pre-miRNA Information
pre-miRNA hsa-mir-4793   
Genomic Coordinates chr3: 48644194 - 48644280
Description Homo sapiens miR-4793 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4793-3p
Sequence 58| UCUGCACUGUGAGUUGGCUGGCU |80
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5899925 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs779602935 6 dbSNP
rs757908486 7 dbSNP
rs1422853760 15 dbSNP
rs377721296 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SNRPD1   
Synonyms HsT2456, SMD1, SNRPD, Sm-D1
Description small nuclear ribonucleoprotein D1 polypeptide
Transcript NM_006938   
Expression
Putative miRNA Targets on SNRPD1
3'UTR of SNRPD1
(miRNA target sites are highlighted)
>SNRPD1|NM_006938|3'UTR
   1 TGTCTCTCAAGATTTCAAAGTCATATGAGATTTGGGATATTTTTTGTACAGGTTGTGTTTGTTTATGTCAGTTTTTAATA
  81 AACATAAATGTGGGACAGAGCTGTCTATTTAGTATATCAAAGTTTTAGTAGTTTCCTCCACATTCACGAAATTACCACAG
 161 TGAGAGCTAAGCATTTCTACTGGGCAGTTTCATTTTTAGTTGATCAGGTTTTAAGTTTTTGAACTAAAATTTTTCTTTTT
 241 CTTTTTATGATGAATAAGGTTAAAATAAAAGCCTTAGACAAATTAAATTTGGCAGAGTTTAATTGAGCAAAGGACAATTC
 321 ACAAATCAGGTAGCCCCTGAACCATAATAGGCTCAGAGGCTTCAGCCCAGCTGCATAGTTGAAGATTTATGGACAGAAGG
 401 AAAGTGATGTATGGAAAATGGAAGTGAGATACAGCAACAGCCGGATTAGTTACAGTTCAGCGTTTGCCTTATTTGAATAT
 481 GGTTTGAACAGTTCGCTGTCTTTGGTTGGCTGAAACTTAGTGATTGCCACAAGAGTAGGGTACCGTCTGTTTACACGTCC
 561 AGTTAGGCTACAGTTCTATGTACTGAGAAACCTTTAAGCTGAACTTGAGATATGTAAAGAGACTTTAGGCTAAACTTAAC
 641 AATATATATAGGATATATACCCTTCTACTTCACATGCACTGAATATGCATTTTATTGCTTTACTCTTCATTCTGTGGCAC
 721 CTACCCACAGGGGAAGTAAGAAGTTTGTTTTGGTATTTCGGAAACTAAAGTCCTTATGGGATGGGGTCTAGAATTGATTC
 801 TCCTTTCCTGAGTTTTACTCCACGGAGTCTTAGGTACCTGGTAAAAAGTTGTCTTCTAAATTAAGGGTCATTGCTTTGTT
 881 GTCTAGCTGCTAATGTCTTACTTTTGTTTCTTTTGCTTTTTAATCAGTTCTTAATAGGATATAGTTTTATGTTTTCCAAG
 961 TTATAACTTGGAGTTAATGGTCACTAGATTATCAGTTATGAGCAGTGTTAAAATCTCCTATTAATGTGTAATGTACCTGT
1041 CAGTGCCTCCTTTATTAAGGGGTTCTTTGAGAATAAAAGAGAAAAGACCTACTTTATTTGACAGCAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucgGUCGGU----UGAGUGUCACGUCu 5'
             |||||:    | |:||||| ||| 
Target 5' caaCAGCCGGATTAGTTACAGTTCAGc 3'
435 - 461 138.00 -20.90
2
miRNA  3' ucGGUC-GGUUGA-GUGUC-ACGUCu 5'
            :||| |||:|| ||:|| || || 
Target 5' ctTCAGCCCAGCTGCATAGTTGAAGa 3'
360 - 385 113.00 -19.90
3
miRNA  3' ucggucgGUUGAGUGUCACGucu 5'
                 :| ||  ||||||   
Target 5' tgtaatgTACCTGTCAGTGCctc 3'
1027 - 1049 112.00 -8.93
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30447165 3 COSMIC
COSN30459881 5 COSMIC
COSN31574243 12 COSMIC
COSN1203901 40 COSMIC
COSN26996217 46 COSMIC
COSN30516102 52 COSMIC
COSN26603815 62 COSMIC
COSN31560554 69 COSMIC
COSN31572420 97 COSMIC
COSN31575935 100 COSMIC
COSN31575770 144 COSMIC
COSN30167830 149 COSMIC
COSN17938070 402 COSMIC
COSN27774134 547 COSMIC
COSN19395922 1066 COSMIC
COSN27234389 1297 COSMIC
COSN29011782 1297 COSMIC
COSN9327408 2168 COSMIC
COSN16230356 2302 COSMIC
COSN20591101 2487 COSMIC
COSN24039119 3059 COSMIC
COSN8395420 3098 COSMIC
COSN24776306 3319 COSMIC
COSN19437145 3520 COSMIC
COSN28911458 3722 COSMIC
COSN7460787 3817 COSMIC
COSN17786401 4004 COSMIC
COSN29750381 4110 COSMIC
COSN17554753 4189 COSMIC
COSN22324059 4253 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1222165490 3 dbSNP
rs778618607 3 dbSNP
rs373016009 4 dbSNP
rs200019340 9 dbSNP
rs764043290 11 dbSNP
rs751129695 19 dbSNP
rs113067364 22 dbSNP
rs750227734 23 dbSNP
rs1195154865 24 dbSNP
rs756761537 25 dbSNP
rs767335454 27 dbSNP
rs1332656489 28 dbSNP
rs758189599 31 dbSNP
rs191738518 41 dbSNP
rs756541252 42 dbSNP
rs1301094524 46 dbSNP
rs570427437 47 dbSNP
rs780312482 50 dbSNP
rs376057482 52 dbSNP
rs1365819936 56 dbSNP
rs779357359 56 dbSNP
rs1379254332 57 dbSNP
rs1371980306 67 dbSNP
rs1171783522 79 dbSNP
rs1479107819 80 dbSNP
rs1427757179 82 dbSNP
rs539034884 85 dbSNP
rs1199164194 86 dbSNP
rs552961198 90 dbSNP
rs973378880 91 dbSNP
rs1291319238 97 dbSNP
rs142797517 102 dbSNP
rs937409642 106 dbSNP
rs375770836 119 dbSNP
rs1480376294 126 dbSNP
rs1251931814 127 dbSNP
rs1200559865 128 dbSNP
rs777190143 144 dbSNP
rs1319939259 148 dbSNP
rs1057471628 149 dbSNP
rs147442351 150 dbSNP
rs1042262496 165 dbSNP
rs1176016608 169 dbSNP
rs555676704 180 dbSNP
rs949269115 185 dbSNP
rs1042213061 186 dbSNP
rs903676043 187 dbSNP
rs1000667915 192 dbSNP
rs1384298022 193 dbSNP
rs1176331281 201 dbSNP
rs1481001698 202 dbSNP
rs1403232665 204 dbSNP
rs1017535690 205 dbSNP
rs1350222638 222 dbSNP
rs565844268 225 dbSNP
rs964599607 230 dbSNP
rs138203136 234 dbSNP
rs1459981392 237 dbSNP
rs1261249025 273 dbSNP
rs1329260243 274 dbSNP
rs997199465 277 dbSNP
rs113608292 283 dbSNP
rs112081085 284 dbSNP
rs112445595 286 dbSNP
rs1236557438 295 dbSNP
rs1053349756 313 dbSNP
rs1314446548 316 dbSNP
rs900199324 318 dbSNP
rs1309448609 327 dbSNP
rs995936965 332 dbSNP
rs983605013 334 dbSNP
rs1030518097 345 dbSNP
rs954888123 346 dbSNP
rs908926191 351 dbSNP
rs1313655288 354 dbSNP
rs564744277 355 dbSNP
rs963204513 360 dbSNP
rs75697984 370 dbSNP
rs1005433201 374 dbSNP
rs1015120069 398 dbSNP
rs974186803 407 dbSNP
rs1307306602 412 dbSNP
rs1157211649 425 dbSNP
rs1453418189 427 dbSNP
rs370380762 428 dbSNP
rs938251919 431 dbSNP
rs1180735222 433 dbSNP
rs116963888 436 dbSNP
rs973660259 438 dbSNP
rs1034344774 439 dbSNP
rs35689857 443 dbSNP
rs958979941 443 dbSNP
rs143424166 444 dbSNP
rs917290077 445 dbSNP
rs1258113234 448 dbSNP
rs1203168284 450 dbSNP
rs1349679778 455 dbSNP
rs1286359509 456 dbSNP
rs946157040 458 dbSNP
rs775071920 459 dbSNP
rs923790738 461 dbSNP
rs1000718542 462 dbSNP
rs762580209 463 dbSNP
rs187873362 471 dbSNP
rs1273464269 472 dbSNP
rs900451793 476 dbSNP
rs1361552214 480 dbSNP
rs1414014949 481 dbSNP
rs1053654794 495 dbSNP
rs1423013996 496 dbSNP
rs997418774 498 dbSNP
rs900164274 505 dbSNP
rs1030039048 507 dbSNP
rs931674412 508 dbSNP
rs1051448105 510 dbSNP
rs1004511444 511 dbSNP
rs1336204862 513 dbSNP
rs1446262190 516 dbSNP
rs1263591001 526 dbSNP
rs549413252 531 dbSNP
rs1357529535 539 dbSNP
rs1218467571 540 dbSNP
rs890161320 542 dbSNP
rs1004652488 543 dbSNP
rs542647496 545 dbSNP
rs376002480 546 dbSNP
rs192509712 557 dbSNP
rs550380719 558 dbSNP
rs150499609 563 dbSNP
rs1300460253 569 dbSNP
rs1223403752 571 dbSNP
rs1261773927 577 dbSNP
rs959654358 582 dbSNP
rs139522404 585 dbSNP
rs546268765 586 dbSNP
rs185647022 602 dbSNP
rs1166128381 604 dbSNP
rs1042368775 609 dbSNP
rs1424189075 610 dbSNP
rs925373823 614 dbSNP
rs1024329279 625 dbSNP
rs551504895 630 dbSNP
rs1038912368 636 dbSNP
rs1221824761 638 dbSNP
rs1452878516 641 dbSNP
rs900335855 642 dbSNP
rs933260752 650 dbSNP
rs1052117591 652 dbSNP
rs1319235576 653 dbSNP
rs977506233 657 dbSNP
rs1280578515 658 dbSNP
rs886333019 662 dbSNP
rs1275716650 665 dbSNP
rs761668060 670 dbSNP
rs1438837973 674 dbSNP
rs1352940074 676 dbSNP
rs1004965991 681 dbSNP
rs921929753 682 dbSNP
rs1466154143 688 dbSNP
rs1400944157 695 dbSNP
rs1172723213 697 dbSNP
rs923758524 700 dbSNP
rs1015915990 715 dbSNP
rs936548700 716 dbSNP
rs898942448 719 dbSNP
rs570058498 721 dbSNP
rs1478821364 724 dbSNP
rs1478001658 729 dbSNP
rs189578876 735 dbSNP
rs545288830 752 dbSNP
rs1260613974 760 dbSNP
rs1457073718 761 dbSNP
rs921809645 762 dbSNP
rs1202307327 768 dbSNP
rs555459704 774 dbSNP
rs992301386 778 dbSNP
rs1025668366 784 dbSNP
rs1371470320 786 dbSNP
rs767277295 787 dbSNP
rs575433700 791 dbSNP
rs1334919142 801 dbSNP
rs1344889979 802 dbSNP
rs1468135045 804 dbSNP
rs966959035 805 dbSNP
rs1176546463 813 dbSNP
rs978526869 818 dbSNP
rs940407500 823 dbSNP
rs925291786 824 dbSNP
rs1157663809 826 dbSNP
rs936781227 828 dbSNP
rs1036135624 830 dbSNP
rs974818703 836 dbSNP
rs1341557892 845 dbSNP
rs899326597 848 dbSNP
rs1181169982 857 dbSNP
rs995036356 859 dbSNP
rs1483221711 865 dbSNP
rs921979542 866 dbSNP
rs933157528 874 dbSNP
rs1273598047 884 dbSNP
rs373077405 887 dbSNP
rs894697449 889 dbSNP
rs1283894589 894 dbSNP
rs1241113366 897 dbSNP
rs750233287 897 dbSNP
rs1355993392 899 dbSNP
rs1313043888 903 dbSNP
rs1451938720 906 dbSNP
rs1220507330 910 dbSNP
rs748523057 911 dbSNP
rs1303357537 912 dbSNP
rs886381300 916 dbSNP
rs940598516 927 dbSNP
rs1024716241 928 dbSNP
rs1214037585 937 dbSNP
rs1161148400 951 dbSNP
rs898827716 951 dbSNP
rs1422659088 953 dbSNP
rs1264819106 955 dbSNP
rs1001122660 965 dbSNP
rs1485124373 968 dbSNP
rs1262878851 970 dbSNP
rs967376941 972 dbSNP
rs1489403403 981 dbSNP
rs1289781335 988 dbSNP
rs1244244930 993 dbSNP
rs998894160 994 dbSNP
rs895546884 996 dbSNP
rs538420273 1000 dbSNP
rs558424744 1014 dbSNP
rs1025128376 1015 dbSNP
rs967389894 1019 dbSNP
rs578180418 1021 dbSNP
rs1297379595 1025 dbSNP
rs1400319256 1032 dbSNP
rs1244978331 1036 dbSNP
rs1181220023 1037 dbSNP
rs1300897793 1038 dbSNP
rs1457019184 1040 dbSNP
rs1349929445 1041 dbSNP
rs1478961004 1048 dbSNP
rs957460296 1058 dbSNP
rs1427288957 1061 dbSNP
rs1415514548 1063 dbSNP
rs1474284691 1073 dbSNP
rs989233957 1079 dbSNP
rs978367961 1088 dbSNP
rs1032379144 1097 dbSNP
rs921806598 1098 dbSNP
rs953388673 1104 dbSNP
rs1479007152 1108 dbSNP
rs1407312032 1109 dbSNP
rs958034614 1111 dbSNP
rs1488871501 1115 dbSNP
rs1267336888 1121 dbSNP
rs974715859 1126 dbSNP
rs766899104 1133 dbSNP
rs922022414 1136 dbSNP
rs1219082290 1137 dbSNP
rs987433584 1137 dbSNP
rs911528337 1143 dbSNP
rs940375411 1144 dbSNP
rs1036103569 1151 dbSNP
rs1385842014 1152 dbSNP
rs1424431871 1152 dbSNP
rs149684500 1158 dbSNP
rs543805345 1164 dbSNP
rs755979979 1164 dbSNP
rs1459967842 1172 dbSNP
rs1400299831 1174 dbSNP
rs1171999769 1176 dbSNP
rs1467561044 1178 dbSNP
rs1427602643 1182 dbSNP
rs920306297 1183 dbSNP
rs1198549506 1184 dbSNP
rs953504300 1185 dbSNP
rs1175560218 1188 dbSNP
rs780000201 1190 dbSNP
rs1457367115 1199 dbSNP
rs369308860 1202 dbSNP
rs1257406466 1209 dbSNP
rs930400627 1210 dbSNP
rs377757070 1211 dbSNP
rs907697454 1220 dbSNP
rs1375562451 1222 dbSNP
rs772899005 1225 dbSNP
rs940637216 1225 dbSNP
rs1037630911 1228 dbSNP
rs1302953182 1232 dbSNP
rs1444017094 1233 dbSNP
rs867933065 1235 dbSNP
rs1375495637 1243 dbSNP
rs1395275863 1253 dbSNP
rs1056340487 1256 dbSNP
rs1237243417 1270 dbSNP
rs1449690698 1276 dbSNP
rs894673966 1278 dbSNP
rs1379654646 1284 dbSNP
rs879640647 1284 dbSNP
rs937027551 1284 dbSNP
rs1055360375 1285 dbSNP
rs1014903657 1287 dbSNP
rs1046021907 1291 dbSNP
rs903184471 1297 dbSNP
rs1253919300 1298 dbSNP
rs79714411 1299 dbSNP
rs1209089449 1311 dbSNP
rs1345441246 1313 dbSNP
rs1013986831 1316 dbSNP
rs371039006 1317 dbSNP
rs998778216 1322 dbSNP
rs1453303960 1323 dbSNP
rs1032976318 1324 dbSNP
rs1339234189 1338 dbSNP
rs1334078089 1345 dbSNP
rs752271057 1346 dbSNP
rs1232190782 1348 dbSNP
rs957427782 1351 dbSNP
rs1404772271 1353 dbSNP
rs996954125 1357 dbSNP
rs1419358265 1361 dbSNP
rs144483343 1362 dbSNP
rs953260677 1363 dbSNP
rs1160542752 1365 dbSNP
rs1442855024 1369 dbSNP
rs560627391 1386 dbSNP
rs537033623 1390 dbSNP
rs113432207 1391 dbSNP
rs181513793 1393 dbSNP
rs1161883703 1395 dbSNP
rs1258049555 1400 dbSNP
rs961960745 1406 dbSNP
rs971702339 1407 dbSNP
rs1286207525 1409 dbSNP
rs1241769349 1419 dbSNP
rs1353628152 1421 dbSNP
rs1284178044 1427 dbSNP
rs1393360761 1428 dbSNP
rs184601437 1442 dbSNP
rs1342738729 1451 dbSNP
rs1276718531 1452 dbSNP
rs987565634 1460 dbSNP
rs1328779293 1468 dbSNP
rs907917528 1469 dbSNP
rs930368070 1476 dbSNP
rs778023921 1495 dbSNP
rs1403728465 1496 dbSNP
rs916063750 1503 dbSNP
rs1444012056 1515 dbSNP
rs950281970 1516 dbSNP
rs1046328738 1523 dbSNP
rs903406873 1524 dbSNP
rs1191245392 1528 dbSNP
rs1477371424 1540 dbSNP
rs920526166 1546 dbSNP
rs999080826 1549 dbSNP
rs1054356884 1552 dbSNP
rs893166246 1554 dbSNP
rs531716580 1555 dbSNP
rs1358240087 1562 dbSNP
rs1210142742 1565 dbSNP
rs916921938 1566 dbSNP
rs1257359201 1567 dbSNP
rs949874928 1567 dbSNP
rs1041476544 1568 dbSNP
rs1456373865 1568 dbSNP
rs1341501082 1569 dbSNP
rs1028446295 1571 dbSNP
rs1434626810 1572 dbSNP
rs888937508 1583 dbSNP
rs1008695181 1589 dbSNP
rs1407089612 1591 dbSNP
rs1444036082 1594 dbSNP
rs1168428734 1596 dbSNP
rs1053943253 1601 dbSNP
rs1424032426 1604 dbSNP
rs894084077 1608 dbSNP
rs996425959 1609 dbSNP
rs1245706601 1615 dbSNP
rs1018790039 1617 dbSNP
rs1473339059 1618 dbSNP
rs1256771343 1620 dbSNP
rs1198540465 1621 dbSNP
rs1029031533 1622 dbSNP
rs56242923 1622 dbSNP
rs954740543 1622 dbSNP
rs550342028 1629 dbSNP
rs1275659835 1633 dbSNP
rs28740912 1633 dbSNP
rs1422192243 1634 dbSNP
rs1015027630 1642 dbSNP
rs1329274759 1642 dbSNP
rs972006463 1644 dbSNP
rs1332848629 1646 dbSNP
rs1400880499 1648 dbSNP
rs1172284131 1649 dbSNP
rs533072729 1651 dbSNP
rs546826022 1655 dbSNP
rs973239564 1657 dbSNP
rs951786124 1659 dbSNP
rs1172780761 1664 dbSNP
rs1331794526 1666 dbSNP
rs1027427450 1667 dbSNP
rs1455227674 1667 dbSNP
rs188521147 1675 dbSNP
rs1458616945 1684 dbSNP
rs1240499236 1685 dbSNP
rs1245313545 1688 dbSNP
rs1442194614 1689 dbSNP
rs1279662274 1690 dbSNP
rs915630038 1692 dbSNP
rs144390384 1695 dbSNP
rs981610498 1696 dbSNP
rs1220420580 1698 dbSNP
rs1308651405 1698 dbSNP
rs879611331 1706 dbSNP
rs934900638 1708 dbSNP
rs977470697 1711 dbSNP
rs924412234 1715 dbSNP
rs1054658339 1716 dbSNP
rs1436228563 1722 dbSNP
rs1378041597 1724 dbSNP
rs1482971442 1725 dbSNP
rs893134876 1728 dbSNP
rs1258604354 1730 dbSNP
rs932701612 1736 dbSNP
rs181389453 1744 dbSNP
rs1238443944 1750 dbSNP
rs1354073959 1750 dbSNP
rs1213403188 1751 dbSNP
rs1285491445 1754 dbSNP
rs1487438645 1754 dbSNP
rs891169483 1755 dbSNP
rs1478978628 1756 dbSNP
rs1172051888 1758 dbSNP
rs1429119494 1766 dbSNP
rs1465118315 1767 dbSNP
rs1378291352 1776 dbSNP
rs932103509 1785 dbSNP
rs1416322669 1786 dbSNP
rs1403987627 1787 dbSNP
rs1396216928 1788 dbSNP
rs1297152318 1789 dbSNP
rs568959013 1789 dbSNP
rs771313105 1791 dbSNP
rs1162043373 1794 dbSNP
rs1018778701 1801 dbSNP
rs781349865 1803 dbSNP
rs1415085879 1808 dbSNP
rs1190519740 1809 dbSNP
rs1278781615 1830 dbSNP
rs1262811522 1842 dbSNP
rs1015327321 1843 dbSNP
rs112539902 1852 dbSNP
rs1311522025 1852 dbSNP
rs775726072 1853 dbSNP
rs1263783560 1854 dbSNP
rs2156557 1854 dbSNP
rs994880329 1854 dbSNP
rs1257803837 1855 dbSNP
rs1027607841 1858 dbSNP
rs1234973878 1861 dbSNP
rs1346037475 1864 dbSNP
rs952064957 1872 dbSNP
rs1363569878 1881 dbSNP
rs1291297248 1882 dbSNP
rs958541704 1884 dbSNP
rs753556591 1893 dbSNP
rs1167719826 1894 dbSNP
rs991131483 1896 dbSNP
rs1194782113 1900 dbSNP
rs991245629 1900 dbSNP
rs1023071987 1908 dbSNP
rs1194764139 1913 dbSNP
rs1265452396 1914 dbSNP
rs971141871 1917 dbSNP
rs981185424 1918 dbSNP
rs1431937546 1919 dbSNP
rs1196176230 1934 dbSNP
rs1378887453 1936 dbSNP
rs924763323 1940 dbSNP
rs1253601774 1947 dbSNP
rs186531186 1948 dbSNP
rs578090427 1955 dbSNP
rs971705222 1956 dbSNP
rs1257210990 1962 dbSNP
rs1157684070 1977 dbSNP
rs146648755 1984 dbSNP
rs1298734131 1987 dbSNP
rs1385789142 1991 dbSNP
rs924267416 1994 dbSNP
rs1328564392 1998 dbSNP
rs1400136357 2006 dbSNP
rs1445249458 2006 dbSNP
rs1171837407 2009 dbSNP
rs1463848875 2018 dbSNP
rs935768962 2029 dbSNP
rs989906654 2039 dbSNP
rs1298578743 2046 dbSNP
rs1175604265 2049 dbSNP
rs1366872680 2053 dbSNP
rs1384985071 2055 dbSNP
rs1397003559 2056 dbSNP
rs932896424 2058 dbSNP
rs1456395493 2063 dbSNP
rs1237418104 2073 dbSNP
rs1331784127 2074 dbSNP
rs1049723923 2075 dbSNP
rs1481485155 2078 dbSNP
rs554413559 2080 dbSNP
rs1356104073 2081 dbSNP
rs944120768 2085 dbSNP
rs1217888290 2086 dbSNP
rs1376897615 2087 dbSNP
rs574272862 2091 dbSNP
rs1265191428 2093 dbSNP
rs1487817520 2095 dbSNP
rs1330133631 2111 dbSNP
rs932156210 2118 dbSNP
rs1037158621 2128 dbSNP
rs1302595548 2131 dbSNP
rs770381578 2137 dbSNP
rs993296787 2138 dbSNP
rs776191114 2141 dbSNP
rs1439153962 2142 dbSNP
rs890743488 2150 dbSNP
rs1182407099 2157 dbSNP
rs1378172812 2159 dbSNP
rs755232710 2169 dbSNP
rs1159626673 2183 dbSNP
rs1253852399 2184 dbSNP
rs1199609149 2195 dbSNP
rs1485797910 2198 dbSNP
rs1282018040 2200 dbSNP
rs1213899407 2203 dbSNP
rs887678471 2213 dbSNP
rs1352308863 2227 dbSNP
rs1013263044 2233 dbSNP
rs1241851434 2234 dbSNP
rs1339179481 2246 dbSNP
rs1312473659 2252 dbSNP
rs1036405312 2261 dbSNP
rs1456161539 2263 dbSNP
rs1022615909 2264 dbSNP
rs897824050 2267 dbSNP
rs56377761 2268 dbSNP
rs562574634 2269 dbSNP
rs1002575067 2272 dbSNP
rs1361210873 2281 dbSNP
rs1446204541 2286 dbSNP
rs1307169948 2288 dbSNP
rs1186659769 2289 dbSNP
rs1455301926 2289 dbSNP
rs1491339147 2289 dbSNP
rs1031415159 2290 dbSNP
rs1206322368 2290 dbSNP
rs1234343004 2290 dbSNP
rs1265363561 2290 dbSNP
rs1276586788 2290 dbSNP
rs1327194563 2290 dbSNP
rs1357734747 2290 dbSNP
rs1385153681 2290 dbSNP
rs1388564645 2290 dbSNP
rs1399661141 2290 dbSNP
rs1486639552 2290 dbSNP
rs1491244258 2290 dbSNP
rs149515303 2290 dbSNP
rs529047069 2290 dbSNP
rs56754076 2290 dbSNP
rs1241114812 2291 dbSNP
rs1164101986 2292 dbSNP
rs955796007 2293 dbSNP
rs990235847 2296 dbSNP
rs894542823 2298 dbSNP
rs1477300519 2299 dbSNP
rs1242269041 2300 dbSNP
rs914741880 2301 dbSNP
rs943996076 2302 dbSNP
rs868522589 2303 dbSNP
rs576116466 2304 dbSNP
rs1197504947 2305 dbSNP
rs1235805253 2308 dbSNP
rs1012719078 2309 dbSNP
rs1458679233 2311 dbSNP
rs1330566533 2313 dbSNP
rs1177457262 2314 dbSNP
rs944055942 2314 dbSNP
rs1412536152 2315 dbSNP
rs1396528232 2316 dbSNP
rs1469061687 2316 dbSNP
rs936405879 2317 dbSNP
rs1166631764 2319 dbSNP
rs1409148569 2320 dbSNP
rs1418568599 2321 dbSNP
rs1465007134 2323 dbSNP
rs1329445301 2328 dbSNP
rs1169260169 2334 dbSNP
rs1476778718 2337 dbSNP
rs1393988699 2343 dbSNP
rs1193659429 2353 dbSNP
rs1402571559 2359 dbSNP
rs1442940377 2360 dbSNP
rs1438729791 2362 dbSNP
rs1275429659 2363 dbSNP
rs1302503569 2365 dbSNP
rs971375899 2368 dbSNP
rs1037044018 2373 dbSNP
rs1344525641 2378 dbSNP
rs1304274377 2381 dbSNP
rs1236505769 2387 dbSNP
rs1373182552 2388 dbSNP
rs191002408 2390 dbSNP
rs141378151 2392 dbSNP
rs1313847197 2393 dbSNP
rs1354864236 2407 dbSNP
rs1412422748 2422 dbSNP
rs1048898063 2424 dbSNP
rs533107903 2425 dbSNP
rs1455185336 2431 dbSNP
rs1379057113 2432 dbSNP
rs1177105280 2437 dbSNP
rs1317887437 2442 dbSNP
rs957028236 2447 dbSNP
rs181023616 2451 dbSNP
rs1442069904 2453 dbSNP
rs1281297943 2455 dbSNP
rs1213180642 2456 dbSNP
rs1351565858 2457 dbSNP
rs921028277 2459 dbSNP
rs1223178236 2466 dbSNP
rs1260506139 2467 dbSNP
rs1373905614 2471 dbSNP
rs774043781 2472 dbSNP
rs1445454488 2482 dbSNP
rs1354492555 2489 dbSNP
rs906860082 2490 dbSNP
rs1436088305 2494 dbSNP
rs1358110287 2498 dbSNP
rs1410912504 2499 dbSNP
rs953762734 2505 dbSNP
rs1002457567 2506 dbSNP
rs1401813901 2513 dbSNP
rs986340362 2516 dbSNP
rs187272761 2517 dbSNP
rs912045091 2524 dbSNP
rs529208852 2528 dbSNP
rs1258543258 2530 dbSNP
rs761314838 2531 dbSNP
rs955763816 2533 dbSNP
rs548990820 2542 dbSNP
rs1487405991 2548 dbSNP
rs117066915 2553 dbSNP
rs1477342902 2554 dbSNP
rs1021778671 2558 dbSNP
rs919472917 2559 dbSNP
rs1333845194 2563 dbSNP
rs930666116 2563 dbSNP
rs1293639091 2566 dbSNP
rs750180303 2567 dbSNP
rs531339194 2571 dbSNP
rs1417228157 2572 dbSNP
rs1287788800 2581 dbSNP
rs985724380 2582 dbSNP
rs1347520497 2584 dbSNP
rs1410664483 2585 dbSNP
rs912773960 2586 dbSNP
rs965622448 2591 dbSNP
rs972706096 2592 dbSNP
rs1357686084 2597 dbSNP
rs1476970853 2600 dbSNP
rs78850454 2607 dbSNP
rs1045601910 2610 dbSNP
rs1187252537 2622 dbSNP
rs1486877478 2626 dbSNP
rs918605034 2627 dbSNP
rs9954575 2629 dbSNP
rs9950150 2635 dbSNP
rs1234835664 2644 dbSNP
rs753812805 2647 dbSNP
rs1294394685 2652 dbSNP
rs534376812 2654 dbSNP
rs554097773 2656 dbSNP
rs957245397 2660 dbSNP
rs1214692768 2664 dbSNP
rs567930069 2668 dbSNP
rs1291247453 2669 dbSNP
rs1440846112 2672 dbSNP
rs948593669 2683 dbSNP
rs1044242228 2687 dbSNP
rs1328350085 2696 dbSNP
rs1464388089 2709 dbSNP
rs1372780494 2710 dbSNP
rs907088412 2713 dbSNP
rs938617251 2714 dbSNP
rs1214714510 2715 dbSNP
rs1171359213 2718 dbSNP
rs1430481791 2721 dbSNP
rs1011275713 2737 dbSNP
rs1052688772 2739 dbSNP
rs1253548777 2753 dbSNP
rs1215399832 2759 dbSNP
rs891487992 2759 dbSNP
rs1027974484 2775 dbSNP
rs1250448684 2776 dbSNP
rs374023534 2777 dbSNP
rs1011281075 2781 dbSNP
rs1308841525 2782 dbSNP
rs1325354003 2787 dbSNP
rs1232837042 2788 dbSNP
rs986947914 2795 dbSNP
rs1306252301 2803 dbSNP
rs143600627 2804 dbSNP
rs758499821 2814 dbSNP
rs889553298 2819 dbSNP
rs1299054501 2827 dbSNP
rs912280328 2835 dbSNP
rs1357578649 2853 dbSNP
rs1007431573 2855 dbSNP
rs1019800129 2856 dbSNP
rs73427762 2858 dbSNP
rs972236297 2859 dbSNP
rs1190735792 2863 dbSNP
rs1417189028 2870 dbSNP
rs1423181499 2875 dbSNP
rs1177508471 2881 dbSNP
rs1481412617 2882 dbSNP
rs1277744318 2884 dbSNP
rs1209599496 2887 dbSNP
rs1347944723 2888 dbSNP
rs1416205888 2890 dbSNP
rs1281795930 2896 dbSNP
rs1237552585 2901 dbSNP
rs575982076 2902 dbSNP
rs919525337 2906 dbSNP
rs1308168616 2907 dbSNP
rs1393501327 2910 dbSNP
rs930886350 2912 dbSNP
rs1312478417 2932 dbSNP
rs1360070142 2935 dbSNP
rs151240741 2936 dbSNP
rs1156874374 2947 dbSNP
rs114943222 2948 dbSNP
rs2847124 2950 dbSNP
rs984212447 2961 dbSNP
rs916617043 2965 dbSNP
rs948163769 2968 dbSNP
rs1420641136 2972 dbSNP
rs557553779 2975 dbSNP
rs1186820132 2978 dbSNP
rs1485766794 2978 dbSNP
rs907260989 2980 dbSNP
rs999106638 3004 dbSNP
rs1350675565 3014 dbSNP
rs1261814803 3018 dbSNP
rs1436359902 3022 dbSNP
rs928482270 3036 dbSNP
rs938586312 3037 dbSNP
rs373526779 3042 dbSNP
rs1384234770 3045 dbSNP
rs560129268 3055 dbSNP
rs1455189914 3064 dbSNP
rs190965928 3072 dbSNP
rs1303772378 3077 dbSNP
rs1352525075 3078 dbSNP
rs1415425301 3081 dbSNP
rs1163869788 3083 dbSNP
rs1475334305 3089 dbSNP
rs1214234132 3090 dbSNP
rs747071896 3093 dbSNP
rs529198885 3096 dbSNP
rs891456928 3098 dbSNP
rs1011497574 3099 dbSNP
rs1207439375 3099 dbSNP
rs1028026807 3112 dbSNP
rs1479055701 3122 dbSNP
rs889459159 3133 dbSNP
rs1194324879 3149 dbSNP
rs947009684 3153 dbSNP
rs1337307245 3158 dbSNP
rs182757456 3166 dbSNP
rs889511487 3168 dbSNP
rs1226848976 3172 dbSNP
rs112357533 3178 dbSNP
rs961126659 3180 dbSNP
rs531300036 3191 dbSNP
rs1325055039 3193 dbSNP
rs972672828 3193 dbSNP
rs1012335616 3194 dbSNP
rs1461759162 3195 dbSNP
rs1020188687 3196 dbSNP
rs1165767108 3197 dbSNP
rs901364536 3204 dbSNP
rs994418459 3212 dbSNP
rs1194620697 3215 dbSNP
rs1453118466 3223 dbSNP
rs1026436222 3227 dbSNP
rs757351561 3236 dbSNP
rs1470087631 3237 dbSNP
rs952948004 3243 dbSNP
rs1271196284 3244 dbSNP
rs113402101 3245 dbSNP
rs1340252152 3246 dbSNP
rs1272005196 3247 dbSNP
rs916123475 3258 dbSNP
rs140435612 3263 dbSNP
rs1302562389 3266 dbSNP
rs527426715 3270 dbSNP
rs78911809 3278 dbSNP
rs981437137 3280 dbSNP
rs969847173 3281 dbSNP
rs928740717 3287 dbSNP
rs1326547632 3291 dbSNP
rs547958990 3304 dbSNP
rs1409021020 3305 dbSNP
rs1352111824 3308 dbSNP
rs982245450 3309 dbSNP
rs934744140 3313 dbSNP
rs1395062780 3315 dbSNP
rs1194769179 3318 dbSNP
rs1212724017 3318 dbSNP
rs1231543326 3319 dbSNP
rs1234962709 3319 dbSNP
rs1281082553 3319 dbSNP
rs1491049188 3319 dbSNP
rs563564371 3319 dbSNP
rs58014159 3319 dbSNP
rs764360084 3319 dbSNP
rs866558419 3319 dbSNP
rs1369563458 3320 dbSNP
rs76030405 3321 dbSNP
rs1277556776 3325 dbSNP
rs1303467327 3328 dbSNP
rs1052979268 3333 dbSNP
rs1309445111 3334 dbSNP
rs1374353118 3335 dbSNP
rs928470822 3335 dbSNP
rs947170463 3335 dbSNP
rs1416661035 3336 dbSNP
rs1049677313 3337 dbSNP
rs1158412201 3340 dbSNP
rs1470705531 3342 dbSNP
rs889689002 3348 dbSNP
rs1186120238 3351 dbSNP
rs150438630 3354 dbSNP
rs988614531 3356 dbSNP
rs913114249 3362 dbSNP
rs1313945041 3374 dbSNP
rs1019266126 3384 dbSNP
rs947344469 3385 dbSNP
rs1043086259 3387 dbSNP
rs1289939223 3389 dbSNP
rs1412562991 3393 dbSNP
rs543049354 3396 dbSNP
rs1313029059 3402 dbSNP
rs952214335 3405 dbSNP
rs910919577 3411 dbSNP
rs942426176 3415 dbSNP
rs1040855109 3416 dbSNP
rs1287710962 3418 dbSNP
rs1469761731 3424 dbSNP
rs1023650974 3430 dbSNP
rs1318215536 3442 dbSNP
rs970321913 3446 dbSNP
rs1214440889 3450 dbSNP
rs1163159896 3452 dbSNP
rs901333254 3453 dbSNP
rs1475003658 3455 dbSNP
rs1237613427 3456 dbSNP
rs1418838172 3457 dbSNP
rs981872852 3484 dbSNP
rs1484920037 3489 dbSNP
rs994303382 3495 dbSNP
rs928650735 3503 dbSNP
rs934775924 3504 dbSNP
rs1269799943 3515 dbSNP
rs1231222437 3517 dbSNP
rs1047263272 3522 dbSNP
rs536450462 3526 dbSNP
rs189919875 3527 dbSNP
rs914621384 3529 dbSNP
rs1359297443 3530 dbSNP
rs781505838 3537 dbSNP
rs1287728544 3552 dbSNP
rs746099827 3563 dbSNP
rs1049562755 3564 dbSNP
rs1324382253 3565 dbSNP
rs1461241197 3568 dbSNP
rs1395558690 3570 dbSNP
rs1167142296 3571 dbSNP
rs1426923132 3577 dbSNP
rs570028665 3587 dbSNP
rs1418923070 3588 dbSNP
rs1187124709 3590 dbSNP
rs562019620 3598 dbSNP
rs1249800861 3599 dbSNP
rs1211639294 3601 dbSNP
rs1161825108 3602 dbSNP
rs1416645955 3604 dbSNP
rs1223343226 3605 dbSNP
rs1024043003 3607 dbSNP
rs943952579 3610 dbSNP
rs1294233131 3627 dbSNP
rs558717139 3645 dbSNP
rs530800324 3649 dbSNP
rs1462409410 3650 dbSNP
rs762921979 3654 dbSNP
rs969437890 3654 dbSNP
rs1331207648 3656 dbSNP
rs1372222890 3676 dbSNP
rs1295605892 3681 dbSNP
rs572493752 3682 dbSNP
rs1171292911 3684 dbSNP
rs1443854444 3684 dbSNP
rs1330493986 3685 dbSNP
rs1192639095 3688 dbSNP
rs1250404596 3688 dbSNP
rs1391991608 3688 dbSNP
rs1479490198 3688 dbSNP
rs549010044 3688 dbSNP
rs993753867 3690 dbSNP
rs796222512 3692 dbSNP
rs8095809 3693 dbSNP
rs1234232406 3694 dbSNP
rs1332124285 3695 dbSNP
rs868728538 3698 dbSNP
rs888166450 3702 dbSNP
rs865781780 3703 dbSNP
rs138210213 3706 dbSNP
rs542861839 3707 dbSNP
rs1316146482 3708 dbSNP
rs1373730263 3708 dbSNP
rs969026981 3711 dbSNP
rs1197569280 3712 dbSNP
rs1378125481 3713 dbSNP
rs1434027680 3713 dbSNP
rs202192298 3714 dbSNP
rs1442029639 3715 dbSNP
rs373150350 3716 dbSNP
rs377258556 3716 dbSNP
rs1185935621 3717 dbSNP
rs1483805248 3717 dbSNP
rs1230474831 3718 dbSNP
rs1289320537 3718 dbSNP
rs773285397 3718 dbSNP
rs1312418975 3719 dbSNP
rs1353721504 3719 dbSNP
rs1451493955 3720 dbSNP
rs762709657 3720 dbSNP
rs1473371583 3721 dbSNP
rs868858000 3721 dbSNP
rs1415205384 3722 dbSNP
rs551883466 3723 dbSNP
rs1422037829 3728 dbSNP
rs1442464774 3729 dbSNP
rs963555988 3732 dbSNP
rs1169137897 3733 dbSNP
rs1396814664 3734 dbSNP
rs1395067910 3739 dbSNP
rs1203918452 3740 dbSNP
rs1331731069 3744 dbSNP
rs970755267 3745 dbSNP
rs1210960921 3749 dbSNP
rs1333034244 3752 dbSNP
rs1292886897 3753 dbSNP
rs1245670420 3759 dbSNP
rs994890950 3766 dbSNP
rs1342377993 3767 dbSNP
rs1029498270 3774 dbSNP
rs1003119262 3778 dbSNP
rs141385075 3782 dbSNP
rs1277499247 3783 dbSNP
rs1391887265 3791 dbSNP
rs910877773 3799 dbSNP
rs1472893408 3805 dbSNP
rs942413522 3806 dbSNP
rs183259352 3807 dbSNP
rs1428510036 3814 dbSNP
rs544971474 3815 dbSNP
rs1338335275 3823 dbSNP
rs1229758592 3824 dbSNP
rs922307249 3833 dbSNP
rs756589617 3838 dbSNP
rs780704547 3839 dbSNP
rs1251947537 3845 dbSNP
rs929728160 3846 dbSNP
rs956028574 3854 dbSNP
rs988788763 3858 dbSNP
rs1226780226 3863 dbSNP
rs1364445292 3870 dbSNP
rs1298203728 3873 dbSNP
rs564766444 3874 dbSNP
rs1486212290 3879 dbSNP
rs888649044 3887 dbSNP
rs1322578034 3888 dbSNP
rs968778750 3890 dbSNP
rs985316679 3893 dbSNP
rs146972121 3897 dbSNP
rs1261739904 3903 dbSNP
rs1428509674 3903 dbSNP
rs1045356893 3904 dbSNP
rs1391372619 3907 dbSNP
rs547130980 3914 dbSNP
rs1252781716 3919 dbSNP
rs1040968307 3920 dbSNP
rs1194760389 3924 dbSNP
rs768289338 3928 dbSNP
rs1195349183 3929 dbSNP
rs1343001873 3932 dbSNP
rs377172618 3934 dbSNP
rs761553961 3935 dbSNP
rs1345559594 3940 dbSNP
rs1274096086 3942 dbSNP
rs888219309 3946 dbSNP
rs560658804 3948 dbSNP
rs530197176 3949 dbSNP
rs956760487 3954 dbSNP
rs1009635833 3956 dbSNP
rs1370664540 3957 dbSNP
rs1376831721 3959 dbSNP
rs1020519717 3960 dbSNP
rs968621248 3964 dbSNP
rs1044992557 3965 dbSNP
rs906039429 3972 dbSNP
rs1297325121 3978 dbSNP
rs979078160 3982 dbSNP
rs549982585 3988 dbSNP
rs570000488 3990 dbSNP
rs1254073411 3991 dbSNP
rs538988981 3992 dbSNP
rs964307716 3993 dbSNP
rs1277797053 3997 dbSNP
rs1219625199 4002 dbSNP
rs188140492 4003 dbSNP
rs138212685 4004 dbSNP
rs1305975147 4005 dbSNP
rs570040574 4006 dbSNP
rs554734867 4008 dbSNP
rs192664824 4009 dbSNP
rs114780611 4010 dbSNP
rs941506316 4012 dbSNP
rs1045644909 4013 dbSNP
rs1406257443 4014 dbSNP
rs1158803024 4017 dbSNP
rs1473079366 4019 dbSNP
rs965258305 4030 dbSNP
rs1185958599 4036 dbSNP
rs1472488612 4039 dbSNP
rs1206269063 4044 dbSNP
rs976960953 4056 dbSNP
rs905423356 4057 dbSNP
rs1267189823 4069 dbSNP
rs939620326 4073 dbSNP
rs1432104306 4086 dbSNP
rs1444013779 4087 dbSNP
rs1056378964 4090 dbSNP
rs530977599 4093 dbSNP
rs918531721 4102 dbSNP
rs1048088247 4103 dbSNP
rs929875962 4103 dbSNP
rs1289811359 4104 dbSNP
rs760177616 4107 dbSNP
rs909544097 4108 dbSNP
rs1284215288 4113 dbSNP
rs1450819518 4114 dbSNP
rs892490497 4115 dbSNP
rs1191187357 4116 dbSNP
rs1009606200 4121 dbSNP
rs1458072128 4125 dbSNP
rs1391153034 4138 dbSNP
rs1163086001 4139 dbSNP
rs113546734 4142 dbSNP
rs1414650563 4144 dbSNP
rs143694254 4154 dbSNP
rs1246101994 4157 dbSNP
rs1187753525 4159 dbSNP
rs1022413048 4161 dbSNP
rs1465156564 4169 dbSNP
rs1044823904 4173 dbSNP
rs1218944601 4176 dbSNP
rs371368102 4178 dbSNP
rs999992821 4181 dbSNP
rs773668363 4187 dbSNP
rs1018541903 4188 dbSNP
rs747725885 4190 dbSNP
rs576393219 4192 dbSNP
rs1029312750 4199 dbSNP
rs1297466923 4200 dbSNP
rs545019088 4201 dbSNP
rs982454090 4208 dbSNP
rs1367818684 4212 dbSNP
rs1455091912 4212 dbSNP
rs909595232 4223 dbSNP
rs1389911202 4224 dbSNP
rs1385231329 4234 dbSNP
rs116580198 4239 dbSNP
rs1010492215 4247 dbSNP
rs1408256144 4249 dbSNP
rs1388292703 4253 dbSNP
rs980936032 4255 dbSNP
rs1021671163 4257 dbSNP
rs1449941192 4264 dbSNP
rs904524803 4272 dbSNP
rs1007277695 4274 dbSNP
rs1018371547 4275 dbSNP
rs1246900784 4276 dbSNP
rs1223176491 4282 dbSNP
rs1339489107 4287 dbSNP
rs143882283 4291 dbSNP
rs1229808824 4293 dbSNP
rs541037356 4306 dbSNP
rs12953660 4307 dbSNP
rs1319106727 4315 dbSNP
rs1056682156 4317 dbSNP
rs1240131176 4330 dbSNP
rs1265426470 4337 dbSNP
rs560620151 4340 dbSNP
rs1370055260 4344 dbSNP
rs1169225563 4346 dbSNP
rs1430400522 4347 dbSNP
rs976636314 4350 dbSNP
rs1173752332 4351 dbSNP
rs1025428502 4353 dbSNP
rs951332989 4357 dbSNP
rs1192589076 4359 dbSNP
rs1481834453 4359 dbSNP
rs1211335805 4362 dbSNP
rs1254363704 4367 dbSNP
rs984010461 4367 dbSNP
rs529765607 4370 dbSNP
rs1233037491 4372 dbSNP
rs1313185731 4374 dbSNP
rs1177634781 4378 dbSNP
rs1303802149 4378 dbSNP
rs1405271534 4380 dbSNP
rs1350095137 4381 dbSNP
rs1308774521 4382 dbSNP
rs1411716084 4383 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucggucgguugagugUCACGUCu 5'
                         ||||||| 
Target 5' ---------------AGUGCAGu 3'
1 - 8
2
miRNA  3' ucgguCGGUUGA---GUGUCACGUCu 5'
               || | ||   | || ||||  
Target 5' gugguGCGAUCUUGGCUCACUGCAAc 3'
7 - 32
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084079. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000300413.5 | 3UTR | AGUGCAGUGGUGCGAUCUUGGCUCACUGCAACCUCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084079
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_AbnovaAb
Location of target site ENST00000300413.5 | 3UTR | UGCUGUGUCACCCAGGCUGGAGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
296 hsa-miR-4793-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092332 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT131237 ATG2A autophagy related 2A 2 2
MIRT145926 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT206559 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT226455 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT337662 ZNF695 zinc finger protein 695 2 2
MIRT405828 SIX4 SIX homeobox 4 2 2
MIRT455113 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT456756 TMEM239 transmembrane protein 239 2 4
MIRT457974 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT458173 LYRM4 LYR motif containing 4 2 4
MIRT458245 SLC9A7 solute carrier family 9 member A7 2 2
MIRT466145 TMEM120B transmembrane protein 120B 2 2
MIRT474981 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT475601 HMGB2 high mobility group box 2 2 4
MIRT480759 BMP3 bone morphogenetic protein 3 2 4
MIRT481156 AVL9 AVL9 cell migration associated 2 2
MIRT482155 AK2 adenylate kinase 2 2 2
MIRT488386 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT496575 KIF18B kinesin family member 18B 2 2
MIRT498411 TXNDC16 thioredoxin domain containing 16 2 4
MIRT504547 ZNF417 zinc finger protein 417 2 6
MIRT505417 TCF7L2 transcription factor 7 like 2 2 2
MIRT509349 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 6
MIRT512164 CD164 CD164 molecule 2 6
MIRT517238 PRIM1 DNA primase subunit 1 2 2
MIRT518671 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT519298 MLH1 mutL homolog 1 2 2
MIRT523662 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT525452 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539847 ZNF766 zinc finger protein 766 2 2
MIRT540076 SSH3 slingshot protein phosphatase 3 2 2
MIRT540320 PIGR polymeric immunoglobulin receptor 2 2
MIRT540548 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT540759 UTP6 UTP6, small subunit processome component 2 2
MIRT541545 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT541553 SLC35E1 solute carrier family 35 member E1 2 2
MIRT541666 ATP8B3 ATPase phospholipid transporting 8B3 2 4
MIRT541722 TFDP2 transcription factor Dp-2 2 2
MIRT541800 DUSP28 dual specificity phosphatase 28 2 2
MIRT541816 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT541907 VWA7 von Willebrand factor A domain containing 7 2 2
MIRT542154 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT542207 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542233 FUT9 fucosyltransferase 9 2 2
MIRT542320 SERPING1 serpin family G member 1 2 2
MIRT542369 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542476 APOC3 apolipoprotein C3 2 2
MIRT542641 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542660 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT542749 PRRG4 proline rich and Gla domain 4 2 4
MIRT542789 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT545442 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT546206 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT552270 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552655 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT554134 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT556795 KIAA1958 KIAA1958 2 2
MIRT564762 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT569428 STX7 syntaxin 7 2 2
MIRT573245 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT607390 LANCL3 LanC like 3 2 2
MIRT607430 NOTCH2NL notch 2 N-terminal like 2 2
MIRT607452 ZNF543 zinc finger protein 543 2 2
MIRT607580 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT607748 ANGPT4 angiopoietin 4 2 2
MIRT607907 SPRYD4 SPRY domain containing 4 2 2
MIRT608703 GMPR guanosine monophosphate reductase 2 2
MIRT612127 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 2 2
MIRT612786 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT616692 LPL lipoprotein lipase 2 2
MIRT617045 ZNF610 zinc finger protein 610 2 2
MIRT617091 ZNF43 zinc finger protein 43 2 2
MIRT617314 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT617355 MELK maternal embryonic leucine zipper kinase 2 2
MIRT617486 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT617579 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT617669 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT617722 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617893 PTCHD3 patched domain containing 3 2 2
MIRT617982 ZNF234 zinc finger protein 234 2 4
MIRT618434 MYLK3 myosin light chain kinase 3 2 4
MIRT618732 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT619045 CASS4 Cas scaffolding protein family member 4 2 2
MIRT619573 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT619671 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT619887 ABHD17B abhydrolase domain containing 17B 2 2
MIRT620519 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT620535 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT620996 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT621304 YIPF4 Yip1 domain family member 4 2 2
MIRT622086 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622168 SMYD1 SET and MYND domain containing 1 2 2
MIRT622543 PXMP4 peroxisomal membrane protein 4 2 2
MIRT622761 PGM3 phosphoglucomutase 3 2 2
MIRT622885 PDCL3 phosducin like 3 2 4
MIRT623130 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 2 2
MIRT624840 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT625047 MBD3 methyl-CpG binding domain protein 3 2 2
MIRT625059 ZNF556 zinc finger protein 556 2 2
MIRT625508 PPAPDC1A phospholipid phosphatase 4 2 2
MIRT625573 ANKRD42 ankyrin repeat domain 42 2 2
MIRT626133 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT626327 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626765 CDC14B cell division cycle 14B 2 2
MIRT626798 CSE1L chromosome segregation 1 like 2 2
MIRT627212 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT627225 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT627256 XKR4 XK related 4 2 2
MIRT628190 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT628466 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT628627 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT629040 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT630847 ACACB acetyl-CoA carboxylase beta 2 2
MIRT631721 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT632264 USP1 ubiquitin specific peptidase 1 2 4
MIRT632571 POLQ DNA polymerase theta 2 2
MIRT633992 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635211 ZNF286A zinc finger protein 286A 2 4
MIRT635249 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635261 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT635283 GK5 glycerol kinase 5 (putative) 2 2
MIRT635663 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT636251 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT636564 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT636814 TBC1D24 TBC1 domain family member 24 2 2
MIRT637358 ZNF460 zinc finger protein 460 2 2
MIRT637473 DEFB105B defensin beta 105B 2 4
MIRT637505 DEFB105A defensin beta 105A 2 4
MIRT637861 SC5D sterol-C5-desaturase 2 2
MIRT638080 ZNF652 zinc finger protein 652 2 2
MIRT638096 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT638174 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT638201 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT638278 SH2B3 SH2B adaptor protein 3 2 2
MIRT638714 FUT11 fucosyltransferase 11 2 2
MIRT638852 CLMP CXADR like membrane protein 2 2
MIRT639815 TMED8 transmembrane p24 trafficking protein family member 8 2 2
MIRT640879 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT640937 FAM129A family with sequence similarity 129 member A 2 2
MIRT640971 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT641642 GNAZ G protein subunit alpha z 2 2
MIRT641931 SLC25A16 solute carrier family 25 member 16 2 2
MIRT642136 CRY2 cryptochrome circadian clock 2 2 2
MIRT643199 JAK3 Janus kinase 3 2 2
MIRT643256 ZNF566 zinc finger protein 566 2 2
MIRT643378 TRIM16L tripartite motif containing 16 like 2 2
MIRT643683 AMER3 APC membrane recruitment protein 3 2 2
MIRT643728 MCMDC2 minichromosome maintenance domain containing 2 2 2
MIRT643949 CCDC141 coiled-coil domain containing 141 2 2
MIRT644915 SERF1B small EDRK-rich factor 1B 2 2
MIRT645163 NOL9 nucleolar protein 9 2 2
MIRT645547 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT645550 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT645572 TACR2 tachykinin receptor 2 2 2
MIRT646697 SERF1A small EDRK-rich factor 1A 2 2
MIRT647806 FRMD8 FERM domain containing 8 2 2
MIRT647903 CIRH1A UTP4, small subunit processome component 2 2
MIRT648978 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT649907 SLFN12L schlafen family member 12 like 2 2
MIRT650224 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT651880 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT651935 UBN1 ubinuclein 1 2 2
MIRT652839 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT652994 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT654800 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655591 OTUD7B OTU deubiquitinase 7B 2 2
MIRT658760 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT659358 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT660717 AMER1 APC membrane recruitment protein 1 2 2
MIRT660737 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT661088 TMEM145 transmembrane protein 145 2 2
MIRT661176 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT662005 ZNF445 zinc finger protein 445 2 2
MIRT662178 KIAA1210 KIAA1210 2 2
MIRT662270 OR51E2 olfactory receptor family 51 subfamily E member 2 2 2
MIRT663046 SLC16A4 solute carrier family 16 member 4 2 2
MIRT663476 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT664039 RPL27A ribosomal protein L27a 2 2
MIRT664096 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT664109 FUT1 fucosyltransferase 1 (H blood group) 2 2
MIRT664317 CD209 CD209 molecule 2 2
MIRT664455 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT664595 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 4
MIRT664694 DBF4 DBF4 zinc finger 2 2
MIRT665162 SF3A1 splicing factor 3a subunit 1 2 2
MIRT665214 RBM22 RNA binding motif protein 22 2 2
MIRT665254 ZNF286B zinc finger protein 286B 2 2
MIRT665268 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT665606 TTC39A tetratricopeptide repeat domain 39A 2 2
MIRT665830 TIMELESS timeless circadian clock 2 2
MIRT666201 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT666546 RNF115 ring finger protein 115 2 2
MIRT666602 REEP3 receptor accessory protein 3 2 2
MIRT666862 POU2F3 POU class 2 homeobox 3 2 4
MIRT666886 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT667158 NRXN3 neurexin 3 2 2
MIRT667252 NEK9 NIMA related kinase 9 2 2
MIRT667419 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT667434 METTL8 methyltransferase like 8 2 2
MIRT668023 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT668062 GPR75 G protein-coupled receptor 75 2 2
MIRT668070 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT668607 EHD4 EH domain containing 4 2 4
MIRT668694 DNAL1 dynein axonemal light chain 1 2 2
MIRT668782 DAAM1 dishevelled associated activator of morphogenesis 1 2 2
MIRT669037 CHEK1 checkpoint kinase 1 2 2
MIRT669044 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT669156 CCNG1 cyclin G1 2 2
MIRT670090 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT670206 SLC24A4 solute carrier family 24 member 4 2 2
MIRT672488 FUS FUS RNA binding protein 2 2
MIRT673830 SLC11A2 solute carrier family 11 member 2 2 2
MIRT675481 VEGFC vascular endothelial growth factor C 2 2
MIRT675634 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT677913 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678420 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678626 OLFML2A olfactomedin like 2A 2 2
MIRT678791 NUPL2 nucleoporin like 2 2 2
MIRT679561 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT680743 CA5B carbonic anhydrase 5B 2 2
MIRT682481 LIX1L limb and CNS expressed 1 like 2 4
MIRT682701 PSMD9 proteasome 26S subunit, non-ATPase 9 2 2
MIRT682759 MDM2 MDM2 proto-oncogene 2 2
MIRT682811 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682847 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT682896 XIAP X-linked inhibitor of apoptosis 2 2
MIRT682916 FAM73A mitoguardin 1 2 2
MIRT682935 ZNF292 zinc finger protein 292 2 2
MIRT682953 RPL12 ribosomal protein L12 2 2
MIRT682972 NF2 neurofibromin 2 2 2
MIRT683033 SUSD5 sushi domain containing 5 2 2
MIRT683081 A1BG alpha-1-B glycoprotein 2 2
MIRT683105 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT686640 TMEM184C transmembrane protein 184C 2 2
MIRT687444 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688401 EMC8 ER membrane protein complex subunit 8 2 2
MIRT688886 C3orf70 chromosome 3 open reading frame 70 2 2
MIRT689148 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 2 2
MIRT689234 RPS19 ribosomal protein S19 2 2
MIRT689306 C5AR2 complement component 5a receptor 2 2 2
MIRT689364 ZNF101 zinc finger protein 101 2 2
MIRT689498 SCARF1 scavenger receptor class F member 1 2 2
MIRT689655 RBM23 RNA binding motif protein 23 2 2
MIRT689897 SOD2 superoxide dismutase 2 2 2
MIRT690150 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT690601 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690805 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT690946 GLG1 golgi glycoprotein 1 2 2
MIRT691388 ATP13A4 ATPase 13A4 2 2
MIRT691408 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT692175 LRRC3C leucine rich repeat containing 3C 2 2
MIRT692235 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693283 GINM1 glycoprotein integral membrane 1 2 2
MIRT693439 TPGS1 tubulin polyglutamylase complex subunit 1 2 2
MIRT693460 HIST1H2AG histone cluster 1 H2A family member g 2 2
MIRT693768 ZNF383 zinc finger protein 383 2 2
MIRT694018 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694236 ZNF749 zinc finger protein 749 2 2
MIRT694321 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694347 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT694430 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT695763 WDR35 WD repeat domain 35 2 2
MIRT696167 TIPIN TIMELESS interacting protein 2 2
MIRT696417 DOCK7 dedicator of cytokinesis 7 2 2
MIRT696543 C3 complement C3 2 2
MIRT696998 CCDC80 coiled-coil domain containing 80 2 2
MIRT697232 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697806 UBXN2A UBX domain protein 2A 2 2
MIRT697944 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT698161 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT698778 STK4 serine/threonine kinase 4 2 2
MIRT700259 RBM12B RNA binding motif protein 12B 2 2
MIRT700970 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT701251 NUP35 nucleoporin 35 2 2
MIRT701607 MYPN myopalladin 2 2
MIRT702457 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702613 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT702691 IRGQ immunity related GTPase Q 2 2
MIRT702934 HMX3 H6 family homeobox 3 2 2
MIRT702991 HERPUD2 HERPUD family member 2 2 2
MIRT703148 GPR137C G protein-coupled receptor 137C 2 2
MIRT703980 EMC1 ER membrane protein complex subunit 1 2 2
MIRT704569 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT705065 C4orf32 family with sequence similarity 241 member A 2 2
MIRT705447 ATL2 atlastin GTPase 2 2 2
MIRT705856 AFF3 AF4/FMR2 family member 3 2 2
MIRT705886 ADIPOR2 adiponectin receptor 2 2 2
MIRT714370 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT715784 PHF12 PHD finger protein 12 2 2
MIRT715864 KIAA0101 PCNA clamp associated factor 2 2
MIRT715947 NUP93 nucleoporin 93 2 2
MIRT716132 THOC5 THO complex 5 2 2
MIRT717084 EBF4 early B-cell factor 4 2 2
MIRT725424 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT736091 GREM1 gremlin 1, DAN family BMP antagonist 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4793 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4793-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4793-3p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4793-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

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