pre-miRNA Information
pre-miRNA hsa-mir-4793   
Genomic Coordinates chr3: 48644194 - 48644280
Description Homo sapiens miR-4793 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4793-3p
Sequence 58| UCUGCACUGUGAGUUGGCUGGCU |80
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5899925 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs779602935 6 dbSNP
rs757908486 7 dbSNP
rs1422853760 15 dbSNP
rs377721296 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ATAT1   
Synonyms C6orf134, MEC17, Nbla00487, TAT, alpha-TAT, alpha-TAT1
Description alpha tubulin acetyltransferase 1
Transcript NM_001190724   
Other Transcripts NM_001031722 , NM_024909   
Expression
Putative miRNA Targets on ATAT1
3'UTR of ATAT1
(miRNA target sites are highlighted)
>ATAT1|NM_001190724|3'UTR
   1 TAGGAGTTGAAGGGCTAAGGAGCCTCACAGCTATAAAAGAGGATGTTAGAAATGGCAAAGGGCAATTTGAATCCATCAGA
  81 GAGATGGATCAATAAGATGGGTGGCTTGGGGGGGGTCCTGAAACCTTTCAAGAAAAATATTTGTGCAAGTGATCTGGGAA
 161 AAAAATGCAGTGAAGGAGCAGAATAGGACCTTATATGGAGCCTAGGGACCCTGGCTTTAATGTGAGAGTTATGTGGAATG
 241 GTAGGAAGAACACCGAGATCCATCGAGTTGGGGGAACAGAGCCTTCTAAGATTGGGAAAATCTTCGCTTAATACTTGCTG
 321 GGGAAGGGGCAGTGTCTGACAGAGAGTGGGAAGCCACTGGCTTGTGTGCCAAGAGTCCATCGCAGCAGGCAGGGAGTGGG
 401 CATTTCCTTTATTTCTCTCCCTTTCTCTTCACCTCTGACTTCTCTGTTTTTCTCTCCCCCGCCCCCCGCCATTTCCCATC
 481 TCCCTTCCTCCCATCCATAACATCCTTCCACAGCTCCCTTCCCCGCTCTGAGGAGAGTCGATACTAACAGCTACCCTCTC
 561 CCTGCCCTGGGAGACCTGGGGTGGGCAGGGAACCCCTCCCTGAGAACCTCAGACCCACTCTTCCATTGCATCCTGTAGGA
 641 CCCAGTGGAACCTGACAGAGCCCATAGGATTCCCTCTTCTACTTTCTTAGACAGCAGGGATGTCAGGGTCTCAAACTGCC
 721 TAACACTTTGTAGCTTTTCTTAACACAAAAGCACCCCTTCTCTCCTAACTTGGGCTCTGAATACTTTCCCAACAGGAAGT
 801 CTGATCTGTTGCCAGACTTCTTGGTTAGATGGCTCATACATTTATCTAGAGAAGCACACTCTTGCTTGCTGTCAAACTTT
 881 AGACCACCATGGAAGGTCTAAGGGCATCCTGTGCCAGGGAAACTTTTTAAGGAATTTTATCTATGGGATAAACCCCATAT
 961 TCCCTCTAGTGTCTACTGGTGGCTCTAATACTGCTTTGTGCTGCCTGCCACACTTGCCCTTTGAGCCTGCGAATGGCCGC
1041 TAGTGAGCAAGCTCTGCTTCAGAGCAGTCTAGTTAGGTAGAACAGGGACTTACCAGCTTCCCAAAGGGATCTACTCACCA
1121 TTGCCAAACTCTTCATTTCCACATTTTGTGTAGGTGTCAGGGAACCCCAAACTGGTGTTGCTTTGGGGTCTCTAAAGGAG
1201 ATTGGCTGACACCACCATTTCCCCCAGATCCAGATTCTCTGAGGGAGGTTGTTTCTTGAGAGTAGATCCAGAGTGTCAAG
1281 GATCTGTTAGATCCTGGAATCCCTTCTTGCATCCATCCCTCCCTGGTAGCTAGGTCCCGATATACTCCTGTCTTGTGAGA
1361 TTGTCGAGATGAGATGGGGGACCACTCTTCCTCTGTCCTTCCTCTCTCCTTTCCTCCATAGCAAGGACGACCTTCCCTGC
1441 TCCATGCCCAGAGTATAGCTAGATCCCTTCCCCTCCCTACCCTCTGAATGTGTGCTAGATCAGGTGCCCCACTGTGTTTC
1521 CTGAAATCCTTGGGAGCCGGATCTCCCCATCTCCCCTACTCACTCTTCCCTTTTCTTCTCTCAGTGTTGTCTGAATAAAG
1601 TGTGAAATCTTTTGTGTTTTCTAAATTGACATTTTCAATGAAAAAAAGAATCACAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucggUCGGUUGAG----UGUCACGUCu 5'
              ||| |:|||     ||| |||| 
Target 5' agtgAGCAAGCTCTGCTTCAGAGCAGt 3'
1042 - 1068 129.00 -18.80
2
miRNA  3' ucggucggUUGAGUGUCACGUCu 5'
                  ||  ::||||| || 
Target 5' ctgggaaaAAAATGCAGTGAAGg 3'
154 - 176 119.00 -9.30
3
miRNA  3' ucGGUC-GGUUGAG--UGUCACGUcu 5'
            :||| || ||||   || ||||  
Target 5' ccTCAGACCCACTCTTCCATTGCAtc 3'
607 - 632 115.00 -12.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN22421902 80 COSMIC
COSN30522874 106 COSMIC
COSN31490991 155 COSMIC
COSN30511112 158 COSMIC
COSN31520980 265 COSMIC
COSN31597136 382 COSMIC
COSN31606721 416 COSMIC
COSN31490871 418 COSMIC
COSN7870242 469 COSMIC
COSM8897866 507 COSMIC
COSM3662353 540 COSMIC
COSM9229677 541 COSMIC
COSN31489446 591 COSMIC
COSN31536919 630 COSMIC
COSN24394262 659 COSMIC
COSN30127858 668 COSMIC
COSN7870243 668 COSMIC
COSN31521894 776 COSMIC
COSN20075633 849 COSMIC
COSN2159286 898 COSMIC
COSN23172062 921 COSMIC
COSN31544075 1031 COSMIC
COSN31571171 1286 COSMIC
COSN31608018 1366 COSMIC
COSN2159287 1448 COSMIC
COSN31538728 1523 COSMIC
COSN31481764 1583 COSMIC
COSN20091360 1605 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1438669735 4 dbSNP
rs1304898032 5 dbSNP
rs1040299401 7 dbSNP
rs187960742 8 dbSNP
rs372112826 9 dbSNP
rs756129145 10 dbSNP
rs760728258 13 dbSNP
rs1306449050 18 dbSNP
rs771033765 24 dbSNP
rs1377475238 25 dbSNP
rs776688505 29 dbSNP
rs374543544 31 dbSNP
rs764649613 34 dbSNP
rs1213767311 39 dbSNP
rs1236971457 53 dbSNP
rs887318381 61 dbSNP
rs1401199968 74 dbSNP
rs1172999210 80 dbSNP
rs1435560588 88 dbSNP
rs531089990 97 dbSNP
rs796689061 101 dbSNP
rs1156861879 103 dbSNP
rs1012296457 107 dbSNP
rs1024662661 108 dbSNP
rs3214092 108 dbSNP
rs374967887 108 dbSNP
rs1441238675 109 dbSNP
rs3214091 109 dbSNP
rs551204992 110 dbSNP
rs192790586 111 dbSNP
rs1258828963 114 dbSNP
rs570008376 115 dbSNP
rs1002277003 116 dbSNP
rs1252051558 121 dbSNP
rs1339867983 133 dbSNP
rs1452160819 138 dbSNP
rs914609498 141 dbSNP
rs1178472431 142 dbSNP
rs932767194 144 dbSNP
rs1408117629 159 dbSNP
rs1408777898 160 dbSNP
rs1034178466 179 dbSNP
rs1160426557 183 dbSNP
rs1472093426 184 dbSNP
rs1368404336 185 dbSNP
rs1189025925 189 dbSNP
rs557013004 209 dbSNP
rs1260541549 211 dbSNP
rs912549383 215 dbSNP
rs117340770 222 dbSNP
rs1285736229 227 dbSNP
rs1036905396 233 dbSNP
rs1293849369 234 dbSNP
rs143100203 235 dbSNP
rs1387006256 249 dbSNP
rs1234858609 255 dbSNP
rs1020164026 256 dbSNP
rs1338109106 258 dbSNP
rs1277381644 261 dbSNP
rs538996795 263 dbSNP
rs1430259865 265 dbSNP
rs3094103 266 dbSNP
rs1320295510 268 dbSNP
rs1403690581 272 dbSNP
rs117542244 273 dbSNP
rs1434548462 275 dbSNP
rs1476497254 277 dbSNP
rs1421911626 279 dbSNP
rs537746687 283 dbSNP
rs942473276 288 dbSNP
rs975182806 297 dbSNP
rs1374159477 301 dbSNP
rs1223222247 306 dbSNP
rs920130370 307 dbSNP
rs762862570 319 dbSNP
rs1286449539 329 dbSNP
rs1273310355 341 dbSNP
rs931472269 341 dbSNP
rs1047228318 347 dbSNP
rs1233724613 351 dbSNP
rs887372054 358 dbSNP
rs1444380129 365 dbSNP
rs1011979923 371 dbSNP
rs1466939801 373 dbSNP
rs1025173728 376 dbSNP
rs970374731 378 dbSNP
rs1214946867 379 dbSNP
rs1285698475 382 dbSNP
rs1362852086 383 dbSNP
rs949639670 384 dbSNP
rs116918452 387 dbSNP
rs1434347877 401 dbSNP
rs1370299551 402 dbSNP
rs1031889967 408 dbSNP
rs1463465889 409 dbSNP
rs1480029403 429 dbSNP
rs905181424 433 dbSNP
rs1398830035 436 dbSNP
rs1170110634 440 dbSNP
rs775111547 441 dbSNP
rs1348912096 444 dbSNP
rs1410476947 445 dbSNP
rs956284993 445 dbSNP
rs1477518945 452 dbSNP
rs1253064455 453 dbSNP
rs1002737414 458 dbSNP
rs375402383 461 dbSNP
rs1204896650 462 dbSNP
rs182511398 463 dbSNP
rs1437754763 467 dbSNP
rs914766350 468 dbSNP
rs985552519 469 dbSNP
rs553417737 478 dbSNP
rs893856516 483 dbSNP
rs1472332372 491 dbSNP
rs1162931797 492 dbSNP
rs1388848199 495 dbSNP
rs762455395 498 dbSNP
rs1298131672 500 dbSNP
rs1443608097 504 dbSNP
rs944000926 505 dbSNP
rs1399551982 512 dbSNP
rs1011375727 522 dbSNP
rs1333893417 525 dbSNP
rs764462387 526 dbSNP
rs1020051176 533 dbSNP
rs1282137007 535 dbSNP
rs972716095 536 dbSNP
rs751880694 540 dbSNP
rs757584092 541 dbSNP
rs1383874206 543 dbSNP
rs9262132 559 dbSNP
rs1200507176 562 dbSNP
rs750877300 565 dbSNP
rs1441699848 568 dbSNP
rs1485431289 574 dbSNP
rs1019732721 576 dbSNP
rs1236529756 580 dbSNP
rs1369925596 589 dbSNP
rs1351556548 591 dbSNP
rs1306444427 594 dbSNP
rs756279789 595 dbSNP
rs544149016 602 dbSNP
rs1376245279 604 dbSNP
rs1301390412 609 dbSNP
rs759996510 615 dbSNP
rs919684651 619 dbSNP
rs1292545586 630 dbSNP
rs368355548 636 dbSNP
rs1354010729 638 dbSNP
rs1314363259 642 dbSNP
rs931024150 645 dbSNP
rs1159271709 647 dbSNP
rs1420805284 648 dbSNP
rs1411545118 652 dbSNP
rs894966699 657 dbSNP
rs545423918 661 dbSNP
rs947917122 665 dbSNP
rs375812926 674 dbSNP
rs189167886 687 dbSNP
rs1213256106 689 dbSNP
rs1410584887 689 dbSNP
rs1273356333 694 dbSNP
rs1306548824 714 dbSNP
rs906286255 731 dbSNP
rs1216593404 754 dbSNP
rs1319190300 765 dbSNP
rs1311235021 788 dbSNP
rs1258971945 789 dbSNP
rs1485692193 794 dbSNP
rs1356469204 795 dbSNP
rs1189280394 807 dbSNP
rs1295553539 813 dbSNP
rs1397736037 818 dbSNP
rs2032133 824 dbSNP
rs1046638687 831 dbSNP
rs1288875558 840 dbSNP
rs1030687990 859 dbSNP
rs1348004578 861 dbSNP
rs1164086564 862 dbSNP
rs1461936892 863 dbSNP
rs117245629 868 dbSNP
rs11961615 873 dbSNP
rs938032847 874 dbSNP
rs1140809 885 dbSNP
rs1426890649 888 dbSNP
rs1022326525 891 dbSNP
rs1420552819 895 dbSNP
rs145705859 902 dbSNP
rs1409572673 904 dbSNP
rs759895766 906 dbSNP
rs1213561143 914 dbSNP
rs1009586869 916 dbSNP
rs35267543 917 dbSNP
rs1336125508 923 dbSNP
rs1166901922 924 dbSNP
rs530286715 925 dbSNP
rs954233734 929 dbSNP
rs903008224 935 dbSNP
rs1295906855 942 dbSNP
rs1008601146 955 dbSNP
rs1383379649 962 dbSNP
rs1364822033 979 dbSNP
rs1377376959 986 dbSNP
rs1019531016 1005 dbSNP
rs986033089 1015 dbSNP
rs1019622546 1016 dbSNP
rs964272574 1019 dbSNP
rs1396689655 1031 dbSNP
rs996528803 1039 dbSNP
rs752763432 1040 dbSNP
rs547130161 1049 dbSNP
rs1372689439 1051 dbSNP
rs760955964 1055 dbSNP
rs1432708394 1080 dbSNP
rs1251155305 1082 dbSNP
rs965446005 1084 dbSNP
rs1270531647 1086 dbSNP
rs972685060 1088 dbSNP
rs1194411081 1090 dbSNP
rs1339179046 1092 dbSNP
rs1360890734 1094 dbSNP
rs1026629683 1095 dbSNP
rs1252282782 1102 dbSNP
rs1229090357 1105 dbSNP
rs1345303338 1108 dbSNP
rs1302060369 1110 dbSNP
rs1234461111 1111 dbSNP
rs1225768445 1112 dbSNP
rs1329277502 1115 dbSNP
rs560600482 1118 dbSNP
rs1396882801 1123 dbSNP
rs532628307 1128 dbSNP
rs982517932 1130 dbSNP
rs908740619 1140 dbSNP
rs1463659623 1147 dbSNP
rs1209518391 1150 dbSNP
rs1393574842 1153 dbSNP
rs552587988 1154 dbSNP
rs1173071851 1162 dbSNP
rs1278606083 1173 dbSNP
rs2269708 1177 dbSNP
rs982651754 1179 dbSNP
rs1180230694 1181 dbSNP
rs1437777307 1182 dbSNP
rs926906654 1191 dbSNP
rs1251612499 1193 dbSNP
rs1197999315 1195 dbSNP
rs538150927 1198 dbSNP
rs938240278 1203 dbSNP
rs1279225697 1208 dbSNP
rs1243086109 1223 dbSNP
rs1053737574 1224 dbSNP
rs1349369266 1240 dbSNP
rs1277289666 1244 dbSNP
rs1238170148 1245 dbSNP
rs1336282312 1249 dbSNP
rs1475262608 1252 dbSNP
rs548136932 1259 dbSNP
rs1397049627 1261 dbSNP
rs372820315 1267 dbSNP
rs945497408 1275 dbSNP
rs1312537303 1282 dbSNP
rs1435601982 1285 dbSNP
rs377256246 1291 dbSNP
rs890496682 1295 dbSNP
rs533773705 1297 dbSNP
rs149449487 1302 dbSNP
rs1364941507 1304 dbSNP
rs45503895 1316 dbSNP
rs1474454949 1318 dbSNP
rs1257297783 1319 dbSNP
rs1318847866 1323 dbSNP
rs1344414971 1324 dbSNP
rs1435079911 1332 dbSNP
rs1432566821 1337 dbSNP
rs1052210072 1338 dbSNP
rs1305258271 1340 dbSNP
rs35394004 1347 dbSNP
rs539153058 1348 dbSNP
rs1204105756 1351 dbSNP
rs556136626 1366 dbSNP
rs192586887 1367 dbSNP
rs566367308 1371 dbSNP
rs890040214 1376 dbSNP
rs996749719 1376 dbSNP
rs1415559514 1381 dbSNP
rs1272538674 1383 dbSNP
rs1026682165 1384 dbSNP
rs1352162803 1387 dbSNP
rs1007028969 1389 dbSNP
rs1019758401 1397 dbSNP
rs1400247458 1403 dbSNP
rs1207433129 1404 dbSNP
rs546981484 1405 dbSNP
rs753562572 1407 dbSNP
rs1003839917 1408 dbSNP
rs1160759562 1428 dbSNP
rs1015348423 1429 dbSNP
rs1207214357 1430 dbSNP
rs970853603 1433 dbSNP
rs972779765 1447 dbSNP
rs1255194369 1452 dbSNP
rs373524826 1455 dbSNP
rs1025718142 1468 dbSNP
rs926764746 1472 dbSNP
rs1240058485 1473 dbSNP
rs766303726 1477 dbSNP
rs1447115473 1480 dbSNP
rs984532426 1484 dbSNP
rs1211685024 1486 dbSNP
rs1376016263 1487 dbSNP
rs1471175279 1493 dbSNP
rs143958827 1504 dbSNP
rs981920917 1517 dbSNP
rs1407151490 1523 dbSNP
rs199996309 1529 dbSNP
rs915280835 1539 dbSNP
rs1327049455 1541 dbSNP
rs184571281 1541 dbSNP
rs935184067 1542 dbSNP
rs945382648 1551 dbSNP
rs1439258518 1552 dbSNP
rs1042747576 1554 dbSNP
rs1166085827 1558 dbSNP
rs1327638221 1558 dbSNP
rs796478265 1558 dbSNP
rs568327878 1560 dbSNP
rs1439738420 1561 dbSNP
rs1416906382 1562 dbSNP
rs914995448 1563 dbSNP
rs946367606 1564 dbSNP
rs1050526076 1569 dbSNP
rs1239069007 1570 dbSNP
rs944765035 1571 dbSNP
rs1253601575 1582 dbSNP
rs1467970240 1582 dbSNP
rs376784253 1593 dbSNP
rs1272053756 1597 dbSNP
rs1435826337 1597 dbSNP
rs1357068696 1610 dbSNP
rs568112596 1613 dbSNP
rs1340330579 1614 dbSNP
rs1299913075 1615 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293/HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1067870. RNA binding protein: AGO2. Condition:Ago2 IP-seq (mitotic cells) ...

- Kishore S; Gruber AR; Jedlinski DJ; Syed et al., 2013, Genome biology.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucggucgguUGAGUGUCACGUCu 5'
                   :|| : ||||||| 
Target 5' -------auGCU-GGAGUGCAGu 3'
1 - 15
Article - Kishore S; Gruber AR; Jedlinski DJ; Syed et al.
- Genome biology, 2013
BACKGROUND: In recent years, a variety of small RNAs derived from other RNAs with well-known functions such as tRNAs and snoRNAs, have been identified. The functional relevance of these RNAs is largely unknown. To gain insight into the complexity of snoRNA processing and the functional relevance of snoRNA-derived small RNAs, we sequence long and short RNAs, small RNAs that co-precipitate with the Argonaute 2 protein and RNA fragments obtained in photoreactive nucleotide-enhanced crosslinking and immunoprecipitation (PAR-CLIP) of core snoRNA-associated proteins. RESULTS: Analysis of these data sets reveals that many loci in the human genome reproducibly give rise to C/D box-like snoRNAs, whose expression and evolutionary conservation are typically less pronounced relative to the snoRNAs that are currently cataloged. We further find that virtually all C/D box snoRNAs are specifically processed inside the regions of terminal complementarity, retaining in the mature form only 4-5 nucleotides upstream of the C box and 2-5 nucleotides downstream of the D box. Sequencing of the total and Argonaute 2-associated populations of small RNAs reveals that despite their cellular abundance, C/D box-derived small RNAs are not efficiently incorporated into the Ago2 protein. CONCLUSIONS: We conclude that the human genome encodes a large number of snoRNAs that are processed along the canonical pathway and expressed at relatively low levels. Generation of snoRNA-derived processing products with alternative, particularly miRNA-like, functions appears to be uncommon.
LinkOut: [PMID: 23706177]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084046. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep4 HITS-CLIP data was present in GSM1084079. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1067870
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293/HeLa / Ago2 IP-seq (mitotic cells)
Location of target site ENST00000355962.4 | 3UTR | AUGCUGGAGUGCAGUGGCGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23706177 / GSE43666
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084046
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep4
Location of target site ENST00000355962.4 | 3UTR | UGCUGGAGUGCAGUGGCGCGAUCUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084079
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_AbnovaAb
Location of target site ENST00000355962.4 | 3UTR | AUGCUGGAGUGCAGUGGCGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
296 hsa-miR-4793-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092332 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT131237 ATG2A autophagy related 2A 2 2
MIRT145926 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT206559 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT226455 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT337662 ZNF695 zinc finger protein 695 2 2
MIRT405828 SIX4 SIX homeobox 4 2 2
MIRT455113 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT456756 TMEM239 transmembrane protein 239 2 4
MIRT457974 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT458173 LYRM4 LYR motif containing 4 2 4
MIRT458245 SLC9A7 solute carrier family 9 member A7 2 2
MIRT466145 TMEM120B transmembrane protein 120B 2 2
MIRT474981 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT475601 HMGB2 high mobility group box 2 2 4
MIRT480759 BMP3 bone morphogenetic protein 3 2 4
MIRT481156 AVL9 AVL9 cell migration associated 2 2
MIRT482155 AK2 adenylate kinase 2 2 2
MIRT488386 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT496575 KIF18B kinesin family member 18B 2 2
MIRT498411 TXNDC16 thioredoxin domain containing 16 2 4
MIRT504547 ZNF417 zinc finger protein 417 2 6
MIRT505417 TCF7L2 transcription factor 7 like 2 2 2
MIRT509349 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 6
MIRT512164 CD164 CD164 molecule 2 6
MIRT517238 PRIM1 DNA primase subunit 1 2 2
MIRT518671 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT519298 MLH1 mutL homolog 1 2 2
MIRT523662 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT525452 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539847 ZNF766 zinc finger protein 766 2 2
MIRT540076 SSH3 slingshot protein phosphatase 3 2 2
MIRT540320 PIGR polymeric immunoglobulin receptor 2 2
MIRT540548 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT540759 UTP6 UTP6, small subunit processome component 2 2
MIRT541545 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT541553 SLC35E1 solute carrier family 35 member E1 2 2
MIRT541666 ATP8B3 ATPase phospholipid transporting 8B3 2 4
MIRT541722 TFDP2 transcription factor Dp-2 2 2
MIRT541800 DUSP28 dual specificity phosphatase 28 2 2
MIRT541816 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT541907 VWA7 von Willebrand factor A domain containing 7 2 2
MIRT542154 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT542207 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542233 FUT9 fucosyltransferase 9 2 2
MIRT542320 SERPING1 serpin family G member 1 2 2
MIRT542369 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542476 APOC3 apolipoprotein C3 2 2
MIRT542641 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542660 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT542749 PRRG4 proline rich and Gla domain 4 2 4
MIRT542789 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT545442 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT546206 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT552270 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552655 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT554134 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT556795 KIAA1958 KIAA1958 2 2
MIRT564762 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT569428 STX7 syntaxin 7 2 2
MIRT573245 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT607390 LANCL3 LanC like 3 2 2
MIRT607430 NOTCH2NL notch 2 N-terminal like 2 2
MIRT607452 ZNF543 zinc finger protein 543 2 2
MIRT607580 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT607748 ANGPT4 angiopoietin 4 2 2
MIRT607907 SPRYD4 SPRY domain containing 4 2 2
MIRT608703 GMPR guanosine monophosphate reductase 2 2
MIRT612127 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 2 2
MIRT612786 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT616692 LPL lipoprotein lipase 2 2
MIRT617045 ZNF610 zinc finger protein 610 2 2
MIRT617091 ZNF43 zinc finger protein 43 2 2
MIRT617314 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT617355 MELK maternal embryonic leucine zipper kinase 2 2
MIRT617486 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT617579 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT617669 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT617722 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617893 PTCHD3 patched domain containing 3 2 2
MIRT617982 ZNF234 zinc finger protein 234 2 4
MIRT618434 MYLK3 myosin light chain kinase 3 2 4
MIRT618732 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT619045 CASS4 Cas scaffolding protein family member 4 2 2
MIRT619573 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT619671 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT619887 ABHD17B abhydrolase domain containing 17B 2 2
MIRT620519 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT620535 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT620996 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT621304 YIPF4 Yip1 domain family member 4 2 2
MIRT622086 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622168 SMYD1 SET and MYND domain containing 1 2 2
MIRT622543 PXMP4 peroxisomal membrane protein 4 2 2
MIRT622761 PGM3 phosphoglucomutase 3 2 2
MIRT622885 PDCL3 phosducin like 3 2 4
MIRT623130 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 2 2
MIRT624840 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT625047 MBD3 methyl-CpG binding domain protein 3 2 2
MIRT625059 ZNF556 zinc finger protein 556 2 2
MIRT625508 PPAPDC1A phospholipid phosphatase 4 2 2
MIRT625573 ANKRD42 ankyrin repeat domain 42 2 2
MIRT626133 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT626327 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626765 CDC14B cell division cycle 14B 2 2
MIRT626798 CSE1L chromosome segregation 1 like 2 2
MIRT627212 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT627225 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT627256 XKR4 XK related 4 2 2
MIRT628190 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT628466 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT628627 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT629040 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT630847 ACACB acetyl-CoA carboxylase beta 2 2
MIRT631721 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT632264 USP1 ubiquitin specific peptidase 1 2 4
MIRT632571 POLQ DNA polymerase theta 2 2
MIRT633992 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635211 ZNF286A zinc finger protein 286A 2 4
MIRT635249 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635261 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT635283 GK5 glycerol kinase 5 (putative) 2 2
MIRT635663 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT636251 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT636564 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT636814 TBC1D24 TBC1 domain family member 24 2 2
MIRT637358 ZNF460 zinc finger protein 460 2 2
MIRT637473 DEFB105B defensin beta 105B 2 4
MIRT637505 DEFB105A defensin beta 105A 2 4
MIRT637861 SC5D sterol-C5-desaturase 2 2
MIRT638080 ZNF652 zinc finger protein 652 2 2
MIRT638096 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT638174 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT638201 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT638278 SH2B3 SH2B adaptor protein 3 2 2
MIRT638714 FUT11 fucosyltransferase 11 2 2
MIRT638852 CLMP CXADR like membrane protein 2 2
MIRT639815 TMED8 transmembrane p24 trafficking protein family member 8 2 2
MIRT640879 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT640937 FAM129A family with sequence similarity 129 member A 2 2
MIRT640971 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT641642 GNAZ G protein subunit alpha z 2 2
MIRT641931 SLC25A16 solute carrier family 25 member 16 2 2
MIRT642136 CRY2 cryptochrome circadian clock 2 2 2
MIRT643199 JAK3 Janus kinase 3 2 2
MIRT643256 ZNF566 zinc finger protein 566 2 2
MIRT643378 TRIM16L tripartite motif containing 16 like 2 2
MIRT643683 AMER3 APC membrane recruitment protein 3 2 2
MIRT643728 MCMDC2 minichromosome maintenance domain containing 2 2 2
MIRT643949 CCDC141 coiled-coil domain containing 141 2 2
MIRT644915 SERF1B small EDRK-rich factor 1B 2 2
MIRT645163 NOL9 nucleolar protein 9 2 2
MIRT645547 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT645550 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT645572 TACR2 tachykinin receptor 2 2 2
MIRT646697 SERF1A small EDRK-rich factor 1A 2 2
MIRT647806 FRMD8 FERM domain containing 8 2 2
MIRT647903 CIRH1A UTP4, small subunit processome component 2 2
MIRT648978 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT649907 SLFN12L schlafen family member 12 like 2 2
MIRT650224 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT651880 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT651935 UBN1 ubinuclein 1 2 2
MIRT652839 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT652994 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT654800 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655591 OTUD7B OTU deubiquitinase 7B 2 2
MIRT658760 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT659358 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT660717 AMER1 APC membrane recruitment protein 1 2 2
MIRT660737 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT661088 TMEM145 transmembrane protein 145 2 2
MIRT661176 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT662005 ZNF445 zinc finger protein 445 2 2
MIRT662178 KIAA1210 KIAA1210 2 2
MIRT662270 OR51E2 olfactory receptor family 51 subfamily E member 2 2 2
MIRT663046 SLC16A4 solute carrier family 16 member 4 2 2
MIRT663476 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT664039 RPL27A ribosomal protein L27a 2 2
MIRT664096 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT664109 FUT1 fucosyltransferase 1 (H blood group) 2 2
MIRT664317 CD209 CD209 molecule 2 2
MIRT664455 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT664595 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 4
MIRT664694 DBF4 DBF4 zinc finger 2 2
MIRT665162 SF3A1 splicing factor 3a subunit 1 2 2
MIRT665214 RBM22 RNA binding motif protein 22 2 2
MIRT665254 ZNF286B zinc finger protein 286B 2 2
MIRT665268 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT665606 TTC39A tetratricopeptide repeat domain 39A 2 2
MIRT665830 TIMELESS timeless circadian clock 2 2
MIRT666201 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT666546 RNF115 ring finger protein 115 2 2
MIRT666602 REEP3 receptor accessory protein 3 2 2
MIRT666862 POU2F3 POU class 2 homeobox 3 2 4
MIRT666886 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT667158 NRXN3 neurexin 3 2 2
MIRT667252 NEK9 NIMA related kinase 9 2 2
MIRT667419 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT667434 METTL8 methyltransferase like 8 2 2
MIRT668023 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT668062 GPR75 G protein-coupled receptor 75 2 2
MIRT668070 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT668607 EHD4 EH domain containing 4 2 4
MIRT668694 DNAL1 dynein axonemal light chain 1 2 2
MIRT668782 DAAM1 dishevelled associated activator of morphogenesis 1 2 2
MIRT669037 CHEK1 checkpoint kinase 1 2 2
MIRT669044 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT669156 CCNG1 cyclin G1 2 2
MIRT670090 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT670206 SLC24A4 solute carrier family 24 member 4 2 2
MIRT672488 FUS FUS RNA binding protein 2 2
MIRT673830 SLC11A2 solute carrier family 11 member 2 2 2
MIRT675481 VEGFC vascular endothelial growth factor C 2 2
MIRT675634 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT677913 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678420 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678626 OLFML2A olfactomedin like 2A 2 2
MIRT678791 NUPL2 nucleoporin like 2 2 2
MIRT679561 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT680743 CA5B carbonic anhydrase 5B 2 2
MIRT682481 LIX1L limb and CNS expressed 1 like 2 4
MIRT682701 PSMD9 proteasome 26S subunit, non-ATPase 9 2 2
MIRT682759 MDM2 MDM2 proto-oncogene 2 2
MIRT682811 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682847 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT682896 XIAP X-linked inhibitor of apoptosis 2 2
MIRT682916 FAM73A mitoguardin 1 2 2
MIRT682935 ZNF292 zinc finger protein 292 2 2
MIRT682953 RPL12 ribosomal protein L12 2 2
MIRT682972 NF2 neurofibromin 2 2 2
MIRT683033 SUSD5 sushi domain containing 5 2 2
MIRT683081 A1BG alpha-1-B glycoprotein 2 2
MIRT683105 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT686640 TMEM184C transmembrane protein 184C 2 2
MIRT687444 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688401 EMC8 ER membrane protein complex subunit 8 2 2
MIRT688886 C3orf70 chromosome 3 open reading frame 70 2 2
MIRT689148 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 2 2
MIRT689234 RPS19 ribosomal protein S19 2 2
MIRT689306 C5AR2 complement component 5a receptor 2 2 2
MIRT689364 ZNF101 zinc finger protein 101 2 2
MIRT689498 SCARF1 scavenger receptor class F member 1 2 2
MIRT689655 RBM23 RNA binding motif protein 23 2 2
MIRT689897 SOD2 superoxide dismutase 2 2 2
MIRT690150 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT690601 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690805 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT690946 GLG1 golgi glycoprotein 1 2 2
MIRT691388 ATP13A4 ATPase 13A4 2 2
MIRT691408 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT692175 LRRC3C leucine rich repeat containing 3C 2 2
MIRT692235 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693283 GINM1 glycoprotein integral membrane 1 2 2
MIRT693439 TPGS1 tubulin polyglutamylase complex subunit 1 2 2
MIRT693460 HIST1H2AG histone cluster 1 H2A family member g 2 2
MIRT693768 ZNF383 zinc finger protein 383 2 2
MIRT694018 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694236 ZNF749 zinc finger protein 749 2 2
MIRT694321 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694347 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT694430 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT695763 WDR35 WD repeat domain 35 2 2
MIRT696167 TIPIN TIMELESS interacting protein 2 2
MIRT696417 DOCK7 dedicator of cytokinesis 7 2 2
MIRT696543 C3 complement C3 2 2
MIRT696998 CCDC80 coiled-coil domain containing 80 2 2
MIRT697232 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697806 UBXN2A UBX domain protein 2A 2 2
MIRT697944 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT698161 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT698778 STK4 serine/threonine kinase 4 2 2
MIRT700259 RBM12B RNA binding motif protein 12B 2 2
MIRT700970 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT701251 NUP35 nucleoporin 35 2 2
MIRT701607 MYPN myopalladin 2 2
MIRT702457 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702613 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT702691 IRGQ immunity related GTPase Q 2 2
MIRT702934 HMX3 H6 family homeobox 3 2 2
MIRT702991 HERPUD2 HERPUD family member 2 2 2
MIRT703148 GPR137C G protein-coupled receptor 137C 2 2
MIRT703980 EMC1 ER membrane protein complex subunit 1 2 2
MIRT704569 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT705065 C4orf32 family with sequence similarity 241 member A 2 2
MIRT705447 ATL2 atlastin GTPase 2 2 2
MIRT705856 AFF3 AF4/FMR2 family member 3 2 2
MIRT705886 ADIPOR2 adiponectin receptor 2 2 2
MIRT714370 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT715784 PHF12 PHD finger protein 12 2 2
MIRT715864 KIAA0101 PCNA clamp associated factor 2 2
MIRT715947 NUP93 nucleoporin 93 2 2
MIRT716132 THOC5 THO complex 5 2 2
MIRT717084 EBF4 early B-cell factor 4 2 2
MIRT725424 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT736091 GREM1 gremlin 1, DAN family BMP antagonist 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4793 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4793-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4793-3p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4793-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

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