miRTarBase - #MIRT620179


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pre-miRNA Information
pre-miRNA hsa-mir-640   
Genomic Coordinates chr19: 19435063 - 19435158
Synonyms MIRN640, hsa-mir-640, MIR640
Description Homo sapiens miR-640 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-640
Sequence 61| AUGAUCCAGGAACCUGCCUCU |81
Evidence Experimental
Experiments RT-PCR
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30153378 1 COSMIC
COSN23015356 12 COSMIC
COSN30513185 19 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs111726405 1 dbSNP
rs765622881 2 dbSNP
rs1249744889 6 dbSNP
rs752995186 12 dbSNP
rs758746736 13 dbSNP
rs918887970 19 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TRIM72   
Synonyms MG53
Description tripartite motif containing 72
Transcript NM_001008274   
Expression
Putative miRNA Targets on TRIM72
3'UTR of TRIM72
(miRNA target sites are highlighted)		 
>TRIM72|NM_001008274|3'UTR
   1 GCCGCCGGACGGGTAGTGGAGGGGCGCGGGGGCCTGGGTTGAAGCTTAGGTCTCCTTGGTCGGGTCTGACGGGAGAAGGG
  81 TGGGGAGCGGGTTGCCAGGGCCCAGGGGGCTGGGAACTGGGGGATCTCCCAGAATACTGACAAGCGTGGGGTAGGACTGG
 161 CTTGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGACGGAGGCGGGTGGATCACCTGAGGTCAGGAGTTCAAGACCA
 241 GCCTGGCCAACATGGTGAAACTCCTCTCTACTGAAAATACAAAAATGAGCTGGGCGCGGTGGCATACGCCTGTAATCCCA
 321 GCTAGTTGGGAGGCTGAGGCAGGATAATTGCTTGAACCCAGGAGGTGGAGGTTGCAGTGAGCAGACATTGCGGCACTGCA
 401 CTCTAGCCTGGGTGACAAGAGTGAGACTCTGTCT
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ucUCCGUCCAAGGACCUAGUa 5'
            ||||:||    ||||||| 
Target 5' ggAGGCGGG----TGGATCAc 3'
 201 - 217 157.00 -21.90
2 
miRNA  3' ucUCC-GUCC-AAGGACCUAGUa 5'
            ||| | || ||  ||| ||| 
Target 5' gtAGGACTGGCTTGGTGGCTCAt 3'
 151 - 173 123.00 -11.10
3 
miRNA  3' ucucCGUCCAAGGACCUAGUa 5'
              ||:||  |||||:|:: 
Target 5' gggcGCGGGGGCCTGGGTTGa 3'
 22 - 42 117.00 -22.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN27000044 4 COSMIC
COSN1697225 8 COSMIC
COSN27042587 44 COSMIC
COSN19677902 62 COSMIC
COSN15718630 131 COSMIC
COSN24149748 201 COSMIC
COSN17580885 207 COSMIC
COSN1185377 269 COSMIC
COSN28244331 451 COSMIC
COSN19068244 528 COSMIC
COSN22545681 1155 COSMIC
COSN27193070 1218 COSMIC
COSN20242304 1247 COSMIC
COSN8497766 1408 COSMIC
COSN16414964 1434 COSMIC
COSN7304356 1434 COSMIC
COSN24572435 1772 COSMIC
COSN6083737 2102 COSMIC
COSN9645544 2103 COSMIC
COSN29135974 2111 COSMIC
COSN21100546 2368 COSMIC
COSN6645373 2510 COSMIC
COSN8497767 2551 COSMIC
COSN8497768 2725 COSMIC
COSN8231636 2904 COSMIC
COSN9645545 2968 COSMIC
COSN5406444 3287 COSMIC
COSN9645546 3306 COSMIC
COSN23541797 3857 COSMIC
COSN16119693 3904 COSMIC
COSN6083738 4538 COSMIC
COSN7304357 4814 COSMIC
COSN24721589 5131 COSMIC
COSN26632257 5462 COSMIC
COSN23002169 5471 COSMIC
COSN21122058 5932 COSMIC
COSN7304358 6028 COSMIC
COSN5759764 6045 COSMIC
COSN21344965 6220 COSMIC
COSN8231637 6355 COSMIC
COSN26609440 6419 COSMIC
COSN21806848 6652 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1316026147 1 dbSNP
rs1475908233 4 dbSNP
rs776543382 5 dbSNP
rs1273329541 6 dbSNP
rs747869827 7 dbSNP
rs1169469689 8 dbSNP
rs1189134561 9 dbSNP
rs769474036 11 dbSNP
rs1428693539 13 dbSNP
rs1193434653 16 dbSNP
rs1421850077 21 dbSNP
rs772809141 23 dbSNP
rs1166270533 24 dbSNP
rs1041862866 26 dbSNP
rs1349441134 29 dbSNP
rs1456429606 30 dbSNP
rs928444529 33 dbSNP
rs762467064 36 dbSNP
rs558709120 37 dbSNP
rs1225442786 40 dbSNP
rs1277338328 41 dbSNP
rs999457463 47 dbSNP
rs376087760 48 dbSNP
rs1235130311 49 dbSNP
rs529804781 54 dbSNP
rs879302837 60 dbSNP
rs1434480992 61 dbSNP
rs1302948788 62 dbSNP
rs879742098 72 dbSNP
rs1442500295 73 dbSNP
rs1394495684 79 dbSNP
rs1297268121 82 dbSNP
rs762111520 83 dbSNP
rs995402430 90 dbSNP
rs1048270542 93 dbSNP
rs957920962 100 dbSNP
rs1004846176 109 dbSNP
rs1195350860 110 dbSNP
rs191694975 111 dbSNP
rs1237708411 118 dbSNP
rs1275789578 123 dbSNP
rs1481762903 131 dbSNP
rs1449371944 138 dbSNP
rs1233010154 140 dbSNP
rs1346116418 142 dbSNP
rs1023630584 149 dbSNP
rs1192472514 151 dbSNP
rs1235587206 163 dbSNP
rs969537108 163 dbSNP
rs1376798924 169 dbSNP
rs901958860 170 dbSNP
rs982564957 174 dbSNP
rs1253180493 176 dbSNP
rs1455325652 185 dbSNP
rs1398244216 201 dbSNP
rs928161889 202 dbSNP
rs962492641 207 dbSNP
rs1389291450 208 dbSNP
rs866292436 209 dbSNP
rs926425244 211 dbSNP
rs953499733 218 dbSNP
rs972306452 223 dbSNP
rs990411758 224 dbSNP
rs1179805608 227 dbSNP
rs920875670 237 dbSNP
rs1403617861 242 dbSNP
rs1251550737 246 dbSNP
rs751710870 253 dbSNP
rs1021848543 256 dbSNP
rs1325325758 263 dbSNP
rs1484905000 267 dbSNP
rs547954202 273 dbSNP
rs1282989383 281 dbSNP
rs930889852 288 dbSNP
rs1048088418 296 dbSNP
rs1443333161 298 dbSNP
rs1236284922 299 dbSNP
rs1336976233 301 dbSNP
rs183982300 303 dbSNP
rs527400773 306 dbSNP
rs942475430 307 dbSNP
rs1326195634 308 dbSNP
rs750673073 309 dbSNP
rs1353175901 343 dbSNP
rs1228696254 359 dbSNP
rs552766395 361 dbSNP
rs999385356 362 dbSNP
rs1384186857 381 dbSNP
rs1156700420 389 dbSNP
rs571062764 392 dbSNP
rs1052253140 393 dbSNP
rs1364400567 412 dbSNP
rs1354878669 414 dbSNP
rs1212471302 417 dbSNP
rs1273303263 423 dbSNP
rs1469450777 425 dbSNP
rs1206419079 427 dbSNP
rs1187298594 432 dbSNP
rs1474389592 433 dbSNP
rs1259842444 434 dbSNP
rs1282808475 435 dbSNP
rs1491196927 435 dbSNP
rs67787720 435 dbSNP
rs752200233 435 dbSNP
rs762988166 435 dbSNP
rs1491179871 436 dbSNP
rs564754852 436 dbSNP
rs60490361 436 dbSNP
rs869303641 436 dbSNP
rs9939502 436 dbSNP
rs117925810 437 dbSNP
rs796183690 438 dbSNP
rs1428894621 439 dbSNP
rs1195069891 440 dbSNP
rs1366592036 445 dbSNP
rs928276774 446 dbSNP
rs1472442730 449 dbSNP
rs1178932600 450 dbSNP
rs1418633434 452 dbSNP
rs1463131880 454 dbSNP
rs1383913421 458 dbSNP
rs1385577903 459 dbSNP
rs1318780940 460 dbSNP
rs1384531055 461 dbSNP
rs1383070250 466 dbSNP
rs1164357223 468 dbSNP
rs1459923723 469 dbSNP
rs1320719217 475 dbSNP
rs1339187195 483 dbSNP
rs1165877265 484 dbSNP
rs1475295439 488 dbSNP
rs1233177114 489 dbSNP
rs1195773856 490 dbSNP
rs938470805 492 dbSNP
rs1267246766 496 dbSNP
rs1294495203 497 dbSNP
rs893759556 500 dbSNP
rs1274664972 501 dbSNP
rs1336291610 504 dbSNP
rs1338331506 505 dbSNP
rs1226113804 509 dbSNP
rs1268271807 512 dbSNP
rs1010824209 514 dbSNP
rs1327008312 520 dbSNP
rs1259716521 521 dbSNP
rs188949092 543 dbSNP
rs538538686 550 dbSNP
rs550491149 552 dbSNP
rs569938732 557 dbSNP
rs191426245 570 dbSNP
rs1417596989 573 dbSNP
rs370445863 588 dbSNP
rs887069706 598 dbSNP
rs1170054449 610 dbSNP
rs1475918261 611 dbSNP
rs766415248 612 dbSNP
rs1267669670 614 dbSNP
rs1035490616 620 dbSNP
rs398078603 632 dbSNP
rs58396951 632 dbSNP
rs796269412 632 dbSNP
rs199498758 633 dbSNP
rs962090149 635 dbSNP
rs1221659760 637 dbSNP
rs372672047 637 dbSNP
rs375789825 638 dbSNP
rs972240797 639 dbSNP
rs1027777258 641 dbSNP
rs1029051111 648 dbSNP
rs1216136778 706 dbSNP
rs535871503 707 dbSNP
rs182109488 708 dbSNP
rs952300943 710 dbSNP
rs558711534 712 dbSNP
rs986313900 716 dbSNP
rs1231920671 720 dbSNP
rs1011793985 727 dbSNP
rs1363391427 736 dbSNP
rs1304307238 746 dbSNP
rs1441537788 746 dbSNP
rs1022205446 760 dbSNP
rs1331083123 761 dbSNP
rs1410880774 765 dbSNP
rs1375156150 773 dbSNP
rs967685583 780 dbSNP
rs910904836 783 dbSNP
rs553902761 793 dbSNP
rs976428619 810 dbSNP
rs572165274 821 dbSNP
rs1230852267 823 dbSNP
rs935059112 826 dbSNP
rs1357925153 828 dbSNP
rs186830525 829 dbSNP
rs1208421102 832 dbSNP
rs1279179781 833 dbSNP
rs893602454 835 dbSNP
rs946623327 845 dbSNP
rs1305708161 846 dbSNP
rs1371187312 852 dbSNP
rs1317028538 871 dbSNP
rs1281500547 872 dbSNP
rs1240712071 876 dbSNP
rs1311488949 876 dbSNP
rs1355053887 876 dbSNP
rs1045356755 878 dbSNP
rs866803866 881 dbSNP
rs1376620564 884 dbSNP
rs571151464 885 dbSNP
rs1405094630 888 dbSNP
rs1160718865 889 dbSNP
rs1173428243 889 dbSNP
rs1214914199 889 dbSNP
rs1229052360 889 dbSNP
rs1256521521 889 dbSNP
rs1286510435 889 dbSNP
rs1288815639 889 dbSNP
rs1315041420 889 dbSNP
rs1334503836 889 dbSNP
rs1347462556 889 dbSNP
rs1356430594 889 dbSNP
rs1417045009 889 dbSNP
rs1429316821 889 dbSNP
rs1457262105 889 dbSNP
rs1472736013 889 dbSNP
rs1486504810 889 dbSNP
rs913543700 889 dbSNP
rs1416752281 890 dbSNP
rs1211337012 891 dbSNP
rs1282304656 893 dbSNP
rs1243755252 894 dbSNP
rs1482044743 894 dbSNP
rs1209466910 895 dbSNP
rs1175516321 896 dbSNP
rs1249871277 897 dbSNP
rs1235310605 898 dbSNP
rs1419800661 899 dbSNP
rs1184237382 907 dbSNP
rs1364721969 908 dbSNP
rs1321758789 909 dbSNP
rs1435187415 910 dbSNP
rs1393023170 913 dbSNP
rs1393580246 915 dbSNP
rs1434419912 916 dbSNP
rs1174674847 917 dbSNP
rs1377753104 918 dbSNP
rs1428345001 929 dbSNP
rs1298150206 932 dbSNP
rs1365041307 936 dbSNP
rs73532249 939 dbSNP
rs1189060706 948 dbSNP
rs1468105630 952 dbSNP
rs1251285990 953 dbSNP
rs1215633526 963 dbSNP
rs1392694264 967 dbSNP
rs1488953910 967 dbSNP
rs1298655025 970 dbSNP
rs369044823 973 dbSNP
rs908357521 977 dbSNP
rs1299005468 994 dbSNP
rs576667175 1002 dbSNP
rs544159507 1003 dbSNP
rs1203707118 1011 dbSNP
rs1387984042 1014 dbSNP
rs747969300 1022 dbSNP
rs1041334716 1023 dbSNP
rs1251877070 1027 dbSNP
rs1460281904 1030 dbSNP
rs1480999856 1037 dbSNP
rs1197638159 1043 dbSNP
rs191667699 1044 dbSNP
rs373217335 1047 dbSNP
rs1194545170 1048 dbSNP
rs889240726 1079 dbSNP
rs1397243472 1081 dbSNP
rs147001836 1092 dbSNP
rs1043254745 1093 dbSNP
rs542348293 1097 dbSNP
rs993504760 1100 dbSNP
rs1283031718 1115 dbSNP
rs1234824428 1117 dbSNP
rs770569369 1123 dbSNP
rs1331112855 1125 dbSNP
rs1311915514 1130 dbSNP
rs1354948312 1136 dbSNP
rs1355629898 1137 dbSNP
rs1367249498 1140 dbSNP
rs1463020089 1141 dbSNP
rs952186925 1142 dbSNP
rs1308454924 1144 dbSNP
rs1284194664 1152 dbSNP
rs1484378354 1156 dbSNP
rs1433845778 1159 dbSNP
rs1393225127 1164 dbSNP
rs1201062265 1173 dbSNP
rs1255578630 1174 dbSNP
rs1423104220 1175 dbSNP
rs986418896 1179 dbSNP
rs1174178899 1181 dbSNP
rs1181748789 1184 dbSNP
rs1381923066 1185 dbSNP
rs12933692 1186 dbSNP
rs12934267 1187 dbSNP
rs1440133792 1190 dbSNP
rs1157639864 1191 dbSNP
rs1343028946 1194 dbSNP
rs1363352720 1195 dbSNP
rs1467277419 1195 dbSNP
rs1302856364 1202 dbSNP
rs1400956035 1203 dbSNP
rs1252782522 1205 dbSNP
rs1385311496 1205 dbSNP
rs1426467732 1205 dbSNP
rs999130226 1218 dbSNP
rs1305243830 1219 dbSNP
rs1362752420 1220 dbSNP
rs879848089 1221 dbSNP
rs1213846227 1224 dbSNP
rs1296130567 1225 dbSNP
rs1350576040 1226 dbSNP
rs1036319543 1230 dbSNP
rs1309200836 1231 dbSNP
rs1229644490 1244 dbSNP
rs966309147 1246 dbSNP
rs560201624 1247 dbSNP
rs1288537383 1255 dbSNP
rs1413943166 1279 dbSNP
rs1214536282 1285 dbSNP
rs1335919224 1291 dbSNP
rs1255197948 1304 dbSNP
rs1396602404 1319 dbSNP
rs922288866 1324 dbSNP
rs527336616 1327 dbSNP
rs1156948931 1331 dbSNP
rs1022577470 1333 dbSNP
rs1485058413 1340 dbSNP
rs952491983 1341 dbSNP
rs1420782593 1365 dbSNP
rs1164403863 1373 dbSNP
rs1474439239 1376 dbSNP
rs935068999 1382 dbSNP
rs552350186 1383 dbSNP
rs1446977310 1388 dbSNP
rs767658623 1404 dbSNP
rs1416498309 1405 dbSNP
rs148040599 1410 dbSNP
rs1327498410 1416 dbSNP
rs922552080 1417 dbSNP
rs1232356758 1418 dbSNP
rs1429699660 1420 dbSNP
rs1289257282 1424 dbSNP
rs1285773396 1425 dbSNP
rs946508711 1428 dbSNP
rs1316084325 1430 dbSNP
rs777219509 1433 dbSNP
rs1050447114 1436 dbSNP
rs1044886935 1437 dbSNP
rs141722798 1438 dbSNP
rs1393112680 1445 dbSNP
rs939280521 1446 dbSNP
rs1056871643 1452 dbSNP
rs1164253445 1456 dbSNP
rs1334244794 1456 dbSNP
rs897797809 1460 dbSNP
rs903360196 1461 dbSNP
rs1371884748 1462 dbSNP
rs993557301 1470 dbSNP
rs1315375479 1476 dbSNP
rs1450619973 1501 dbSNP
rs1248176117 1505 dbSNP
rs769169399 1506 dbSNP
rs1215468209 1513 dbSNP
rs999389479 1516 dbSNP
rs1466897502 1522 dbSNP
rs1057298054 1526 dbSNP
rs1210243855 1534 dbSNP
rs1338433585 1543 dbSNP
rs1268359992 1549 dbSNP
rs1243022939 1562 dbSNP
rs369814611 1565 dbSNP
rs1365836040 1568 dbSNP
rs1013107812 1570 dbSNP
rs1438780968 1572 dbSNP
rs184867988 1575 dbSNP
rs1324407230 1583 dbSNP
rs1409760314 1587 dbSNP
rs535790671 1597 dbSNP
rs1257515221 1611 dbSNP
rs547338402 1613 dbSNP
rs34296264 1620 dbSNP
rs1394854263 1623 dbSNP
rs1475213085 1626 dbSNP
rs952356324 1630 dbSNP
rs1394982292 1634 dbSNP
rs762299731 1638 dbSNP
rs565782610 1653 dbSNP
rs767905678 1657 dbSNP
rs1405290036 1665 dbSNP
rs1005311496 1669 dbSNP
rs1436851509 1690 dbSNP
rs1272294303 1695 dbSNP
rs1017762441 1700 dbSNP
rs966731420 1702 dbSNP
rs1232225731 1705 dbSNP
rs1369739643 1707 dbSNP
rs997737980 1708 dbSNP
rs1029338886 1720 dbSNP
rs956331072 1726 dbSNP
rs1441838005 1734 dbSNP
rs1334170262 1739 dbSNP
rs1310290793 1746 dbSNP
rs1410768645 1750 dbSNP
rs539537118 1751 dbSNP
rs190157384 1752 dbSNP
rs961153240 1760 dbSNP
rs915016917 1763 dbSNP
rs1426732671 1767 dbSNP
rs1172651452 1780 dbSNP
rs967809830 1783 dbSNP
rs981052524 1785 dbSNP
rs926438289 1788 dbSNP
rs150649303 1789 dbSNP
rs1415421315 1790 dbSNP
rs1208003398 1791 dbSNP
rs376193712 1799 dbSNP
rs1279466966 1802 dbSNP
rs1223268345 1805 dbSNP
rs538015287 1812 dbSNP
rs1290404216 1815 dbSNP
rs1223412440 1816 dbSNP
rs556098847 1817 dbSNP
rs985352443 1832 dbSNP
rs7192718 1845 dbSNP
rs1209184028 1846 dbSNP
rs541764457 1854 dbSNP
rs1280177078 1874 dbSNP
rs929334224 1875 dbSNP
rs1049041125 1881 dbSNP
rs1189403592 1884 dbSNP
rs887898306 1887 dbSNP
rs1360222113 1890 dbSNP
rs1334300411 1892 dbSNP
rs1399565707 1902 dbSNP
rs1409353836 1903 dbSNP
rs1160845364 1925 dbSNP
rs1472805571 1927 dbSNP
rs1230649818 1930 dbSNP
rs543666372 1946 dbSNP
rs1179866611 1954 dbSNP
rs1039610307 1958 dbSNP
rs1237932712 1964 dbSNP
rs1215192613 1968 dbSNP
rs1409710471 1978 dbSNP
rs1270265359 1981 dbSNP
rs1229306846 1990 dbSNP
rs1432566542 1993 dbSNP
rs924729639 2005 dbSNP
rs1172804388 2008 dbSNP
rs1375945177 2017 dbSNP
rs116023158 2018 dbSNP
rs1487917875 2026 dbSNP
rs1230367113 2029 dbSNP
rs998188727 2036 dbSNP
rs1270088733 2042 dbSNP
rs1031903037 2059 dbSNP
rs1321963523 2060 dbSNP
rs1441652100 2067 dbSNP
rs1393245061 2080 dbSNP
rs1280294305 2084 dbSNP
rs956257266 2085 dbSNP
rs948989733 2086 dbSNP
rs9922051 2089 dbSNP
rs1232492186 2091 dbSNP
rs1021967397 2092 dbSNP
rs374504148 2102 dbSNP
rs1468245302 2108 dbSNP
rs1041969745 2111 dbSNP
rs980513796 2112 dbSNP
rs1263855261 2120 dbSNP
rs926463455 2125 dbSNP
rs1189115327 2127 dbSNP
rs868042296 2129 dbSNP
rs760826118 2130 dbSNP
rs960548820 2137 dbSNP
rs28490272 2138 dbSNP
rs545899283 2141 dbSNP
rs896928498 2142 dbSNP
rs919207725 2143 dbSNP
rs1366505154 2147 dbSNP
rs929219704 2151 dbSNP
rs79037450 2154 dbSNP
rs909172849 2155 dbSNP
rs1350310593 2158 dbSNP
rs753867132 2161 dbSNP
rs755049260 2163 dbSNP
rs1169482110 2164 dbSNP
rs1427787156 2164 dbSNP
rs765404798 2165 dbSNP
rs953832059 2169 dbSNP
rs1436652775 2170 dbSNP
rs902026340 2172 dbSNP
rs1193080735 2174 dbSNP
rs1488923884 2181 dbSNP
rs73532252 2187 dbSNP
rs1203421607 2194 dbSNP
rs1053267775 2215 dbSNP
rs1344960040 2218 dbSNP
rs1275919540 2222 dbSNP
rs1228500751 2223 dbSNP
rs967988410 2233 dbSNP
rs1452217479 2237 dbSNP
rs149362539 2238 dbSNP
rs752721988 2245 dbSNP
rs1395432920 2249 dbSNP
rs1307236619 2268 dbSNP
rs1407716044 2272 dbSNP
rs1011797359 2275 dbSNP
rs1455467993 2278 dbSNP
rs1178535806 2281 dbSNP
rs562144938 2286 dbSNP
rs529586720 2310 dbSNP
rs924621289 2311 dbSNP
rs1166085381 2313 dbSNP
rs1178324473 2316 dbSNP
rs532477405 2320 dbSNP
rs1002380984 2321 dbSNP
rs1484201687 2328 dbSNP
rs1033461090 2343 dbSNP
rs1210866480 2344 dbSNP
rs917427107 2355 dbSNP
rs1253779665 2357 dbSNP
rs1234755464 2358 dbSNP
rs1312434958 2362 dbSNP
rs1287279646 2370 dbSNP
rs960725547 2372 dbSNP
rs991989252 2373 dbSNP
rs1044629202 2381 dbSNP
rs777452383 2387 dbSNP
rs1399947756 2393 dbSNP
rs1304680282 2394 dbSNP
rs1026104396 2401 dbSNP
rs888735197 2405 dbSNP
rs1466577641 2407 dbSNP
rs1411510708 2437 dbSNP
rs1157141675 2445 dbSNP
rs1413245674 2448 dbSNP
rs540925890 2448 dbSNP
rs984636746 2450 dbSNP
rs1037130579 2452 dbSNP
rs909216586 2455 dbSNP
rs1201708947 2459 dbSNP
rs1483253546 2460 dbSNP
rs1267119574 2464 dbSNP
rs1372173101 2488 dbSNP
rs1206501521 2489 dbSNP
rs566988391 2491 dbSNP
rs1330772581 2492 dbSNP
rs1288799228 2496 dbSNP
rs1243728304 2497 dbSNP
rs1029384697 2508 dbSNP
rs1314695170 2515 dbSNP
rs559303278 2522 dbSNP
rs975129985 2523 dbSNP
rs1459057355 2525 dbSNP
rs1389628321 2545 dbSNP
rs1163066898 2554 dbSNP
rs1268873347 2556 dbSNP
rs889627445 2558 dbSNP
rs1370709822 2565 dbSNP
rs1188787917 2574 dbSNP
rs923408746 2580 dbSNP
rs192971872 2582 dbSNP
rs1186093954 2587 dbSNP
rs1022129027 2600 dbSNP
rs1214604452 2609 dbSNP
rs1268322549 2612 dbSNP
rs1053284108 2613 dbSNP
rs1259392037 2613 dbSNP
rs10871455 2615 dbSNP
rs185676379 2616 dbSNP
rs10782003 2634 dbSNP
rs769357442 2642 dbSNP
rs1323066639 2651 dbSNP
rs1190777707 2655 dbSNP
rs1372382784 2657 dbSNP
rs917291381 2658 dbSNP
rs970111884 2659 dbSNP
rs1164197664 2661 dbSNP
rs1001907343 2662 dbSNP
rs980269895 2663 dbSNP
rs1033757897 2667 dbSNP
rs896278109 2668 dbSNP
rs1450715722 2687 dbSNP
rs1425848024 2693 dbSNP
rs1242349235 2697 dbSNP
rs774945803 2698 dbSNP
rs1325389838 2699 dbSNP
rs1026109585 2700 dbSNP
rs1210189535 2706 dbSNP
rs537156221 2707 dbSNP
rs1388835939 2708 dbSNP
rs1230708820 2712 dbSNP
rs748700024 2713 dbSNP
rs1274324279 2725 dbSNP
rs1326248698 2732 dbSNP
rs1432081241 2733 dbSNP
rs764728566 2746 dbSNP
rs774536758 2747 dbSNP
rs1369245639 2758 dbSNP
rs1170964833 2762 dbSNP
rs556279955 2764 dbSNP
rs1419691774 2768 dbSNP
rs1171448845 2769 dbSNP
rs974805134 2770 dbSNP
rs923262963 2771 dbSNP
rs1482567971 2776 dbSNP
rs1232155413 2779 dbSNP
rs1273364168 2780 dbSNP
rs1249548100 2788 dbSNP
rs918256421 2795 dbSNP
rs1278057811 2801 dbSNP
rs1217529678 2802 dbSNP
rs1347432229 2807 dbSNP
rs1275588869 2808 dbSNP
rs1228175698 2809 dbSNP
rs1349078910 2821 dbSNP
rs1310232258 2822 dbSNP
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rs536527913 6414 dbSNP
rs555326889 6415 dbSNP
rs1368374288 6418 dbSNP
rs369028577 6419 dbSNP
rs1040115502 6425 dbSNP
rs1477587265 6426 dbSNP
rs1332391607 6431 dbSNP
rs147016758 6436 dbSNP
rs900340841 6436 dbSNP
rs1054686932 6440 dbSNP
rs559000877 6465 dbSNP
rs1048217460 6478 dbSNP
rs572042449 6487 dbSNP
rs1239978072 6492 dbSNP
rs1177687725 6495 dbSNP
rs1010550496 6499 dbSNP
rs1020929514 6503 dbSNP
rs1198998618 6505 dbSNP
rs1287447114 6506 dbSNP
rs192918304 6512 dbSNP
rs576915923 6513 dbSNP
rs1212118110 6515 dbSNP
rs544738123 6516 dbSNP
rs1308605278 6517 dbSNP
rs563328305 6521 dbSNP
rs1236504060 6522 dbSNP
rs1483349442 6523 dbSNP
rs1310484858 6525 dbSNP
rs1395757430 6536 dbSNP
rs1377401996 6538 dbSNP
rs1305150962 6546 dbSNP
rs369340064 6554 dbSNP
rs1375535520 6559 dbSNP
rs901150063 6560 dbSNP
rs999506491 6561 dbSNP
rs1031531537 6563 dbSNP
rs958138135 6565 dbSNP
rs1028219515 6566 dbSNP
rs952351527 6571 dbSNP
rs983677643 6572 dbSNP
rs1183583421 6578 dbSNP
rs1382152753 6579 dbSNP
rs528121088 6581 dbSNP
rs185008580 6595 dbSNP
rs1214488953 6596 dbSNP
rs1356148723 6607 dbSNP
rs1287067846 6611 dbSNP
rs542493701 6617 dbSNP
rs1023767557 6618 dbSNP
rs975742013 6624 dbSNP
rs921734827 6636 dbSNP
rs969622624 6637 dbSNP
rs560821156 6639 dbSNP
rs1448958668 6647 dbSNP
rs775053556 6648 dbSNP
rs746169959 6660 dbSNP
rs1340410496 6665 dbSNP
rs79617170 6673 dbSNP
rs931710046 6683 dbSNP
rs1338951385 6684 dbSNP
rs372744075 6685 dbSNP
rs1361866019 6690 dbSNP
rs1375144559 6693 dbSNP
rs1457087465 6697 dbSNP
rs1366506947 6698 dbSNP
rs541339005 6699 dbSNP
rs1310599949 6708 dbSNP
rs1262322499 6732 dbSNP
rs559351457 6742 dbSNP
rs1191387699 6752 dbSNP
rs892936644 6756 dbSNP
rs1353520630 6759 dbSNP
rs1218011822 6769 dbSNP
rs1263992763 6772 dbSNP
rs1209484137 6773 dbSNP
rs945979509 6774 dbSNP
rs1267640536 6775 dbSNP
rs79076294 6780 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084044. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep3 HITS-CLIP data was present in GSM1084069. RNA binding protein: AGO2. Condition:CLIP_emetine_SigmaAb HITS-CLIP data was present in GSM1084079. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084044
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep3
Location of target site ENST00000322122.3 | 3UTR | AGACGGAGGCGGGUGGAUCACCUGAGGUCAGGAGUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084069
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_SigmaAb
Location of target site ENST00000322122.3 | 3UTR | AGACGGAGGCGGGUGGAUCACCUGAGGUCAGGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084079
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_AbnovaAb
Location of target site ENST00000322122.3 | 3UTR | AGACGGAGGCGGGUGGAUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE32688 Pancreatic cancer 0.473 3.1e-3 0.560 4.3e-4 32 Click to see details
GSE19350 CNS germ cell tumors -0.547 3.3e-2 -0.350 1.3e-1 12 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.332 5.2e-2 0.391 2.7e-2 25 Click to see details
GSE19536 Breast cancer 0.147 7.2e-2 0.159 5.7e-2 100 Click to see details
GSE19783 ER- ER- breast cancer 0.146 1.0e-1 0.179 5.7e-2 79 Click to see details
GSE38226 Liver fibrosis -0.284 1.1e-1 -0.231 1.6e-1 21 Click to see details
GSE21849 B cell lymphoma -0.188 1.6e-1 -0.002 5.0e-1 29 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis -0.206 1.9e-1 -0.359 6.0e-2 20 Click to see details
GSE17306 Multiple myeloma -0.122 2.0e-1 0.071 3.1e-1 49 Click to see details
GSE21687 Ependynoma primary tumors 0.101 2.1e-1 0.085 2.5e-1 64 Click to see details
GSE26953 Aortic valvular endothelial cells -0.153 2.4e-1 -0.141 2.6e-1 24 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.122 2.8e-1 0.213 1.5e-1 25 Click to see details
GSE28544 Breast cancer 0.078 3.6e-1 0.026 4.5e-1 24 Click to see details
GSE27834 Pluripotent stem cells -0.061 4.1e-1 -0.171 2.6e-1 16 Click to see details
GSE19783 ER+ ER+ breast cancer 0.051 4.2e-1 -0.026 4.6e-1 20 Click to see details
GSE14794 Lymphoblastoid cells 0.018 4.3e-1 -0.027 4.0e-1 90 Click to see details
GSE28260 Renal cortex and medulla -0.042 4.5e-1 -0.087 3.9e-1 13 Click to see details
GSE28260 Renal cortex and medulla -0.042 4.5e-1 -0.087 3.9e-1 13 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
194 hsa-miR-640 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT097121 TNPO1 transportin 1 2 2
MIRT115090 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 4
MIRT204603 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 8
MIRT204634 MOB4 MOB family member 4, phocein 2 8
MIRT344451 MTRNR2L1 MT-RNR2-like 1 2 2
MIRT405772 EIF5 eukaryotic translation initiation factor 5 2 2
MIRT445876 SENP6 SUMO1/sentrin specific peptidase 6 2 2
MIRT497418 FAM46A family with sequence similarity 46 member A 2 2
MIRT504394 HMX2 H6 family homeobox 2 2 4
MIRT504691 SLCO2B1 solute carrier organic anion transporter family member 2B1 2 8
MIRT512386 MTRNR2L3 MT-RNR2-like 3 2 6
MIRT513003 MAN1A2 mannosidase alpha class 1A member 2 2 2
MIRT513084 USP9X ubiquitin specific peptidase 9, X-linked 2 2
MIRT519122 ALDH2 aldehyde dehydrogenase 2 family (mitochondrial) 2 2
MIRT523836 F2RL1 F2R like trypsin receptor 1 2 2
MIRT565356 TMCC1 transmembrane and coiled-coil domain family 1 2 2
MIRT575895 Dis3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease 2 3
MIRT576894 Poteg POTE ankyrin domain family, member G 2 2
MIRT613780 RPS6 ribosomal protein S6 2 2
MIRT613934 POLR3A RNA polymerase III subunit A 2 2
MIRT614348 LOH12CR1 BLOC-1 related complex subunit 5 2 2
MIRT614534 NOA1 nitric oxide associated 1 2 2
MIRT617019 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT618247 MANEAL mannosidase endo-alpha like 2 2
MIRT619051 TTC4 tetratricopeptide repeat domain 4 2 2
MIRT619442 ZNF517 zinc finger protein 517 2 2
MIRT619723 FPR2 formyl peptide receptor 2 2 2
MIRT620179 TRIM72 tripartite motif containing 72 2 2
MIRT620370 ANKRD62 ankyrin repeat domain 62 2 2
MIRT621263 RTN2 reticulon 2 2 2
MIRT621463 APOH apolipoprotein H 2 2
MIRT621571 ZBTB43 zinc finger and BTB domain containing 43 2 2
MIRT621683 TSPYL1 TSPY like 1 2 2
MIRT622866 PDE7A phosphodiesterase 7A 2 2
MIRT624669 ARHGEF39 Rho guanine nucleotide exchange factor 39 2 2
MIRT625607 ZNF84 zinc finger protein 84 2 2
MIRT626111 IL23R interleukin 23 receptor 2 2
MIRT628380 CACNB2 calcium voltage-gated channel auxiliary subunit beta 2 2 2
MIRT628553 MELK maternal embryonic leucine zipper kinase 2 2
MIRT628671 C2orf72 chromosome 2 open reading frame 72 2 2
MIRT628747 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT628776 TMEM154 transmembrane protein 154 2 2
MIRT628918 ZNF430 zinc finger protein 430 2 2
MIRT629174 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT629209 C12orf66 chromosome 12 open reading frame 66 2 2
MIRT629267 SLC5A8 solute carrier family 5 member 8 2 2
MIRT629498 AS3MT arsenite methyltransferase 2 2
MIRT629665 USP1 ubiquitin specific peptidase 1 2 2
MIRT629760 STK25 serine/threonine kinase 25 2 2
MIRT630899 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT631105 SLC15A2 solute carrier family 15 member 2 2 2
MIRT631112 ATCAY ATCAY, caytaxin 2 2
MIRT631450 DLEU1 deleted in lymphocytic leukemia 1 (non-protein coding) 2 2
MIRT631505 FFAR4 free fatty acid receptor 4 2 2
MIRT631580 ITGAL integrin subunit alpha L 2 2
MIRT631836 CMBL carboxymethylenebutenolidase homolog 2 2
MIRT632342 SWSAP1 SWIM-type zinc finger 7 associated protein 1 2 2
MIRT633214 ZNF584 zinc finger protein 584 2 2
MIRT633223 ZNF43 zinc finger protein 43 2 2
MIRT633480 ARIH2OS ariadne RBR E3 ubiquitin protein ligase 2 opposite strand 2 2
MIRT633511 LRRC27 leucine rich repeat containing 27 2 2
MIRT633615 CWF19L1 CWF19 like 1, cell cycle control (S. pombe) 2 2
MIRT633652 SLC28A1 solute carrier family 28 member 1 2 2
MIRT633677 ZNF576 zinc finger protein 576 2 2
MIRT634196 TMOD2 tropomodulin 2 2 4
MIRT634388 PLSCR1 phospholipid scramblase 1 2 2
MIRT635817 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT635962 TTC31 tetratricopeptide repeat domain 31 2 2
MIRT636114 YPEL1 yippee like 1 2 2
MIRT636164 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT636768 CLUAP1 clusterin associated protein 1 2 2
MIRT637092 CXorf23 BCLAF1 and THRAP3 family member 3 2 2
MIRT637316 FAM9B family with sequence similarity 9 member B 2 2
MIRT637540 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT637628 ZNF431 zinc finger protein 431 2 2
MIRT637826 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT637945 IVD isovaleryl-CoA dehydrogenase 2 2
MIRT637968 IRF1 interferon regulatory factor 1 2 2
MIRT638321 RNF11 ring finger protein 11 2 2
MIRT638386 RAB11FIP1 RAB11 family interacting protein 1 2 2
MIRT639244 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT642608 APOPT1 apoptogenic 1, mitochondrial 2 2
MIRT642793 SLC1A5 solute carrier family 1 member 5 2 2
MIRT643847 LACTB lactamase beta 2 4
MIRT644705 ZNF321P zinc finger protein 321, pseudogene 2 2
MIRT645148 DIS3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease 2 3
MIRT646671 CCDC69 coiled-coil domain containing 69 2 2
MIRT647780 ASB8 ankyrin repeat and SOCS box containing 8 2 2
MIRT648554 WDR92 WD repeat domain 92 2 2
MIRT648990 MRPL49 mitochondrial ribosomal protein L49 2 2
MIRT649099 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT650141 ZNF426 zinc finger protein 426 2 2
MIRT650791 GSR glutathione-disulfide reductase 2 2
MIRT654967 PLEKHA2 pleckstrin homology domain containing A2 2 2
MIRT655099 PHLDA3 pleckstrin homology like domain family A member 3 2 2
MIRT655516 PAG1 phosphoprotein membrane anchor with glycosphingolipid microdomains 1 2 2
MIRT656289 METTL14 methyltransferase like 14 2 2
MIRT656497 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT657074 JPH2 junctophilin 2 2 2
MIRT657314 HOOK3 hook microtubule tethering protein 3 2 2
MIRT657419 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 2 4
MIRT659032 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT659535 CHCHD5 coiled-coil-helix-coiled-coil-helix domain containing 5 2 2
MIRT661532 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT662029 FUT2 fucosyltransferase 2 2 2
MIRT663206 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT663357 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT663557 CCR6 C-C motif chemokine receptor 6 2 2
MIRT663650 POLM DNA polymerase mu 2 2
MIRT663694 ABHD17B abhydrolase domain containing 17B 2 2
MIRT664370 CYB5A cytochrome b5 type A 2 2
MIRT664783 LIAS lipoic acid synthetase 2 4
MIRT665561 TXNL1 thioredoxin like 1 2 2
MIRT665950 TAOK1 TAO kinase 1 2 2
MIRT667338 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT667804 ITIH5 inter-alpha-trypsin inhibitor heavy chain family member 5 2 2
MIRT668804 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT669470 ARPC2 actin related protein 2/3 complex subunit 2 2 2
MIRT669599 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT669806 STOML1 stomatin like 1 2 2
MIRT669944 FBXL2 F-box and leucine rich repeat protein 2 2 2
MIRT670292 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT670381 EMP2 epithelial membrane protein 2 2 2
MIRT670481 DCUN1D2 defective in cullin neddylation 1 domain containing 2 2 2
MIRT670531 KIF1C kinesin family member 1C 2 4
MIRT670565 GLTP glycolipid transfer protein 2 2
MIRT670603 NPHP1 nephrocystin 1 2 2
MIRT670880 CYTIP cytohesin 1 interacting protein 2 2
MIRT670931 LIPG lipase G, endothelial type 2 2
MIRT671261 MTRNR2L5 MT-RNR2-like 5 2 2
MIRT671794 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT671897 GBP4 guanylate binding protein 4 2 2
MIRT672000 SLC35F6 solute carrier family 35 member F6 2 4
MIRT672074 KIR3DX1 killer cell immunoglobulin like receptor, three Ig domains X1 2 2
MIRT672319 C9orf3 chromosome 9 open reading frame 3 2 2
MIRT672853 C22orf29 retrotransposon Gag like 10 2 2
MIRT673395 WNT7B Wnt family member 7B 2 2
MIRT673537 DEGS1 delta 4-desaturase, sphingolipid 1 2 2
MIRT674285 ZNF724P zinc finger protein 724 2 2
MIRT674494 TIRAP TIR domain containing adaptor protein 2 2
MIRT675460 NUBPL nucleotide binding protein like 2 2
MIRT675569 TRIP11 thyroid hormone receptor interactor 11 2 2
MIRT676068 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT676254 PBOV1 prostate and breast cancer overexpressed 1 2 2
MIRT676377 SEC24D SEC24 homolog D, COPII coat complex component 2 2
MIRT676758 SNX2 sorting nexin 2 2 2
MIRT676773 NPHS1 NPHS1, nephrin 2 2
MIRT676874 ENSA endosulfine alpha 2 2
MIRT676918 KLHDC8A kelch domain containing 8A 2 2
MIRT676944 S1PR3 sphingosine-1-phosphate receptor 3 2 2
MIRT676957 HFE hemochromatosis 2 2
MIRT676967 RNF19B ring finger protein 19B 2 2
MIRT676972 ZNF708 zinc finger protein 708 2 2
MIRT677042 ZNF34 zinc finger protein 34 2 2
MIRT677070 VMAC vimentin type intermediate filament associated coiled-coil protein 2 2
MIRT677093 MFSD11 major facilitator superfamily domain containing 11 2 4
MIRT677134 P2RX7 purinergic receptor P2X 7 2 2
MIRT677179 ZNF786 zinc finger protein 786 2 2
MIRT677228 C15orf40 chromosome 15 open reading frame 40 2 2
MIRT677320 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 2
MIRT677455 PDLIM3 PDZ and LIM domain 3 2 2
MIRT677809 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT677937 ZNF519 zinc finger protein 519 2 2
MIRT678063 UBN2 ubinuclein 2 2 4
MIRT678072 EIF2A eukaryotic translation initiation factor 2A 2 2
MIRT678252 FXN frataxin 2 2
MIRT678315 FBLIM1 filamin binding LIM protein 1 2 2
MIRT678367 XIAP X-linked inhibitor of apoptosis 2 4
MIRT678372 RNF115 ring finger protein 115 2 2
MIRT678410 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678518 ZNF347 zinc finger protein 347 2 2
MIRT678566 CDK4 cyclin dependent kinase 4 2 2
MIRT678580 PPP1R3B protein phosphatase 1 regulatory subunit 3B 2 2
MIRT678820 PDE6A phosphodiesterase 6A 2 2
MIRT678917 XPOT exportin for tRNA 2 2
MIRT679217 MAN2A2 mannosidase alpha class 2A member 2 2 2
MIRT679437 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT679595 HILPDA hypoxia inducible lipid droplet associated 2 2
MIRT679755 TLR6 toll like receptor 6 2 2
MIRT679800 APOBEC3A apolipoprotein B mRNA editing enzyme catalytic subunit 3A 2 2
MIRT680057 CD96 CD96 molecule 2 2
MIRT680116 CCDC30 coiled-coil domain containing 30 2 4
MIRT680181 ZNF554 zinc finger protein 554 2 2
MIRT680439 WDR12 WD repeat domain 12 2 2
MIRT680789 ZNF578 zinc finger protein 578 2 2
MIRT692464 APEX2 apurinic/apyrimidinic endodeoxyribonuclease 2 2 2
MIRT702952 HIP1 huntingtin interacting protein 1 2 2
MIRT706016 ZSCAN2 zinc finger and SCAN domain containing 2 2 2
MIRT706032 F2R coagulation factor II thrombin receptor 2 2
MIRT706135 MTRNR2L10 MT-RNR2-like 10 2 2
MIRT706394 HAS2 hyaluronan synthase 2 2 2
MIRT713293 DCP2 decapping mRNA 2 2 2
MIRT716583 BRAP BRCA1 associated protein 2 2
MIRT720433 C19orf47 chromosome 19 open reading frame 47 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-640 Paclitaxel 36314 NSC125973 approved resistant High Ovarian Cancer tissue and cell line (SKOV3)
hsa-miR-640 Cetuximab resistant High Colon Cancer cell line
hsa-miR-640 Trametinib 11707110 NSC758246 approved resistant High Melanoma cell line (WM266) (1uM)
hsa-miR-640 Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (WM266) (1uM)
hsa-miR-640 Mitoxantrone 4212 NSC279836 approved resistant High Breast Cancer cell line (BT-20, BT-474, BT-549, CAMA-1, HCC1143, HCC1395, HCC1569, HCC1806, HCC-1937, HCC1954, HCC202, HCC38, HCC70, Hs578T, MCF-7, MDA-MB-175VII, MDA-MB-231, MDA-MB-361, MDA-MB-415, MDA-MB-436, MDA-MB-468, SKBR3, T47D, UACC812, EVSA-T, MPE-600 , SK-BR-
hsa-miR-640 Sorafenib 216239 NSC747971 approved sensitive Low Clear Cell Renal Cell Carcinoma cell line (786-O)
hsa-mir-640 Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-mir-640 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-mir-640 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-640 Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-640 Paclitaxel 36314 NSC125973 approved sensitive cell line (SKOV3)
hsa-miR-640 Tamoxifen 2733525 NSC180973 approved sensitive cell line (TamR8)
hsa-miR-640 Oxaliplatin 6857599 NSC266046 approved sensitive cell line (IGROV-1)
hsa-miR-640 Cisplatin 5460033 NSC119875 approved sensitive cell line (IGROV-1)
hsa-miR-640 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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