pre-miRNA Information
pre-miRNA hsa-mir-6818   
Genomic Coordinates chr22: 30007049 - 30007113
Description Homo sapiens miR-6818 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6818-3p
Sequence 44| UUGUCUCUUGUUCCUCACACAG |65
Evidence Experimental
Experiments Meta-analysis
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1325627700 2 dbSNP
rs750902684 3 dbSNP
rs756542190 6 dbSNP
rs1365035732 17 dbSNP
Putative Targets

Gene Information
Gene Symbol LRRTM2   
Synonyms -
Description leucine rich repeat transmembrane neuronal 2
Transcript NM_015564   
Expression
Putative miRNA Targets on LRRTM2
3'UTR of LRRTM2
(miRNA target sites are highlighted)
>LRRTM2|NM_015564|3'UTR
   1 TATCTACCCATCATCAAAAATCACATCAGATAAGTAACCTATTTTACATAGTAGAGGCTAAATACATATCTAATTTTTAC
  81 CAATGGTGACATTAAGCCTAATTTTCCAAACTAAGTGGAGACTTAGTTTTTGAAGTGTTGAAGTATTTTTAATTTTTTAA
 161 ATGAAACCATATTTTAAGTGTTAAATGAATCAATGCTCACATTAATTTGCACTCCTGTTGGAAAGTCTAAAATGCTTACT
 241 TCAAAATAAGAAATGTATGTAATTATATACAATCGTGTGTAAACCTTTACACTAAGGTCTCCATATACTATTTTTTTCTA
 321 CTGAAAACAATTTAGAAAGAAGCTATTGGGCAGAAACAGATATAGATCAATACCTGTTTGATCACTGCTCTCCATCCCAT
 401 GTACCACAACTATCTTGCTGCTTAAAAGGAGACTTAGTAAAGTTCTCTTGTATGATAATTTGGTATTTACTCAAATCTTC
 481 AATTTCTTGCCAGGGTGGGAAGTAGAATTTCATGTATGCTGAAGACTGGTAAATATTAAACATTCTCCTTCCAGAGTTTC
 561 TGCCTGGGTTAGTAGATATTATCAAAGTCCATATCATGAATTCAGAACCCTTTAATGTAATTCTAATAAGCTGAGTGACT
 641 CTTTAATATATTTACACAATGAATCCAAGTGACTGTGAAAAGGTCTCATTACAATGAAACCAATCCTAAATAATTACACC
 721 AACTTCTTATACATTTCTCGTTTGACTTATAATGGACATGATTTTTGTGGCATTTAGACAACTGTTTTAAACTAGCATTA
 801 AACTGTCATTGTACTAATTAATGTACTAAATCCTATGTTTACATTAATATGTGAAAAAAGATTTAGAAGATATTTTGGAG
 881 ATAAACAAGACAAACTGAGTCAATTTAACAATCCTGACATGCTCCCTCCAATTTAAAAGCGCACACACACACACACACAC
 961 ACACACACACACACACACACACTCTCGCGCTCTCTCTCTCAACTATCATGATCAAAGATGCCTTGACAAAGGGGTTTAAA
1041 CCTCTTTCTTCTGCTTTTTCCTGATCTTCAAACCTCAAAGAGCCAAGTTAAAAATAATTGGCTAGCAACAGGCTTAACAC
1121 TGATTCTTATTGTATTACAAAGGAACCATGAAAAAAAACACTTTCCAACTATTATATAATACATTTCGATCTTTCAATAA
1201 AGATACGCATTCACGCTGTAAGTGTAGTTCAGTGTAGGTGAAGAAAACAGCACCACTGAGATGAATCTCATGGCAGAACA
1281 ACTCGACATGCCTATGCAGCCACACAGTGGTAACTTGAAGGCAGCACAGAGGTGAGGGATTAAAAGGAAAGGCAGATTTT
1361 GAAATCTGACTCTCAGGTTAGCTGGAGTTACAAGGCAGCCAACAATGATTATACACAATCTGCACCAAACAGGGAAAGGA
1441 CCTGCTGCTGAAAAGGGAAGAGGGGTAGATCCTCCAATGTAAATATAAACATGCCATAGTTAACAAATGATAAGGATGCC
1521 ACATTTTTCATGCAGAAAAGAACCACAGGTATTCAGTTTCTTGTATTATGATTTCTAAAGAAAACCTATTAAATATTTGG
1601 AATTTAGATGCAAGCTACTCATTCACACAGAACTTTTCCATAAACATTGTTCCACATATTGAAAAAACTGTAAAATTATA
1681 GCACTAACTTGATTTTAGAAAATGAGCATTTTTTACAACTGCCATTTACTGTATGTAGAAAAAAGACATAAAACCTTAGA
1761 GAAAGCCACTACCATTTTTCAAGTTATCTTTTCCCCAACATCAACATCAACATGATATCCTTCATTCAGGGCATATTTTT
1841 TCTTCCCAGGATCAAACTGAAAACATGTTAAGGCTATAGTTTAGCCAGTAAGATTTAATCACAATTTTTCTTCTTTAATA
1921 CTAAGAGATGGGTACCTTAGTACCCTTCACCTAACATCTCTCGGTAAAAAGCAGACAAGATCACAAATTACAGTAAAAAT
2001 GTGCTCTTTTTTAAGGTGGGCAGATTAGTTTGTCAAAGTCTCAGCCCAGTTCAATTCAGTTGATCTCGAGTGGTGAGTAT
2081 TTTGTCTCTTGTTAAACCAGACCCTGGGCTTGTCTGGGCAGAGACAGAAGCTGATTTAACAGCATAGAGCACAGCGCCCT
2161 ACTTCCCCACAGACAGGCTGAATTAGAAGCCCCTATTACAAATAAGAGCACCACGAGCTAAAATTTACCAACCCATTTAT
2241 CAGGATGACCATTGCCATTTGTCAGGTGACAGACAGCTTGGTCACAACACAACTGTGTCCTGAGCACACAAGATTCCATC
2321 AGCCCTGAAGGACAGCAGAGGAGTATTTTCCATCATTTCAAACCACAAACAAAATTAAGATTTAAACTGTGGGATGGGTA
2401 AGAAATCCCCTTCTTTGGCTGGGAATCTCCACCTTAATCCTTAAAGGACCATAACTGGCAAAATCCTTAGTGTACGGACA
2481 AAAGCAAATTGGAAAAGCCAGCCATTTACTAATTCAGAGGAACAGCATAGCCAAGGCTAGCGAGGCATACTTTCCAGTTG
2561 AAAAAAATCAAAATTTTTTGCCTTCCATTTTTCTGGGTAATGTCCTTTAAGAAAAGTGAATGACAGTAGTACCAAAAAGG
2641 TATTTTCCTTTCTCATTTAAAAGCAAAAACCTCCCTTTTTAATTGCCTGTAGAAGGCAAGATTTTCTTTCATTTTTGTCC
2721 ATTTGTGTTTCAGAATCAGCACAGGTTTGAAGATTAGACTGTTAGTCATCTGTGCTTTCTTTACCAACTGGCTAGAACGG
2801 AACAGCATCACAGCAACGCTGCGGATCTTGGTTACACAGTGTCAGAGCTTTTGTTTTTTGATGGGGTTTTATCCTCTTCA
2881 CCACCACTACCCACTCCATTTTTTTTCTATTTTTAAGATTAGAGGAAAATGACCATTAAGAACCAGAAAAATAATTAATC
2961 TCTCTGGAAAAAGGAAAGCTAAAGAAGACTATGATACCATACCCATCTAGAAACCAAGAACTAGTTTGAAATCGTTTATA
3041 TTCATTTCTGTAGCATGACAGGGATTTCAATCACCTTTCTGAAAAGAGTGGGCTGATAAACTTGTAAATCCACACACAAC
3121 TCTGAGAATACCCACTGCCAGCATCAAAAAGCAAAGATACTAATTTTTTAAGCCAAAAATCTGTACTAACACATGTAATT
3201 TCTTAATGTGCCTAAGTTAATTTCTGTATCAATTCAATAAATGGAATTGACTGAACTTCCCAACGCCACTAATTATTAAA
3281 ATCCATCTGCTTATTCTAATGCTAGTCACCAAGAGCTAGACTCCATCTTTCCAATAAAAATGAGCCCTATGTAGCACTAG
3361 GTTTGAATTCTAAAATTCAAAACAGGCATTTCATTTTCTTAAGGCACACTTCCTACACACAGCTATCAGGGGAAAAAGCT
3441 ATAAATGTCCTGTTCTTTTTCTGAAGTGTGGATATCAATATAAAATTTGTTAAAGAATATTTTTAACAGCTGACTTACAT
3521 GATCGTTTTCCTAATACAGGAATACAGCGACAGACCTATCTGAAAAGTCTGTTTGGGGGCATACTTTTCATATCTTATTG
3601 ACTAAAGCCCTTGAGCCAGG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gacACACUCCUUGUUCUCUGUu 5'
             |||  || :| ||||||| 
Target 5' gctTGTCTGG-GC-AGAGACAg 3'
2108 - 2127 149.00 -15.10
2
miRNA  3' gaCACACUCCUUGUUCUCUGUu 5'
            || ||  ||| || ||||| 
Target 5' ctGTATGTAGAA-AAAAGACAt 3'
1729 - 1749 131.00 -10.10
3
miRNA  3' gacacacUCCUUGU-UCUCUGUu 5'
                 |||||:| || |||| 
Target 5' ctaatacAGGAATACAGCGACAg 3'
3531 - 3553 131.00 -12.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
223765 3762 ClinVar
COSN30117221 50 COSMIC
COSN31516740 85 COSMIC
COSN22248275 93 COSMIC
COSN30479171 122 COSMIC
COSN31611657 143 COSMIC
COSN14687184 258 COSMIC
COSN26506747 275 COSMIC
COSN31566147 359 COSMIC
COSN22067196 415 COSMIC
COSN31565328 486 COSMIC
COSN21771425 623 COSMIC
COSN31523501 683 COSMIC
COSN16892219 922 COSMIC
COSN19323877 940 COSMIC
COSN23881796 940 COSMIC
COSN20101890 941 COSMIC
COSN27289637 941 COSMIC
COSN27972051 941 COSMIC
COSN23721708 977 COSMIC
COSN32056937 988 COSMIC
COSN15661194 1112 COSMIC
COSN14795381 1166 COSMIC
COSN24039972 1267 COSMIC
COSN7877037 1543 COSMIC
COSN23235535 1655 COSMIC
COSN8203988 1846 COSMIC
COSN25675143 2235 COSMIC
COSN2072603 2271 COSMIC
COSN14769183 2499 COSMIC
COSN20704310 2595 COSMIC
COSN2072602 2733 COSMIC
COSN31572048 3080 COSMIC
COSN31584811 3148 COSMIC
COSN31548647 3168 COSMIC
COSN29462737 3182 COSMIC
COSN2524929 3183 COSMIC
COSN26225857 3288 COSMIC
COSN2478322 3456 COSMIC
COSN29095209 3620 COSMIC
COSN25826916 3641 COSMIC
COSN4843810 3775 COSMIC
COSN14749079 3805 COSMIC
COSN27269431 3820 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs766757493 4 dbSNP
rs760998100 8 dbSNP
rs1481177876 11 dbSNP
rs879098557 13 dbSNP
rs773742204 14 dbSNP
rs878893410 20 dbSNP
rs963733839 22 dbSNP
rs931711879 29 dbSNP
rs921826513 38 dbSNP
rs1192906446 39 dbSNP
rs772489119 42 dbSNP
rs748734869 43 dbSNP
rs376506126 49 dbSNP
rs1420146334 52 dbSNP
rs1156458666 56 dbSNP
rs1421069460 57 dbSNP
rs1380522297 58 dbSNP
rs1172531422 69 dbSNP
rs774314190 70 dbSNP
rs1406414978 74 dbSNP
rs1470770661 75 dbSNP
rs1005442225 86 dbSNP
rs887031316 100 dbSNP
rs1376466732 108 dbSNP
rs1309141476 114 dbSNP
rs1348380926 120 dbSNP
rs1020214984 122 dbSNP
rs1284123893 130 dbSNP
rs1201584172 137 dbSNP
rs1208302092 140 dbSNP
rs1255422461 144 dbSNP
rs1481040786 147 dbSNP
rs1198066047 149 dbSNP
rs988701566 155 dbSNP
rs1472451309 159 dbSNP
rs1200551378 164 dbSNP
rs1025440545 169 dbSNP
rs1452568539 174 dbSNP
rs1173522303 187 dbSNP
rs73263483 190 dbSNP
rs900912144 198 dbSNP
rs1309746601 205 dbSNP
rs189830469 211 dbSNP
rs1489428732 212 dbSNP
rs1409164531 213 dbSNP
rs1286980565 215 dbSNP
rs1003654921 216 dbSNP
rs1347170036 222 dbSNP
rs1233707607 225 dbSNP
rs3804197 232 dbSNP
rs1023841077 239 dbSNP
rs1308134059 244 dbSNP
rs1345761565 248 dbSNP
rs995424188 250 dbSNP
rs893449037 254 dbSNP
rs1482988236 255 dbSNP
rs288037 258 dbSNP
rs185124484 259 dbSNP
rs924235014 274 dbSNP
rs1189086603 275 dbSNP
rs1266291894 294 dbSNP
rs10062763 297 dbSNP
rs890148657 298 dbSNP
rs776084879 310 dbSNP
rs1428957644 321 dbSNP
rs1164211903 322 dbSNP
rs1401595121 350 dbSNP
rs1434093976 353 dbSNP
rs916654083 356 dbSNP
rs1362877682 361 dbSNP
rs1051375038 363 dbSNP
rs778488439 365 dbSNP
rs1432352262 367 dbSNP
rs921684267 373 dbSNP
rs1341547883 375 dbSNP
rs564717168 383 dbSNP
rs763704953 388 dbSNP
rs978494221 395 dbSNP
rs182331188 396 dbSNP
rs1221347022 404 dbSNP
rs545320475 416 dbSNP
rs1485961771 417 dbSNP
rs1190123393 420 dbSNP
rs1245663992 433 dbSNP
rs1192011183 438 dbSNP
rs1184107624 442 dbSNP
rs1415925336 448 dbSNP
rs1403569940 449 dbSNP
rs988754396 452 dbSNP
rs1345583557 455 dbSNP
rs959924383 456 dbSNP
rs1035059397 459 dbSNP
rs575641295 461 dbSNP
rs969384219 473 dbSNP
rs1024144506 478 dbSNP
rs1364527040 485 dbSNP
rs1453528984 486 dbSNP
rs1264204289 490 dbSNP
rs1210373083 491 dbSNP
rs1377571049 495 dbSNP
rs1228273623 497 dbSNP
rs1285319726 500 dbSNP
rs951271584 505 dbSNP
rs751317680 522 dbSNP
rs1210197531 530 dbSNP
rs1440784842 530 dbSNP
rs576250745 537 dbSNP
rs1265908232 544 dbSNP
rs1280743638 559 dbSNP
rs1464025365 560 dbSNP
rs1025598985 563 dbSNP
rs557079118 566 dbSNP
rs1238729000 567 dbSNP
rs1471738393 573 dbSNP
rs771709297 575 dbSNP
rs899353694 576 dbSNP
rs1015033901 577 dbSNP
rs147511769 580 dbSNP
rs1340845304 583 dbSNP
rs965611255 587 dbSNP
rs142437321 590 dbSNP
rs890699011 591 dbSNP
rs148795667 592 dbSNP
rs1053382120 594 dbSNP
rs1357513646 597 dbSNP
rs996247186 603 dbSNP
rs1447854986 608 dbSNP
rs999182830 612 dbSNP
rs756532527 633 dbSNP
rs542213058 638 dbSNP
rs1226987769 643 dbSNP
rs573794139 644 dbSNP
rs1327996240 647 dbSNP
rs566414414 648 dbSNP
rs1280048239 663 dbSNP
rs916708536 672 dbSNP
rs1209317517 674 dbSNP
rs1233433449 686 dbSNP
rs1483894151 688 dbSNP
rs71596590 706 dbSNP
rs1179692746 713 dbSNP
rs1410987532 719 dbSNP
rs1480852798 720 dbSNP
rs748431079 724 dbSNP
rs371063243 730 dbSNP
rs1423140274 739 dbSNP
rs1169110251 740 dbSNP
rs1467527355 741 dbSNP
rs1414028110 744 dbSNP
rs913091794 749 dbSNP
rs1187501017 750 dbSNP
rs1052940121 754 dbSNP
rs1471970746 755 dbSNP
rs938616167 758 dbSNP
rs867950848 767 dbSNP
rs942052974 770 dbSNP
rs928547098 779 dbSNP
rs191042696 780 dbSNP
rs1256103967 785 dbSNP
rs983441359 786 dbSNP
rs969812765 788 dbSNP
rs1344165098 789 dbSNP
rs1202952331 793 dbSNP
rs1318345760 808 dbSNP
rs918488944 812 dbSNP
rs186652837 814 dbSNP
rs1380957662 818 dbSNP
rs556260944 822 dbSNP
rs963412686 824 dbSNP
rs1015079669 834 dbSNP
rs1168519812 835 dbSNP
rs550723546 850 dbSNP
rs1428313240 864 dbSNP
rs536041613 867 dbSNP
rs1168590264 869 dbSNP
rs1388935195 870 dbSNP
rs977050184 877 dbSNP
rs1328953385 880 dbSNP
rs1435330443 886 dbSNP
rs1297620728 889 dbSNP
rs1343685536 891 dbSNP
rs1005014385 897 dbSNP
rs1258938234 897 dbSNP
rs965336085 904 dbSNP
rs1373944718 906 dbSNP
rs1329921394 907 dbSNP
rs954836816 928 dbSNP
rs1401656721 930 dbSNP
rs1164728224 931 dbSNP
rs568685142 933 dbSNP
rs996413013 940 dbSNP
rs28384078 941 dbSNP
rs1459922608 942 dbSNP
rs1491405683 942 dbSNP
rs1409204161 943 dbSNP
rs1491122012 943 dbSNP
rs1469704997 944 dbSNP
rs370259988 944 dbSNP
rs1246918364 945 dbSNP
rs1340940575 945 dbSNP
rs761611395 945 dbSNP
rs765694960 945 dbSNP
rs764572203 947 dbSNP
rs957776481 947 dbSNP
rs1270310112 949 dbSNP
rs754379511 949 dbSNP
rs763486764 949 dbSNP
rs1208140615 951 dbSNP
rs369353740 951 dbSNP
rs70982736 951 dbSNP
rs761279561 951 dbSNP
rs202209409 953 dbSNP
rs774808211 953 dbSNP
rs781137580 953 dbSNP
rs762687083 955 dbSNP
rs1368249105 956 dbSNP
rs1323241863 957 dbSNP
rs1290172989 958 dbSNP
rs1222789514 959 dbSNP
rs1390336467 960 dbSNP
rs1350864151 961 dbSNP
rs1310898211 963 dbSNP
rs1402306508 964 dbSNP
rs1032081577 965 dbSNP
rs900192767 966 dbSNP
rs1378353852 967 dbSNP
rs1042710582 968 dbSNP
rs1293423612 977 dbSNP
rs999131298 979 dbSNP
rs902167163 980 dbSNP
rs1011778937 981 dbSNP
rs891544898 982 dbSNP
rs1052822702 983 dbSNP
rs1199231466 983 dbSNP
rs1256127391 983 dbSNP
rs1256594395 983 dbSNP
rs1341107155 983 dbSNP
rs1377689032 983 dbSNP
rs1410233345 983 dbSNP
rs1471368099 983 dbSNP
rs1483687105 983 dbSNP
rs1484316233 983 dbSNP
rs371376623 983 dbSNP
rs749729363 983 dbSNP
rs761374260 983 dbSNP
rs773090011 983 dbSNP
rs748473424 984 dbSNP
rs1207927320 985 dbSNP
rs1250063950 985 dbSNP
rs1343428515 985 dbSNP
rs1345875246 985 dbSNP
rs1400417704 985 dbSNP
rs1482968865 985 dbSNP
rs1170483666 987 dbSNP
rs1173278538 987 dbSNP
rs1430250817 987 dbSNP
rs938501083 988 dbSNP
rs1304780081 989 dbSNP
rs1294307699 991 dbSNP
rs1369941324 994 dbSNP
rs1014222588 997 dbSNP
rs1440365872 1000 dbSNP
rs1273173909 1001 dbSNP
rs748128857 1001 dbSNP
rs769756231 1001 dbSNP
rs895401471 1001 dbSNP
rs1394433646 1006 dbSNP
rs1055698099 1009 dbSNP
rs1189348045 1020 dbSNP
rs1489223011 1021 dbSNP
rs747408826 1028 dbSNP
rs1189099666 1034 dbSNP
rs1251826695 1036 dbSNP
rs1489345859 1039 dbSNP
rs942207902 1040 dbSNP
rs1246998140 1064 dbSNP
rs909281291 1067 dbSNP
rs928430588 1098 dbSNP
rs1351409768 1099 dbSNP
rs1456581120 1105 dbSNP
rs1325553123 1109 dbSNP
rs929394452 1111 dbSNP
rs1044719393 1112 dbSNP
rs779690480 1118 dbSNP
rs916593814 1120 dbSNP
rs976112966 1125 dbSNP
rs181653409 1130 dbSNP
rs1218908609 1131 dbSNP
rs1272204367 1135 dbSNP
rs1240289376 1142 dbSNP
rs1346458523 1143 dbSNP
rs1301205845 1146 dbSNP
rs1217910766 1147 dbSNP
rs963313893 1149 dbSNP
rs1275875763 1150 dbSNP
rs911175874 1151 dbSNP
rs553872784 1153 dbSNP
rs985247605 1154 dbSNP
rs1358911946 1157 dbSNP
rs1182444952 1159 dbSNP
rs148797416 1159 dbSNP
rs288038 1166 dbSNP
rs758713695 1169 dbSNP
rs1358587841 1170 dbSNP
rs1032157255 1172 dbSNP
rs764622906 1173 dbSNP
rs954888519 1175 dbSNP
rs1397053646 1185 dbSNP
rs1434901692 1186 dbSNP
rs1425768461 1187 dbSNP
rs1030484140 1188 dbSNP
rs750816908 1189 dbSNP
rs1185765181 1191 dbSNP
rs966443213 1197 dbSNP
rs1233098262 1204 dbSNP
rs1264920842 1205 dbSNP
rs1289405266 1205 dbSNP
rs190379047 1206 dbSNP
rs1445977652 1207 dbSNP
rs1210701010 1208 dbSNP
rs1216813501 1208 dbSNP
rs1485061725 1210 dbSNP
rs186224941 1215 dbSNP
rs530964038 1219 dbSNP
rs756876905 1227 dbSNP
rs1021741422 1230 dbSNP
rs1011256303 1231 dbSNP
rs563430353 1232 dbSNP
rs1031445397 1233 dbSNP
rs1002595650 1248 dbSNP
rs1157298120 1253 dbSNP
rs1302553295 1254 dbSNP
rs1218446039 1256 dbSNP
rs907059442 1260 dbSNP
rs1415159499 1267 dbSNP
rs1338835496 1270 dbSNP
rs1280348634 1271 dbSNP
rs1400765293 1274 dbSNP
rs753763868 1280 dbSNP
rs1044219700 1284 dbSNP
rs753543832 1285 dbSNP
rs763504957 1289 dbSNP
rs1301229353 1291 dbSNP
rs1467628504 1294 dbSNP
rs1349298859 1298 dbSNP
rs1219268569 1303 dbSNP
rs898418946 1309 dbSNP
rs541938854 1315 dbSNP
rs1210077963 1329 dbSNP
rs1252263911 1338 dbSNP
rs1033961977 1340 dbSNP
rs1006374899 1342 dbSNP
rs887922110 1362 dbSNP
rs1047937117 1366 dbSNP
rs929341503 1372 dbSNP
rs1192943217 1375 dbSNP
rs901966793 1384 dbSNP
rs1169821812 1393 dbSNP
rs576638361 1395 dbSNP
rs1434640804 1401 dbSNP
rs1169846370 1406 dbSNP
rs373473336 1408 dbSNP
rs1372776999 1409 dbSNP
rs1428267570 1410 dbSNP
rs942053983 1412 dbSNP
rs764036295 1418 dbSNP
rs1334759260 1422 dbSNP
rs573476193 1424 dbSNP
rs1436772224 1425 dbSNP
rs943412264 1426 dbSNP
rs74337957 1427 dbSNP
rs911111847 1432 dbSNP
rs907851363 1444 dbSNP
rs1194111377 1447 dbSNP
rs1452343332 1454 dbSNP
rs144404597 1460 dbSNP
rs985322717 1465 dbSNP
rs933386347 1469 dbSNP
rs1392529488 1476 dbSNP
rs923472104 1477 dbSNP
rs538576474 1487 dbSNP
rs966858300 1492 dbSNP
rs965209381 1497 dbSNP
rs966124339 1498 dbSNP
rs992220377 1500 dbSNP
rs1297731892 1508 dbSNP
rs959092175 1513 dbSNP
rs1225168702 1514 dbSNP
rs540479333 1517 dbSNP
rs1006450301 1519 dbSNP
rs1483269238 1522 dbSNP
rs1211837964 1524 dbSNP
rs1468229967 1531 dbSNP
rs1209387885 1537 dbSNP
rs1249999347 1549 dbSNP
rs1445716295 1551 dbSNP
rs990379343 1557 dbSNP
rs1474004797 1563 dbSNP
rs1198502974 1566 dbSNP
rs955706339 1589 dbSNP
rs1026482622 1590 dbSNP
rs993700724 1594 dbSNP
rs1031329201 1605 dbSNP
rs149557905 1607 dbSNP
rs558077639 1619 dbSNP
rs1390208982 1622 dbSNP
rs200100255 1622 dbSNP
rs906950061 1628 dbSNP
rs1023255075 1632 dbSNP
rs1246668608 1635 dbSNP
rs1291238534 1637 dbSNP
rs1012754108 1639 dbSNP
rs898298820 1642 dbSNP
rs558759491 1645 dbSNP
rs182035659 1647 dbSNP
rs1205033307 1652 dbSNP
rs1257529465 1659 dbSNP
rs943469660 1661 dbSNP
rs1186193187 1662 dbSNP
rs1257274767 1668 dbSNP
rs1379923241 1676 dbSNP
rs1474637352 1692 dbSNP
rs889095590 1693 dbSNP
rs1365007127 1703 dbSNP
rs1054396266 1705 dbSNP
rs1157517335 1706 dbSNP
rs936555256 1707 dbSNP
rs1444560421 1718 dbSNP
rs1310781217 1722 dbSNP
rs1354660658 1724 dbSNP
rs1402355507 1729 dbSNP
rs1171191475 1730 dbSNP
rs1410647703 1733 dbSNP
rs925240264 1735 dbSNP
rs977884436 1736 dbSNP
rs1457192953 1737 dbSNP
rs1238365648 1745 dbSNP
rs1366390437 1745 dbSNP
rs1409280168 1749 dbSNP
rs945257003 1749 dbSNP
rs939927474 1759 dbSNP
rs1280059106 1762 dbSNP
rs1423900094 1768 dbSNP
rs886463424 1772 dbSNP
rs1182412800 1773 dbSNP
rs1236959282 1776 dbSNP
rs1252182011 1780 dbSNP
rs557058849 1782 dbSNP
rs1176228859 1787 dbSNP
rs1047715843 1792 dbSNP
rs535564485 1794 dbSNP
rs1377706138 1797 dbSNP
rs1436503736 1799 dbSNP
rs1171756526 1805 dbSNP
rs1374598634 1806 dbSNP
rs1240547073 1809 dbSNP
rs933440223 1813 dbSNP
rs1309651561 1816 dbSNP
rs568630126 1818 dbSNP
rs984457838 1823 dbSNP
rs952266326 1828 dbSNP
rs1263923464 1833 dbSNP
rs1332974885 1842 dbSNP
rs1247179819 1847 dbSNP
rs1026595538 1848 dbSNP
rs994055644 1848 dbSNP
rs1343539684 1849 dbSNP
rs1207682829 1850 dbSNP
rs1249991232 1857 dbSNP
rs1322550470 1864 dbSNP
rs966215399 1873 dbSNP
rs923387301 1876 dbSNP
rs1019545539 1878 dbSNP
rs1394357138 1880 dbSNP
rs1238029790 1881 dbSNP
rs1450025622 1887 dbSNP
rs1007609344 1890 dbSNP
rs1352547297 1891 dbSNP
rs975195134 1895 dbSNP
rs547207751 1901 dbSNP
rs1461665939 1902 dbSNP
rs1294399213 1904 dbSNP
rs1396749185 1913 dbSNP
rs1438754747 1916 dbSNP
rs1379080202 1926 dbSNP
rs1331909344 1933 dbSNP
rs1231265402 1935 dbSNP
rs1293879337 1941 dbSNP
rs535270242 1945 dbSNP
rs571035735 1955 dbSNP
rs1226216750 1962 dbSNP
rs1265699671 1976 dbSNP
rs1054384941 1981 dbSNP
rs1000185378 1991 dbSNP
rs1251846829 2008 dbSNP
rs1371444612 2012 dbSNP
rs1294925681 2016 dbSNP
rs903764943 2021 dbSNP
rs1042307557 2027 dbSNP
rs914699306 2030 dbSNP
rs552871186 2032 dbSNP
rs1156354986 2041 dbSNP
rs945303261 2059 dbSNP
rs1165256990 2060 dbSNP
rs917728638 2065 dbSNP
rs1460083182 2067 dbSNP
rs138156053 2068 dbSNP
rs1433483706 2070 dbSNP
rs1287677553 2072 dbSNP
rs926398690 2098 dbSNP
rs990430030 2102 dbSNP
rs956257328 2105 dbSNP
rs1315299856 2109 dbSNP
rs563366498 2115 dbSNP
rs1336422133 2116 dbSNP
rs1231082151 2118 dbSNP
rs1271985443 2122 dbSNP
rs569401758 2123 dbSNP
rs1183102838 2135 dbSNP
rs1217835873 2137 dbSNP
rs981097257 2145 dbSNP
rs971430324 2155 dbSNP
rs1259359008 2156 dbSNP
rs1474345376 2157 dbSNP
rs1164550235 2170 dbSNP
rs530141563 2170 dbSNP
rs1402562465 2176 dbSNP
rs1022730513 2184 dbSNP
rs779902437 2187 dbSNP
rs1490589477 2193 dbSNP
rs1449417401 2199 dbSNP
rs1019075999 2208 dbSNP
rs1013052230 2210 dbSNP
rs1214587892 2211 dbSNP
rs1008183254 2214 dbSNP
rs1224919025 2224 dbSNP
rs559459469 2224 dbSNP
rs1016702242 2227 dbSNP
rs1281542427 2232 dbSNP
rs540048316 2252 dbSNP
rs1033083411 2254 dbSNP
rs1309906805 2255 dbSNP
rs1484594740 2259 dbSNP
rs1232355420 2267 dbSNP
rs1252755222 2274 dbSNP
rs1000132696 2278 dbSNP
rs1175501178 2281 dbSNP
rs374954530 2284 dbSNP
rs1415545021 2292 dbSNP
rs1329265891 2297 dbSNP
rs1374005007 2300 dbSNP
rs1434531527 2304 dbSNP
rs1309043064 2324 dbSNP
rs1354694583 2331 dbSNP
rs903166554 2335 dbSNP
rs1277259197 2336 dbSNP
rs1372051469 2340 dbSNP
rs1234900428 2344 dbSNP
rs1004123514 2356 dbSNP
rs1387112158 2366 dbSNP
rs1359544544 2373 dbSNP
rs1009451748 2396 dbSNP
rs189344043 2398 dbSNP
rs774266704 2399 dbSNP
rs1232362109 2402 dbSNP
rs1295917243 2409 dbSNP
rs1196018017 2421 dbSNP
rs1393765331 2438 dbSNP
rs1454232603 2442 dbSNP
rs546093807 2450 dbSNP
rs575283663 2451 dbSNP
rs1171481643 2455 dbSNP
rs1411281494 2456 dbSNP
rs748378125 2459 dbSNP
rs776918196 2465 dbSNP
rs1478021354 2471 dbSNP
rs1376407317 2475 dbSNP
rs1353379582 2476 dbSNP
rs1201518685 2479 dbSNP
rs549366400 2487 dbSNP
rs1262772968 2497 dbSNP
rs1233485633 2498 dbSNP
rs288039 2499 dbSNP
rs930394058 2500 dbSNP
rs535485082 2520 dbSNP
rs934935805 2523 dbSNP
rs377003957 2528 dbSNP
rs1285123759 2531 dbSNP
rs1199923676 2540 dbSNP
rs1469098534 2541 dbSNP
rs183493975 2542 dbSNP
rs534890709 2553 dbSNP
rs1251222720 2554 dbSNP
rs1468424052 2558 dbSNP
rs971099361 2559 dbSNP
rs1375115239 2561 dbSNP
rs915548686 2566 dbSNP
rs1167725203 2568 dbSNP
rs1418284653 2568 dbSNP
rs566646465 2569 dbSNP
rs1339542128 2570 dbSNP
rs1275927785 2571 dbSNP
rs1391735813 2575 dbSNP
rs747132240 2587 dbSNP
rs962771403 2588 dbSNP
rs1016755995 2595 dbSNP
rs1033158381 2606 dbSNP
rs1340731360 2608 dbSNP
rs558961227 2610 dbSNP
rs1269401433 2625 dbSNP
rs967442559 2633 dbSNP
rs1235442264 2634 dbSNP
rs1004007723 2635 dbSNP
rs537754065 2639 dbSNP
rs1206202578 2640 dbSNP
rs951176755 2648 dbSNP
rs1332986036 2652 dbSNP
rs776252112 2656 dbSNP
rs1412236209 2671 dbSNP
rs1264421839 2679 dbSNP
rs1445792493 2683 dbSNP
rs1192845884 2684 dbSNP
rs1258664472 2686 dbSNP
rs1475330354 2708 dbSNP
rs1400733735 2718 dbSNP
rs1414995823 2719 dbSNP
rs1029554435 2742 dbSNP
rs569676826 2744 dbSNP
rs546717507 2755 dbSNP
rs1386988086 2764 dbSNP
rs1398885515 2765 dbSNP
rs1317369122 2767 dbSNP
rs1470517142 2775 dbSNP
rs1355911534 2785 dbSNP
rs1416830658 2794 dbSNP
rs372420287 2798 dbSNP
rs1035373246 2803 dbSNP
rs1239794387 2805 dbSNP
rs1349084015 2810 dbSNP
rs901875225 2813 dbSNP
rs775184039 2817 dbSNP
rs1281481206 2818 dbSNP
rs530081027 2822 dbSNP
rs80333248 2823 dbSNP
rs1254912934 2824 dbSNP
rs1422902413 2860 dbSNP
rs1181830083 2861 dbSNP
rs1365102951 2862 dbSNP
rs893219127 2866 dbSNP
rs759651608 2872 dbSNP
rs1242890372 2874 dbSNP
rs151233014 2880 dbSNP
rs1468523179 2881 dbSNP
rs1048935299 2886 dbSNP
rs1375802465 2888 dbSNP
rs1054512276 2889 dbSNP
rs146323922 2890 dbSNP
rs1375009656 2894 dbSNP
rs528239826 2897 dbSNP
rs944396945 2907 dbSNP
rs912126715 2909 dbSNP
rs1304864259 2910 dbSNP
rs1350722734 2911 dbSNP
rs1317073478 2917 dbSNP
rs1046009102 2922 dbSNP
rs564782050 2923 dbSNP
rs1255982983 2924 dbSNP
rs1220214677 2930 dbSNP
rs986762918 2933 dbSNP
rs551286134 2935 dbSNP
rs1482721292 2936 dbSNP
rs1339709515 2937 dbSNP
rs915616829 2944 dbSNP
rs991552392 2949 dbSNP
rs940995591 2952 dbSNP
rs1283199045 2953 dbSNP
rs1435610274 2960 dbSNP
rs371751591 2960 dbSNP
rs1177497473 2961 dbSNP
rs909637207 2965 dbSNP
rs191353353 2974 dbSNP
rs932247312 2988 dbSNP
rs545731102 2990 dbSNP
rs1455540176 2992 dbSNP
rs1445208592 3000 dbSNP
rs1341681606 3002 dbSNP
rs1171446144 3003 dbSNP
rs1376928045 3004 dbSNP
rs926088842 3024 dbSNP
rs1300168726 3025 dbSNP
rs1394387650 3029 dbSNP
rs369906942 3034 dbSNP
rs1373756593 3039 dbSNP
rs1232747596 3043 dbSNP
rs978901149 3051 dbSNP
rs967432702 3056 dbSNP
rs1227660295 3058 dbSNP
rs1252659540 3061 dbSNP
rs189471253 3062 dbSNP
rs992825384 3070 dbSNP
rs1253082519 3071 dbSNP
rs1169044465 3086 dbSNP
rs1469759498 3086 dbSNP
rs1029440081 3103 dbSNP
rs1266389421 3111 dbSNP
rs1467480059 3115 dbSNP
rs1172313746 3116 dbSNP
rs1465314998 3124 dbSNP
rs1165663285 3134 dbSNP
rs1396853830 3144 dbSNP
rs1439314216 3158 dbSNP
rs960289938 3160 dbSNP
rs1363305776 3162 dbSNP
rs1034368845 3166 dbSNP
rs976723013 3167 dbSNP
rs1293893792 3171 dbSNP
rs1305331281 3184 dbSNP
rs1217707227 3185 dbSNP
rs1420529950 3193 dbSNP
rs964302757 3196 dbSNP
rs1273260254 3208 dbSNP
rs563621935 3211 dbSNP
rs1002088357 3216 dbSNP
rs1264758343 3216 dbSNP
rs758871244 3224 dbSNP
rs746418982 3225 dbSNP
rs185011756 3242 dbSNP
rs1007981097 3244 dbSNP
rs1471857940 3251 dbSNP
rs893104563 3259 dbSNP
rs1188979387 3260 dbSNP
rs1033106763 3264 dbSNP
rs998926236 3265 dbSNP
rs142043273 3266 dbSNP
rs1046316969 3272 dbSNP
rs950361561 3274 dbSNP
rs1236255480 3276 dbSNP
rs944488180 3284 dbSNP
rs1346244009 3300 dbSNP
rs894725477 3301 dbSNP
rs779231655 3309 dbSNP
rs552761879 3319 dbSNP
rs1340357864 3326 dbSNP
rs1288721424 3330 dbSNP
rs1398989612 3333 dbSNP
rs932196398 3335 dbSNP
rs926246608 3349 dbSNP
rs909524560 3357 dbSNP
rs982526700 3379 dbSNP
rs541145867 3387 dbSNP
rs922500059 3399 dbSNP
rs1288544773 3410 dbSNP
rs1317376846 3413 dbSNP
rs1043198553 3418 dbSNP
rs1258715334 3420 dbSNP
rs976983691 3426 dbSNP
rs1487861830 3427 dbSNP
rs1211370406 3430 dbSNP
rs1358027759 3431 dbSNP
rs1259815108 3441 dbSNP
rs946247522 3442 dbSNP
rs1408889102 3447 dbSNP
rs1421381878 3453 dbSNP
rs1157623647 3454 dbSNP
rs913418277 3457 dbSNP
rs963879517 3460 dbSNP
rs74748316 3461 dbSNP
rs879407370 3466 dbSNP
rs1018612107 3470 dbSNP
rs1444840426 3472 dbSNP
rs1445364495 3481 dbSNP
rs1283086237 3485 dbSNP
rs1373502975 3503 dbSNP
rs1225362357 3508 dbSNP
rs1355420409 3519 dbSNP
rs989382930 3520 dbSNP
rs1403879338 3524 dbSNP
rs1416201215 3525 dbSNP
rs1484809034 3528 dbSNP
rs1164341271 3530 dbSNP
rs1439121800 3539 dbSNP
rs1209749488 3540 dbSNP
rs1233500375 3541 dbSNP
rs774670275 3548 dbSNP
rs771127674 3549 dbSNP
rs192879998 3551 dbSNP
rs1455098817 3556 dbSNP
rs1175846706 3566 dbSNP
rs998978646 3573 dbSNP
rs1412389511 3574 dbSNP
rs1245982192 3578 dbSNP
rs969288662 3590 dbSNP
rs1027604478 3592 dbSNP
rs1443680458 3593 dbSNP
rs1328703153 3604 dbSNP
rs1375968516 3605 dbSNP
rs1235008690 3608 dbSNP
rs1219097690 3616 dbSNP
rs1453017382 3617 dbSNP
rs80031560 3619 dbSNP
rs1215292616 3620 dbSNP
rs1218839641 3621 dbSNP
rs1273930872 3621 dbSNP
rs62723662 3621 dbSNP
rs1196765145 3624 dbSNP
rs1237647619 3633 dbSNP
rs559118597 3634 dbSNP
rs1491296473 3635 dbSNP
rs1251500527 3636 dbSNP
rs1411302018 3636 dbSNP
rs144486084 3636 dbSNP
rs1491578755 3636 dbSNP
rs34328033 3636 dbSNP
rs869037027 3636 dbSNP
rs1024357000 3638 dbSNP
rs1167907753 3638 dbSNP
rs1225908287 3638 dbSNP
rs1374686315 3640 dbSNP
rs1274691358 3643 dbSNP
rs1434725048 3644 dbSNP
rs1014838143 3646 dbSNP
rs1329306388 3646 dbSNP
rs1367720353 3646 dbSNP
rs1217105818 3653 dbSNP
rs1364272358 3653 dbSNP
rs1257491206 3660 dbSNP
rs1335606401 3661 dbSNP
rs1303936497 3663 dbSNP
rs1014771285 3668 dbSNP
rs1009027986 3669 dbSNP
rs1288289673 3672 dbSNP
rs1451549406 3682 dbSNP
rs1194260513 3684 dbSNP
rs890214114 3685 dbSNP
rs894618373 3703 dbSNP
rs1476180025 3705 dbSNP
rs753362265 3712 dbSNP
rs1422244852 3714 dbSNP
rs763180860 3722 dbSNP
rs537286245 3738 dbSNP
rs888138620 3740 dbSNP
rs138637677 3747 dbSNP
rs1404704506 3749 dbSNP
rs1318723801 3754 dbSNP
rs929762773 3756 dbSNP
rs1419666176 3757 dbSNP
rs1398362124 3762 dbSNP
rs188837597 3762 dbSNP
rs1189287782 3763 dbSNP
rs1235150023 3770 dbSNP
rs1040760424 3773 dbSNP
rs942547539 3781 dbSNP
rs1282505174 3782 dbSNP
rs1478862494 3785 dbSNP
rs1482431617 3786 dbSNP
rs770426652 3791 dbSNP
rs1356254856 3793 dbSNP
rs1206295845 3802 dbSNP
rs288040 3805 dbSNP
rs989419794 3807 dbSNP
rs946333267 3811 dbSNP
rs1216379435 3812 dbSNP
rs1192405535 3815 dbSNP
rs1487024061 3817 dbSNP
rs1475340049 3818 dbSNP
rs1287622905 3819 dbSNP
rs1215865872 3820 dbSNP
rs913357273 3820 dbSNP
rs1472418900 3824 dbSNP
rs1057304596 3826 dbSNP
rs1159125562 3826 dbSNP
rs1318091784 3835 dbSNP
rs957937505 3836 dbSNP
rs1454389850 3837 dbSNP
rs1491077299 3837 dbSNP
rs35414819 3837 dbSNP
rs386405095 3837 dbSNP
rs386405096 3837 dbSNP
rs553693145 3837 dbSNP
rs778207894 3837 dbSNP
rs927397324 3837 dbSNP
rs1281505062 3839 dbSNP
rs1217857128 3841 dbSNP
rs1347712595 3847 dbSNP
rs1485794437 3850 dbSNP
rs1201880836 3851 dbSNP
rs980088041 3854 dbSNP
rs925976945 3858 dbSNP
rs1399705422 3866 dbSNP
rs919940437 3867 dbSNP
rs373389501 3873 dbSNP
rs1382030702 3874 dbSNP
rs1290764665 3879 dbSNP
rs1454343452 3892 dbSNP
rs1358533775 3895 dbSNP
rs1157822089 3896 dbSNP
rs1173803056 3908 dbSNP
rs752224400 3911 dbSNP
rs1436788789 3915 dbSNP
rs1301353783 3918 dbSNP
rs767188543 3937 dbSNP
rs1401802202 3939 dbSNP
rs1429647920 3950 dbSNP
rs1024826574 3951 dbSNP
rs1330996116 3952 dbSNP
rs77001197 3956 dbSNP
rs1375248098 3957 dbSNP
rs961993749 3960 dbSNP
rs1264853109 3962 dbSNP
rs1015130955 3964 dbSNP
rs1343884364 3971 dbSNP
rs1195802398 3973 dbSNP
rs1008768874 3978 dbSNP
rs1014310958 3986 dbSNP
rs759534090 3991 dbSNP
rs1177988853 3999 dbSNP
rs1253357664 4005 dbSNP
rs1434644137 4011 dbSNP
rs1186627639 4015 dbSNP
rs1028727618 4016 dbSNP
rs1237427193 4017 dbSNP
rs751614590 4018 dbSNP
rs1326277258 4019 dbSNP
rs1264210723 4022 dbSNP
rs904168267 4022 dbSNP
rs1327212300 4023 dbSNP
rs766211571 4024 dbSNP
rs1218391049 4026 dbSNP
rs1301021024 4033 dbSNP
rs1385406194 4033 dbSNP
rs369911738 4056 dbSNP
rs959159370 4061 dbSNP
rs1316333702 4074 dbSNP
rs1034508087 4078 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb HITS-CLIP data was present in GSM1084078. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_AbnovaAb HITS-CLIP data was present in GSM1084079. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000274711.6 | 3UTR | AAAAAAAGAGAGAGAGAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000274711.6 | 3UTR | CCAGGAAAAAAAAAAAAAAAGAGAGAGAGACAGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084078
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep2_AbnovaAb
Location of target site ENST00000274711.6 | 3UTR | CCAGGAAAAAAAAAAAAAAAGAGAGAGAGACAGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1084079
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_AbnovaAb
Location of target site ENST00000274711.6 | 3UTR | CCAGGAAAAAAAAAAAAAAAGAGAGAGAGAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
150 hsa-miR-6818-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT112122 TIMM17A translocase of inner mitochondrial membrane 17A 2 6
MIRT262243 BAMBI BMP and activin membrane bound inhibitor 2 2
MIRT446689 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT449923 TPST2 tyrosylprotein sulfotransferase 2 2 2
MIRT464356 USP12P1 ubiquitin specific peptidase 12 pseudogene 1 2 2
MIRT485703 CBX7 chromobox 7 2 2
MIRT497478 XPR1 xenotropic and polytropic retrovirus receptor 1 2 4
MIRT499435 ODF2L outer dense fiber of sperm tails 2 like 2 8
MIRT514246 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT515032 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT515065 PLA2G2C phospholipase A2 group IIC 2 2
MIRT520235 USP9X ubiquitin specific peptidase 9, X-linked 2 4
MIRT523685 FHL2 four and a half LIM domains 2 2 4
MIRT525524 FSIP2 fibrous sheath interacting protein 2 2 2
MIRT525838 FAR2 fatty acyl-CoA reductase 2 2 2
MIRT528583 PTGER3 prostaglandin E receptor 3 2 2
MIRT530404 SULT1B1 sulfotransferase family 1B member 1 2 2
MIRT530703 RNMTL1 mitochondrial rRNA methyltransferase 3 2 2
MIRT535118 PLSCR4 phospholipid scramblase 4 2 2
MIRT539880 IRGQ immunity related GTPase Q 2 2
MIRT540195 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT540938 SLC25A43 solute carrier family 25 member 43 2 2
MIRT541501 TOR1AIP1 torsin 1A interacting protein 1 2 2
MIRT542544 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT542559 ZNF280B zinc finger protein 280B 2 2
MIRT542689 RPS15A ribosomal protein S15a 2 2
MIRT548759 CNNM3 cyclin and CBS domain divalent metal cation transport mediator 3 2 2
MIRT549735 MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5 2 2
MIRT553060 ULK1 unc-51 like autophagy activating kinase 1 2 2
MIRT556303 MAP2K4 mitogen-activated protein kinase kinase 4 2 2
MIRT560816 DIP2A disco interacting protein 2 homolog A 2 2
MIRT567455 GLTSCR1 BRD4 interacting chromatin remodeling complex associated protein 2 2
MIRT575143 Cd93 CD93 antigen 2 2
MIRT607217 ACSM2A acyl-CoA synthetase medium chain family member 2A 2 4
MIRT607286 CD300E CD300e molecule 2 6
MIRT607302 RREB1 ras responsive element binding protein 1 2 6
MIRT608645 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT611095 MYO1F myosin IF 2 4
MIRT611576 CLEC4D C-type lectin domain family 4 member D 2 2
MIRT614271 WSCD2 WSC domain containing 2 2 2
MIRT614855 PLEKHA6 pleckstrin homology domain containing A6 2 2
MIRT617114 KANK2 KN motif and ankyrin repeat domains 2 2 2
MIRT618002 SLC9A3R2 SLC9A3 regulator 2 2 2
MIRT618028 CTU1 cytosolic thiouridylase subunit 1 2 2
MIRT619062 BSND barttin CLCNK type accessory beta subunit 2 4
MIRT619289 FAM26E calcium homeostasis modulator family member 5 2 2
MIRT619356 CFHR5 complement factor H related 5 2 2
MIRT620725 CCL16 C-C motif chemokine ligand 16 2 2
MIRT620913 LRRTM2 leucine rich repeat transmembrane neuronal 2 2 2
MIRT621902 TAB1 TGF-beta activated kinase 1 (MAP3K7) binding protein 1 2 2
MIRT622025 STAT5A signal transducer and activator of transcription 5A 2 2
MIRT622556 PTPN3 protein tyrosine phosphatase, non-receptor type 3 2 2
MIRT623137 NCKAP1 NCK associated protein 1 2 2
MIRT623140 NAV2 neuron navigator 2 2 2
MIRT623701 HHAT hedgehog acyltransferase 2 2
MIRT624602 B3GALT5 beta-1,3-galactosyltransferase 5 2 2
MIRT625944 OLIG3 oligodendrocyte transcription factor 3 2 2
MIRT625988 SPATA17 spermatogenesis associated 17 2 2
MIRT628028 LSAMP limbic system-associated membrane protein 2 2
MIRT635521 MC2R melanocortin 2 receptor 2 2
MIRT638916 CALCOCO2 calcium binding and coiled-coil domain 2 2 2
MIRT639796 EPX eosinophil peroxidase 2 2
MIRT640344 C1orf210 chromosome 1 open reading frame 210 2 2
MIRT644806 VLDLR very low density lipoprotein receptor 2 2
MIRT645303 AGTRAP angiotensin II receptor associated protein 2 2
MIRT645629 SYTL4 synaptotagmin like 4 2 2
MIRT645683 TBC1D13 TBC1 domain family member 13 2 2
MIRT646216 DUSP10 dual specificity phosphatase 10 2 2
MIRT648505 PIGG phosphatidylinositol glycan anchor biosynthesis class G 2 2
MIRT649748 UTP20 UTP20, small subunit processome component 2 2
MIRT649797 CLEC2D C-type lectin domain family 2 member D 2 2
MIRT650482 UFM1 ubiquitin fold modifier 1 2 2
MIRT653199 SP9 Sp9 transcription factor 2 2
MIRT655741 NR2F2 nuclear receptor subfamily 2 group F member 2 2 2
MIRT659978 C2CD2L C2CD2 like 2 2
MIRT660350 BAG4 BCL2 associated athanogene 4 2 2
MIRT662185 MEI1 meiotic double-stranded break formation protein 1 2 2
MIRT663290 TECPR2 tectonin beta-propeller repeat containing 2 2 2
MIRT666817 PRCP prolylcarboxypeptidase 2 2
MIRT671665 HEYL hes related family bHLH transcription factor with YRPW motif-like 2 2
MIRT671838 PDE3A phosphodiesterase 3A 2 2
MIRT672193 F2 coagulation factor II, thrombin 2 2
MIRT673870 KLF2 Kruppel like factor 2 2 2
MIRT683563 CARD8 caspase recruitment domain family member 8 2 2
MIRT684545 ZNF708 zinc finger protein 708 2 2
MIRT685140 TACR3 tachykinin receptor 3 2 2
MIRT685413 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT686039 SLC5A5 solute carrier family 5 member 5 2 2
MIRT686126 B4GALT7 beta-1,4-galactosyltransferase 7 2 2
MIRT687473 NHLRC2 NHL repeat containing 2 2 2
MIRT687946 HHIP hedgehog interacting protein 2 2
MIRT688171 FRRS1 ferric chelate reductase 1 2 2
MIRT688295 FAM208A family with sequence similarity 208 member A 2 2
MIRT689044 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT689194 ZNF574 zinc finger protein 574 2 2
MIRT691253 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT695358 PHAX phosphorylated adaptor for RNA export 2 2
MIRT696674 APOC3 apolipoprotein C3 2 2
MIRT697358 ZNF394 zinc finger protein 394 2 2
MIRT697604 XIAP X-linked inhibitor of apoptosis 2 2
MIRT697726 USP6NL USP6 N-terminal like 2 2
MIRT697776 UBXN7 UBX domain protein 7 2 2
MIRT698478 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT698984 SPAG9 sperm associated antigen 9 2 2
MIRT699851 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT700172 RIMKLB ribosomal modification protein rimK like family member B 2 2
MIRT704339 DCAF16 DDB1 and CUL4 associated factor 16 2 2
MIRT704589 CLN8 CLN8, transmembrane ER and ERGIC protein 2 2
MIRT705836 AHCY adenosylhomocysteinase 2 2
MIRT707085 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT707132 TRA2B transformer 2 beta homolog 2 2
MIRT707145 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT707234 H6PD hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase 2 2
MIRT707347 XPNPEP3 X-prolyl aminopeptidase 3 2 2
MIRT707445 PPFIBP1 PPFIA binding protein 1 2 2
MIRT707494 AXL AXL receptor tyrosine kinase 2 2
MIRT707638 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT707690 FAM118A family with sequence similarity 118 member A 2 2
MIRT707706 CDC6 cell division cycle 6 2 2
MIRT707817 TMEM170A transmembrane protein 170A 2 2
MIRT707957 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT707996 NUDT4 nudix hydrolase 4 2 2
MIRT708026 MRPS14 mitochondrial ribosomal protein S14 2 2
MIRT708058 LIX1L limb and CNS expressed 1 like 2 2
MIRT708089 KIAA1671 KIAA1671 2 2
MIRT708125 GK5 glycerol kinase 5 (putative) 2 2
MIRT708194 ANP32E acidic nuclear phosphoprotein 32 family member E 2 2
MIRT708201 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT710503 BSDC1 BSD domain containing 1 2 2
MIRT711308 IFNGR2 interferon gamma receptor 2 2 2
MIRT711740 DTX1 deltex E3 ubiquitin ligase 1 2 2
MIRT713202 SOCS6 suppressor of cytokine signaling 6 2 2
MIRT714380 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT715210 NPVF neuropeptide VF precursor 2 2
MIRT715559 EPHB4 EPH receptor B4 2 2
MIRT715835 SZT2 SZT2, KICSTOR complex subunit 2 2
MIRT716680 HLA-B major histocompatibility complex, class I, B 2 2
MIRT717660 THBS2 thrombospondin 2 2 2
MIRT718132 PALM paralemmin 2 2
MIRT718322 METTL7A methyltransferase like 7A 2 2
MIRT720693 RNF217 ring finger protein 217 2 2
MIRT720727 ELOVL7 ELOVL fatty acid elongase 7 2 2
MIRT721376 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT721983 FAM214B family with sequence similarity 214 member B 2 2
MIRT722163 MRPS15 mitochondrial ribosomal protein S15 2 2
MIRT722881 MOB3A MOB kinase activator 3A 2 2
MIRT723218 FMNL3 formin like 3 2 2
MIRT723788 MUC17 mucin 17, cell surface associated 2 2
MIRT724093 TMEM199 transmembrane protein 199 2 2
MIRT725265 OSTM1 osteopetrosis associated transmembrane protein 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-6818-3p Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-miR-6818-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-6818-3p Cisplatin 5460033 NSC119875 approved resistant cell line (MGC-803)

Error report submission