pre-miRNA Information
pre-miRNA hsa-mir-6867   
Genomic Coordinates chr17: 40193597 - 40193663
Description Homo sapiens miR-6867 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6867-3p
Sequence 47| CUCUCCCUCUUUACCCACUAG |67
Evidence Experimental
Experiments Meta-analysis
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM7811173 21 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1403216522 1 dbSNP
rs781776276 3 dbSNP
rs202050374 4 dbSNP
rs367842831 5 dbSNP
rs1223489976 6 dbSNP
rs907256096 9 dbSNP
rs753257137 14 dbSNP
rs757843554 17 dbSNP
rs371369162 18 dbSNP
Putative Targets

Gene Information
Gene Symbol CCR5   
Synonyms CC-CKR-5, CCCKR5, CCR-5, CD195, CKR-5, CKR5, CMKBR5, IDDM22
Description C-C motif chemokine receptor 5 (gene/pseudogene)
Transcript NM_000579   
Other Transcripts NM_001100168   
Expression
Putative miRNA Targets on CCR5
3'UTR of CCR5
(miRNA target sites are highlighted)
>CCR5|NM_000579|3'UTR
   1 CACGGACTCAAGTGGGCTGGTGACCCAGTCAGAGTTGTGCACATGGCTTAGTTTTCATACACAGCCTGGGCTGGGGGTGG
  81 GGTGGGAGAGGTCTTTTTTAAAAGGAAGTTACTGTTATAGAGGGTCTAAGATTCATCCATTTATTTGGCATCTGTTTAAA
 161 GTAGATTAGATCTTTTAAGCCCATCAATTATAGAAAGCCAAATCAAAATATGTTGATGAAAAATAGCAACCTTTTTATCT
 241 CCCCTTCACATGCATCAAGTTATTGACAAACTCTCCCTTCACTCCGAAAGTTCCTTATGTATATTTAAAAGAAAGCCTCA
 321 GAGAATTGCTGATTCTTGAGTTTAGTGATCTGAACAGAAATACCAAAATTATTTCAGAAATGTACAACTTTTTACCTAGT
 401 ACAAGGCAACATATAGGTTGTAAATGTGTTTAAAACAGGTCTTTGTCTTGCTATGGGGAGAAAAGACATGAATATGATTA
 481 GTAAAGAAATGACACTTTTCATGTGTGATTTCCCCTCCAAGGTATGGTTAATAAGTTTCACTGACTTAGAACCAGGCGAG
 561 AGACTTGTGGCCTGGGAGAGCTGGGGAAGCTTCTTAAATGAGAAGGAATTTGAGTTGGATCATCTATTGCTGGCAAAGAC
 641 AGAAGCCTCACTGCAAGCACTGCATGGGCAAGCTTGGCTGTAGAAGGAGACAGAGCTGGTTGGGAAGACATGGGGAGGAA
 721 GGACAAGGCTAGATCATGAAGAACCTTGACGGCATTGCTCCGTCTAAGTCATGAGCTGAGCAGGGAGATCCTGGTTGGTG
 801 TTGCAGAAGGTTTACTCTGTGGCCAAAGGAGGGTCAGGAAGGATGAGCATTTAGGGCAAGGAGACCACCAACAGCCCTCA
 881 GGTCAGGGTGAGGATGGCCTCTGCTAAGCTCAAGGCGTGAGGATGGGAAGGAGGGAGGTATTCGTAAGGATGGGAAGGAG
 961 GGAGGTATTCGTGCAGCATATGAGGATGCAGAGTCAGCAGAACTGGGGTGGATTTGGGTTGGAAGTGAGGGTCAGAGAGG
1041 AGTCAGAGAGAATCCCTAGTCTTCAAGCAGATTGGAGAAACCCTTGAAAAGACATCAAGCACAGAAGGAGGAGGAGGAGG
1121 TTTAGGTCAAGAAGAAGATGGATTGGTGTAAAAGGATGGGTCTGGTTTGCAGAGCTTGAACACAGTCTCACCCAGACTCC
1201 AGGCTGTCTTTCACTGAATGCTTCTGACTTCATAGATTTCCTTCCCATCCCAGCTGAAATACTGAGGGGTCTCCAGGAGG
1281 AGACTAGATTTATGAATACACGAGGTATGAGGTCTAGGAACATACTTCAGCTCACACATGAGATCTAGGTGAGGATTGAT
1361 TACCTAGTAGTCATTTCATGGGTTGTTGGGAGGATTCTATGAGGCAACCACAGGCAGCATTTAGCACATACTACACATTC
1441 AATAAGCATCAAACTCTTAGTTACTCATTCAGGGATAGCACTGAGCAAAGCATTGAGCAAAGGGGTCCCATAGAGGTGAG
1521 GGAAGCCTGAAAAACTAAGATGCTGCCTGCCCAGTGCACACAAGTGTAGGTATCATTTTCTGCATTTAACCGTCAATAGG
1601 CAAAGGGGGGAAGGGACATATTCATTTGGAAATAAGCTGCCTTGAGCCTTAAAACCCACAAAAGTACAATTTACCAGCCT
1681 CCGTATTTCAGACTGAATGGGGGTGGGGGGGGCGCCTTAGGTACTTATTCCAGATGCCTTCTCCAGACAAACCAGAAGCA
1761 ACAGAAAAAATCGTCTCTCCCTCCCTTTGAAATGAATATACCCCTTAGTGTTTGGGTATATTCATTTCAAAGGGAGAGAG
1841 AGAGGTTTTTTTCTGTTCTGTCTCATATGATTGTGCACATACTTGAGACTGTTTTGAATTTGGGGGATGGCTAAAACCAT
1921 CATAGTACAGGTAAGGTGAGGGAATAGTAAGTGGTGAGAACTACTCAGGGAATGAAGGTGTCAGAATAATAAGAGGTGCT
2001 ACTGACTTTCTCAGCCTCTGAATATGAACGGTGAGCATTGTGGCTGTCAGCAGGAAGCAACGAAGGGAAATGTCTTTCCT
2081 TTTGCTCTTAAGTTGTGGAGAGTGCAACAGTAGCATAGGACCCTACCCTCTGGGCCAAGTCAAAGACATTCTGACATCTT
2161 AGTATTTGCATATTCTTATGTATGTGAAAGTTACAAATTGCTTGAAAGAAAATATGCATCTAATAAAAAACACCTTCTAA
2241 AATAAAAAAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gaucAC-CCAUUUCUCCCUCUc 5'
              || | |:|: ||||||| 
Target 5' gtcaTGAGCTGAGCAGGGAGAt 3'
768 - 789 153.00 -11.90
2
miRNA  3' gaucACCCAUUUCUCCCUCUc 5'
              |||| ||:|||||||: 
Target 5' aggaTGGG-AAGGAGGGAGGt 3'
920 - 939 152.00 -22.60
3
miRNA  3' gaucACCCAUUUCUCCCUCUc 5'
              |||| ||:|||||||: 
Target 5' aggaTGGG-AAGGAGGGAGGt 3'
947 - 966 152.00 -22.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30119253 4 COSMIC
COSN31565790 28 COSMIC
COSN30500319 36 COSMIC
COSN5806858 47 COSMIC
COSN26649907 65 COSMIC
COSN30535774 90 COSMIC
COSN14066660 94 COSMIC
COSN30107891 95 COSMIC
COSN8489281 96 COSMIC
COSN20069144 100 COSMIC
COSN30468581 106 COSMIC
COSN30108956 107 COSMIC
COSN30109488 111 COSMIC
COSN30534245 172 COSMIC
COSN30113659 247 COSMIC
COSN15623567 277 COSMIC
COSN31549456 281 COSMIC
COSN30129071 286 COSMIC
COSN31585001 336 COSMIC
COSN30528173 337 COSMIC
COSN30113932 343 COSMIC
COSN27165684 370 COSMIC
COSN15623568 419 COSMIC
COSN31515864 448 COSMIC
COSN30112471 582 COSMIC
COSN30139579 585 COSMIC
COSN31516170 625 COSMIC
COSN31577441 625 COSMIC
COSN15623569 688 COSMIC
COSN30175315 706 COSMIC
COSN30172997 714 COSMIC
COSN30132135 733 COSMIC
COSN15623570 779 COSMIC
COSN31533790 792 COSMIC
COSN19143812 808 COSMIC
COSN7699264 859 COSMIC
COSN15623571 861 COSMIC
COSN24012567 880 COSMIC
COSN28090631 888 COSMIC
COSN30139580 934 COSMIC
COSN30124614 944 COSMIC
COSN25376355 972 COSMIC
COSN30116585 1007 COSMIC
COSN28702119 1019 COSMIC
COSN30528311 1051 COSMIC
COSN24300039 1098 COSMIC
COSN26958357 1235 COSMIC
COSN31519280 1263 COSMIC
COSN26647338 1300 COSMIC
COSN15623572 1303 COSMIC
COSN15623573 1346 COSMIC
COSN8489282 1358 COSMIC
COSN9721071 1369 COSMIC
COSN6768987 1373 COSMIC
COSN26958358 1712 COSMIC
COSN15623574 1713 COSMIC
COSN30125438 1713 COSMIC
COSN15623575 1732 COSMIC
COSN31590814 1778 COSMIC
COSN15623576 1784 COSMIC
COSN229051 1815 COSMIC
COSN31608875 1863 COSMIC
COSN26481894 1867 COSMIC
COSN229050 1889 COSMIC
COSN25267025 1971 COSMIC
COSN26636738 2063 COSMIC
COSN31548177 2087 COSMIC
COSN28437931 2158 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs191297617 4 dbSNP
rs769213005 5 dbSNP
rs776859902 6 dbSNP
rs1193915539 12 dbSNP
rs764761704 17 dbSNP
rs532474349 20 dbSNP
rs540992448 22 dbSNP
rs1205026442 29 dbSNP
rs777009009 36 dbSNP
rs750032774 40 dbSNP
rs1438776850 41 dbSNP
rs544907003 42 dbSNP
rs762613473 47 dbSNP
rs1275613009 61 dbSNP
rs1226938158 62 dbSNP
rs1353907021 63 dbSNP
rs1283227132 65 dbSNP
rs1233385116 73 dbSNP
rs1356739404 74 dbSNP
rs536872608 76 dbSNP
rs1409081962 82 dbSNP
rs1355015549 84 dbSNP
rs867834481 89 dbSNP
rs1330687300 98 dbSNP
rs1001552690 106 dbSNP
rs1413414452 109 dbSNP
rs529752751 110 dbSNP
rs146080174 113 dbSNP
rs950293317 119 dbSNP
rs1409789724 122 dbSNP
rs1181524789 124 dbSNP
rs1481271694 128 dbSNP
rs1045742755 132 dbSNP
rs1235101403 138 dbSNP
rs1219903006 140 dbSNP
rs1451338956 144 dbSNP
rs1035658784 145 dbSNP
rs927305902 154 dbSNP
rs959996868 156 dbSNP
rs1470522583 166 dbSNP
rs1285964479 173 dbSNP
rs1179099070 174 dbSNP
rs1010142611 183 dbSNP
rs569458865 186 dbSNP
rs1434043830 188 dbSNP
rs1349051619 190 dbSNP
rs1054984862 192 dbSNP
rs112622745 195 dbSNP
rs752397660 197 dbSNP
rs1011121512 206 dbSNP
rs1158613973 212 dbSNP
rs978988121 213 dbSNP
rs1042213202 216 dbSNP
rs1189920634 225 dbSNP
rs1477922122 231 dbSNP
rs183840358 238 dbSNP
rs964152239 253 dbSNP
rs1339699622 254 dbSNP
rs1224020034 255 dbSNP
rs998083568 256 dbSNP
rs1469564632 263 dbSNP
rs1029273904 265 dbSNP
rs953749329 274 dbSNP
rs748287465 275 dbSNP
rs976456855 275 dbSNP
rs1286298685 277 dbSNP
rs1217360546 280 dbSNP
rs922268195 281 dbSNP
rs1303932410 282 dbSNP
rs552382275 283 dbSNP
rs570782804 286 dbSNP
rs764395007 287 dbSNP
rs41414147 291 dbSNP
rs1017056005 300 dbSNP
rs1414445021 316 dbSNP
rs962500340 322 dbSNP
rs973283640 330 dbSNP
rs568368266 333 dbSNP
rs1195966272 341 dbSNP
rs866115726 342 dbSNP
rs1038296493 347 dbSNP
rs1261813700 355 dbSNP
rs1245829120 357 dbSNP
rs763665714 358 dbSNP
rs535892345 362 dbSNP
rs143589063 364 dbSNP
rs1202225210 365 dbSNP
rs971625297 368 dbSNP
rs937434983 370 dbSNP
rs1057136344 381 dbSNP
rs1376345865 393 dbSNP
rs1477870478 402 dbSNP
rs575840249 419 dbSNP
rs1010175310 425 dbSNP
rs757414418 431 dbSNP
rs1339730727 436 dbSNP
rs1387358867 437 dbSNP
rs1417958317 442 dbSNP
rs1382939286 454 dbSNP
rs1364318866 457 dbSNP
rs927276137 458 dbSNP
rs543618933 459 dbSNP
rs574715855 468 dbSNP
rs990172616 477 dbSNP
rs1428225764 478 dbSNP
rs1405551298 481 dbSNP
rs914611071 483 dbSNP
rs904450707 487 dbSNP
rs1303300464 492 dbSNP
rs1428789711 497 dbSNP
rs369515918 500 dbSNP
rs1329142366 501 dbSNP
rs1232207340 503 dbSNP
rs1485028306 507 dbSNP
rs1279795999 509 dbSNP
rs1000094225 513 dbSNP
rs1237472087 520 dbSNP
rs1018526953 523 dbSNP
rs746407806 526 dbSNP
rs902385298 531 dbSNP
rs758790885 535 dbSNP
rs1227844755 536 dbSNP
rs1309552359 541 dbSNP
rs1310831411 542 dbSNP
rs1232767238 548 dbSNP
rs976529032 556 dbSNP
rs1051004188 558 dbSNP
rs577174845 559 dbSNP
rs1299169009 590 dbSNP
rs982459097 595 dbSNP
rs540976580 599 dbSNP
rs1451421814 603 dbSNP
rs1162269721 608 dbSNP
rs1006934213 615 dbSNP
rs1417893205 619 dbSNP
rs145725153 621 dbSNP
rs1189416181 627 dbSNP
rs942281977 641 dbSNP
rs973649425 646 dbSNP
rs373926603 653 dbSNP
rs541845196 654 dbSNP
rs937508540 670 dbSNP
rs1263906672 679 dbSNP
rs1057169382 682 dbSNP
rs780507054 684 dbSNP
rs1016614224 687 dbSNP
rs41495153 694 dbSNP
rs1226645493 699 dbSNP
rs142957506 700 dbSNP
rs1042129524 705 dbSNP
rs1308270499 712 dbSNP
rs1393511141 713 dbSNP
rs993960251 714 dbSNP
rs151122728 718 dbSNP
rs1000526601 722 dbSNP
rs1018181334 730 dbSNP
rs1166550773 735 dbSNP
rs375306827 738 dbSNP
rs570721731 751 dbSNP
rs528738443 752 dbSNP
rs1182351157 753 dbSNP
rs1420684767 759 dbSNP
rs971595718 763 dbSNP
rs17765882 765 dbSNP
rs1469128520 773 dbSNP
rs1034564144 780 dbSNP
rs1206919386 783 dbSNP
rs1349966679 784 dbSNP
rs41418945 785 dbSNP
rs41466044 788 dbSNP
rs982516435 793 dbSNP
rs1303178858 802 dbSNP
rs190456231 810 dbSNP
rs1329344896 811 dbSNP
rs1327428384 813 dbSNP
rs1378835950 817 dbSNP
rs528292132 827 dbSNP
rs1455319742 839 dbSNP
rs1393189458 843 dbSNP
rs914604184 848 dbSNP
rs1308008322 858 dbSNP
rs569344707 860 dbSNP
rs539953254 861 dbSNP
rs923775910 865 dbSNP
rs1359538184 869 dbSNP
rs1017021468 876 dbSNP
rs1255133431 878 dbSNP
rs1191254770 888 dbSNP
rs1446528141 909 dbSNP
rs962398258 917 dbSNP
rs773688575 918 dbSNP
rs1343569054 920 dbSNP
rs1280224376 925 dbSNP
rs759552801 926 dbSNP
rs889673627 933 dbSNP
rs942653235 944 dbSNP
rs41345848 945 dbSNP
rs141257116 947 dbSNP
rs993914395 950 dbSNP
rs1383400404 953 dbSNP
rs1025358229 958 dbSNP
rs906957203 962 dbSNP
rs200501663 971 dbSNP
rs1435140657 972 dbSNP
rs1243934892 977 dbSNP
rs1003011434 985 dbSNP
rs1034541077 986 dbSNP
rs201290180 987 dbSNP
rs990447158 988 dbSNP
rs199648605 991 dbSNP
rs775479176 999 dbSNP
rs977396948 1009 dbSNP
rs1800874 1019 dbSNP
rs946138055 1028 dbSNP
rs200364389 1029 dbSNP
rs1041770168 1031 dbSNP
rs1486869706 1031 dbSNP
rs1271386850 1032 dbSNP
rs954806119 1034 dbSNP
rs1444219059 1035 dbSNP
rs986574013 1040 dbSNP
rs1338411546 1042 dbSNP
rs201423367 1045 dbSNP
rs1270356449 1051 dbSNP
rs186889269 1057 dbSNP
rs1352979560 1064 dbSNP
rs1292624573 1066 dbSNP
rs936011928 1071 dbSNP
rs1040048384 1075 dbSNP
rs1038328361 1076 dbSNP
rs752632377 1077 dbSNP
rs919840033 1078 dbSNP
rs554321754 1080 dbSNP
rs1409137815 1082 dbSNP
rs1382998360 1083 dbSNP
rs146926765 1092 dbSNP
rs1474284595 1109 dbSNP
rs562961861 1111 dbSNP
rs1050919580 1116 dbSNP
rs1339360117 1117 dbSNP
rs1476495566 1126 dbSNP
rs574954754 1132 dbSNP
rs1228862216 1136 dbSNP
rs137866928 1147 dbSNP
rs1016681353 1156 dbSNP
rs1316480918 1163 dbSNP
rs41535253 1167 dbSNP
rs1001866233 1176 dbSNP
rs1484383515 1177 dbSNP
rs1233363577 1180 dbSNP
rs1180335941 1181 dbSNP
rs754123884 1188 dbSNP
rs1255634585 1190 dbSNP
rs1033279325 1195 dbSNP
rs1441210591 1204 dbSNP
rs528671807 1205 dbSNP
rs1429141573 1207 dbSNP
rs1194311028 1209 dbSNP
rs1331153903 1210 dbSNP
rs958964822 1212 dbSNP
rs1393980808 1231 dbSNP
rs41526948 1235 dbSNP
rs765388021 1242 dbSNP
rs1406433773 1244 dbSNP
rs77024144 1247 dbSNP
rs754748129 1251 dbSNP
rs967561308 1252 dbSNP
rs1406501247 1253 dbSNP
rs1235014084 1266 dbSNP
rs1467319577 1267 dbSNP
rs879705496 1268 dbSNP
rs1466914675 1269 dbSNP
rs1012242294 1273 dbSNP
rs1300699985 1281 dbSNP
rs750437295 1282 dbSNP
rs1213779912 1284 dbSNP
rs926039474 1295 dbSNP
rs758992399 1300 dbSNP
rs562220468 1301 dbSNP
rs529611447 1302 dbSNP
rs780412321 1303 dbSNP
rs1284406463 1309 dbSNP
rs1438434558 1317 dbSNP
rs550958125 1323 dbSNP
rs1208302078 1324 dbSNP
rs954775527 1329 dbSNP
rs1343460340 1331 dbSNP
rs1158452744 1332 dbSNP
rs921227972 1333 dbSNP
rs1401840181 1336 dbSNP
rs1410800948 1340 dbSNP
rs1486251240 1345 dbSNP
rs933906115 1354 dbSNP
rs747440437 1357 dbSNP
rs1261088416 1366 dbSNP
rs755342260 1373 dbSNP
rs546490087 1377 dbSNP
rs781480048 1385 dbSNP
rs963872977 1397 dbSNP
rs201417500 1399 dbSNP
rs3188094 1400 dbSNP
rs190094030 1404 dbSNP
rs1288059780 1409 dbSNP
rs551901023 1410 dbSNP
rs1346831955 1411 dbSNP
rs929893642 1420 dbSNP
rs1221205878 1425 dbSNP
rs181602248 1428 dbSNP
rs1434628268 1431 dbSNP
rs185327310 1432 dbSNP
rs1046745059 1437 dbSNP
rs928312880 1439 dbSNP
rs1288436759 1449 dbSNP
rs1431560095 1450 dbSNP
rs1347473549 1457 dbSNP
rs1002336871 1462 dbSNP
rs1033308638 1471 dbSNP
rs896121800 1473 dbSNP
rs534497551 1475 dbSNP
rs1434517809 1477 dbSNP
rs1396015023 1478 dbSNP
rs770453936 1479 dbSNP
rs1175891770 1481 dbSNP
rs1014493775 1482 dbSNP
rs1416941941 1482 dbSNP
rs1485870901 1490 dbSNP
rs1419907865 1493 dbSNP
rs1299542292 1497 dbSNP
rs553155294 1500 dbSNP
rs1399994393 1512 dbSNP
rs1048115 1514 dbSNP
rs1211972017 1518 dbSNP
rs1306045047 1527 dbSNP
rs1295058165 1529 dbSNP
rs967971747 1536 dbSNP
rs1304225786 1541 dbSNP
rs1291999695 1551 dbSNP
rs1414766118 1557 dbSNP
rs1376559446 1558 dbSNP
rs1055589703 1566 dbSNP
rs894221170 1576 dbSNP
rs1370190274 1577 dbSNP
rs1011714673 1593 dbSNP
rs1352413940 1602 dbSNP
rs1043630093 1603 dbSNP
rs141737357 1607 dbSNP
rs745351514 1610 dbSNP
rs1474880188 1611 dbSNP
rs1030276919 1612 dbSNP
rs41442546 1618 dbSNP
rs1007974539 1623 dbSNP
rs1479495221 1634 dbSNP
rs1017654850 1646 dbSNP
rs1205422850 1656 dbSNP
rs1320240781 1659 dbSNP
rs1487995327 1660 dbSNP
rs933979640 1665 dbSNP
rs1215821236 1670 dbSNP
rs775569353 1676 dbSNP
rs1247145886 1679 dbSNP
rs760628369 1683 dbSNP
rs1315372749 1684 dbSNP
rs963809196 1690 dbSNP
rs1372993708 1693 dbSNP
rs1299080595 1699 dbSNP
rs1162247047 1705 dbSNP
rs1402022244 1705 dbSNP
rs939905165 1705 dbSNP
rs556971174 1706 dbSNP
rs1439997164 1707 dbSNP
rs776525395 1708 dbSNP
rs1177535073 1710 dbSNP
rs574892806 1712 dbSNP
rs951261805 1713 dbSNP
rs1213157379 1714 dbSNP
rs190136403 1715 dbSNP
rs1267778590 1718 dbSNP
rs376306118 1721 dbSNP
rs778460868 1722 dbSNP
rs896193731 1723 dbSNP
rs938290724 1725 dbSNP
rs1166154074 1731 dbSNP
rs1352071675 1739 dbSNP
rs1024539428 1744 dbSNP
rs991573434 1754 dbSNP
rs1451589330 1763 dbSNP
rs1363151475 1766 dbSNP
rs999476047 1771 dbSNP
rs182052831 1773 dbSNP
rs750574519 1774 dbSNP
rs947143829 1776 dbSNP
rs41512547 1780 dbSNP
rs1203463732 1797 dbSNP
rs758536268 1803 dbSNP
rs1261770643 1812 dbSNP
rs568854883 1815 dbSNP
rs1246752777 1831 dbSNP
rs1300828132 1834 dbSNP
rs934910585 1837 dbSNP
rs1233170379 1838 dbSNP
rs529519962 1839 dbSNP
rs1325030663 1841 dbSNP
rs1380015399 1846 dbSNP
rs1384180775 1847 dbSNP
rs551297914 1848 dbSNP
rs1292087600 1854 dbSNP
rs1323472441 1856 dbSNP
rs955387696 1859 dbSNP
rs746492 1861 dbSNP
rs200688955 1863 dbSNP
rs755432048 1867 dbSNP
rs1180130738 1868 dbSNP
rs1379574322 1870 dbSNP
rs1018037980 1871 dbSNP
rs908516389 1872 dbSNP
rs186138215 1875 dbSNP
rs781570167 1881 dbSNP
rs1219374703 1884 dbSNP
rs192256035 1889 dbSNP
rs1280123681 1892 dbSNP
rs866521846 1893 dbSNP
rs1345354199 1905 dbSNP
rs566824961 1911 dbSNP
rs1404162318 1914 dbSNP
rs1224618775 1940 dbSNP
rs1325311960 1949 dbSNP
rs1026810705 1959 dbSNP
rs919804878 1974 dbSNP
rs1401809896 1980 dbSNP
rs1401496166 1981 dbSNP
rs937843865 1994 dbSNP
rs1312111779 2010 dbSNP
rs534316499 2026 dbSNP
rs982616201 2028 dbSNP
rs1035574269 2030 dbSNP
rs184040468 2031 dbSNP
rs1461562288 2032 dbSNP
rs1042071256 2040 dbSNP
rs1195899628 2041 dbSNP
rs370386700 2047 dbSNP
rs535314315 2053 dbSNP
rs1257420339 2056 dbSNP
rs570463527 2058 dbSNP
rs1444424745 2062 dbSNP
rs756987625 2063 dbSNP
rs1193667997 2064 dbSNP
rs188577829 2074 dbSNP
rs1288977159 2076 dbSNP
rs1318379891 2086 dbSNP
rs978516613 2087 dbSNP
rs912262083 2098 dbSNP
rs1292525973 2100 dbSNP
rs1448517684 2104 dbSNP
rs893330800 2105 dbSNP
rs924365789 2108 dbSNP
rs934795954 2110 dbSNP
rs1401301134 2117 dbSNP
rs374785441 2119 dbSNP
rs1459890665 2123 dbSNP
rs1255890706 2127 dbSNP
rs1417781600 2129 dbSNP
rs997004635 2131 dbSNP
rs1473991465 2134 dbSNP
rs1231567945 2140 dbSNP
rs1181530617 2148 dbSNP
rs1457086484 2150 dbSNP
rs1051893584 2153 dbSNP
rs1199986505 2156 dbSNP
rs1457069989 2181 dbSNP
rs890684227 2184 dbSNP
rs1187807384 2198 dbSNP
rs943639762 2206 dbSNP
rs1289084331 2212 dbSNP
rs1471489609 2216 dbSNP
rs541816244 2225 dbSNP
rs955460524 2225 dbSNP
rs1358346595 2226 dbSNP
rs1181793416 2238 dbSNP
rs1441195154 2245 dbSNP
rs1377948505 2246 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb HITS-CLIP data was present in GSM1084066. RNA binding protein: AGO2. Condition:CLIP_noemetine_SantaCruzAb HITS-CLIP data was present in GSM1084079. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000292303.4 | 3UTR | CAAAGGGAGAGAGAGAGGUUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084066
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_SantaCruzAb
Location of target site ENST00000292303.4 | 3UTR | AAAGGGAGAGAGAGAGGUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084079
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_AbnovaAb
Location of target site ENST00000292303.4 | 3UTR | AAAGGGAGAGAGAGAGGUUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
203 hsa-miR-6867-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT078229 DYNLL2 dynein light chain LC8-type 2 2 2
MIRT107799 SLC1A1 solute carrier family 1 member 1 2 2
MIRT115808 CAPN15 calpain 15 2 2
MIRT137570 RCOR1 REST corepressor 1 2 2
MIRT161372 MBNL1 muscleblind like splicing regulator 1 2 2
MIRT320477 HOXA10 homeobox A10 2 2
MIRT444449 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT461305 MRPS27 mitochondrial ribosomal protein S27 2 6
MIRT470306 PPP6R1 protein phosphatase 6 regulatory subunit 1 2 2
MIRT471679 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT475546 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 2 2
MIRT480901 BCL2L2-PABPN1 BCL2L2-PABPN1 readthrough 2 2
MIRT489368 RAB11B RAB11B, member RAS oncogene family 2 2
MIRT489557 PLD6 phospholipase D family member 6 2 2
MIRT494969 TMEM233 transmembrane protein 233 2 2
MIRT496634 SLC46A1 solute carrier family 46 member 1 2 2
MIRT500259 ZNF788 zinc finger family member 788 2 6
MIRT500272 ZNF781 zinc finger protein 781 2 8
MIRT500328 ZNF487P zinc finger protein 487 1 3
MIRT504012 ACSL6 acyl-CoA synthetase long chain family member 6 2 2
MIRT504830 EREG epiregulin 2 2
MIRT513588 DCTN6 dynactin subunit 6 2 2
MIRT520896 STMN1 stathmin 1 2 2
MIRT525275 C18orf32 chromosome 18 open reading frame 32 2 2
MIRT526166 ANKRD65 ankyrin repeat domain 65 2 2
MIRT526582 CCDC43 coiled-coil domain containing 43 2 2
MIRT527812 TMEM74B transmembrane protein 74B 2 2
MIRT528141 LRRC38 leucine rich repeat containing 38 2 2
MIRT529903 C1orf64 steroid receptor associated and regulated protein 2 4
MIRT531980 SLCO1B3 solute carrier organic anion transporter family member 1B3 2 2
MIRT532251 TBPL2 TATA-box binding protein like 2 2 2
MIRT534300 SKIDA1 SKI/DACH domain containing 1 2 2
MIRT534879 QKI QKI, KH domain containing RNA binding 2 2
MIRT538305 CSNK2A1 casein kinase 2 alpha 1 2 2
MIRT539385 ADRB1 adrenoceptor beta 1 2 2
MIRT541304 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT543960 RNF20 ring finger protein 20 2 2
MIRT544380 ZNF266 zinc finger protein 266 2 2
MIRT544451 KRBOX4 KRAB box domain containing 4 2 2
MIRT545783 ZNF791 zinc finger protein 791 2 4
MIRT548156 FRAT2 FRAT2, WNT signaling pathway regulator 2 2
MIRT556660 KMT2D lysine methyltransferase 2D 2 4
MIRT557715 GABARAPL1 GABA type A receptor associated protein like 1 2 2
MIRT562701 ZNF415 zinc finger protein 415 2 2
MIRT563050 ZNF138 zinc finger protein 138 2 2
MIRT564307 CCNT1 cyclin T1 2 2
MIRT568333 BACH1 BTB domain and CNC homolog 1 2 2
MIRT570864 ZNF525 zinc finger protein 525 2 2
MIRT570874 ZFP1 ZFP1 zinc finger protein 2 2
MIRT571516 ZNF625 zinc finger protein 625 2 2
MIRT572470 MTMR10 myotubularin related protein 10 2 2
MIRT572898 RUNDC3B RUN domain containing 3B 2 2
MIRT573084 APLN apelin 2 2
MIRT575251 Timp3 tissue inhibitor of metalloproteinase 3 2 2
MIRT575275 Mapk8ip2 mitogen-activated protein kinase 8 interacting protein 2 2 2
MIRT607230 LINS lines homolog 1 2 4
MIRT611803 FCRL4 Fc receptor like 4 2 2
MIRT612669 POU2F1 POU class 2 homeobox 1 2 4
MIRT612739 MYOCD myocardin 2 2
MIRT613409 CDH8 cadherin 8 2 4
MIRT614007 PAOX polyamine oxidase 2 2
MIRT615188 CLUAP1 clusterin associated protein 1 2 2
MIRT616497 ATP6AP1L ATPase H+ transporting accessory protein 1 like 2 2
MIRT616524 URM1 ubiquitin related modifier 1 2 2
MIRT617066 SPIB Spi-B transcription factor 2 2
MIRT617813 EMX2 empty spiracles homeobox 2 2 2
MIRT619291 FAM26E calcium homeostasis modulator family member 5 2 2
MIRT619375 KLHL12 kelch like family member 12 2 2
MIRT619499 TXLNB taxilin beta 2 2
MIRT619601 MKKS McKusick-Kaufman syndrome 2 2
MIRT619754 MYO1F myosin IF 2 2
MIRT619976 ZSCAN22 zinc finger and SCAN domain containing 22 2 2
MIRT620743 CCR5 C-C motif chemokine receptor 5 (gene/pseudogene) 2 2
MIRT620871 KCTD7 potassium channel tetramerization domain containing 7 2 2
MIRT621380 CLNK cytokine dependent hematopoietic cell linker 2 2
MIRT621511 ZNF638 zinc finger protein 638 2 2
MIRT621537 ZNF500 zinc finger protein 500 2 2
MIRT621772 TMEM87B transmembrane protein 87B 2 2
MIRT622193 SLC5A12 solute carrier family 5 member 12 2 2
MIRT622319 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT622738 PITPNM3 PITPNM family member 3 2 2
MIRT622996 ONECUT3 one cut homeobox 3 2 2
MIRT625301 SHISA6 shisa family member 6 2 2
MIRT625637 KCNQ3 potassium voltage-gated channel subfamily Q member 3 2 2
MIRT627698 RFFL ring finger and FYVE like domain containing E3 ubiquitin protein ligase 2 2
MIRT627751 RAD51L3-RFFL RAD51L3-RFFL readthrough 2 2
MIRT628438 ANTXR2 anthrax toxin receptor 2 2 2
MIRT635440 SLC25A44 solute carrier family 25 member 44 2 2
MIRT637166 TMEM50A transmembrane protein 50A 2 2
MIRT638207 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT639288 TFAP2A transcription factor AP-2 alpha 2 4
MIRT639398 NEURL1B neuralized E3 ubiquitin protein ligase 1B 2 2
MIRT641230 SEMA3E semaphorin 3E 2 2
MIRT641501 STC2 stanniocalcin 2 2 2
MIRT642577 PSTPIP1 proline-serine-threonine phosphatase interacting protein 1 2 2
MIRT642735 TDRD6 tudor domain containing 6 2 2
MIRT644001 PPP1R3G protein phosphatase 1 regulatory subunit 3G 2 2
MIRT644210 CBS cystathionine-beta-synthase 2 2
MIRT645405 FAM110A family with sequence similarity 110 member A 2 2
MIRT645685 TBC1D13 TBC1 domain family member 13 2 2
MIRT645699 C1orf50 chromosome 1 open reading frame 50 2 2
MIRT645761 SURF6 surfeit 6 2 2
MIRT645826 INADL PATJ, crumbs cell polarity complex component 2 2
MIRT645914 PLXNA3 plexin A3 2 2
MIRT646167 PTPN14 protein tyrosine phosphatase, non-receptor type 14 2 2
MIRT646634 COA4 cytochrome c oxidase assembly factor 4 homolog 2 2
MIRT647547 CYP2B6 cytochrome P450 family 2 subfamily B member 6 2 2
MIRT648262 ZNF582 zinc finger protein 582 2 2
MIRT648385 ZNF22 zinc finger protein 22 2 2
MIRT648629 LEMD2 LEM domain containing 2 2 2
MIRT649353 SLC27A2 solute carrier family 27 member 2 2 2
MIRT649395 SH2D4A SH2 domain containing 4A 2 2
MIRT650241 CD68 CD68 molecule 2 2
MIRT650379 PTGIS prostaglandin I2 synthase 2 2
MIRT650705 KRT32 keratin 32 2 2
MIRT650854 UNC13D unc-13 homolog D 2 2
MIRT651042 ZNF644 zinc finger protein 644 2 2
MIRT651102 ZNF48 zinc finger protein 48 2 2
MIRT651130 ZNF398 zinc finger protein 398 2 2
MIRT652089 TSKU tsukushi, small leucine rich proteoglycan 2 2
MIRT652200 TRIM33 tripartite motif containing 33 2 2
MIRT652422 TMEM239 transmembrane protein 239 2 2
MIRT652755 TET3 tet methylcytosine dioxygenase 3 2 2
MIRT653201 SP9 Sp9 transcription factor 2 2
MIRT653338 SMG7 SMG7, nonsense mediated mRNA decay factor 2 2
MIRT653715 SLC25A32 solute carrier family 25 member 32 2 2
MIRT654456 RAP2B RAP2B, member of RAS oncogene family 2 2
MIRT654499 RABIF RAB interacting factor 2 2
MIRT654678 PSMB5 proteasome subunit beta 5 2 2
MIRT655162 PHF20L1 PHD finger protein 20 like 1 2 2
MIRT655540 PADI2 peptidyl arginine deiminase 2 2 4
MIRT655850 NFE2L1 nuclear factor, erythroid 2 like 1 2 2
MIRT656248 MEX3A mex-3 RNA binding family member A 2 2
MIRT656581 LSAMP limbic system-associated membrane protein 2 2
MIRT657597 GRID1 glutamate ionotropic receptor delta type subunit 1 2 2
MIRT657824 GJD3 gap junction protein delta 3 2 2
MIRT658466 FAM102B family with sequence similarity 102 member B 2 2
MIRT659083 DENR density regulated re-initiation and release factor 2 2
MIRT659196 CYBB cytochrome b-245 beta chain 2 2
MIRT659558 CGGBP1 CGG triplet repeat binding protein 1 2 2
MIRT659860 CAPRIN1 cell cycle associated protein 1 2 2
MIRT660172 BNC2 basonuclin 2 2 2
MIRT660626 ANKRD52 ankyrin repeat domain 52 2 2
MIRT660917 ADAM19 ADAM metallopeptidase domain 19 2 2
MIRT660979 ABHD2 abhydrolase domain containing 2 2 2
MIRT661564 EPHX2 epoxide hydrolase 2 2 2
MIRT662214 CCRL2 C-C motif chemokine receptor like 2 2 2
MIRT662246 C15orf52 chromosome 15 open reading frame 52 2 2
MIRT662560 IL2RA interleukin 2 receptor subunit alpha 2 2
MIRT662591 MAGEB4 MAGE family member B4 2 2
MIRT663294 TECPR2 tectonin beta-propeller repeat containing 2 2 2
MIRT663437 FBXO2 F-box protein 2 2 2
MIRT663811 RNF128 ring finger protein 128, E3 ubiquitin protein ligase 2 2
MIRT663821 NLRP12 NLR family pyrin domain containing 12 2 2
MIRT665959 SZRD1 SUZ RNA binding domain containing 1 2 2
MIRT666115 SRRM4 serine/arginine repetitive matrix 4 2 2
MIRT667448 MAPK14 mitogen-activated protein kinase 14 2 2
MIRT669330 BSND barttin CLCNK type accessory beta subunit 2 2
MIRT669409 ATP9A ATPase phospholipid transporting 9A (putative) 2 2
MIRT669641 ACSBG1 acyl-CoA synthetase bubblegum family member 1 2 2
MIRT672663 GTF2H5 general transcription factor IIH subunit 5 2 2
MIRT673266 RUNDC1 RUN domain containing 1 2 2
MIRT676995 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT679290 SSBP2 single stranded DNA binding protein 2 2 2
MIRT687508 NCKAP1 NCK associated protein 1 2 2
MIRT698932 SPATA2 spermatogenesis associated 2 2 2
MIRT700852 PERP PERP, TP53 apoptosis effector 2 2
MIRT702426 KIAA1958 KIAA1958 2 2
MIRT703939 EPB41L1 erythrocyte membrane protein band 4.1 like 1 2 2
MIRT708962 SLC12A3 solute carrier family 12 member 3 2 2
MIRT709742 UBD ubiquitin D 2 2
MIRT709946 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT711121 CYYR1 cysteine and tyrosine rich 1 2 2
MIRT711217 RETSAT retinol saturase 2 2
MIRT711576 ASPA aspartoacylase 2 2
MIRT711599 LHX5 LIM homeobox 5 2 2
MIRT712232 RCC2 regulator of chromosome condensation 2 2 2
MIRT713317 TMEM44 transmembrane protein 44 2 2
MIRT713510 PAFAH2 platelet activating factor acetylhydrolase 2 2 2
MIRT713543 GJB1 gap junction protein beta 1 2 2
MIRT713621 MED8 mediator complex subunit 8 2 2
MIRT714988 TSPAN11 tetraspanin 11 2 2
MIRT715449 PTCD1 pentatricopeptide repeat domain 1 2 2
MIRT715575 ATP5J2-PTCD1 ATP5J2-PTCD1 readthrough 2 2
MIRT715771 DDX42 DEAD-box helicase 42 2 2
MIRT715887 GNG2 G protein subunit gamma 2 2 2
MIRT716091 HARS histidyl-tRNA synthetase 2 2
MIRT717403 ZCCHC24 zinc finger CCHC-type containing 24 2 2
MIRT717965 PXMP4 peroxisomal membrane protein 4 2 2
MIRT718324 METTL7A methyltransferase like 7A 2 2
MIRT718628 DIP2A disco interacting protein 2 homolog A 2 2
MIRT719213 CAMK4 calcium/calmodulin dependent protein kinase IV 2 2
MIRT719234 CYSLTR2 cysteinyl leukotriene receptor 2 2 2
MIRT719817 LRRC4 leucine rich repeat containing 4 2 2
MIRT719978 MAPK1 mitogen-activated protein kinase 1 2 2
MIRT720480 TMEM178B transmembrane protein 178B 2 2
MIRT720713 RAPGEF6 Rap guanine nucleotide exchange factor 6 2 2
MIRT721006 ZNF619 zinc finger protein 619 2 2
MIRT721741 SDK2 sidekick cell adhesion molecule 2 2 2
MIRT723547 ZDHHC22 zinc finger DHHC-type containing 22 2 2
MIRT723596 FKRP fukutin related protein 2 2
MIRT723746 AIFM2 apoptosis inducing factor, mitochondria associated 2 2 2
MIRT724784 C1D C1D nuclear receptor corepressor 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-6867-3p Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)

Error report submission