725522 1235 dbSNP
rs770544931 1236 dbSNP
rs573016712 1242 dbSNP
rs1031791033 1244 dbSNP
rs1443930067 1251 dbSNP
rs561652321 1253 dbSNP
rs916382271 1275 dbSNP
rs147651726 1276 dbSNP
rs142269312 1288 dbSNP
rs1165625289 1290 dbSNP
rs548679488 1292 dbSNP
rs1415429229 1293 dbSNP
rs1160013801 1296 dbSNP
rs986086760 1299 dbSNP
rs1233736293 1316 dbSNP
rs565593142 1318 dbSNP
rs1181325994 1323 dbSNP
rs1456542789 1325 dbSNP
rs7540038 1326 dbSNP
rs775088141 1332 dbSNP
rs551650110 1338 dbSNP
rs1390124052 1345 dbSNP
rs1037935720 1352 dbSNP
rs1351845057 1353 dbSNP
rs919015894 1360 dbSNP
rs772537154 1362 dbSNP
rs763860147 1368 dbSNP
rs1006270118 1369 dbSNP
rs1039226436 1370 dbSNP
rs150147871 1373 dbSNP
rs997796722 1381 dbSNP
rs1332443932 1382 dbSNP
rs188243555 1383 dbSNP
rs190931002 1384 dbSNP
rs369381564 1393 dbSNP
rs1158237469 1396 dbSNP
rs7528509 1405 dbSNP
rs1194277456 1419 dbSNP
rs1396975050 1419 dbSNP
rs372406482 1426 dbSNP
rs750529197 1428 dbSNP
rs1245547975 1429 dbSNP
rs1275248187 1433 dbSNP
rs957793025 1435 dbSNP
rs138580399 1439 dbSNP
rs1032219880 1459 dbSNP
rs1283941926 1460 dbSNP
rs1198156651 1462 dbSNP
rs1257847625 1463 dbSNP
rs956118248 1475 dbSNP
rs990503055 1482 dbSNP
rs547981419 1488 dbSNP
rs998245473 1492 dbSNP
rs1029731570 1501 dbSNP
rs954054523 1508 dbSNP
rs1344421731 1513 dbSNP
rs761238216 1516 dbSNP
rs1296046359 1523 dbSNP
rs1418114812 1529 dbSNP
rs985855910 1533 dbSNP
rs1171119244 1555 dbSNP
rs111689168 1560 dbSNP
rs1174491760 1564 dbSNP
rs1391259427 1567 dbSNP
rs982080364 1568 dbSNP
rs1453911736 1569 dbSNP
rs553504163 1573 dbSNP
rs1309695030 1579 dbSNP
rs910507815 1583 dbSNP
rs943645 1588 dbSNP
rs1241894032 1592 dbSNP
rs1214825327 1593 dbSNP
rs182761240 1612 dbSNP
rs1280652241 1628 dbSNP
rs1209684462 1634 dbSNP
rs983454622 1643 dbSNP
rs1309960209 1647 dbSNP
rs1274452899 1652 dbSNP
rs866772386 1653 dbSNP
rs1219093327 1658 dbSNP
rs919062481 1660 dbSNP
rs6588543 1666 dbSNP
rs1416462008 1667 dbSNP
rs12078823 1676 dbSNP
rs1355820779 1679 dbSNP
rs1313770232 1686 dbSNP
rs187517231 1692 dbSNP
rs992560515 1696 dbSNP
rs192577434 1703 dbSNP
rs1172533936 1705 dbSNP
rs1411025810 1711 dbSNP
rs371578744 1712 dbSNP
rs1192093741 1718 dbSNP
rs562872574 1719 dbSNP
rs1258601841 1727 dbSNP
rs1186823925 1736 dbSNP
rs1482032998 1739 dbSNP
rs1252568872 1740 dbSNP
rs900692762 1744 dbSNP
rs1362836208 1747 dbSNP
rs948424446 1748 dbSNP
rs1256123679 1749 dbSNP
rs933469084 1750 dbSNP
rs528862571 1751 dbSNP
rs867195450 1752 dbSNP
rs1298243381 1760 dbSNP
rs1395672990 1765 dbSNP
rs1330386684 1768 dbSNP
rs1044453228 1777 dbSNP
rs1300099831 1780 dbSNP
rs747265526 1796 dbSNP
rs1399617209 1807 dbSNP
rs1169193979 1810 dbSNP
rs1230462271 1815 dbSNP
rs755360209 1820 dbSNP
rs904777241 1824 dbSNP
rs902760350 1826 dbSNP
rs1422420581 1827 dbSNP
rs1252314837 1829 dbSNP
rs999691710 1837 dbSNP
rs936218751 1841 dbSNP
rs1031982355 1842 dbSNP
rs1215520277 1843 dbSNP
rs542189727 1846 dbSNP
rs559416386 1848 dbSNP
rs1029785508 1849 dbSNP
rs1463830473 1851 dbSNP
rs889870666 1862 dbSNP
rs1224497209 1866 dbSNP
rs1376298421 1867 dbSNP
rs1263075191 1870 dbSNP
rs35157816 1870 dbSNP
rs1329325292 1871 dbSNP
rs1023793210 1874 dbSNP
rs528210523 1875 dbSNP
rs149288759 1877 dbSNP
rs2495511 1878 dbSNP
rs1478388713 1884 dbSNP
rs963339265 1888 dbSNP
rs1158791977 1890 dbSNP
rs973704385 1892 dbSNP
rs184761686 1897 dbSNP
rs1025437502 1901 dbSNP
rs796770541 1902 dbSNP
rs551302186 1906 dbSNP
rs1207952665 1907 dbSNP
rs567910392 1913 dbSNP
rs1261055551 1915 dbSNP
rs536665717 1917 dbSNP
rs1026170148 1918 dbSNP
rs1307333664 1922 dbSNP
rs1320918941 1925 dbSNP
rs553058070 1926 dbSNP
rs984007952 1929 dbSNP
rs1389959276 1930 dbSNP
rs1301246939 1931 dbSNP
rs950582342 1938 dbSNP
rs566842893 1941 dbSNP
rs770790043 1945 dbSNP
rs941991037 1946 dbSNP
rs538784516 1955 dbSNP
rs979802888 1956 dbSNP
rs1286091262 1957 dbSNP
rs974882105 1961 dbSNP
rs559001083 1965 dbSNP
rs1376550247 1976 dbSNP
rs922000572 1984 dbSNP
rs1430169564 1985 dbSNP
rs1211006013 1998 dbSNP
rs933542241 2004 dbSNP
rs925583406 2007 dbSNP
rs1192745970 2014 dbSNP
rs935659671 2024 dbSNP
rs566615979 2025 dbSNP
rs1213261960 2028 dbSNP
rs1348713757 2031 dbSNP
rs528829830 2034 dbSNP
rs1052364784 2035 dbSNP
rs1208638935 2042 dbSNP
rs892042936 2065 dbSNP
rs1270090376 2068 dbSNP
rs1231715033 2069 dbSNP
rs1328649000 2077 dbSNP
rs1296899764 2085 dbSNP
rs187531434 2087 dbSNP
rs2479401 2095 dbSNP
rs546375922 2099 dbSNP
rs1434911244 2113 dbSNP
rs893504574 2120 dbSNP
rs192147639 2122 dbSNP
rs573567186 2136 dbSNP
rs868850197 2137 dbSNP
rs994169411 2138 dbSNP
rs906278893 2140 dbSNP
rs1259296971 2148 dbSNP
rs1456198862 2151 dbSNP
rs1190367956 2154 dbSNP
rs1295227407 2158 dbSNP
rs1026223899 2169 dbSNP
rs950634420 2187 dbSNP
rs74072615 2188 dbSNP
rs1025912146 2198 dbSNP
rs559115957 2201 dbSNP
rs528088448 2202 dbSNP
rs1016847740 2213 dbSNP
rs963405625 2214 dbSNP
rs1331786672 2218 dbSNP
rs1228684057 2220 dbSNP
rs1392667074 2227 dbSNP
rs975144740 2241 dbSNP
rs754737662 2242 dbSNP
rs1463962199 2243 dbSNP
rs921914969 2257 dbSNP
rs535715007 2261 dbSNP
rs987551018 2263 dbSNP
rs924138285 2278 dbSNP
rs1368177593 2281 dbSNP
rs935492063 2289 dbSNP
rs1053999164 2298 dbSNP
rs1439681854 2303 dbSNP
rs1267770546 2305 dbSNP
rs1238813585 2306 dbSNP
rs915491971 2310 dbSNP
rs1490641173 2311 dbSNP
rs1275587911 2314 dbSNP
rs556982092 2316 dbSNP
rs1229321335 2322 dbSNP
rs184320960 2323 dbSNP
rs113838702 2334 dbSNP
rs568795562 2335 dbSNP
rs1335868278 2336 dbSNP
rs906168675 2341 dbSNP
rs1444490139 2342 dbSNP
rs1396673026 2343 dbSNP
rs942864163 2348 dbSNP
rs1003721646 2351 dbSNP
rs1404588744 2352 dbSNP
rs776448632 2354 dbSNP
rs539055158 2362 dbSNP
rs77499761 2363 dbSNP
rs17111451 2372 dbSNP
rs1178173794 2382 dbSNP
rs1255488047 2383 dbSNP
rs963957366 2388 dbSNP
rs1222922459 2391 dbSNP
rs1385822390 2391 dbSNP
rs996740843 2393 dbSNP
rs1029428112 2394 dbSNP
rs751328104 2396 dbSNP
rs138842353 2397 dbSNP
rs1014099262 2399 dbSNP
rs1409898837 2401 dbSNP
rs1308057936 2403 dbSNP
rs750406741 2406 dbSNP
rs189785308 2411 dbSNP
rs1376446689 2415 dbSNP
rs1372494541 2416 dbSNP
rs924022301 2418 dbSNP
rs1275412133 2425 dbSNP
rs766429649 2428 dbSNP
rs1347931844 2438 dbSNP
rs1451816235 2440 dbSNP
rs956909464 2441 dbSNP
rs754975469 2442 dbSNP
rs989610731 2448 dbSNP
rs915376196 2455 dbSNP
rs1394672145 2456 dbSNP
rs1158245168 2459 dbSNP
rs141968688 2466 dbSNP
rs781230177 2476 dbSNP
rs1228373605 2482 dbSNP
rs1045295815 2488 dbSNP
rs1344415395 2493 dbSNP
rs180985962 2495 dbSNP
rs558786642 2508 dbSNP
rs1213973193 2512 dbSNP
rs939016763 2519 dbSNP
rs17111454 2522 dbSNP
rs1218579400 2526 dbSNP
rs1482378915 2536 dbSNP
rs374380858 2538 dbSNP
rs1271857352 2547 dbSNP
rs1400432489 2548 dbSNP
rs1339575687 2559 dbSNP
rs955625823 2561 dbSNP
rs886852954 2563 dbSNP
rs1360974070 2568 dbSNP
rs1005264419 2569 dbSNP
rs1038216722 2577 dbSNP
rs1183789469 2583 dbSNP
rs1423765493 2592 dbSNP
rs781656932 2594 dbSNP
rs1478378646 2599 dbSNP
rs1448632101 2603 dbSNP
rs866053616 2607 dbSNP
rs6677887 2619 dbSNP
rs1486409044 2626 dbSNP
rs1237684754 2632 dbSNP
rs1410051548 2638 dbSNP
rs1174683294 2640 dbSNP
rs997191963 2640 dbSNP
rs1038535117 2641 dbSNP
rs1357099292 2643 dbSNP
rs1317104137 2648 dbSNP
rs556774190 2649 dbSNP
rs756632645 2653 dbSNP
rs890489775 2654 dbSNP
rs1303639814 2658 dbSNP
rs1336954028 2659 dbSNP
rs930029629 2679 dbSNP
rs1047064776 2680 dbSNP
rs1008897765 2683 dbSNP
rs550320589 2683 dbSNP
rs35453110 2685 dbSNP
rs397863477 2685 dbSNP
rs201538032 2686 dbSNP
rs1476389738 2687 dbSNP
rs573481789 2688 dbSNP
rs905775249 2689 dbSNP
rs1030921717 2695 dbSNP
rs956795953 2696 dbSNP
rs184564785 2697 dbSNP
rs540363417 2699 dbSNP
rs957360921 2700 dbSNP
rs1009965153 2703 dbSNP
rs1022436676 2720 dbSNP
rs555961381 2721 dbSNP
rs867057951 2721 dbSNP
rs1464274654 2725 dbSNP
rs1206523364 2728 dbSNP
rs1400299710 2734 dbSNP
rs1329871580 2748 dbSNP
rs969564403 2752 dbSNP
rs981459192 2754 dbSNP
rs1350784022 2771 dbSNP
rs1475675112 2772 dbSNP
rs928230313 2774 dbSNP
rs939051160 2780 dbSNP
rs3737812 2789 dbSNP
rs1438533806 2790 dbSNP
rs1236323352 2791 dbSNP
rs1215455565 2798 dbSNP
rs1422505159 2804 dbSNP
rs544940377 2806 dbSNP
rs986456968 2812 dbSNP
rs1221116728 2813 dbSNP
rs1434381965 2814 dbSNP
rs908173358 2815 dbSNP
rs564848248 2827 dbSNP
rs575373898 2839 dbSNP
rs1387382449 2842 dbSNP
rs779477915 2844 dbSNP
rs1388991976 2851 dbSNP
rs964289876 2853 dbSNP
rs746638992 2856 dbSNP
rs1293247019 2858 dbSNP
rs974655729 2862 dbSNP
rs1158841747 2863 dbSNP
rs1418611664 2874 dbSNP
rs932495211 2877 dbSNP
rs1347292661 2881 dbSNP
rs1432176485 2884 dbSNP
rs78219256 2886 dbSNP
rs1365666605 2889 dbSNP
rs139786638 2893 dbSNP
rs1266422676 2897 dbSNP
rs891048091 2898 dbSNP
rs1220950443 2909 dbSNP
rs1288486266 2915 dbSNP
rs998696108 2920 dbSNP
rs930082073 2932 dbSNP
rs1283895788 2938 dbSNP
rs1030974306 2941 dbSNP
rs892444593 2943 dbSNP
rs1313359873 2951 dbSNP
rs1301185429 2959 dbSNP
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rs907405364 6414 dbSNP
rs1306800136 6419 dbSNP
rs1334340406 6420 dbSNP
rs929458374 6443 dbSNP
rs1047855057 6450 dbSNP
rs1241896535 6451 dbSNP
rs148785846 6457 dbSNP
rs1331085156 6460 dbSNP
rs189253314 6461 dbSNP
rs1220281161 6465 dbSNP
rs1039131436 6469 dbSNP
rs541329359 6470 dbSNP
rs1158871503 6471 dbSNP
rs1455375948 6474 dbSNP
rs1430935727 6477 dbSNP
rs552103453 6482 dbSNP
rs1488950822 6485 dbSNP
rs1172701121 6492 dbSNP
rs1477378326 6496 dbSNP
rs1375885433 6507 dbSNP
rs1195418283 6517 dbSNP
rs1030028231 6523 dbSNP
rs1248221074 6524 dbSNP
rs1420647630 6529 dbSNP
rs1179185263 6531 dbSNP
rs1206588504 6532 dbSNP
rs993716822 6533 dbSNP
rs1036255913 6535 dbSNP
rs571938940 6538 dbSNP
rs1344350325 6545 dbSNP
rs1013437502 6546 dbSNP
rs1442273879 6557 dbSNP
rs999767207 6563 dbSNP
rs537455776 6567 dbSNP
rs958208080 6571 dbSNP
rs968713265 6572 dbSNP
rs557428423 6576 dbSNP
rs1032299050 6580 dbSNP
rs1296092693 6587 dbSNP
rs956825471 6595 dbSNP
rs567645778 6596 dbSNP
rs80355168 6600 dbSNP
rs1450084129 6607 dbSNP
rs933143752 6607 dbSNP
rs986295158 6612 dbSNP
rs1186496973 6614 dbSNP
rs1393446769 6629 dbSNP
rs1239463597 6636 dbSNP
rs538902384 6641 dbSNP
rs981564340 6649 dbSNP
rs910264653 6653 dbSNP
rs941740925 6654 dbSNP
rs1298958716 6659 dbSNP
rs1207341084 6664 dbSNP
rs928708395 6665 dbSNP
rs1297446258 6671 dbSNP
rs929343340 6681 dbSNP
rs1048376886 6686 dbSNP
rs1244377533 6687 dbSNP
rs1446913946 6695 dbSNP
rs1357070190 6698 dbSNP
rs909361273 6702 dbSNP
rs1166598445 6712 dbSNP
rs942301796 6712 dbSNP
rs1426323605 6714 dbSNP
rs1322389579 6723 dbSNP
rs143687454 6734 dbSNP
rs770080723 6735 dbSNP
rs1227050989 6737 dbSNP
rs1472613461 6738 dbSNP
rs553425047 6744 dbSNP
rs1184461148 6745 dbSNP
rs1481500631 6751 dbSNP
rs1198997398 6759 dbSNP
rs1242270816 6765 dbSNP
rs1459964959 6770 dbSNP
rs900209303 6776 dbSNP
rs1274556553 6794 dbSNP
rs895986796 6800 dbSNP
rs1324013104 6803 dbSNP
rs2864123 6804 dbSNP
rs1228077655 6809 dbSNP
rs1413976266 6812 dbSNP
rs1427342662 6814 dbSNP
rs2149037 6816 dbSNP
rs902278834 6823 dbSNP
rs999254280 6826 dbSNP
rs1306123979 6827 dbSNP
rs904604990 6832 dbSNP
rs1374382818 6833 dbSNP
rs1163867456 6841 dbSNP
rs1403337806 6843 dbSNP
rs1415996414 6850 dbSNP
rs1467544207 6851 dbSNP
rs1000230833 6854 dbSNP
rs1031662684 6856 dbSNP
rs956670408 6857 dbSNP
rs1032607761 6860 dbSNP
rs1180104084 6861 dbSNP
rs1451173394 6870 dbSNP
rs1489778537 6871 dbSNP
rs147509270 6872 dbSNP
rs957884153 6878 dbSNP
rs774827457 6880 dbSNP
rs1221325340 6881 dbSNP
rs1023555340 6891 dbSNP
rs760137091 6892 dbSNP
rs542608964 6893 dbSNP
rs577481837 6905 dbSNP
rs985925563 6907 dbSNP
rs115701215 6908 dbSNP
rs1387982361 6909 dbSNP
rs928592459 6910 dbSNP
rs963086427 6914 dbSNP
rs562990658 6918 dbSNP
rs763478730 6924 dbSNP
rs983538906 6925 dbSNP
rs1390490529 6927 dbSNP
rs918936682 6944 dbSNP
rs1411472783 6959 dbSNP
rs1157076701 6961 dbSNP
rs909397900 6961 dbSNP
rs181618299 6966 dbSNP
rs1191059967 6968 dbSNP
rs942201904 6976 dbSNP
rs1487719298 6978 dbSNP
rs1039731840 6979 dbSNP
rs1209714000 6981 dbSNP
rs1464195767 6984 dbSNP
rs542366158 6985 dbSNP
rs917467735 6989 dbSNP
rs1300519975 6994 dbSNP
rs1485269847 7002 dbSNP
rs753419886 7006 dbSNP
rs1044574751 7010 dbSNP
rs933540057 7015 dbSNP
rs1263186497 7018 dbSNP
rs1388209511 7027 dbSNP
rs1051389818 7040 dbSNP
rs902164057 7043 dbSNP
rs1000260386 7052 dbSNP
rs935099430 7058 dbSNP
rs1175439158 7059 dbSNP
rs1453190891 7061 dbSNP
rs554976689 7061 dbSNP
rs1429113578 7062 dbSNP
rs1259235171 7063 dbSNP
rs891802561 7066 dbSNP
rs1053533340 7067 dbSNP
rs1483365291 7069 dbSNP
rs1254971155 7075 dbSNP
rs893670263 7078 dbSNP
rs139587723 7080 dbSNP
rs1360201911 7093 dbSNP
rs998161653 7096 dbSNP
rs1227434971 7104 dbSNP
rs761322956 7106 dbSNP
rs1030704717 7109 dbSNP
rs1293726113 7110 dbSNP
rs1342435945 7111 dbSNP
rs1398070594 7116 dbSNP
rs1380162447 7120 dbSNP
rs1400909308 7126 dbSNP
rs954643367 7129 dbSNP
rs1007378610 7132 dbSNP
rs576445606 7135 dbSNP
rs1017375051 7136 dbSNP
rs1429525326 7143 dbSNP
rs1371760791 7146 dbSNP
rs1190043692 7147 dbSNP
rs963158993 7156 dbSNP
rs760338596 7157 dbSNP
rs1185192667 7161 dbSNP
rs1225063784 7164 dbSNP
rs1483727428 7185 dbSNP
rs906464188 7188 dbSNP
rs1003440451 7189 dbSNP
rs1035719774 7191 dbSNP
rs950736462 7192 dbSNP
rs983974497 7196 dbSNP
rs750172523 7201 dbSNP
rs1488330679 7204 dbSNP
rs1198246005 7205 dbSNP
rs1322573885 7207 dbSNP
rs1266256017 7208 dbSNP
rs1479674549 7209 dbSNP
rs1193244825 7216 dbSNP
rs551968243 7217 dbSNP
rs963751759 7218 dbSNP
rs1394928179 7224 dbSNP
rs1165410633 7240 dbSNP
rs1157548577 7242 dbSNP
rs1044605841 7244 dbSNP
rs974887969 7245 dbSNP
rs1162264856 7249 dbSNP
rs145115310 7252 dbSNP
rs772933646 7252 dbSNP
rs1180825893 7260 dbSNP
rs114160959 7261 dbSNP
rs987664272 7267 dbSNP
rs551295803 7269 dbSNP
rs998630272 7270 dbSNP
rs142722526 7300 dbSNP
rs758261147 7304 dbSNP
rs761722933 7305 dbSNP
rs890394886 7310 dbSNP
rs923636846 7314 dbSNP
rs935010733 7315 dbSNP
rs1372333390 7320 dbSNP
rs116204642 7334 dbSNP
rs751423678 7335 dbSNP
rs1387716025 7337 dbSNP
rs1308979838 7348 dbSNP
rs754976216 7349 dbSNP
rs1324293448 7352 dbSNP
rs1458554110 7356 dbSNP
rs1412215656 7357 dbSNP
rs1157842709 7369 dbSNP
rs1468118424 7371 dbSNP
rs79116528 7383 dbSNP
rs543913584 7384 dbSNP
rs1450947008 7385 dbSNP
rs566930778 7388 dbSNP
rs1289184209 7395 dbSNP
rs2495507 7400 dbSNP
rs1003492951 7403 dbSNP
rs1466458363 7403 dbSNP
rs994591260 7406 dbSNP
rs1348548299 7407 dbSNP
rs1277134523 7416 dbSNP
rs557565547 7419 dbSNP
rs950488534 7420 dbSNP
rs1370907891 7431 dbSNP
rs1287662258 7433 dbSNP
rs187039052 7438 dbSNP
rs536988554 7439 dbSNP
rs189841208 7441 dbSNP
rs573558043 7443 dbSNP
rs980360879 7444 dbSNP
rs1403788043 7446 dbSNP
rs2479397 7448 dbSNP
rs963506540 7463 dbSNP
rs1477679591 7468 dbSNP
rs2495506 7469 dbSNP
rs1190298124 7491 dbSNP
rs1383442365 7492 dbSNP
rs1248888698 7503 dbSNP
rs1192671925 7507 dbSNP
rs988987533 7509 dbSNP
rs767583851 7515 dbSNP
rs147579524 7521 dbSNP
rs1407354979 7524 dbSNP
rs913337570 7525 dbSNP
rs753133837 7531 dbSNP
rs17111479 7532 dbSNP
rs1333310297 7536 dbSNP
rs1377501784 7537 dbSNP
rs1366303211 7538 dbSNP
rs987723006 7540 dbSNP
rs924219543 7542 dbSNP
rs935548994 7543 dbSNP
rs989176203 7553 dbSNP
rs1341859769 7554 dbSNP
rs914869653 7558 dbSNP
rs947811234 7562 dbSNP
rs1228538268 7578 dbSNP
rs1044825484 7583 dbSNP
rs1430184398 7587 dbSNP
rs927818561 7587 dbSNP
rs1026134240 7588 dbSNP
rs771262825 7588 dbSNP
rs886211133 7588 dbSNP
rs994663026 7588 dbSNP
rs111754121 7606 dbSNP
rs140490167 7606 dbSNP
rs1485364850 7609 dbSNP
rs1256037112 7618 dbSNP
rs1047293721 7619 dbSNP
rs1343489180 7619 dbSNP
rs565528274 7620 dbSNP
rs979724043 7629 dbSNP
rs1358052411 7639 dbSNP
rs1202814232 7644 dbSNP
rs1413636530 7645 dbSNP
rs1352957378 7649 dbSNP
rs774817437 7654 dbSNP
rs1033297674 7656 dbSNP
rs139474267 7669 dbSNP
rs1410431346 7676 dbSNP
rs1353828379 7683 dbSNP
rs1406834192 7688 dbSNP
rs1240376743 7697 dbSNP
rs1416274830 7698 dbSNP
rs1458641033 7700 dbSNP
rs1474993337 7704 dbSNP
rs879090117 7712 dbSNP
rs1184395969 7716 dbSNP
rs1005851923 7719 dbSNP
rs1232757468 7720 dbSNP
rs1037724655 7721 dbSNP
rs899142513 7724 dbSNP
rs1383543913 7725 dbSNP
rs1202901096 7759 dbSNP
rs989410970 7765 dbSNP
rs996244823 7767 dbSNP
rs1290167745 7771 dbSNP
rs374257375 7775 dbSNP
rs1029031720 7776 dbSNP
rs954754161 7783 dbSNP
rs1232362585 7790 dbSNP
rs386631348 7790 dbSNP
rs2479396 7791 dbSNP
rs181389348 7793 dbSNP
rs1228452094 7816 dbSNP
rs1372555343 7824 dbSNP
rs1296344142 7825 dbSNP
rs1438357047 7826 dbSNP
rs1350308113 7827 dbSNP
rs1324962856 7831 dbSNP
rs530063827 7850 dbSNP
rs956997391 7851 dbSNP
rs990123079 7866 dbSNP
rs911268338 7867 dbSNP
rs186344567 7871 dbSNP
rs1407897087 7876 dbSNP
rs772655488 7884 dbSNP
rs969037926 7898 dbSNP
rs1038324674 7900 dbSNP
rs116514630 7901 dbSNP
rs1213426807 7903 dbSNP
rs1466900944 7906 dbSNP
rs1269577573 7912 dbSNP
rs927699138 7929 dbSNP
rs1208848404 7933 dbSNP
rs1315744046 7938 dbSNP
rs939046991 7943 dbSNP
rs1304209846 7954 dbSNP
rs1220940034 7956 dbSNP
rs1046904649 7957 dbSNP
rs751410289 7959 dbSNP
rs766102678 7959 dbSNP
rs1392591732 7963 dbSNP
rs535238591 7971 dbSNP
rs1341754769 7972 dbSNP
rs527631907 7974 dbSNP
rs71048724 7974 dbSNP
rs144437507 7976 dbSNP
rs1452920407 7976 dbSNP
rs146873527 7977 dbSNP
rs1448058661 7978 dbSNP
rs386366992 7984 dbSNP
rs372894420 7988 dbSNP
rs377131964 7989 dbSNP
rs370810730 7992 dbSNP
rs375035161 7993 dbSNP
rs368353996 7994 dbSNP
rs908347325 7995 dbSNP
rs1312723025 7996 dbSNP
rs1279471114 7997 dbSNP
rs538793426 8001 dbSNP
rs754457542 8002 dbSNP
rs886285334 8007 dbSNP
rs1367020711 8008 dbSNP
rs941310696 8009 dbSNP
rs1383054844 8016 dbSNP
rs1361494398 8037 dbSNP
rs1038678628 8041 dbSNP
rs1220060194 8046 dbSNP
rs1260462342 8060 dbSNP
rs1376628819 8077 dbSNP
rs1173493383 8083 dbSNP
rs1319035859 8084 dbSNP
rs1203592541 8086 dbSNP
rs1014467837 8090 dbSNP
rs1444223703 8091 dbSNP
rs899206453 8097 dbSNP
rs1259167252 8102 dbSNP
rs1241563180 8106 dbSNP
rs1183126200 8112 dbSNP
rs996136567 8113 dbSNP
rs1485673392 8124 dbSNP
rs905607717 8125 dbSNP
rs1208712086 8128 dbSNP
rs1344223416 8132 dbSNP
rs1050353601 8138 dbSNP
rs1226393442 8138 dbSNP
rs1307158634 8154 dbSNP
rs112073522 8160 dbSNP
rs1032662156 8171 dbSNP
rs548976530 8178 dbSNP
rs1424077090 8182 dbSNP
rs369550458 8185 dbSNP
rs190012718 8186 dbSNP
rs1404210569 8190 dbSNP
rs1414937637 8191 dbSNP
rs149654666 8192 dbSNP
rs1461760726 8193 dbSNP
rs1022968916 8201 dbSNP
rs1370987326 8222 dbSNP
rs987372833 8235 dbSNP
rs567286752 8238 dbSNP
rs1185118766 8250 dbSNP
rs974067907 8261 dbSNP
rs1401539879 8262 dbSNP
rs1195043462 8263 dbSNP
rs919945740 8271 dbSNP
rs929935331 8281 dbSNP
rs145636017 8283 dbSNP
rs1335678252 8284 dbSNP
rs1341540598 8286 dbSNP
rs907743544 8288 dbSNP
rs1223230542 8289 dbSNP
rs1254798230 8291 dbSNP
rs949952668 8303 dbSNP
rs536137235 8308 dbSNP
rs868661834 8312 dbSNP
rs1391189445 8322 dbSNP
rs1394855977 8325 dbSNP
rs1201505862 8326 dbSNP
rs1045578804 8327 dbSNP
rs552959069 8338 dbSNP
rs1461677492 8348 dbSNP
rs1393252090 8351 dbSNP
rs927584444 8366 dbSNP
rs531279678 8374 dbSNP
rs1283733739 8381 dbSNP
rs1487311026 8382 dbSNP
rs374044629 8387 dbSNP
rs960461627 8388 dbSNP
rs1180929407 8396 dbSNP
rs1417226759 8405 dbSNP
rs1196130606 8414 dbSNP
rs762737598 8418 dbSNP
rs1264109315 8434 dbSNP
rs908398999 8438 dbSNP
rs1197057948 8445 dbSNP
rs1214065479 8447 dbSNP
rs941182787 8448 dbSNP
rs1272733598 8454 dbSNP
rs1211902794 8458 dbSNP
rs973894700 8461 dbSNP
rs1379126787 8462 dbSNP
rs1280196537 8463 dbSNP
rs1239044217 8464 dbSNP
rs921188396 8468 dbSNP
rs1001305333 8469 dbSNP
rs1442038067 8470 dbSNP
rs932541843 8471 dbSNP
rs1050405724 8479 dbSNP
rs182242311 8491 dbSNP
rs564662961 8492 dbSNP
rs1458374567 8497 dbSNP
rs944840402 8499 dbSNP
rs892810835 8502 dbSNP
rs1420928006 8505 dbSNP
rs1010278741 8518 dbSNP
rs545167572 8528 dbSNP
rs1364526113 8531 dbSNP
rs148901107 8532 dbSNP
rs745317144 8541 dbSNP
rs1333179193 8542 dbSNP
rs115554268 8544 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124B_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gacacACUCCUUGUUCUCUGUu 5'
               ||: ||: :||||||| 
Target 5' -----UGGAGAGAGAGAGACAg 3'
1 - 17
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084079. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gacacACUCCUUGUUCUCUGuu 5'
               ||: ||: :||||||  
Target 5' ---gaUGGAGAGAGAGAGAC-- 3'
1 - 17
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset Chi_124B_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + B
Location of target site ENST00000371265.4 | 3UTR | UGGAGAGAGAGAGACAGAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084079
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_AbnovaAb
Location of target site ENST00000371265.4 | 3UTR | GAUGGAGAGAGAGAGAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
150 hsa-miR-6818-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT112122 TIMM17A translocase of inner mitochondrial membrane 17A 2 6
MIRT262243 BAMBI BMP and activin membrane bound inhibitor 2 2
MIRT446689 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT449923 TPST2 tyrosylprotein sulfotransferase 2 2 2
MIRT464356 USP12P1 ubiquitin specific peptidase 12 pseudogene 1 2 2
MIRT485703 CBX7 chromobox 7 2 2
MIRT497478 XPR1 xenotropic and polytropic retrovirus receptor 1 2 4
MIRT499435 ODF2L outer dense fiber of sperm tails 2 like 2 8
MIRT514246 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT515032 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT515065 PLA2G2C phospholipase A2 group IIC 2 2
MIRT520235 USP9X ubiquitin specific peptidase 9, X-linked 2 4
MIRT523685 FHL2 four and a half LIM domains 2 2 4
MIRT525524 FSIP2 fibrous sheath interacting protein 2 2 2
MIRT525838 FAR2 fatty acyl-CoA reductase 2 2 2
MIRT528583 PTGER3 prostaglandin E receptor 3 2 2
MIRT530404 SULT1B1 sulfotransferase family 1B member 1 2 2
MIRT530703 RNMTL1 mitochondrial rRNA methyltransferase 3 2 2
MIRT535118 PLSCR4 phospholipid scramblase 4 2 2
MIRT539880 IRGQ immunity related GTPase Q 2 2
MIRT540195 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT540938 SLC25A43 solute carrier family 25 member 43 2 2
MIRT541501 TOR1AIP1 torsin 1A interacting protein 1 2 2
MIRT542544 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT542559 ZNF280B zinc finger protein 280B 2 2
MIRT542689 RPS15A ribosomal protein S15a 2 2
MIRT548759 CNNM3 cyclin and CBS domain divalent metal cation transport mediator 3 2 2
MIRT549735 MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5 2 2
MIRT553060 ULK1 unc-51 like autophagy activating kinase 1 2 2
MIRT556303 MAP2K4 mitogen-activated protein kinase kinase 4 2 2
MIRT560816 DIP2A disco interacting protein 2 homolog A 2 2
MIRT567455 GLTSCR1 BRD4 interacting chromatin remodeling complex associated protein 2 2
MIRT575143 Cd93 CD93 antigen 2 2
MIRT607217 ACSM2A acyl-CoA synthetase medium chain family member 2A 2 4
MIRT607286 CD300E CD300e molecule 2 6
MIRT607302 RREB1 ras responsive element binding protein 1 2 6
MIRT608645 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT611095 MYO1F myosin IF 2 4
MIRT611576 CLEC4D C-type lectin domain family 4 member D 2 2
MIRT614271 WSCD2 WSC domain containing 2 2 2
MIRT614855 PLEKHA6 pleckstrin homology domain containing A6 2 2
MIRT617114 KANK2 KN motif and ankyrin repeat domains 2 2 2
MIRT618002 SLC9A3R2 SLC9A3 regulator 2 2 2
MIRT618028 CTU1 cytosolic thiouridylase subunit 1 2 2
MIRT619062 BSND barttin CLCNK type accessory beta subunit 2 4
MIRT619289 FAM26E calcium homeostasis modulator family member 5 2 2
MIRT619356 CFHR5 complement factor H related 5 2 2
MIRT620725 CCL16 C-C motif chemokine ligand 16 2 2
MIRT620913 LRRTM2 leucine rich repeat transmembrane neuronal 2 2 2
MIRT621902 TAB1 TGF-beta activated kinase 1 (MAP3K7) binding protein 1 2 2
MIRT622025 STAT5A signal transducer and activator of transcription 5A 2 2
MIRT622556 PTPN3 protein tyrosine phosphatase, non-receptor type 3 2 2
MIRT623137 NCKAP1 NCK associated protein 1 2 2
MIRT623140 NAV2 neuron navigator 2 2 2
MIRT623701 HHAT hedgehog acyltransferase 2 2
MIRT624602 B3GALT5 beta-1,3-galactosyltransferase 5 2 2
MIRT625944 OLIG3 oligodendrocyte transcription factor 3 2 2
MIRT625988 SPATA17 spermatogenesis associated 17 2 2
MIRT628028 LSAMP limbic system-associated membrane protein 2 2
MIRT635521 MC2R melanocortin 2 receptor 2 2
MIRT638916 CALCOCO2 calcium binding and coiled-coil domain 2 2 2
MIRT639796 EPX eosinophil peroxidase 2 2
MIRT640344 C1orf210 chromosome 1 open reading frame 210 2 2
MIRT644806 VLDLR very low density lipoprotein receptor 2 2
MIRT645303 AGTRAP angiotensin II receptor associated protein 2 2
MIRT645629 SYTL4 synaptotagmin like 4 2 2
MIRT645683 TBC1D13 TBC1 domain family member 13 2 2
MIRT646216 DUSP10 dual specificity phosphatase 10 2 2
MIRT648505 PIGG phosphatidylinositol glycan anchor biosynthesis class G 2 2
MIRT649748 UTP20 UTP20, small subunit processome component 2 2
MIRT649797 CLEC2D C-type lectin domain family 2 member D 2 2
MIRT650482 UFM1 ubiquitin fold modifier 1 2 2
MIRT653199 SP9 Sp9 transcription factor 2 2
MIRT655741 NR2F2 nuclear receptor subfamily 2 group F member 2 2 2
MIRT659978 C2CD2L C2CD2 like 2 2
MIRT660350 BAG4 BCL2 associated athanogene 4 2 2
MIRT662185 MEI1 meiotic double-stranded break formation protein 1 2 2
MIRT663290 TECPR2 tectonin beta-propeller repeat containing 2 2 2
MIRT666817 PRCP prolylcarboxypeptidase 2 2
MIRT671665 HEYL hes related family bHLH transcription factor with YRPW motif-like 2 2
MIRT671838 PDE3A phosphodiesterase 3A 2 2
MIRT672193 F2 coagulation factor II, thrombin 2 2
MIRT673870 KLF2 Kruppel like factor 2 2 2
MIRT683563 CARD8 caspase recruitment domain family member 8 2 2
MIRT684545 ZNF708 zinc finger protein 708 2 2
MIRT685140 TACR3 tachykinin receptor 3 2 2
MIRT685413 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT686039 SLC5A5 solute carrier family 5 member 5 2 2
MIRT686126 B4GALT7 beta-1,4-galactosyltransferase 7 2 2
MIRT687473 NHLRC2 NHL repeat containing 2 2 2
MIRT687946 HHIP hedgehog interacting protein 2 2
MIRT688171 FRRS1 ferric chelate reductase 1 2 2
MIRT688295 FAM208A family with sequence similarity 208 member A 2 2
MIRT689044 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT689194 ZNF574 zinc finger protein 574 2 2
MIRT691253 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT695358 PHAX phosphorylated adaptor for RNA export 2 2
MIRT696674 APOC3 apolipoprotein C3 2 2
MIRT697358 ZNF394 zinc finger protein 394 2 2
MIRT697604 XIAP X-linked inhibitor of apoptosis 2 2
MIRT697726 USP6NL USP6 N-terminal like 2 2
MIRT697776 UBXN7 UBX domain protein 7 2 2
MIRT698478 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT698984 SPAG9 sperm associated antigen 9 2 2
MIRT699851 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT700172 RIMKLB ribosomal modification protein rimK like family member B 2 2
MIRT704339 DCAF16 DDB1 and CUL4 associated factor 16 2 2
MIRT704589 CLN8 CLN8, transmembrane ER and ERGIC protein 2 2
MIRT705836 AHCY adenosylhomocysteinase 2 2
MIRT707085 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT707132 TRA2B transformer 2 beta homolog 2 2
MIRT707145 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT707234 H6PD hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase 2 2
MIRT707347 XPNPEP3 X-prolyl aminopeptidase 3 2 2
MIRT707445 PPFIBP1 PPFIA binding protein 1 2 2
MIRT707494 AXL AXL receptor tyrosine kinase 2 2
MIRT707638 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT707690 FAM118A family with sequence similarity 118 member A 2 2
MIRT707706 CDC6 cell division cycle 6 2 2
MIRT707817 TMEM170A transmembrane protein 170A 2 2
MIRT707957 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT707996 NUDT4 nudix hydrolase 4 2 2
MIRT708026 MRPS14 mitochondrial ribosomal protein S14 2 2
MIRT708058 LIX1L limb and CNS expressed 1 like