pre-miRNA Information
pre-miRNA hsa-mir-3160-1   
Genomic Coordinates chr11: 46451805 - 46451889
Description Homo sapiens miR-3160-1 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-3160-2   
Genomic Coordinates chr11: 46451807 - 46451887
Description Homo sapiens miR-3160-2 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3160-3p
Sequence 54| AGAGCUGAGACUAGAAAGCCCA |75
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30582333 1 COSMIC
COSN1535547 3 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1396368683 1 dbSNP
rs1162409303 2 dbSNP
rs1404378453 12 dbSNP
rs1171960732 14 dbSNP
rs1324633375 16 dbSNP
rs1187765019 16 dbSNP
rs1300058326 19 dbSNP
rs1432898407 21 dbSNP
rs1011279103 22 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CLSTN3   
Synonyms CDHR14, CSTN3, alcbeta
Description calsyntenin 3
Transcript NM_014718   
Expression
Putative miRNA Targets on CLSTN3
3'UTR of CLSTN3
(miRNA target sites are highlighted)
>CLSTN3|NM_014718|3'UTR
   1 GGCCTACACCTCTCCCCACGCAGAGGGGGAATTCTGCCCTGGTGAAACAGACACTCCAGACATGGGAGAAGGACTTTCTG
  81 GGAACACAGAGACCAAGAGGGAGAGAGGCTTCAGAACCAGTCCTCCTTTCATTTCAAAACCCCAGCGGGCCCTCTGGAGT
 161 CCGCCCTGCCCCTCCCCCGGCCCCCCATCCCTCACTTCTGGGCTGTCATGCTCCTGGTGTGCCCCTTGCACTGGGGCTGG
 241 CTGGGTTGGAAAGTGGGCTGGACTTCAGCTGCCTTTCTACCCCCAATGGCAGCTGCCCCCTTAGCACTCACTGTGTTGGG
 321 GAGAGGGTGACGATTGCAATGGCTGGGGCTGGGGCTGGGGGTGGGATTGAAGGAAACCCTCTCCTCTCCCCTTCCCTTCT
 401 CTCTCCTGTCCATGGGAAGCTTTTCCCCCTCTGCAGGGCTCCCTCAGCTGGACCATCGTCCCTGCTTCTCTTATGATCGC
 481 CCCACCTCATTTCCATTTCAGTCTGGGGACCCCATTTCTCCCTCCTTTCCAACTTCCTTCCTTTCTTGTCCTGTTTCCCT
 561 TCCTGCCCTTGCAGTCCTGAGGTCCTGCAGCCCCGGCCCCTCCTCCGTGACCTGGTGTGGCCAGGCTGCGGGGACGGGAG
 641 GGGACGTGGGGGCCCCGGGTGTACATATATAATGTATATTTTTTCAATGTTGTCGTGAGTGCAGCCCATGTTCCTGCGTG
 721 CAGCTCACGGCCTTGTGTGTATGTGTGTGTGTGTGTGTGTGTGAGGCATCGTCATGTCCTGGGGCAGGGGCGGGGGGTTG
 801 GGTGTGGTGAGGGAGGGGACATATCCTAGGGTTTTCAAATAAAACAATCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acccgaaaGAUCAG-AGUCGAga 5'
                  ||:| | ||||||  
Target 5' aaagtgggCTGGACTTCAGCTgc 3'
250 - 272 130.00 -16.20
2
miRNA  3' acccgaAAGAUC--AGAGU-CGAGa 5'
                ||||:|  | ||| |||| 
Target 5' cctcacTTCTGGGCTGTCATGCTCc 3'
190 - 214 126.00 -13.30
3
miRNA  3' acccgaaagaucaGAGUCGAga 5'
                       |||||||  
Target 5' tctgcagggctccCTCAGCTgg 3'
430 - 451 125.00 -14.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN28873912 21 COSMIC
COSN1151782 38 COSMIC
COSN28198278 44 COSMIC
COSN31516607 69 COSMIC
COSN31482258 113 COSMIC
COSN19727019 148 COSMIC
COSN1151783 362 COSMIC
COSN25164459 476 COSMIC
COSN1151785 531 COSMIC
COSN25754466 804 COSMIC
COSN6537231 837 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1183467310 4 dbSNP
rs780563104 4 dbSNP
rs752170176 6 dbSNP
rs1356904354 10 dbSNP
rs772195799 11 dbSNP
rs1302763081 15 dbSNP
rs1172787379 17 dbSNP
rs751169860 20 dbSNP
rs1023862335 21 dbSNP
rs1417167692 22 dbSNP
rs1286782968 24 dbSNP
rs760882672 27 dbSNP
rs962965550 28 dbSNP
rs1224503000 30 dbSNP
rs901665206 31 dbSNP
rs200459589 32 dbSNP
rs1209574114 35 dbSNP
rs1280947222 38 dbSNP
rs1486571839 39 dbSNP
rs1179956484 40 dbSNP
rs1250751208 49 dbSNP
rs372811449 50 dbSNP
rs1178554725 53 dbSNP
rs1278158701 54 dbSNP
rs1377979143 66 dbSNP
rs1330737336 75 dbSNP
rs1310708160 78 dbSNP
rs986933673 84 dbSNP
rs957553805 89 dbSNP
rs61917953 92 dbSNP
rs80341359 98 dbSNP
rs761614283 99 dbSNP
rs776787505 103 dbSNP
rs1412062763 108 dbSNP
rs1160893026 117 dbSNP
rs1019971720 124 dbSNP
rs1379348594 125 dbSNP
rs750677929 126 dbSNP
rs1176417714 128 dbSNP
rs981208597 129 dbSNP
rs757082280 132 dbSNP
rs928394726 137 dbSNP
rs958890260 147 dbSNP
rs1236321179 151 dbSNP
rs1286052016 155 dbSNP
rs765483922 163 dbSNP
rs920188138 177 dbSNP
rs775619361 179 dbSNP
rs1047030119 180 dbSNP
rs1275578255 182 dbSNP
rs935058858 183 dbSNP
rs1436379030 185 dbSNP
rs1348684421 202 dbSNP
rs908567785 204 dbSNP
rs1420635620 206 dbSNP
rs944064772 209 dbSNP
rs1360324776 219 dbSNP
rs1172969084 220 dbSNP
rs1156384186 225 dbSNP
rs896239286 226 dbSNP
rs1041095512 232 dbSNP
rs753924152 246 dbSNP
rs1465435403 251 dbSNP
rs996019131 254 dbSNP
rs1194342738 262 dbSNP
rs1373891097 274 dbSNP
rs1283644312 277 dbSNP
rs1437244771 277 dbSNP
rs1314235449 278 dbSNP
rs1279382603 284 dbSNP
rs1050686540 287 dbSNP
rs1365604415 288 dbSNP
rs1280603982 291 dbSNP
rs969168280 294 dbSNP
rs893018259 297 dbSNP
rs1011922986 302 dbSNP
rs1365742173 303 dbSNP
rs1019940631 311 dbSNP
rs1426817481 316 dbSNP
rs1258957858 327 dbSNP
rs1296796499 329 dbSNP
rs967018140 332 dbSNP
rs1318290112 333 dbSNP
rs1174943332 337 dbSNP
rs141967428 341 dbSNP
rs3837528 341 dbSNP
rs763226635 341 dbSNP
rs767245153 341 dbSNP
rs1183417445 346 dbSNP
rs71783469 347 dbSNP
rs1197807145 356 dbSNP
rs1238214279 359 dbSNP
rs868018554 362 dbSNP
rs898748076 367 dbSNP
rs1355484934 371 dbSNP
rs1002570918 391 dbSNP
rs1219766799 395 dbSNP
rs1317903438 398 dbSNP
rs1276676981 400 dbSNP
rs1035431513 402 dbSNP
rs1380388981 408 dbSNP
rs1301832082 414 dbSNP
rs373798355 415 dbSNP
rs1025805207 420 dbSNP
rs1170856480 424 dbSNP
rs991632596 426 dbSNP
rs1465011958 427 dbSNP
rs1421447538 429 dbSNP
rs920097018 430 dbSNP
rs1166855105 434 dbSNP
rs1412806888 436 dbSNP
rs951502481 442 dbSNP
rs952969857 443 dbSNP
rs1008825156 455 dbSNP
rs1019660821 456 dbSNP
rs982976365 458 dbSNP
rs12303975 459 dbSNP
rs1476762425 476 dbSNP
rs111605968 479 dbSNP
rs944032130 480 dbSNP
rs1247633247 484 dbSNP
rs1477671798 488 dbSNP
rs1322640969 493 dbSNP
rs1041062550 509 dbSNP
rs921317012 522 dbSNP
rs1226257320 527 dbSNP
rs1393512014 557 dbSNP
rs979339085 558 dbSNP
rs1331407630 559 dbSNP
rs1445336207 560 dbSNP
rs1323496776 565 dbSNP
rs181907162 572 dbSNP
rs1433022143 574 dbSNP
rs935152318 585 dbSNP
rs992410458 586 dbSNP
rs1367663305 587 dbSNP
rs1162507492 593 dbSNP
rs187377937 595 dbSNP
rs754643283 596 dbSNP
rs376972753 598 dbSNP
rs947266090 607 dbSNP
rs879191570 608 dbSNP
rs1041645326 618 dbSNP
rs1265196847 626 dbSNP
rs1220786927 630 dbSNP
rs1356317609 631 dbSNP
rs903136611 636 dbSNP
rs1002538344 637 dbSNP
rs1228755515 638 dbSNP
rs1373934597 646 dbSNP
rs1047316736 647 dbSNP
rs779598147 652 dbSNP
rs1389974064 655 dbSNP
rs1291739690 657 dbSNP
rs7977239 658 dbSNP
rs894191346 660 dbSNP
rs1013098615 665 dbSNP
rs1026757857 667 dbSNP
rs1419394412 681 dbSNP
rs1487796498 684 dbSNP
rs1191941111 688 dbSNP
rs1370506708 692 dbSNP
rs768585183 695 dbSNP
rs1267211511 696 dbSNP
rs756008922 704 dbSNP
rs1163142384 705 dbSNP
rs1287202699 707 dbSNP
rs1215425447 709 dbSNP
rs1020239842 710 dbSNP
rs1412287286 713 dbSNP
rs952977526 719 dbSNP
rs1330035938 725 dbSNP
rs1281230163 726 dbSNP
rs1401781292 727 dbSNP
rs746944670 730 dbSNP
rs761559167 735 dbSNP
rs1297428749 736 dbSNP
rs899904811 738 dbSNP
rs1298929059 740 dbSNP
rs1174561640 742 dbSNP
rs1264342158 742 dbSNP
rs1377142191 742 dbSNP
rs398018300 742 dbSNP
rs55888711 742 dbSNP
rs71745789 742 dbSNP
rs760634374 742 dbSNP
rs767285713 742 dbSNP
rs1193444121 744 dbSNP
rs1444900582 748 dbSNP
rs1257785826 750 dbSNP
rs997366119 755 dbSNP
rs1360131277 759 dbSNP
rs1398451067 761 dbSNP
rs1343601324 765 dbSNP
rs779930796 768 dbSNP
rs1260771482 771 dbSNP
rs1220390804 772 dbSNP
rs1318573502 779 dbSNP
rs1277313796 781 dbSNP
rs1315027808 786 dbSNP
rs1428330908 786 dbSNP
rs1341975738 787 dbSNP
rs1336323260 792 dbSNP
rs531674948 793 dbSNP
rs1283477541 797 dbSNP
rs925087551 799 dbSNP
rs1241677196 800 dbSNP
rs1474593618 802 dbSNP
rs1286180435 803 dbSNP
rs1352350036 804 dbSNP
rs1213917302 806 dbSNP
rs760874328 807 dbSNP
rs968668795 808 dbSNP
rs1187339988 809 dbSNP
rs1236195274 811 dbSNP
rs1442163216 815 dbSNP
rs1257306680 825 dbSNP
rs1457844130 825 dbSNP
rs1801869 832 dbSNP
rs1030843338 841 dbSNP
rs956838487 842 dbSNP
rs992004042 845 dbSNP
rs1417946035 846 dbSNP
rs1174496036 849 dbSNP
rs1403210178 850 dbSNP
rs1396370902 851 dbSNP
rs1273361961 852 dbSNP
rs1408777410 852 dbSNP
rs1472249601 852 dbSNP
rs753888833 860 dbSNP
rs558432390 861 dbSNP
rs79921532 864 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084079. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_014718 | 3UTR | GGGGCCCCGGGUGUACAUAUAUAAUGUAUAUUUUUUCAAUGUUGUCGUGAGUGCAGCCCAUGUUCCUGCGUGCAGCUCACGGCCUUGUGUGUAUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_014718 | 3UTR | UAUAUUUUUUCAAUGUUGUCGUGAGUGCAGCCCAUGUUCCUGCGUGCAGCUCACGGCCUUGUGUGUAUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_014718 | 3UTR | AUAUAUAAUGUAUAUUUUUUCAAUGUUGUCGUGAGUGCAGCCCAUGUUCCUGCGUGCAGCUCACGGCCUUGUGUGUAUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_014718 | 3UTR | UAAUGUAUAUUUUUUCAAUGUUGUCGUGAGUGCAGCCCAUGUUCCUGCGUGCAGCUCACGGCCUUGUGUGUAUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_014718 | 3UTR | AGCCCAUGUUCCUGCGUGCAGCUCACGGCCUUGUGUGUAUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_014718 | 3UTR | ACAUAUAUAAUGUAUAUUUUUUCAAUGUUGUCGUGAGUGCAGCCCAUGUUCCUGCGUGCAGCUCACGGCCUUGUGUGUAUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM1084079
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_AbnovaAb
Location of target site ENST00000266546.6 | 3UTR | CACGGCCUUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
Click to see details
118 hsa-miR-3160-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT066658 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT075318 SF3B3 splicing factor 3b subunit 3 2 4
MIRT077083 EIF1 eukaryotic translation initiation factor 1 2 2
MIRT100381 HSPA1B heat shock protein family A (Hsp70) member 1B 2 6
MIRT135259 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 4
MIRT184913 ZNF268 zinc finger protein 268 2 2
MIRT218862 CDKN1A cyclin dependent kinase inhibitor 1A 2 2
MIRT446580 FPR2 formyl peptide receptor 2 2 2
MIRT448834 FGD4 FYVE, RhoGEF and PH domain containing 4 2 2
MIRT449455 RNF13 ring finger protein 13 2 2
MIRT452284 CARD8 caspase recruitment domain family member 8 2 2
MIRT452628 FAM162A family with sequence similarity 162 member A 2 2
MIRT453454 GLG1 golgi glycoprotein 1 2 2
MIRT454188 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 6
MIRT454434 GTF2F1 general transcription factor IIF subunit 1 2 2
MIRT454575 NT5DC3 5'-nucleotidase domain containing 3 2 2
MIRT455555 TRAF1 TNF receptor associated factor 1 2 6
MIRT455841 MPL MPL proto-oncogene, thrombopoietin receptor 2 6
MIRT455969 BCAS4 breast carcinoma amplified sequence 4 2 4
MIRT456805 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT457320 DUSP19 dual specificity phosphatase 19 2 2
MIRT457366 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT457684 ZNF587 zinc finger protein 587 2 2
MIRT458158 LYRM4 LYR motif containing 4 2 6
MIRT458641 SGPP2 sphingosine-1-phosphate phosphatase 2 2 2
MIRT459134 FADS6 fatty acid desaturase 6 2 2
MIRT459153 NARF nuclear prelamin A recognition factor 2 4
MIRT460460 NOM1 nucleolar protein with MIF4G domain 1 2 4
MIRT460974 STK17B serine/threonine kinase 17b 2 2
MIRT461439 ACSBG1 acyl-CoA synthetase bubblegum family member 1 2 2
MIRT461507 NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 2 2
MIRT462490 GSR glutathione-disulfide reductase 2 2
MIRT462638 PHF5A PHD finger protein 5A 2 2
MIRT463279 ZFX zinc finger protein, X-linked 2 2
MIRT463360 ZFAND4 zinc finger AN1-type containing 4 2 2
MIRT465777 TMOD3 tropomodulin 3 2 2
MIRT466143 TMEM120B transmembrane protein 120B 2 2
MIRT468401 SETD3 SET domain containing 3 2 2
MIRT468998 RNPS1 RNA binding protein with serine rich domain 1 2 2
MIRT471574 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT472108 NME2 NME/NM23 nucleoside diphosphate kinase 2 2 2
MIRT472125 NME1-NME2 NME1-NME2 readthrough 2 2
MIRT473020 MRPS14 mitochondrial ribosomal protein S14 2 2
MIRT473083 MORN4 MORN repeat containing 4 2 2
MIRT475598 HMGB2 high mobility group box 2 2 4
MIRT475937 GXYLT2 glucoside xylosyltransferase 2 2 8
MIRT476117 GPR157 G protein-coupled receptor 157 2 2
MIRT476406 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT478003 DNAL1 dynein axonemal light chain 1 2 2
MIRT487969 IQSEC2 IQ motif and Sec7 domain 2 2 2
MIRT489418 TUBB2A tubulin beta 2A class IIa 2 2
MIRT491522 IL10RA interleukin 10 receptor subunit alpha 2 2
MIRT492673 PLEC plectin 2 2
MIRT493545 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT513085 USP9X ubiquitin specific peptidase 9, X-linked 2 2
MIRT514009 CECR2 CECR2, histone acetyl-lysine reader 2 4
MIRT516683 ZNF860 zinc finger protein 860 2 2
MIRT518392 ZNF250 zinc finger protein 250 2 2
MIRT522683 LUZP1 leucine zipper protein 1 2 6
MIRT524488 CEP97 centrosomal protein 97 2 2
MIRT527457 CLEC12B C-type lectin domain family 12 member B 2 2
MIRT527705 IL17REL interleukin 17 receptor E like 2 2
MIRT531647 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT532381 UMPS uridine monophosphate synthetase 2 2
MIRT532588 MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 2 2
MIRT533555 TPM4 tropomyosin 4 2 2
MIRT548371 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 4
MIRT550250 PVR poliovirus receptor 2 2
MIRT552555 ZFP36L2 ZFP36 ring finger protein like 2 2 4
MIRT554113 SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 2 2
MIRT554131 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT561344 ZBTB18 zinc finger and BTB domain containing 18 2 2
MIRT561638 RUNX3 runt related transcription factor 3 2 2
MIRT566497 PBX2P1 PBX homeobox 2 pseudogene 1 2 2
MIRT570583 OTUD7B OTU deubiquitinase 7B 2 2
MIRT572731 MCTS1 MCTS1, re-initiation and release factor 2 2
MIRT574041 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT575231 Fut1 fucosyltransferase 1 2 2
MIRT606811 BICD2 BICD cargo adaptor 2 2 2
MIRT621016 CLSTN3 calsyntenin 3 2 2
MIRT637852 PDCL3 phosducin like 3 2 2
MIRT640477 ZNF557 zinc finger protein 557 2 2
MIRT642827 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT643887 IMP4 IMP4, U3 small nucleolar ribonucleoprotein 2 2
MIRT664874 PCNXL2 pecanex homolog 2 2 2
MIRT680528 PRIM2 DNA primase subunit 2 2 2
MIRT680648 KIAA1456 KIAA1456 2 2
MIRT680807 ZNF578 zinc finger protein 578 2 2
MIRT680921 STX2 syntaxin 2 2 2
MIRT681112 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT681147 INTS7 integrator complex subunit 7 2 2
MIRT681966 TFCP2 transcription factor CP2 2 2
MIRT684316 GTF3C4 general transcription factor IIIC subunit 4 2 2
MIRT684906 GSG2 histone H3 associated protein kinase 2 2
MIRT685499 MED16 mediator complex subunit 16 2 2
MIRT685929 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT686875 SLC25A32 solute carrier family 25 member 32 2 2
MIRT688204 FNIP1 folliculin interacting protein 1 2 2
MIRT688791 CCNB1 cyclin B1 2 2
MIRT689227 RPS19 ribosomal protein S19 2 2
MIRT690470 ZNF33A zinc finger protein 33A 2 2
MIRT691982 PLCXD1 phosphatidylinositol specific phospholipase C X domain containing 1 2 2
MIRT694006 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694529 TRIM72 tripartite motif containing 72 2 2
MIRT695420 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT695784 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT697799 UBXN2A UBX domain protein 2A 2 2
MIRT698275 TMEM2 transmembrane protein 2 2 2
MIRT698317 TMEM136 transmembrane protein 136 2 2
MIRT699971 RREB1 ras responsive element binding protein 1 2 2
MIRT700717 PNO1 partner of NOB1 homolog 2 2
MIRT701721 MTMR12 myotubularin related protein 12 2 2
MIRT701879 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT702959 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT706178 ZNF716 zinc finger protein 716 2 2
MIRT706463 SPRED1 sprouty related EVH1 domain containing 1 2 2
MIRT718154 TTC33 tetratricopeptide repeat domain 33 2 2
MIRT718711 ANKRD18A ankyrin repeat domain 18A 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3160-3p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-3160-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-3160-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-3160-3p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-3160-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3160-3p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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