pre-miRNA Information
pre-miRNA hsa-mir-1306   
Genomic Coordinates chr22: 20086058 - 20086142
Synonyms MIRN1306, hsa-mir-1306, MIR1306
Description Homo sapiens miR-1306 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-1306-5p
Sequence 15| CCACCUCCCCUGCAAACGUCCA |36
Evidence Not_experimental
Experiments
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5858927 8 COSMIC
COSM8222405 15 COSMIC
COSM1032175 17 COSMIC
COSM122562 22 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1197492175 14 dbSNP
rs1245517093 17 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol NPTXR   
Synonyms NPR
Description neuronal pentraxin receptor
Transcript NM_014293   
Expression
Putative miRNA Targets on NPTXR
3'UTR of NPTXR
(miRNA target sites are highlighted)
>NPTXR|NM_014293|3'UTR
   1 GGGGCCACCTCATCCAGGGCCCCTCCCTTGCCTGCCACTTTGGGGACTTGAGGGGGGTCATATTCCCTCCTCAGCCTGCC
  81 CACGCACTGGCCTTCCCTCCTGCCCCACTCCTGGCTGTGCCTCCCATTTCCCCTCACCTGTACCCACACCTCCAGAATGC
 161 CCTGCCCTGCGAGTGTGTCCCCTGTCCCCACCTGAGTGGGGAGGAGCGTCTCAAGTGAACAGTGGGAGCCTGCCCACCTG
 241 GCACTGCACTGGAGTTGTCTCTTACCCCACCCTCCCTGCCCATCAACTGTATCTGATTTCACTAATTTTGACAGCACCCC
 321 CAGTAGGGTAGGATTGTGTATGAGGGGGACCCCACTATCTCAGTGGTGGGGGTGGCCGCCCGCCCCCTTGTCCCCCATGC
 401 AACAGGCCCAGTGGCTTCCCCTTCAGGGCCACAACAGGCTGTAGAAGGGGATGACGAGGACATCAGAGGTTAGACTTACC
 481 CTCCTCCCTCTTTCCACCAGCTGCCAGTCAAGGGCAGTGGGATCTCGATGGAGCCTCCCCCCCCCCCCACCCATGCCTCC
 561 CTCTTCCTCCTCTTTCCTCCTCTCTTTGTGTGTAGCGGTTTGAATGTTGGTTCCATGCCTGGCCCAGCCCCACCTCAGTC
 641 TCCAGGACATTCCTTTCCCAGCTCCAGCCTGGAGGGAAGGGGACAAAGACCCCAGGAGGCCAAAGGGCTGCAGTCACCCC
 721 TTGTGCTCACCCATAGTGATGGCCACTGGTATAGTCATCGCTCTCCCTCCATGCCAAGGACAGGACTTGGACCGCTTCAG
 801 CCTGGGCTGGGAGCAGCCCTAAGGTAGAGGCCTCATGGCCCAGGAGACCCCACCTCTGGCAGAGCCACATTACCTACCCT
 881 GTGCATGGTCCTGGGGCAGCAAGGAAGAAGCTCAGAGGGTGGGGAGAAGCATGAAGCAGTGAGCAGAGCACTGGGTGAGA
 961 GGGAGAAGACCTTGGTTCCTAGCCAGCCCTGCTAATGTGCTGTGTGGCCTTCTGTAAGTCCCTGCCCTCTCTGGGCCTGG
1041 CCTTCCTCATTCGTGAGCTGAGGCCCTCGCTTTGGTCATTTGCTCTCCAGATTGGGTGTGAGCTTCTCTGTGATTCCAGG
1121 TGGATATGTGGGGAAAGCTCTGGTGACCCTGGGCTTCGCAGGGGTAGATCCCAGGACTCGGCAGTGGATGGGATGCAGCC
1201 AGTCATGGGTTAGGGTCAGCAGAGACTCAGAGTCCAGGGCAAGGTTCAAGGCAGACTAACCTCATGCATGGATTGTAAAA
1281 AACCAGCTCCCTTTGGATCAACCCAGCCTGGCACCCTTGCCTGTCTGAGAGTGTCTCAAAGGGCTGATGGCTTCCTGGTC
1361 CCCTTGAGTCATCACCAGCTTCCCCAAGAGAGTGTCAGAATCTTAAGAGCTGAGAGGCCGGGCACGGTGGCTCACGCCTG
1441 TAATCCCAGCACTTTGGGAGGCTGAGACAGGCAGATCACTTGAGGTCAGGAGTTCGAAGTCAGCCTGGCCAACGTGGTGA
1521 AACCCCATCTTCACTAAAAATACAAAACTTAGCTGGTTAGGTGGTGCATGCCTGTAGTCCCAGCTACTCGGGAGGCCGAG
1601 GCAGAAGAATCTCTTGAACTGAGGAGGTGGAGGTTGCAGTGAGCCGAGATCACGCCATTGCACTCCAGCCTGGGCAACAG
1681 AGCAAGACTCCATCTCAAAAAAATAATAATAATCTTAAAGATGAGAAAAGCCACCCCATCTGGCACCACAGCTGCATCTT
1761 GCTTGTGAGAAATGGGGAAGAGTTCAGGGAGGACACGTGACCTGCACAGGATCACAGAGCATGGGGCAGAGCCAGGACTA
1841 GAGCTCAGGGCATCTGACTCCCTCTTCAGTGTTCTTCCCCCTCCATGTTGCCTGCCCCTGAAGACCTTTGAGTTCAGTCT
1921 ACACCTAAGCAGGTAGACATCCGCGAGGTCAGATGCTTTCCAACATGACACCTGAACATCTTCCTTTATGCAACACCCAA
2001 ACATCTTGGCATCCCCACCCCAGGAAGTGCGGGGAGGAGGTTATGATCCCTGGGCGCTTCGGCAGAATGGAGAGCTGAGG
2081 TGTCCCTCCCCTGCTAGTCACCTACCAGGTGTCTGAGCAGCTGCATGCTCCCTGGCTCAAGTGGGCACTGTACCTTTTGC
2161 CTGCCTTTTTGTTCCCTATCTCCACTCCCTGAGGCCACTTAGCCTGAGACATGATGCAAGAGCTGCAGGCCGGGGGGCTC
2241 AGTGCCATGGAAGCTACTCCAAGTTGCATTGCCTCCCGCGCCCAGATCCTGCTTTCCATTTCGAGAACATAAATAGATTG
2321 CCCAGCCCCTCCAGTACAATCCCACTGGAAGAAAAGGCAATGGCGGGCTTCAGCCAGACCTGCTGAGACCTAGGTTGCCA
2401 CGGTAACAGCCAAAGACATCAACCCAAGTGCTGGGTCAAGTGTCTCATCATACTGGCACTGTTGCTGGGGTGACGGCAGA
2481 ATTCAGAACTTCAATTTCAGTGACGCCAAGCTTGATGTGTTTCTGTTATTGTTTTGAAGAAGGTAGCTCTTGTGGAGGAC
2561 TTGGGAGAAGGATGGGGTCTTAGGAAGGAGGTGACAGCACTTGCATGGTCACTTGAGCCCACACACACGCTCAACCCCAA
2641 GTCCTTTATGCTTTGTCACAGTGAAGATGAGACCTCTGACGTCCAAGCCTTGTTCCTGTGCTGCATCACCCACTCAGCCT
2721 TCCAAAGGGAACAGGAACAAATTTCCCCAGCACCACTGTTTGGGTCCCGCTTTTCCTATCTTCTGCTGCCCCTGAGCACA
2801 TCCAAGCAGACAGGGAAAGAGGAGTCAGACATGGCCCAGTCACATCCTGAGCTGCTCCTGGCTGATAACCACGATGGAGC
2881 CCGTGTTTGTCCTGCCATCTGGCACTGCACTGAGTGTGGCACAGGCACCGTCCTGTTGATCTCACAACACAGTTCTAAGT
2961 TAGGACGTTCTTGGCTCCGTTAGACAGGTGAGGAAACTGGGGCACAGAGAGGTGATGTCATCTGCCTGGTGTCAATCAGC
3041 TAGCAAGTGATGGAGCCCAGATTTCAAACCAAAGGGGGTTACGTCCAGGGGCTGAGTTCCCACTCACCTGTGTAGAGTGC
3121 CATCTGGGCACCATTGCTCCAGACGTGTTCCGACCCCTTTCCCAGCCCACAGGGCTTGAAGTGAAGGAACAGAGGCAGGG
3201 GGTGGGCCAGCCCCAGGGCCAGGGTCCCCTTGGTGAAGCCGTGCCAGGGGGCTCAGCTGCTTCAGGGAATGTGTCCCTCC
3281 CACCATGGGCCAGAGCTTCAGCCCTTCTTTAGCTCAGCTAGAGTTCACAGGAGAGCCAAAAAAGAAAAGGAAGCTGAGCA
3361 TCTCCCGAGTCCTGGGCAGGGAAGGGGAGGGAAATTGCTGCTTCTCCAACTCTTGCTTGGGGCCAAGCCCTGCACCAGTT
3441 GCTTCCCAGCTGTTATCTGCCAGATCTTCCCATCTTGTGGCATGTGGTGCCCCCACCAACATCCCAAGGGGACCAATCCC
3521 CTTGCCACCACTTTGCATCACCTGGGACCACAGATTTGGACAGGAAGGGCTCTGAGAAGAGGCCAAAGCCCTCATTTTAC
3601 AGATGAGGAAGCTGAAGCCCGGGGAGGGGAGCGACCCTCAAGGCCACCCAGCTGGACACGGGAGACTTGAGCCCAGCCTT
3681 CTGACTGCATTCAGCCCTCTCTAGGACGCAGCAGCCTCTCCCCAGCACTGAGTCCCCCCTCCTTTGTGTGTCCCAGCACC
3761 CTTGGCCTGAGTAAACTTGGAAAGGGGCTCCCTCCCAGAGAAGGGACTACTCTCTTCACCCCTTTATTCCAGCTGCCTGC
3841 CACCCCAGACCCCCACCTCCCACCCTGACCCCCGACCCCTGGGTGGGGAAGGGGCTCACATGGGCCCAGGCTGAGTGTGA
3921 GTGAGCATGTCAAGTTGTCTGACACTGTGACATTAGTGCACCCTACTGACAACCCCTCCCCAGCCTTGCCCCTTTCTCCT
4001 CTCCCTGTTTTGTACATAAATTGACATGAGCTGCAACATGTGTGCGTGTGTGTGCGTGTGTGTGTGTGTGTATGTGTGTG
4081 TGATCTGTGTCATGGTTTTGTTACCTTTTTGTTTTTGTAAACTTGAATGTTCAAAATAAACATGCTGTTTACTCTGAGAA
4161 AAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acCUGCAAACGUCC--CCUCCACc 5'
            |: || | :|||  ||||||| 
Target 5' atGGGGTCT-TAGGAAGGAGGTGa 3'
2572 - 2594 153.00 -18.20
2
miRNA  3' accugcaAAC--GUCCCCUCCACc 5'
                 |||  | | ||||||| 
Target 5' gaatctcTTGAACTGAGGAGGTGg 3'
1607 - 1630 149.00 -16.80
3
miRNA  3' acCUGCAAACGUCC--CCUCCAcc 5'
            || |  |||:||  ||||||  
Target 5' agGAAG--TGCGGGGAGGAGGTta 3'
2022 - 2043 138.00 -24.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26647871 24 COSMIC
COSN9165906 114 COSMIC
COSN8612714 190 COSMIC
COSN9165905 306 COSMIC
COSN20117467 537 COSMIC
COSN8018656 544 COSMIC
COSN8612713 545 COSMIC
COSN20094003 546 COSMIC
COSN8612712 549 COSMIC
COSN31595271 615 COSMIC
COSN26564503 653 COSMIC
COSN28707721 668 COSMIC
COSN8612711 707 COSMIC
COSN27565243 841 COSMIC
COSN5771225 865 COSMIC
COSN22461361 893 COSMIC
COSN32043037 1002 COSMIC
COSN9165904 1295 COSMIC
COSN22211257 1420 COSMIC
COSN8018655 1590 COSMIC
COSN17078542 1879 COSMIC
COSN31779365 2060 COSMIC
COSN8010610 2279 COSMIC
COSN28675345 2313 COSMIC
COSN31542955 2368 COSMIC
COSN31485744 2415 COSMIC
COSN31603071 2476 COSMIC
COSN28127116 2494 COSMIC
COSN31570603 2746 COSMIC
COSN31481692 2768 COSMIC
COSN24554178 3364 COSMIC
COSN8010609 3415 COSMIC
COSN8018654 3632 COSMIC
COSN23428568 3668 COSMIC
COSN26644487 4076 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs749292661 1 dbSNP
rs1388994596 6 dbSNP
rs1165399645 8 dbSNP
rs1458827800 11 dbSNP
rs372326693 13 dbSNP
rs1190805266 19 dbSNP
rs1420392256 21 dbSNP
rs769701255 25 dbSNP
rs747875634 30 dbSNP
rs1042139981 31 dbSNP
rs780838682 35 dbSNP
rs1291723537 36 dbSNP
rs1210248116 37 dbSNP
rs1158449686 40 dbSNP
rs201779843 42 dbSNP
rs555409349 45 dbSNP
rs751900052 46 dbSNP
rs764524203 46 dbSNP
rs961578738 51 dbSNP
rs537575374 52 dbSNP
rs569904698 54 dbSNP
rs1028509859 57 dbSNP
rs565975768 58 dbSNP
rs1277666716 61 dbSNP
rs866004607 66 dbSNP
rs1421810685 67 dbSNP
rs1284976818 71 dbSNP
rs1347435884 75 dbSNP
rs996809152 81 dbSNP
rs185976827 83 dbSNP
rs772458588 84 dbSNP
rs1181771626 86 dbSNP
rs180930402 90 dbSNP
rs1001922298 91 dbSNP
rs1004694671 94 dbSNP
rs566403657 106 dbSNP
rs1047576912 116 dbSNP
rs1432498473 117 dbSNP
rs1175100701 124 dbSNP
rs1215452601 144 dbSNP
rs1390599399 150 dbSNP
rs930438328 160 dbSNP
rs547994040 170 dbSNP
rs945599775 171 dbSNP
rs1310118987 173 dbSNP
rs899093041 174 dbSNP
rs1232433440 186 dbSNP
rs1055016208 189 dbSNP
rs937695880 196 dbSNP
rs927618411 205 dbSNP
rs745321753 208 dbSNP
rs930698456 216 dbSNP
rs1046180437 227 dbSNP
rs1159169796 228 dbSNP
rs529474095 249 dbSNP
rs1359956677 265 dbSNP
rs1297733224 269 dbSNP
rs1420364911 273 dbSNP
rs1451995917 278 dbSNP
rs1362745331 282 dbSNP
rs1395293782 284 dbSNP
rs543213062 288 dbSNP
rs568691355 292 dbSNP
rs974302755 298 dbSNP
rs1410487497 310 dbSNP
rs1325115206 312 dbSNP
rs1188181871 315 dbSNP
rs989627165 317 dbSNP
rs1438801167 322 dbSNP
rs1305975518 325 dbSNP
rs1331919015 329 dbSNP
rs1226892071 336 dbSNP
rs867764021 340 dbSNP
rs1268805464 341 dbSNP
rs746946300 357 dbSNP
rs1341878929 368 dbSNP
rs958164714 371 dbSNP
rs549561761 377 dbSNP
rs976066104 378 dbSNP
rs1192375612 381 dbSNP
rs965439939 382 dbSNP
rs1020019962 384 dbSNP
rs960334047 390 dbSNP
rs1287771974 393 dbSNP
rs1207661389 395 dbSNP
rs1427587998 397 dbSNP
rs1190516938 400 dbSNP
rs1004322950 403 dbSNP
rs1033323170 412 dbSNP
rs946494297 418 dbSNP
rs914992521 422 dbSNP
rs1164210893 425 dbSNP
rs1392189133 428 dbSNP
rs1462899145 430 dbSNP
rs1328014220 437 dbSNP
rs531443104 447 dbSNP
rs1247432803 452 dbSNP
rs1316653583 455 dbSNP
rs1278094972 456 dbSNP
rs1328625942 458 dbSNP
rs903599708 459 dbSNP
rs1293000904 461 dbSNP
rs1333341063 468 dbSNP
rs1235636092 469 dbSNP
rs1265537240 475 dbSNP
rs1485246838 479 dbSNP
rs1400732069 488 dbSNP
rs1263405955 489 dbSNP
rs1447425869 496 dbSNP
rs113422671 497 dbSNP
rs1027041950 498 dbSNP
rs1476167248 512 dbSNP
rs1386369955 523 dbSNP
rs1165529476 527 dbSNP
rs1389756249 528 dbSNP
rs1163694695 536 dbSNP
rs1157104943 537 dbSNP
rs1453137027 537 dbSNP
rs1459238836 538 dbSNP
rs1010111237 540 dbSNP
rs563913579 541 dbSNP
rs113178886 542 dbSNP
rs61165898 543 dbSNP
rs1055086711 544 dbSNP
rs1486509786 544 dbSNP
rs372051340 544 dbSNP
rs1002523376 545 dbSNP
rs866222992 546 dbSNP
rs777449784 547 dbSNP
rs60073037 548 dbSNP
rs10566825 549 dbSNP
rs1250483450 549 dbSNP
rs375848943 549 dbSNP
rs377301605 549 dbSNP
rs752466022 549 dbSNP
rs796088144 549 dbSNP
rs1178829736 550 dbSNP
rs80148991 550 dbSNP
rs1240157193 551 dbSNP
rs1456694020 557 dbSNP
rs1258014368 559 dbSNP
rs1219730408 586 dbSNP
rs1440362554 587 dbSNP
rs939813858 588 dbSNP
rs138908300 592 dbSNP
rs992013518 593 dbSNP
rs960594020 595 dbSNP
rs1232620445 596 dbSNP
rs1354258537 597 dbSNP
rs560052568 605 dbSNP
rs1325748779 606 dbSNP
rs1400470818 610 dbSNP
rs150261473 611 dbSNP
rs1300546816 612 dbSNP
rs8140217 613 dbSNP
rs1294625021 616 dbSNP
rs556327281 627 dbSNP
rs1009333396 629 dbSNP
rs936879134 635 dbSNP
rs957070198 642 dbSNP
rs1458324787 648 dbSNP
rs1213146860 649 dbSNP
rs543510997 652 dbSNP
rs1019096168 653 dbSNP
rs921422752 660 dbSNP
rs1479140108 663 dbSNP
rs1466027089 666 dbSNP
rs1421562751 675 dbSNP
rs188289533 680 dbSNP
rs557844458 684 dbSNP
rs1477393348 690 dbSNP
rs1424980323 692 dbSNP
rs1461329681 710 dbSNP
rs889366292 719 dbSNP
rs1395984432 723 dbSNP
rs1436804990 724 dbSNP
rs1287902664 728 dbSNP
rs1359675959 729 dbSNP
rs184622856 731 dbSNP
rs141109298 732 dbSNP
rs1334085441 735 dbSNP
rs899171039 736 dbSNP
rs1456733157 741 dbSNP
rs1271378102 746 dbSNP
rs983200556 749 dbSNP
rs951325479 757 dbSNP
rs1036828098 759 dbSNP
rs182029600 760 dbSNP
rs1199824828 763 dbSNP
rs995588448 765 dbSNP
rs28520676 768 dbSNP
rs1196318722 771 dbSNP
rs752353540 773 dbSNP
rs1459530662 780 dbSNP
rs1475186351 782 dbSNP
rs963241708 784 dbSNP
rs1415394145 789 dbSNP
rs536157818 793 dbSNP
rs57790029 794 dbSNP
rs1343076833 799 dbSNP
rs1298604333 800 dbSNP
rs1002152796 804 dbSNP
rs1412897483 805 dbSNP
rs1295025040 806 dbSNP
rs1358650046 816 dbSNP
rs1199992510 823 dbSNP
rs550388193 827 dbSNP
rs906463781 832 dbSNP
rs1046283980 834 dbSNP
rs1009649092 839 dbSNP
rs939222258 840 dbSNP
rs1189468470 841 dbSNP
rs892127558 844 dbSNP
rs980663669 859 dbSNP
rs968088347 869 dbSNP
rs1239719701 874 dbSNP
rs1473373490 876 dbSNP
rs1053499150 897 dbSNP
rs1405100083 897 dbSNP
rs1374408305 919 dbSNP
rs1158841796 923 dbSNP
rs1308343973 927 dbSNP
rs1217949729 937 dbSNP
rs1447226367 939 dbSNP
rs1432612602 946 dbSNP
rs914930090 947 dbSNP
rs751582867 951 dbSNP
rs1341012304 953 dbSNP
rs567003887 958 dbSNP
rs900034361 970 dbSNP
rs1279071605 984 dbSNP
rs1413442929 989 dbSNP
rs1040294366 995 dbSNP
rs1402231802 996 dbSNP
rs1242650026 997 dbSNP
rs944189804 1000 dbSNP
rs77601830 1001 dbSNP
rs757409385 1003 dbSNP
rs1259504923 1014 dbSNP
rs1281095918 1015 dbSNP
rs1443519678 1015 dbSNP
rs570558023 1020 dbSNP
rs113698946 1021 dbSNP
rs974183954 1023 dbSNP
rs1178925775 1026 dbSNP
rs1394109629 1028 dbSNP
rs188898767 1040 dbSNP
rs1179721880 1047 dbSNP
rs375761669 1048 dbSNP
rs953531148 1050 dbSNP
rs559741444 1052 dbSNP
rs867020513 1053 dbSNP
rs1187413942 1062 dbSNP
rs1029216405 1064 dbSNP
rs754067020 1068 dbSNP
rs981027947 1069 dbSNP
rs899139222 1075 dbSNP
rs1346108798 1078 dbSNP
rs1280759873 1091 dbSNP
rs1036348000 1097 dbSNP
rs970554192 1098 dbSNP
rs185202914 1110 dbSNP
rs1198746248 1120 dbSNP
rs1251785818 1122 dbSNP
rs1466884845 1127 dbSNP
rs1200514994 1130 dbSNP
rs1025349613 1131 dbSNP
rs558826715 1134 dbSNP
rs1474953619 1137 dbSNP
rs1240646165 1138 dbSNP
rs1375200458 1142 dbSNP
rs1009429657 1146 dbSNP
rs1478960074 1152 dbSNP
rs1057148351 1153 dbSNP
rs939153584 1157 dbSNP
rs529948550 1158 dbSNP
rs1332095102 1164 dbSNP
rs1031946907 1170 dbSNP
rs1276639613 1173 dbSNP
rs1044935862 1176 dbSNP
rs1219744552 1178 dbSNP
rs1272038109 1179 dbSNP
rs946634384 1180 dbSNP
rs1417306047 1181 dbSNP
rs562534274 1184 dbSNP
rs1359560705 1186 dbSNP
rs1000464319 1190 dbSNP
rs1267606875 1195 dbSNP
rs899604315 1204 dbSNP
rs56025928 1206 dbSNP
rs944204840 1207 dbSNP
rs891293580 1208 dbSNP
rs1164089914 1211 dbSNP
rs1417305062 1212 dbSNP
rs374681864 1214 dbSNP
rs1473375284 1217 dbSNP
rs1260208301 1223 dbSNP
rs1191655087 1225 dbSNP
rs1296774720 1229 dbSNP
rs1047798699 1231 dbSNP
rs1401200717 1235 dbSNP
rs1264204265 1238 dbSNP
rs1219009663 1239 dbSNP
rs1293199502 1240 dbSNP
rs192817507 1241 dbSNP
rs919948601 1248 dbSNP
rs1246357346 1255 dbSNP
rs911608080 1258 dbSNP
rs1349532829 1261 dbSNP
rs1318518387 1264 dbSNP
rs1287386003 1269 dbSNP
rs564156204 1272 dbSNP
rs761058006 1285 dbSNP
rs937298085 1297 dbSNP
rs927380125 1299 dbSNP
rs1187202905 1307 dbSNP
rs981511030 1320 dbSNP
rs971000727 1329 dbSNP
rs1295032055 1333 dbSNP
rs1024793396 1347 dbSNP
rs1453372485 1357 dbSNP
rs1157062231 1359 dbSNP
rs1397638027 1361 dbSNP
rs1362912576 1376 dbSNP
rs1420690437 1384 dbSNP
rs1339228348 1387 dbSNP
rs372848640 1412 dbSNP
rs1377640160 1419 dbSNP
rs988039465 1420 dbSNP
rs564568822 1422 dbSNP
rs111729970 1425 dbSNP
rs146533376 1426 dbSNP
rs188060252 1435 dbSNP
rs1310979696 1444 dbSNP
rs1354230555 1445 dbSNP
rs144206642 1447 dbSNP
rs1253961880 1461 dbSNP
rs1348508267 1463 dbSNP
rs1164600957 1491 dbSNP
rs1200936813 1492 dbSNP
rs759954060 1495 dbSNP
rs1004882544 1496 dbSNP
rs6001247 1498 dbSNP
rs770323499 1506 dbSNP
rs1382409282 1513 dbSNP
rs575249739 1514 dbSNP
rs1357743408 1519 dbSNP
rs1468066125 1522 dbSNP
rs1303911546 1524 dbSNP
rs1395215152 1526 dbSNP
rs1424354053 1527 dbSNP
rs1007970470 1536 dbSNP
rs905979541 1543 dbSNP
rs772811442 1564 dbSNP
rs1233043674 1568 dbSNP
rs1047244425 1569 dbSNP
rs556455661 1579 dbSNP
rs946574467 1586 dbSNP
rs893718353 1588 dbSNP
rs769449749 1589 dbSNP
rs146814919 1590 dbSNP
rs937329148 1593 dbSNP
rs767888472 1597 dbSNP
rs747857176 1598 dbSNP
rs950142313 1609 dbSNP
rs1190798517 1636 dbSNP
rs1423569393 1643 dbSNP
rs913281859 1645 dbSNP
rs550252649 1646 dbSNP
rs1373008970 1648 dbSNP
rs570974715 1653 dbSNP
rs1278206884 1654 dbSNP
rs1400357054 1658 dbSNP
rs1215813127 1659 dbSNP
rs746901627 1661 dbSNP
rs1439773193 1664 dbSNP
rs1365123842 1665 dbSNP
rs925204231 1669 dbSNP
rs987196934 1671 dbSNP
rs1387142262 1673 dbSNP
rs1294514252 1675 dbSNP
rs552223358 1676 dbSNP
rs1220350976 1686 dbSNP
rs879146111 1687 dbSNP
rs539596289 1690 dbSNP
rs2235136 1698 dbSNP
rs1329925379 1704 dbSNP
rs973590475 1706 dbSNP
rs757903573 1714 dbSNP
rs1015142243 1720 dbSNP
rs1192148768 1721 dbSNP
rs780066547 1723 dbSNP
rs1262856524 1725 dbSNP
rs1477144166 1731 dbSNP
rs1173432870 1732 dbSNP
rs566092285 1735 dbSNP
rs1008417385 1738 dbSNP
rs1404242083 1738 dbSNP
rs955169958 1742 dbSNP
rs1162011640 1743 dbSNP
rs1025371420 1747 dbSNP
rs1351269827 1754 dbSNP
rs142366654 1764 dbSNP
rs529936019 1775 dbSNP
rs984121976 1778 dbSNP
rs1038676455 1796 dbSNP
rs116118263 1797 dbSNP
rs905880238 1802 dbSNP
rs1045747117 1811 dbSNP
rs550616654 1817 dbSNP
rs1341278291 1822 dbSNP
rs1227810803 1831 dbSNP
rs1424775194 1841 dbSNP
rs184298013 1846 dbSNP
rs950064076 1847 dbSNP
rs913323384 1858 dbSNP
rs1403403714 1859 dbSNP
rs868267906 1860 dbSNP
rs1487506531 1875 dbSNP
rs1196682376 1878 dbSNP
rs1457318123 1879 dbSNP
rs1022164705 1880 dbSNP
rs1472724121 1881 dbSNP
rs1179629938 1884 dbSNP
rs1206056103 1886 dbSNP
rs532304312 1895 dbSNP
rs1010697915 1897 dbSNP
rs1300190020 1898 dbSNP
rs1358449881 1906 dbSNP
rs1421283856 1907 dbSNP
rs1219385721 1910 dbSNP
rs1373650799 1913 dbSNP
rs1374782348 1921 dbSNP
rs893640897 1930 dbSNP
rs1282529160 1932 dbSNP
rs757248325 1933 dbSNP
rs1307612695 1934 dbSNP
rs1229165764 1938 dbSNP
rs564934814 1939 dbSNP
rs115622975 1942 dbSNP
rs148451452 1943 dbSNP
rs1300386139 1944 dbSNP
rs979347408 1945 dbSNP
rs2235135 1947 dbSNP
rs778079770 1950 dbSNP
rs145573513 1965 dbSNP
rs1378695633 1971 dbSNP
rs1177696896 1972 dbSNP
rs1378100839 1976 dbSNP
rs931670329 1977 dbSNP
rs575018680 1979 dbSNP
rs911106829 1981 dbSNP
rs1412725547 1988 dbSNP
rs16999448 1990 dbSNP
rs955183438 1992 dbSNP
rs942183731 1994 dbSNP
rs149738724 2007 dbSNP
rs1178828088 2010 dbSNP
rs868333945 2015 dbSNP
rs993917349 2016 dbSNP
rs983661009 2022 dbSNP
rs1242533544 2024 dbSNP
rs1310505226 2029 dbSNP
rs764280960 2031 dbSNP
rs1481995345 2032 dbSNP
rs960266339 2036 dbSNP
rs962898150 2043 dbSNP
rs879217998 2045 dbSNP
rs1443428877 2049 dbSNP
rs1017094345 2052 dbSNP
rs867199516 2055 dbSNP
rs191353823 2056 dbSNP
rs1002083302 2060 dbSNP
rs1458835564 2061 dbSNP
rs980067266 2068 dbSNP
rs970031656 2073 dbSNP
rs1283410107 2074 dbSNP
rs1174048022 2080 dbSNP
rs906126106 2086 dbSNP
rs1425807103 2092 dbSNP
rs1464992685 2094 dbSNP
rs1170099997 2098 dbSNP
rs1398167599 2101 dbSNP
rs1449343090 2120 dbSNP
rs1239932398 2132 dbSNP
rs1330952291 2140 dbSNP
rs1434766972 2141 dbSNP
rs1336686091 2145 dbSNP
rs1346349092 2148 dbSNP
rs1309814810 2151 dbSNP
rs527960447 2160 dbSNP
rs1198962446 2162 dbSNP
rs1021676035 2163 dbSNP
rs1449462300 2166 dbSNP
rs1200767867 2176 dbSNP
rs1012091615 2178 dbSNP
rs1378542161 2197 dbSNP
rs562068512 2200 dbSNP
rs1014258444 2202 dbSNP
rs1191391102 2205 dbSNP
rs891793956 2209 dbSNP
rs1436651901 2212 dbSNP
rs1467242326 2223 dbSNP
rs1168499884 2232 dbSNP
rs1358924703 2236 dbSNP
rs1158229144 2237 dbSNP
rs1418885827 2238 dbSNP
rs1390306327 2240 dbSNP
rs753032473 2241 dbSNP
rs1325975622 2242 dbSNP
rs1161203490 2246 dbSNP
rs1346504607 2248 dbSNP
rs767739336 2253 dbSNP
rs11705123 2257 dbSNP
rs1276839070 2258 dbSNP
rs1255367986 2268 dbSNP
rs1342863343 2272 dbSNP
rs1188107127 2275 dbSNP
rs751960080 2278 dbSNP
rs558736224 2279 dbSNP
rs903722155 2280 dbSNP
rs995803813 2288 dbSNP
rs1487833364 2289 dbSNP
rs900179589 2291 dbSNP
rs1043585484 2302 dbSNP
rs113896615 2303 dbSNP
rs1194019491 2309 dbSNP
rs741977 2313 dbSNP
rs987084802 2316 dbSNP
rs907645001 2323 dbSNP
rs1047876329 2329 dbSNP
rs933712969 2345 dbSNP
rs1296679792 2364 dbSNP
rs554122776 2365 dbSNP
rs980326947 2367 dbSNP
rs1294426648 2376 dbSNP
rs1338168776 2379 dbSNP
rs970005261 2381 dbSNP
rs972498675 2390 dbSNP
rs990192247 2394 dbSNP
rs765427419 2397 dbSNP
rs759773207 2398 dbSNP
rs1352438123 2401 dbSNP
rs535811402 2404 dbSNP
rs956307772 2405 dbSNP
rs1486171824 2406 dbSNP
rs1199771180 2408 dbSNP
rs1255612993 2420 dbSNP
rs962470152 2424 dbSNP
rs1031790759 2431 dbSNP
rs568781816 2434 dbSNP
rs762381636 2440 dbSNP
rs1016662159 2446 dbSNP
rs183344591 2453 dbSNP
rs1400766812 2469 dbSNP
rs772696805 2470 dbSNP
rs996113253 2474 dbSNP
rs970591182 2475 dbSNP
rs191080218 2479 dbSNP
rs776359103 2489 dbSNP
rs1290471621 2493 dbSNP
rs1024597555 2502 dbSNP
rs769361674 2504 dbSNP
rs1367858770 2505 dbSNP
rs1375720477 2509 dbSNP
rs1005918742 2517 dbSNP
rs1014911961 2526 dbSNP
rs1475915347 2528 dbSNP
rs1311230078 2530 dbSNP
rs891827696 2538 dbSNP
rs761425731 2539 dbSNP
rs1192489324 2541 dbSNP
rs1447291183 2544 dbSNP
rs115471141 2559 dbSNP
rs1208484779 2571 dbSNP
rs1254167484 2573 dbSNP
rs1346968879 2578 dbSNP
rs1488343494 2592 dbSNP
rs1000129283 2595 dbSNP
rs904629872 2603 dbSNP
rs1205677197 2606 dbSNP
rs1274372329 2609 dbSNP
rs1801535 2613 dbSNP
rs1235614884 2617 dbSNP
rs1039497600 2618 dbSNP
rs112028648 2627 dbSNP
rs889616441 2628 dbSNP
rs1420046267 2629 dbSNP
rs1051057468 2635 dbSNP
rs1376442766 2637 dbSNP
rs1467983787 2639 dbSNP
rs1277717989 2644 dbSNP
rs527761751 2651 dbSNP
rs1176562795 2655 dbSNP
rs933875633 2663 dbSNP
rs560600605 2668 dbSNP
rs948969380 2671 dbSNP
rs1373868618 2674 dbSNP
rs113309205 2679 dbSNP
rs990549888 2680 dbSNP
rs1313914459 2681 dbSNP
rs183531753 2689 dbSNP
rs1263890515 2699 dbSNP
rs1384892534 2718 dbSNP
rs1393396976 2732 dbSNP
rs1317361897 2735 dbSNP
rs934719499 2745 dbSNP
rs1253303094 2753 dbSNP
rs940969345 2756 dbSNP
rs563188362 2758 dbSNP
rs954499712 2763 dbSNP
rs1030151335 2764 dbSNP
rs1326514455 2765 dbSNP
rs1462891096 2767 dbSNP
rs768289535 2768 dbSNP
rs964978127 2769 dbSNP
rs1169414879 2777 dbSNP
rs980257130 2777 dbSNP
rs970284435 2778 dbSNP
rs1457062557 2780 dbSNP
rs1024880377 2787 dbSNP
rs993119803 2802 dbSNP
rs1374479298 2805 dbSNP
rs956310399 2809 dbSNP
rs370037070 2814 dbSNP
rs1000160567 2818 dbSNP
rs1196263899 2831 dbSNP
rs1432976978 2832 dbSNP
rs1253945305 2845 dbSNP
rs968653900 2847 dbSNP
rs1017730097 2860 dbSNP
rs1376914519 2863 dbSNP
rs1297749590 2869 dbSNP
rs200399300 2871 dbSNP
rs1008051322 2873 dbSNP
rs1456867797 2882 dbSNP
rs1221065589 2883 dbSNP
rs576994215 2898 dbSNP
rs544852084 2902 dbSNP
rs889658042 2910 dbSNP
rs1051386225 2912 dbSNP
rs997987887 2914 dbSNP
rs1223972071 2915 dbSNP
rs760566168 2917 dbSNP
rs1477094010 2925 dbSNP
rs1187798317 2928 dbSNP
rs746855606 2930 dbSNP
rs1273321139 2933 dbSNP
rs1232736818 2937 dbSNP
rs906988443 2950 dbSNP
rs1367294177 2951 dbSNP
rs1425075774 2952 dbSNP
rs1297294560 2957 dbSNP
rs1358570047 2966 dbSNP
rs1044531587 2967 dbSNP
rs1036910056 2979 dbSNP
rs1362720386 2979 dbSNP
rs941042945 2986 dbSNP
rs538821186 2988 dbSNP
rs893377453 2990 dbSNP
rs543499881 2993 dbSNP
rs1247188668 3002 dbSNP
rs1328069057 3006 dbSNP
rs1285708718 3009 dbSNP
rs1054717843 3012 dbSNP
rs1218534512 3013 dbSNP
rs577507882 3016 dbSNP
rs934623279 3030 dbSNP
rs191292251 3044 dbSNP
rs1410078109 3048 dbSNP
rs1386725651 3056 dbSNP
rs540454420 3069 dbSNP
rs770747208 3073 dbSNP
rs948456748 3074 dbSNP
rs573116872 3077 dbSNP
rs1402422149 3078 dbSNP
rs986822867 3082 dbSNP
rs577702016 3083 dbSNP
rs916982908 3088 dbSNP
rs934050149 3090 dbSNP
rs1438185518 3096 dbSNP
rs1238133533 3098 dbSNP
rs1385288377 3101 dbSNP
rs1453617253 3102 dbSNP
rs73884558 3112 dbSNP
rs1351946148 3114 dbSNP
rs1226044177 3115 dbSNP
rs956174986 3116 dbSNP
rs1276511345 3119 dbSNP
rs1199939150 3122 dbSNP
rs964576305 3127 dbSNP
rs1207445006 3131 dbSNP
rs924871241 3135 dbSNP
rs1244404620 3144 dbSNP
rs1282716606 3145 dbSNP
rs1016559670 3151 dbSNP
rs186293581 3152 dbSNP
rs568793598 3169 dbSNP
rs1424388367 3172 dbSNP
rs1278915705 3179 dbSNP
rs1025920796 3181 dbSNP
rs968727434 3183 dbSNP
rs1330929191 3190 dbSNP
rs773069869 3193 dbSNP
rs1334140803 3195 dbSNP
rs181510310 3198 dbSNP
rs1280457663 3201 dbSNP
rs4821838 3206 dbSNP
rs538919790 3212 dbSNP
rs1022711033 3215 dbSNP
rs571591114 3216 dbSNP
rs1413604345 3223 dbSNP
rs1375723126 3227 dbSNP
rs546799033 3228 dbSNP
rs745854620 3232 dbSNP
rs998020411 3233 dbSNP
rs896986687 3240 dbSNP
rs1036983494 3241 dbSNP
rs903465826 3244 dbSNP
rs1159658472 3245 dbSNP
rs1005458775 3247 dbSNP
rs888142253 3256 dbSNP
rs1431627768 3258 dbSNP
rs528264050 3262 dbSNP
rs1470347328 3265 dbSNP
rs1236218126 3267 dbSNP
rs1186996006 3270 dbSNP
rs777992858 3271 dbSNP
rs1169992260 3273 dbSNP
rs567494376 3275 dbSNP
rs1394638640 3280 dbSNP
rs879489678 3285 dbSNP
rs1051085828 3291 dbSNP
rs1349637242 3294 dbSNP
rs1403696279 3302 dbSNP
rs1285743086 3310 dbSNP
rs1214671289 3313 dbSNP
rs1351235606 3332 dbSNP
rs1044472869 3344 dbSNP
rs1283375244 3355 dbSNP
rs948385105 3358 dbSNP
rs1288956259 3359 dbSNP
rs916995129 3360 dbSNP
rs1224354714 3364 dbSNP
rs143411544 3366 dbSNP
rs115969818 3367 dbSNP
rs901031561 3370 dbSNP
rs752838880 3374 dbSNP
rs1371378985 3375 dbSNP
rs1476539328 3378 dbSNP
rs979014966 3380 dbSNP
rs11704200 3381 dbSNP
rs910773936 3384 dbSNP
rs1319462133 3399 dbSNP
rs1305278707 3400 dbSNP
rs986542601 3408 dbSNP
rs80285208 3409 dbSNP
rs532820673 3412 dbSNP
rs971041142 3421 dbSNP
rs139483620 3427 dbSNP
rs1283240227 3430 dbSNP
rs972134145 3435 dbSNP
rs1420045790 3436 dbSNP
rs1191588049 3448 dbSNP
rs961228258 3460 dbSNP
rs1015417805 3464 dbSNP
rs1012681236 3467 dbSNP
rs1487946270 3475 dbSNP
rs1242890289 3479 dbSNP
rs755257120 3480 dbSNP
rs1216282448 3481 dbSNP
rs1259807628 3484 dbSNP
rs1448806055 3492 dbSNP
rs1448475715 3494 dbSNP
rs1193902066 3497 dbSNP
rs751957156 3506 dbSNP
rs1287668960 3508 dbSNP
rs888375262 3509 dbSNP
rs868415464 3510 dbSNP
rs1212927453 3514 dbSNP
rs374524085 3515 dbSNP
rs999463227 3519 dbSNP
rs189698881 3520 dbSNP
rs1419686287 3525 dbSNP
rs1051349015 3530 dbSNP
rs1387691771 3543 dbSNP
rs1382313068 3553 dbSNP
rs1360901585 3561 dbSNP
rs1332880944 3562 dbSNP
rs1270382912 3564 dbSNP
rs998150728 3569 dbSNP
rs1454220005 3570 dbSNP
rs1433371395 3573 dbSNP
rs1352693237 3574 dbSNP
rs371354765 3578 dbSNP
rs895481912 3583 dbSNP
rs1351236387 3588 dbSNP
rs1325846693 3598 dbSNP
rs1056845660 3603 dbSNP
rs185227121 3606 dbSNP
rs11539200 3610 dbSNP
rs941433419 3620 dbSNP
rs766712120 3621 dbSNP
rs747612288 3623 dbSNP
rs1180035988 3626 dbSNP
rs1366082664 3628 dbSNP
rs1397304679 3629 dbSNP
rs1454728754 3630 dbSNP
rs181746021 3632 dbSNP
rs903387432 3633 dbSNP
rs1427958350 3635 dbSNP
rs1470786976 3637 dbSNP
rs570890787 3638 dbSNP
rs1043216787 3640 dbSNP
rs189329970 3643 dbSNP
rs1375611116 3645 dbSNP
rs1389470355 3658 dbSNP
rs919137737 3659 dbSNP
rs1250833820 3660 dbSNP
rs910795975 3662 dbSNP
rs1321502086 3666 dbSNP
rs575289908 3673 dbSNP
rs933349650 3681 dbSNP
rs1480402520 3699 dbSNP
rs41274551 3707 dbSNP
rs1253069592 3716 dbSNP
rs1420258783 3719 dbSNP
rs1274950008 3720 dbSNP
rs991586723 3724 dbSNP
rs185161874 3729 dbSNP
rs1273302479 3733 dbSNP
rs568874641 3734 dbSNP
rs1399116989 3735 dbSNP
rs1016329317 3737 dbSNP
rs1460115674 3738 dbSNP
rs1299707014 3759 dbSNP
rs1396912508 3760 dbSNP
rs984369054 3771 dbSNP
rs181770280 3777 dbSNP
rs1281304776 3784 dbSNP
rs374685575 3790 dbSNP
rs998983451 3792 dbSNP
rs1023343530 3810 dbSNP
rs1260172101 3812 dbSNP
rs1442060870 3813 dbSNP
rs1283961300 3814 dbSNP
rs1307179224 3820 dbSNP
rs12628058 3833 dbSNP
rs1202771324 3839 dbSNP
rs7288826 3840 dbSNP
rs757635843 3843 dbSNP
rs567430785 3845 dbSNP
rs998454824 3848 dbSNP
rs1267391558 3849 dbSNP
rs763814483 3852 dbSNP
rs1329850625 3857 dbSNP
rs1461574681 3861 dbSNP
rs998455810 3864 dbSNP
rs1355121700 3867 dbSNP
rs900106736 3872 dbSNP
rs1039697147 3873 dbSNP
rs1006002455 3874 dbSNP
rs1172071075 3878 dbSNP
rs113428833 3886 dbSNP
rs1042745696 3890 dbSNP
rs1457229793 3899 dbSNP
rs1301013891 3901 dbSNP
rs947581037 3915 dbSNP
rs1367408105 3925 dbSNP
rs1405453122 3932 dbSNP
rs1394697827 3939 dbSNP
rs1262969263 3943 dbSNP
rs150740526 3945 dbSNP
rs1454532021 3972 dbSNP
rs1361348598 3981 dbSNP
rs1051146233 3984 dbSNP
rs933569633 3989 dbSNP
rs1308235644 3990 dbSNP
rs1245726337 3991 dbSNP
rs1289991925 4001 dbSNP
rs547156429 4007 dbSNP
rs1223847498 4028 dbSNP
rs923492702 4030 dbSNP
rs141210982 4031 dbSNP
rs1345351344 4033 dbSNP
rs1161487925 4040 dbSNP
rs949953671 4040 dbSNP
rs1386838538 4042 dbSNP
rs374412412 4045 dbSNP
rs775337431 4046 dbSNP
rs1343297029 4050 dbSNP
rs569281343 4051 dbSNP
rs190364656 4053 dbSNP
rs977180344 4054 dbSNP
rs1452145155 4055 dbSNP
rs150781094 4055 dbSNP
rs967513293 4055 dbSNP
rs1307717936 4056 dbSNP
rs915734738 4057 dbSNP
rs991841310 4058 dbSNP
rs964321204 4063 dbSNP
rs1217354713 4064 dbSNP
rs749453988 4065 dbSNP
rs745766662 4068 dbSNP
rs1045530280 4072 dbSNP
rs1181358734 4072 dbSNP
rs138892990 4072 dbSNP
rs780950456 4072 dbSNP
rs888455565 4072 dbSNP
rs906651285 4072 dbSNP
rs1161420799 4074 dbSNP
rs564938593 4081 dbSNP
rs530880390 4083 dbSNP
rs949925814 4083 dbSNP
rs1334964331 4093 dbSNP
rs1035535305 4104 dbSNP
rs1279298103 4106 dbSNP
rs374020590 4108 dbSNP
rs1371862002 4116 dbSNP
rs1225953709 4128 dbSNP
rs1284419128 4144 dbSNP
rs1056125785 4147 dbSNP
rs1375119393 4148 dbSNP
rs570884644 4151 dbSNP
rs998477075 4156 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb HITS-CLIP data was present in GSM1084068. RNA binding protein: AGO2. Condition:CLIP_noemetine_SigmaAb HITS-CLIP data was present in GSM1084069. RNA binding protein: AGO2. Condition:CLIP_emetine_SigmaAb HITS-CLIP data was present in GSM1084073. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep1_AbnovaAb HITS-CLIP data was present in GSM1084078. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_AbnovaAb HITS-CLIP data was present in GSM1084079. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000333039.2 | 3UTR | AACUGAGGAGGUGGAGGUUGCAGUGAGCCGAGAUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084068
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_SigmaAb
Location of target site ENST00000333039.2 | 3UTR | UGAGGAGGUGGAGGUUGCAGUGAGCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084069
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_SigmaAb
Location of target site ENST00000333039.2 | 3UTR | AACUGAGGAGGUGGAGGUUGCAGUGAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1084073
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep1_AbnovaAb
Location of target site ENST00000333039.2 | 3UTR | AACUGAGGAGGUGGAGGUUGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM1084078
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep2_AbnovaAb
Location of target site ENST00000333039.2 | 3UTR | UGAGGAGGUGGAGGUUGCAGUGAGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM1084079
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_AbnovaAb
Location of target site ENST00000333039.2 | 3UTR | AACUGAGGAGGUGGAGGUUGCAGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
184 hsa-miR-1306-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT089458 TET3 tet methylcytosine dioxygenase 3 2 2
MIRT167143 LHFPL2 LHFPL tetraspan subfamily member 2 2 2
MIRT290873 BCL10 B-cell CLL/lymphoma 10 2 2
MIRT320237 CYCS cytochrome c, somatic 2 2
MIRT462980 ZNF784 zinc finger protein 784 2 2
MIRT478039 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT479102 CNNM4 cyclin and CBS domain divalent metal cation transport mediator 4 2 4
MIRT482763 TMEM126B transmembrane protein 126B 2 2
MIRT489972 MCC mutated in colorectal cancers 2 4
MIRT495484 TNFAIP2 TNF alpha induced protein 2 2 2
MIRT496148 GPS1 G protein pathway suppressor 1 2 2
MIRT523370 GSR glutathione-disulfide reductase 2 2
MIRT526299 SORCS2 sortilin related VPS10 domain containing receptor 2 2 4
MIRT527427 NRL neural retina leucine zipper 2 2
MIRT527860 SMOC1 SPARC related modular calcium binding 1 2 6
MIRT529685 FBXL19 F-box and leucine rich repeat protein 19 2 2
MIRT531526 NOM1 nucleolar protein with MIF4G domain 1 2 2
MIRT532461 PLGRKT plasminogen receptor with a C-terminal lysine 2 2
MIRT532519 KCNN1 potassium calcium-activated channel subfamily N member 1 2 2
MIRT532668 APOBEC3D apolipoprotein B mRNA editing enzyme catalytic subunit 3D 2 2
MIRT532718 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT533205 WAPAL WAPL cohesin release factor 2 2
MIRT536480 KIAA1549 KIAA1549 2 2
MIRT537158 GID8 GID complex subunit 8 homolog 2 2
MIRT539307 AKIRIN1 akirin 1 2 2
MIRT539569 CNKSR3 CNKSR family member 3 2 4
MIRT540045 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT540235 SAMD5 sterile alpha motif domain containing 5 2 2
MIRT543016 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT551436 F2 coagulation factor II, thrombin 2 2
MIRT556146 MED12L mediator complex subunit 12 like 2 2
MIRT570714 DGKE diacylglycerol kinase epsilon 2 2
MIRT572037 GRWD1 glutamate rich WD repeat containing 1 2 2
MIRT572409 MRPS14 mitochondrial ribosomal protein S14 2 2
MIRT572660 AGMAT agmatinase 2 4
MIRT611450 NRIP3 nuclear receptor interacting protein 3 2 2
MIRT611601 JAKMIP3 Janus kinase and microtubule interacting protein 3 2 4
MIRT612208 TMEM109 transmembrane protein 109 2 2
MIRT612312 VSIG10 V-set and immunoglobulin domain containing 10 2 2
MIRT614146 MAFK MAF bZIP transcription factor K 2 2
MIRT617371 C21orf62 chromosome 21 open reading frame 62 2 2
MIRT617689 MAPKBP1 mitogen-activated protein kinase binding protein 1 2 2
MIRT618495 DENND5B DENN domain containing 5B 2 4
MIRT618802 SPATA21 spermatogenesis associated 21 2 2
MIRT619061 TTC4 tetratricopeptide repeat domain 4 2 2
MIRT619902 NPTXR neuronal pentraxin receptor 2 2
MIRT620080 DZIP1L DAZ interacting zinc finger protein 1 like 2 2
MIRT622233 SLC25A45 solute carrier family 25 member 45 2 2
MIRT625262 ZNF566 zinc finger protein 566 2 2
MIRT625725 CXorf38 chromosome X open reading frame 38 2 2
MIRT625813 POFUT1 protein O-fucosyltransferase 1 2 2
MIRT625839 NXPE2 neurexophilin and PC-esterase domain family member 2 2 2
MIRT626024 XRCC2 X-ray repair cross complementing 2 2 2
MIRT626054 PDE4C phosphodiesterase 4C 2 2
MIRT626082 CWF19L1 CWF19 like 1, cell cycle control (S. pombe) 2 2
MIRT626356 PACS1 phosphofurin acidic cluster sorting protein 1 2 2
MIRT626790 KCNK6 potassium two pore domain channel subfamily K member 6 2 2
MIRT627797 RAB11FIP1 RAB11 family interacting protein 1 2 2
MIRT628234 FAM212B family with sequence similarity 212 member B 2 2
MIRT628241 FADS1 fatty acid desaturase 1 2 2
MIRT628249 ETF1 eukaryotic translation termination factor 1 2 2
MIRT628799 A2ML1 alpha-2-macroglobulin like 1 2 2
MIRT628879 FAM177A1 family with sequence similarity 177 member A1 2 4
MIRT629333 ZNF487P zinc finger protein 487 1 1
MIRT629435 RPL34 ribosomal protein L34 2 2
MIRT629977 MRPL36 mitochondrial ribosomal protein L36 2 2
MIRT630727 FPR1 formyl peptide receptor 1 2 2
MIRT630776 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT631074 ZNF829 zinc finger protein 829 2 2
MIRT633139 C6orf132 chromosome 6 open reading frame 132 2 2
MIRT633178 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT633510 RNF14 ring finger protein 14 2 2
MIRT633613 APCDD1 APC down-regulated 1 2 2
MIRT633668 MYO1F myosin IF 2 2
MIRT633707 LRRC8B leucine rich repeat containing 8 VRAC subunit B 2 2
MIRT633798 SOX7 SRY-box 7 2 2
MIRT634203 TMOD2 tropomodulin 2 2 4
MIRT634297 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT634509 NYAP2 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 2 2
MIRT634518 NKAP NFKB activating protein 2 2
MIRT634754 CRCP CGRP receptor component 2 2
MIRT635741 IFNAR1 interferon alpha and beta receptor subunit 1 2 2
MIRT636480 KLHL7 kelch like family member 7 2 2
MIRT637042 FITM2 fat storage inducing transmembrane protein 2 2 2
MIRT637748 POLR3K RNA polymerase III subunit K 2 2
MIRT638568 IFNE interferon epsilon 2 2
MIRT639155 TMEM167A transmembrane protein 167A 2 2
MIRT639848 ZBTB20 zinc finger and BTB domain containing 20 2 2
MIRT641770 ZNF207 zinc finger protein 207 2 2
MIRT642285 ZNF99 zinc finger protein 99 2 2
MIRT642685 KRT74 keratin 74 2 2
MIRT643530 ERAP2 endoplasmic reticulum aminopeptidase 2 2 2
MIRT643742 ZNF284 zinc finger protein 284 2 4
MIRT643945 WIPF3 WAS/WASL interacting protein family member 3 2 2
MIRT644320 NFKBID NFKB inhibitor delta 2 2
MIRT644383 ZNF286A zinc finger protein 286A 2 2
MIRT645130 HES2 hes family bHLH transcription factor 2 2 2
MIRT645607 PCDH11X protocadherin 11 X-linked 2 2
MIRT647121 ZNF446 zinc finger protein 446 2 2
MIRT648484 CMBL carboxymethylenebutenolidase homolog 2 2
MIRT648549 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT649252 TRIM65 tripartite motif containing 65 2 2
MIRT649468 SLC10A7 solute carrier family 10 member 7 2 2
MIRT650013 KLB klotho beta 2 2
MIRT650068 CCDC134 coiled-coil domain containing 134 2 2
MIRT650325 RTN2 reticulon 2 2 2
MIRT651093 ZNF516 zinc finger protein 516 2 2
MIRT651265 ZKSCAN4 zinc finger with KRAB and SCAN domains 4 2 2
MIRT651272 ZKSCAN1 zinc finger with KRAB and SCAN domains 1 2 2
MIRT651402 ZBTB16 zinc finger and BTB domain containing 16 2 2
MIRT652163 TRIM66 tripartite motif containing 66 2 2
MIRT653153 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 2 2
MIRT653477 SLC4A1 solute carrier family 4 member 1 (Diego blood group) 2 2
MIRT653922 SERPINC1 serpin family C member 1 2 2
MIRT654243 RNF115 ring finger protein 115 2 2
MIRT655354 PCDH11Y protocadherin 11 Y-linked 2 2
MIRT655958 NDST1 N-deacetylase and N-sulfotransferase 1 2 2
MIRT656318 MESDC1 talin rod domain containing 1 2 2
MIRT656578 LSM10 LSM10, U7 small nuclear RNA associated 2 2
MIRT657210 IKZF2 IKAROS family zinc finger 2 2 2
MIRT657856 GJB1 gap junction protein beta 1 2 2
MIRT658207 FBXO44 F-box protein 44 2 2
MIRT659003 DIAPH1 diaphanous related formin 1 2 2
MIRT659349 CSRP1 cysteine and glycine rich protein 1 2 2
MIRT659501 CISD3 CDGSH iron sulfur domain 3 2 2
MIRT659761 CCDC171 coiled-coil domain containing 171 2 2
MIRT660149 BRD4 bromodomain containing 4 2 2
MIRT661582 EPHX2 epoxide hydrolase 2 2 2
MIRT661753 ATM ATM serine/threonine kinase 2 2
MIRT662223 CCRL2 C-C motif chemokine receptor like 2 2 2
MIRT663883 CXorf56 chromosome X open reading frame 56 2 2
MIRT664308 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT664649 GALM galactose mutarotase 2 2
MIRT664671 L2HGDH L-2-hydroxyglutarate dehydrogenase 2 2
MIRT665050 C3 complement C3 2 2
MIRT666467 SCRG1 stimulator of chondrogenesis 1 2 2
MIRT666529 RNF170 ring finger protein 170 2 2
MIRT669118 CDC42BPG CDC42 binding protein kinase gamma 2 2
MIRT669311 C17orf75 chromosome 17 open reading frame 75 2 2
MIRT669358 BHLHE22 basic helix-loop-helix family member e22 2 2
MIRT669691 ABLIM1 actin binding LIM protein 1 2 2
MIRT674223 FAM120AOS family with sequence similarity 120A opposite strand 2 2
MIRT674766 QRSL1 glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1 2 2
MIRT675207 ZNF554 zinc finger protein 554 2 2
MIRT675271 ZNF431 zinc finger protein 431 2 2
MIRT676265 PBOV1 prostate and breast cancer overexpressed 1 2 2
MIRT676573 VSIG1 V-set and immunoglobulin domain containing 1 2 2
MIRT677566 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT677631 ALG1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase 2 2
MIRT678115 MICA MHC class I polypeptide-related sequence A 2 2
MIRT678694 RNF157 ring finger protein 157 2 2
MIRT679583 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT679621 MED28 mediator complex subunit 28 2 2
MIRT683700 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT683721 LACTB lactamase beta 2 2
MIRT690967 APOL1 apolipoprotein L1 2 2
MIRT691611 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT702524 KCND3 potassium voltage-gated channel subfamily D member 3 2 2
MIRT704762 CDKN2AIPNL CDKN2A interacting protein N-terminal like 2 2
MIRT708738 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT708898 SKIDA1 SKI/DACH domain containing 1 2 2
MIRT709965 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT710373 GM2A GM2 ganglioside activator 2 2
MIRT710533 TMEM201 transmembrane protein 201 2 2
MIRT710582 HLCS holocarboxylase synthetase 2 2
MIRT711030 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT712200 SHROOM4 shroom family member 4 2 2
MIRT713798 CPLX2 complexin 2 2 2
MIRT714096 ZNF486 zinc finger protein 486 2 2
MIRT714923 PPP1R12C protein phosphatase 1 regulatory subunit 12C 2 2
MIRT716518 TNPO2 transportin 2 2 2
MIRT716701 HLA-B major histocompatibility complex, class I, B 2 2
MIRT717070 MTMR6 myotubularin related protein 6 2 2
MIRT719561 CBL Cbl proto-oncogene 2 2
MIRT719688 ALDH1L2 aldehyde dehydrogenase 1 family member L2 2 2
MIRT720134 RIMKLA ribosomal modification protein rimK like family member A 2 2
MIRT720222 IPPK inositol-pentakisphosphate 2-kinase 2 2
MIRT720982 METTL21A methyltransferase like 21A 2 2
MIRT723821 PDS5A PDS5 cohesin associated factor A 2 2
MIRT723999 LMTK2 lemur tyrosine kinase 2 2 2
MIRT724963 PTK6 protein tyrosine kinase 6 2 2
MIRT725217 PEA15 phosphoprotein enriched in astrocytes 15 2 2
MIRT725262 PARVB parvin beta 2 2
MIRT755883 METTL14 methyltransferase like 14 3 1
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-1306 Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-mir-1306 Fluorouracil 3385 NSC19893 approved resistant cell line (KYSE)
hsa-miR-1306-5p Imatinib 5291 NSC743414 approved resistant High Chronic Myelogenous Leukemia tissue
hsa-miR-1306-5p Paclitaxel 36314 NSC125973 approved sensitive cell line (HS578T)
hsa-miR-1306-5p Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-1306-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-1306-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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